2023-11-25T01:56:21,015 Created temporary directory: /tmp/pip-build-tracker-_h84ny4t 2023-11-25T01:56:21,017 Initialized build tracking at /tmp/pip-build-tracker-_h84ny4t 2023-11-25T01:56:21,017 Created build tracker: /tmp/pip-build-tracker-_h84ny4t 2023-11-25T01:56:21,018 Entered build tracker: /tmp/pip-build-tracker-_h84ny4t 2023-11-25T01:56:21,018 Created temporary directory: /tmp/pip-wheel-th8k0lzn 2023-11-25T01:56:21,022 Created temporary directory: /tmp/pip-ephem-wheel-cache-08yfidgb 2023-11-25T01:56:21,044 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T01:56:21,048 2 location(s) to search for versions of kage-genotyper: 2023-11-25T01:56:21,048 * https://pypi.org/simple/kage-genotyper/ 2023-11-25T01:56:21,048 * https://www.piwheels.org/simple/kage-genotyper/ 2023-11-25T01:56:21,049 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/ 2023-11-25T01:56:21,049 Getting page https://pypi.org/simple/kage-genotyper/ 2023-11-25T01:56:21,051 Found index url https://pypi.org/simple/ 2023-11-25T01:56:21,196 Fetched page https://pypi.org/simple/kage-genotyper/ as application/vnd.pypi.simple.v1+json 2023-11-25T01:56:21,204 Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2 2023-11-25T01:56:21,205 Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3 2023-11-25T01:56:21,206 Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4 2023-11-25T01:56:21,206 Found link https://files.pythonhosted.org/packages/9d/e0/92cb3c9de8704e94d12b1d13eee089389ba0b8cdeb5f7606e82357615039/kage-genotyper-0.0.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.5 2023-11-25T01:56:21,207 Found link https://files.pythonhosted.org/packages/98/56/5a01b760b477d84f2e0d4284563b1a49d4c7af720ce16d8fe35273e43659/kage-genotyper-0.0.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.6 2023-11-25T01:56:21,208 Found link https://files.pythonhosted.org/packages/62/2f/3fff47b02ebb52b577de8ff09e20d158d6796d577ab450cdee96f698915c/kage-genotyper-0.0.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.7 2023-11-25T01:56:21,208 Found link https://files.pythonhosted.org/packages/52/b9/4e0cdf90c6fdee475a81d9eb47e8313937d68047a26314a6f4106b1f2f1d/kage-genotyper-0.0.8.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.8 2023-11-25T01:56:21,209 Found link https://files.pythonhosted.org/packages/37/a0/b87d59cc79cc5ecdd5517141b7c9e29953bfea3e9272b99840e1cd9b3d97/kage-genotyper-0.0.9.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.9 2023-11-25T01:56:21,210 Found link https://files.pythonhosted.org/packages/a3/cc/ba453ad8b8cb30ad50f71f35eb171b5fd2419999465ec9ae2572fc1816bb/kage-genotyper-0.0.10.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.10 2023-11-25T01:56:21,211 Found link https://files.pythonhosted.org/packages/6a/54/8aba286e135663aade36ea3d9a597062aee31798db5622527b438994c2c2/kage-genotyper-0.0.12.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.12 2023-11-25T01:56:21,211 Found link https://files.pythonhosted.org/packages/17/30/f3311d5d12dd04c079c18f0003d3d2d71b5948ee3cd18a74c29890b64a1a/kage-genotyper-0.0.13.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.13 2023-11-25T01:56:21,212 Found link https://files.pythonhosted.org/packages/96/34/4fcd7e0720c9c302ff886c6a92fed693424313842c59864d7c85316dd688/kage-genotyper-0.0.14.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.14 2023-11-25T01:56:21,213 Found link https://files.pythonhosted.org/packages/f3/8b/e0cc70a7601f4c4104eed8edcfba5801143448954baa7aa5e8fdd052eee6/kage-genotyper-0.0.15.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.15 2023-11-25T01:56:21,214 Found link https://files.pythonhosted.org/packages/e6/d1/5686f2e34b84a0800c2f8ad566d16ae77ce5d0f42348ffbf48e62c360fe2/kage-genotyper-0.0.16.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.16 2023-11-25T01:56:21,215 Found link https://files.pythonhosted.org/packages/38/fb/7fc95292837f188450095b39cba3774e469cd086c1fbc646a67168fff033/kage-genotyper-0.0.17.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.17 2023-11-25T01:56:21,215 Found link https://files.pythonhosted.org/packages/11/d9/ac03f00ab30367578bb4b736502f5fe689b0eaa939bcf94d918c265bc66e/kage-genotyper-0.0.18.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.18 2023-11-25T01:56:21,216 Found link https://files.pythonhosted.org/packages/0f/78/d9e9825f272271a0710a2b61012c0d4408db5330306fbe7f9e44655f35c1/kage-genotyper-0.0.19.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.19 2023-11-25T01:56:21,216 Found link https://files.pythonhosted.org/packages/27/1c/1c7840b44249035052e4755c560195f8fc3e3bb9eb0c5c7ef948cfdd7b81/kage-genotyper-0.0.20.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.20 2023-11-25T01:56:21,217 Found link https://files.pythonhosted.org/packages/a0/22/7a0ee3155f5dcb657d1bb2b45d005a5b809ca34b5efae40e2e8fd8a5be4e/kage-genotyper-0.0.21.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.21 2023-11-25T01:56:21,217 Found link https://files.pythonhosted.org/packages/e5/85/7107f0bddffb62199b75a0d83b1f2f147738b6288f9bcae648f682530538/kage-genotyper-0.0.22.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.22 2023-11-25T01:56:21,218 Found link https://files.pythonhosted.org/packages/4c/e6/e5bde91b67bc9c0e2214f2c7d5553a607fa9ab1f3cb7fcae077f7b66806c/kage-genotyper-0.0.23.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.23 2023-11-25T01:56:21,219 Found link https://files.pythonhosted.org/packages/2c/8b/dc4fdf2d083fb0c65d6cc2da49f912cbb7d84511c989a57e53d84396ab96/kage-genotyper-0.0.24.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.24 2023-11-25T01:56:21,220 Found link https://files.pythonhosted.org/packages/bd/82/1a0c533aaef379daaac2135e30b3d88828af5edbe197e92898853b2a4685/kage-genotyper-0.0.25.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.25 2023-11-25T01:56:21,220 Found link https://files.pythonhosted.org/packages/7e/bb/8b366a0178c24ad815438653c9e01602e62052069868f8c49f1c4ad6d8a3/kage-genotyper-0.0.26.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.26 2023-11-25T01:56:21,221 Found link https://files.pythonhosted.org/packages/ef/63/244a1b6a43e4e32b6a570481f97d5d6d609c53eee340d8748d081269355d/kage-genotyper-0.0.27.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.27 2023-11-25T01:56:21,222 Found link https://files.pythonhosted.org/packages/06/fd/b5325cd9790510b27b2ada67c89671cf629d00761ee7bcd2c54c0e7aa3ca/kage-genotyper-0.0.28.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.28 2023-11-25T01:56:21,222 Found link https://files.pythonhosted.org/packages/c4/13/28d486029d280fe02c2f7b2c40376ec7fc481ef1df68745df2948f602616/kage-genotyper-0.0.29.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.29 2023-11-25T01:56:21,223 Found link https://files.pythonhosted.org/packages/34/29/5624612fbd8ecc4fa9fa120a2c98a6b03990db6d0bd8b949450c31a0607a/kage-genotyper-0.0.30.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.30 2023-11-25T01:56:21,224 Found link https://files.pythonhosted.org/packages/e2/20/58431b71a41936744a457814111b46939b67bc9f5a8c5aa3286e97eeb370/kage-genotyper-0.1.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.0 2023-11-25T01:56:21,224 Found link https://files.pythonhosted.org/packages/60/02/88cd3521d06f167af9773608ac2db840bb7f90943fb8d9463436a2406baa/kage-genotyper-0.1.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.1 2023-11-25T01:56:21,225 Found link https://files.pythonhosted.org/packages/9d/11/2de2b62db1ed40a897bf2c8b31399ca3b3c774d5ad8732f69a08a3702261/kage-genotyper-0.1.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.2 2023-11-25T01:56:21,226 Found link https://files.pythonhosted.org/packages/a0/05/f5534cac773ba893d3c93012a0150dbf9f8cb535a3b33f1f03957d3dbd69/kage-genotyper-0.1.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.3 2023-11-25T01:56:21,227 Found link https://files.pythonhosted.org/packages/82/aa/9aced1ac4cc86f4bee19188f607e13563fb10b00353cf2dd43468ecf53b8/kage-genotyper-0.1.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.4 2023-11-25T01:56:21,227 Found link https://files.pythonhosted.org/packages/c7/e3/b7c4d3b74ba8925070ce4a3bf43649f3c2307e16f410784948827d60121a/kage-genotyper-0.1.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.5 2023-11-25T01:56:21,228 Found link https://files.pythonhosted.org/packages/03/2a/60bf909f494aa560ab360d944e5a8d50fb3c49e0b8234c66a8707450c700/kage-genotyper-0.1.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.6 2023-11-25T01:56:21,228 Found link https://files.pythonhosted.org/packages/92/a7/16ea375bfd0cedabe9ff3e3de05dac0200e29b8e10da32ca14fa2a08618a/kage-genotyper-0.1.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.7 2023-11-25T01:56:21,229 Found link https://files.pythonhosted.org/packages/38/17/f0baef7183ba4438de06bc31f1b8f2c0ff2d74d4c4722c3eb03b6775a1db/kage-genotyper-0.1.9.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.9 2023-11-25T01:56:21,229 Found link https://files.pythonhosted.org/packages/ea/65/6603d0188274d337bf016d69e92d70c0346b18cf82aee13e9636fb8a98ea/kage-genotyper-0.1.11.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.11 2023-11-25T01:56:21,230 Found link https://files.pythonhosted.org/packages/83/51/4614c411c210988f58596f9dd2074d917ba9e5434f0da4887dd7c1df7737/kage-genotyper-0.1.12.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.12 2023-11-25T01:56:21,231 Found link https://files.pythonhosted.org/packages/39/09/58efe36d13073b7e4e1d0a34ac7d4e5a30c05c6fb99a2e0723b4c7882285/kage-genotyper-0.1.13.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.13 2023-11-25T01:56:21,231 Found link https://files.pythonhosted.org/packages/77/c4/2bc34acb31ab5175cdb7a195a9fe1f59c7795cc859f869c5d5efd5dad759/kage-genotyper-0.1.14.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.14 2023-11-25T01:56:21,232 Found link https://files.pythonhosted.org/packages/77/e5/892007364823bbc1ff487614d77afcd1b738dadf40009ee9a7c4baf3dc41/kage-genotyper-0.2.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.0 2023-11-25T01:56:21,233 Found link https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.1 2023-11-25T01:56:21,234 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/ 2023-11-25T01:56:21,234 Getting page https://www.piwheels.org/simple/kage-genotyper/ 2023-11-25T01:56:21,236 Found index url https://www.piwheels.org/simple/ 2023-11-25T01:56:21,412 Fetched page https://www.piwheels.org/simple/kage-genotyper/ as text/html 2023-11-25T01:56:21,422 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.0-py3-none-any.whl#sha256=c6f295d7ee07f206eb458327d59668b39e20994daa63a92c41f5eea2b751c768 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,423 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.14-py3-none-any.whl#sha256=89aa46552e9ebf050aee9b3e46e89416d8f1aea98bd1b612338c3fda037644ac (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,424 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.13-py3-none-any.whl#sha256=9bab52d5e6efcb201a0c5e79e1e7137c1edb5fbe54012b27da2e1ecec3430b40 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,425 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.12-py3-none-any.whl#sha256=cd646570f0e14c8ab99fcc6d060f5fd865d19cf26c182b9496dbd5036ef8474f (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,425 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.11-py3-none-any.whl#sha256=712cbb5cdf0871b3e86a1bfe294160b9dd2f5e975cbeb0b069608b05e61c2e63 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,425 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.9-py3-none-any.whl#sha256=abd4c09ec1c0e4e768343edc00f128ef5051e536f64ea1cf8574bc4189560df4 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,426 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.7-py3-none-any.whl#sha256=8f43fee2c6e410f98da126e538c321be6635f13c4117ae655b5903f85ba61a37 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,426 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.6-py3-none-any.whl#sha256=9a7614ebd0f8fbe1f2ffd60e6026cca8df99304e7df1a63f9a12e083dd8783c9 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,427 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.5-py3-none-any.whl#sha256=863ff32767fc3a5a4edf2d12a875bdb5282e1d7585f5cccadd07e34291bace14 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,427 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.4-py3-none-any.whl#sha256=1e408f1ed6d4777d59ddd7a160fb14c4c1f41d5c812a10b71d15c6691a376ba9 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,428 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.3-py3-none-any.whl#sha256=019dc5797ec7e2f674c903aec8ffec4e6144d072983bc357b84210d089c2aa00 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,428 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.2-py3-none-any.whl#sha256=7b7e6244fdda2b946ac39cc1f3f5ec058a048b088badccf4a7b51d8558a836c0 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,429 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.1-py3-none-any.whl#sha256=38c35463a41fb2abfeb920906eeeff7c05abd5b24007b70ab960699884a57030 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,430 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.1.0-py3-none-any.whl#sha256=6982f507c36702a89842b3b169e08b64968e0a45d8cc1f240e9bab2d00fa6e30 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,430 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.30-py3-none-any.whl#sha256=925040198aeaf8ee50b389c1f5b53028e48e9864866f33f19b3c5683d09b88c0 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,431 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.29-py3-none-any.whl#sha256=a3d4f0096efe9011cee430d801727472fc57ae199b0a9c2505c7c1dced2a1f42 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,431 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.28-py3-none-any.whl#sha256=300dac9a2f965c3a5db0db983ff25a0f3f87d77fdf2e4337a39b9d32960ebf35 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,432 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.27-py3-none-any.whl#sha256=158cb4cc23fc99e88fffd12cc33f45706f00ffd4bf61f8e154c6784da6ad3dab (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,433 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.26-py3-none-any.whl#sha256=47ba5f3687b9a97062b67420b47afffa3db43ab055ab75214953f259bf27097a (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,433 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.25-py3-none-any.whl#sha256=2d96189cd413c6434b7493e54e3c958233b879124d1196fd2af50d8b3bb3f801 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,433 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.24-py3-none-any.whl#sha256=b71fc42047e6354a93f096624bba70c64d698923d0c463291ba16a9330719df3 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,434 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.23-py3-none-any.whl#sha256=c18fe0b577c6929804d2c27354474dff0c3ee75b07aa56352a7a58cad13e6faa (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,434 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.22-py3-none-any.whl#sha256=d69afe43c7ad35a7f1a56f2bd46a364119ecc57afc5f66db5cb9441de6bde4be (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,435 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.21-py3-none-any.whl#sha256=986ef6dc08553b37b5f45a3f5d4fab3fe7b7533b66c46d61d0ccd7e1805808e9 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,435 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.20-py3-none-any.whl#sha256=52ce4e67bf082e0c52c1e017279afb7f816d91a56ba7b84f05da7b2f90c5f773 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,436 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.19-py3-none-any.whl#sha256=1e722fb7bd2ba87c1876b357e13c266b42cac5fe7a90181bdf470c0adf294a8b (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,437 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.18-py3-none-any.whl#sha256=e86a7b9cffd0dbcc1521c3de19e5df55b99115a71bb548f2987aca3e271eb3c4 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,437 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.17-py3-none-any.whl#sha256=028c50f35435ecf5cc9340632b04277e33156d88e7b5a7845902e025f88bd9d3 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,438 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.16-py3-none-any.whl#sha256=dab976f34303030cadeacc00def520c328db9330fcd801e2bcbd553b867566c4 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,438 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.15-py3-none-any.whl#sha256=81609a0f4e374c51e06eeb78fe684d382f3004234eba4b9bb5f10677f62f185c (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,439 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.14-py3-none-any.whl#sha256=a08f7b62017bb01e15c21b4752a1c020e022b2d1c97e4f473c1b4e1486c786a1 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,440 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.13-py3-none-any.whl#sha256=a256a7d8c6fbb49d6029a56d01e7608d04434d6016d8851d750b3c0a946fe0d4 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,440 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.12-py3-none-any.whl#sha256=7d3956620409c7b4f5acbfb7ba2f2c5b1ac4fa3761bc803d9500f4e627943de5 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,441 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.10-py3-none-any.whl#sha256=f0de4fec6f21e6c0e0fe926b55af6a9032fb8af3ff0ac0a4e462c49fa9fefaf5 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,441 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.9-py3-none-any.whl#sha256=6728e2c34e7473f450ba0dc3b680189ec324937e583ce456df04d4352047531b (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,442 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.8-py3-none-any.whl#sha256=17c38eb9469806ae1d16028b61450a754b7a2e9607b63cf4cb2c1bc4cd19f562 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,442 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.7-py3-none-any.whl#sha256=6c45550e73562e3543e4dedf63f5e42897169f62a701603f2c4a460ac1e0b5fa (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,442 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.6-py3-none-any.whl#sha256=7f26289022b49cd9611615aa9f542bea798b0827f5df45e23c5d65148fb2f169 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,443 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.5-py3-none-any.whl#sha256=dbca21ae8964d1bf38306442e517c6b17b688a29519f7675082be82135c4c98f (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,444 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.4-py3-none-any.whl#sha256=a279c71d67ea133f1cf0818eb5c559c97e5f2460cc45aba044dd17abf30d6446 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,444 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.0.3-py3-none-any.whl#sha256=7d52b7bdc251d8fa41b2627126137f9c9d6b34e76dcc9d8c85de8d0d42f6bf33 (from https://www.piwheels.org/simple/kage-genotyper/) 2023-11-25T01:56:21,445 Skipping link: not a file: https://www.piwheels.org/simple/kage-genotyper/ 2023-11-25T01:56:21,446 Skipping link: not a file: https://pypi.org/simple/kage-genotyper/ 2023-11-25T01:56:21,470 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates 2023-11-25T01:56:21,490 Collecting kage-genotyper==0.2.1 2023-11-25T01:56:21,493 Created temporary directory: /tmp/pip-unpack-g7uaxc1x 2023-11-25T01:56:21,976 Downloading kage-genotyper-0.2.1.tar.gz (12.8 MB) 2023-11-25T01:56:24,750 Added kage-genotyper==0.2.1 from https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-_h84ny4t' 2023-11-25T01:56:24,753 Running setup.py (path:/tmp/pip-wheel-th8k0lzn/kage-genotyper_39cf0b6f3d7b4f9cb3cd916aef5b3793/setup.py) egg_info for package kage-genotyper 2023-11-25T01:56:24,754 Created temporary directory: /tmp/pip-pip-egg-info-6q7l14z3 2023-11-25T01:56:24,754 Preparing metadata (setup.py): started 2023-11-25T01:56:24,756 Running command python setup.py egg_info 2023-11-25T01:56:25,886 running egg_info 2023-11-25T01:56:25,887 creating /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info 2023-11-25T01:56:25,913 writing /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/PKG-INFO 2023-11-25T01:56:25,916 writing dependency_links to /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/dependency_links.txt 2023-11-25T01:56:25,918 writing entry points to /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/entry_points.txt 2023-11-25T01:56:25,919 writing requirements to /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/requires.txt 2023-11-25T01:56:25,920 writing top-level names to /tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/top_level.txt 2023-11-25T01:56:25,922 writing manifest file '/tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/SOURCES.txt' 2023-11-25T01:56:26,008 reading manifest file '/tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/SOURCES.txt' 2023-11-25T01:56:26,009 adding license file 'LICENSE' 2023-11-25T01:56:26,013 writing manifest file '/tmp/pip-pip-egg-info-6q7l14z3/kage_genotyper.egg-info/SOURCES.txt' 2023-11-25T01:56:26,124 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T01:56:26,128 Source in /tmp/pip-wheel-th8k0lzn/kage-genotyper_39cf0b6f3d7b4f9cb3cd916aef5b3793 has version 0.2.1, which satisfies requirement kage-genotyper==0.2.1 from https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz 2023-11-25T01:56:26,129 Removed kage-genotyper==0.2.1 from https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-_h84ny4t' 2023-11-25T01:56:26,134 Created temporary directory: /tmp/pip-unpack-1zm7e6fn 2023-11-25T01:56:26,135 Created temporary directory: /tmp/pip-unpack-tv9lf1px 2023-11-25T01:56:26,155 Building wheels for collected packages: kage-genotyper 2023-11-25T01:56:26,159 Created temporary directory: /tmp/pip-wheel-b0n4zjos 2023-11-25T01:56:26,160 Building wheel for kage-genotyper (setup.py): started 2023-11-25T01:56:26,161 Destination directory: /tmp/pip-wheel-b0n4zjos 2023-11-25T01:56:26,162 Running command python setup.py bdist_wheel 2023-11-25T01:56:27,487 running bdist_wheel 2023-11-25T01:56:27,618 running build 2023-11-25T01:56:27,619 running build_py 2023-11-25T01:56:27,648 creating build 2023-11-25T01:56:27,648 creating build/lib 2023-11-25T01:56:27,649 creating build/lib/kage 2023-11-25T01:56:27,650 copying kage/variant_filtering.py -> build/lib/kage 2023-11-25T01:56:27,652 copying kage/command_line_interface.py -> build/lib/kage 2023-11-25T01:56:27,655 copying kage/configuration.py -> build/lib/kage 2023-11-25T01:56:27,657 copying kage/node_counts.py -> build/lib/kage 2023-11-25T01:56:27,658 copying kage/__init__.py -> build/lib/kage 2023-11-25T01:56:27,660 copying kage/io.py -> build/lib/kage 2023-11-25T01:56:27,663 copying kage/util.py -> build/lib/kage 2023-11-25T01:56:27,665 creating build/lib/kage/indexing 2023-11-25T01:56:27,666 copying kage/indexing/path_variant_indexing.py -> build/lib/kage/indexing 2023-11-25T01:56:27,669 copying kage/indexing/paths.py -> build/lib/kage/indexing 2023-11-25T01:56:27,671 copying kage/indexing/graph.py -> build/lib/kage/indexing 2023-11-25T01:56:27,674 copying kage/indexing/tricky_variants.py -> build/lib/kage/indexing 2023-11-25T01:56:27,676 copying kage/indexing/main.py -> build/lib/kage/indexing 2023-11-25T01:56:27,678 copying kage/indexing/div.py -> build/lib/kage/indexing 2023-11-25T01:56:27,680 copying kage/indexing/__init__.py -> build/lib/kage/indexing 2023-11-25T01:56:27,682 copying kage/indexing/index_bundle.py -> build/lib/kage/indexing 2023-11-25T01:56:27,683 copying kage/indexing/path_based_count_model.py -> build/lib/kage/indexing 2023-11-25T01:56:27,686 copying kage/indexing/modulo_filter.py -> build/lib/kage/indexing 2023-11-25T01:56:27,687 copying kage/indexing/kmer_scoring.py -> build/lib/kage/indexing 2023-11-25T01:56:27,689 copying kage/indexing/sparse_haplotype_matrix.py -> build/lib/kage/indexing 2023-11-25T01:56:27,692 copying kage/indexing/signatures.py -> build/lib/kage/indexing 2023-11-25T01:56:27,696 creating build/lib/kage/analysis 2023-11-25T01:56:27,697 copying kage/analysis/analysis.py -> build/lib/kage/analysis 2023-11-25T01:56:27,700 copying kage/analysis/debugging.py -> build/lib/kage/analysis 2023-11-25T01:56:27,702 copying kage/analysis/variant_kmer_analyser.py -> build/lib/kage/analysis 2023-11-25T01:56:27,704 copying kage/analysis/genotype_accuracy.py -> build/lib/kage/analysis 2023-11-25T01:56:27,706 copying kage/analysis/__init__.py -> build/lib/kage/analysis 2023-11-25T01:56:27,708 creating build/lib/kage/genotyping 2023-11-25T01:56:27,709 copying kage/genotyping/combination_model_genotyper.py -> build/lib/kage/genotyping 2023-11-25T01:56:27,711 copying kage/genotyping/multiallelic.py -> build/lib/kage/genotyping 2023-11-25T01:56:27,713 copying kage/genotyping/__init__.py -> build/lib/kage/genotyping 2023-11-25T01:56:27,715 creating build/lib/kage/simulation 2023-11-25T01:56:27,716 copying kage/simulation/simulation.py -> build/lib/kage/simulation 2023-11-25T01:56:27,718 copying kage/simulation/read_simulation.py -> build/lib/kage/simulation 2023-11-25T01:56:27,720 copying kage/simulation/__init__.py -> build/lib/kage/simulation 2023-11-25T01:56:27,722 creating build/lib/kage/benchmarking 2023-11-25T01:56:27,723 copying kage/benchmarking/vcf_preprocessing.py -> build/lib/kage/benchmarking 2023-11-25T01:56:27,726 copying kage/benchmarking/__init__.py -> build/lib/kage/benchmarking 2023-11-25T01:56:27,728 creating build/lib/kage/preprocessing 2023-11-25T01:56:27,729 copying kage/preprocessing/variants.py -> build/lib/kage/preprocessing 2023-11-25T01:56:27,732 copying kage/preprocessing/__init__.py -> build/lib/kage/preprocessing 2023-11-25T01:56:27,734 creating build/lib/kage/models 2023-11-25T01:56:27,735 copying kage/models/models.py -> build/lib/kage/models 2023-11-25T01:56:27,737 copying kage/models/helper_index_using_duplicate_counts.py -> build/lib/kage/models 2023-11-25T01:56:27,739 copying kage/models/mapping_model.py -> build/lib/kage/models 2023-11-25T01:56:27,741 copying kage/models/helper_model.py -> build/lib/kage/models 2023-11-25T01:56:27,744 copying kage/models/joint_distribution.py -> build/lib/kage/models 2023-11-25T01:56:27,745 copying kage/models/__init__.py -> build/lib/kage/models 2023-11-25T01:56:27,747 copying kage/models/sampling_combo_model.py -> build/lib/kage/models 2023-11-25T01:56:27,750 copying kage/models/helper_index.py -> build/lib/kage/models 2023-11-25T01:56:27,753 creating build/lib/kage/modles 2023-11-25T01:56:27,754 copying kage/modles/__init__.py -> build/lib/kage/modles 2023-11-25T01:56:27,795 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T01:56:27,795 !! 2023-11-25T01:56:27,796 ******************************************************************************** 2023-11-25T01:56:27,797 Please avoid running ``setup.py`` directly. 2023-11-25T01:56:27,797 Instead, use pypa/build, pypa/installer or other 2023-11-25T01:56:27,798 standards-based tools. 2023-11-25T01:56:27,799 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T01:56:27,800 ******************************************************************************** 2023-11-25T01:56:27,801 !! 2023-11-25T01:56:27,802 self.initialize_options() 2023-11-25T01:56:27,823 installing to build/bdist.linux-armv7l/wheel 2023-11-25T01:56:27,823 running install 2023-11-25T01:56:27,847 running install_lib 2023-11-25T01:56:27,873 creating build/bdist.linux-armv7l 2023-11-25T01:56:27,873 creating build/bdist.linux-armv7l/wheel 2023-11-25T01:56:27,875 creating build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,876 copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,879 creating build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,880 copying build/lib/kage/indexing/path_variant_indexing.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,882 copying build/lib/kage/indexing/paths.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,885 copying build/lib/kage/indexing/graph.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,888 copying build/lib/kage/indexing/tricky_variants.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,890 copying build/lib/kage/indexing/main.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,893 copying build/lib/kage/indexing/div.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,894 copying build/lib/kage/indexing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,896 copying build/lib/kage/indexing/index_bundle.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,898 copying build/lib/kage/indexing/path_based_count_model.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,900 copying build/lib/kage/indexing/modulo_filter.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,902 copying build/lib/kage/indexing/kmer_scoring.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,904 copying build/lib/kage/indexing/sparse_haplotype_matrix.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,907 copying build/lib/kage/indexing/signatures.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2023-11-25T01:56:27,911 creating build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,912 copying build/lib/kage/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,915 copying build/lib/kage/analysis/debugging.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,918 copying build/lib/kage/analysis/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,920 copying build/lib/kage/analysis/genotype_accuracy.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,923 copying build/lib/kage/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2023-11-25T01:56:27,925 copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,929 copying build/lib/kage/configuration.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,931 creating build/bdist.linux-armv7l/wheel/kage/genotyping 2023-11-25T01:56:27,932 copying build/lib/kage/genotyping/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2023-11-25T01:56:27,935 copying build/lib/kage/genotyping/multiallelic.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2023-11-25T01:56:27,937 copying build/lib/kage/genotyping/__init__.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2023-11-25T01:56:27,938 copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,941 creating build/bdist.linux-armv7l/wheel/kage/simulation 2023-11-25T01:56:27,942 copying build/lib/kage/simulation/simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2023-11-25T01:56:27,944 copying build/lib/kage/simulation/read_simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2023-11-25T01:56:27,946 copying build/lib/kage/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2023-11-25T01:56:27,949 creating build/bdist.linux-armv7l/wheel/kage/benchmarking 2023-11-25T01:56:27,950 copying build/lib/kage/benchmarking/vcf_preprocessing.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking 2023-11-25T01:56:27,952 copying build/lib/kage/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking 2023-11-25T01:56:27,954 creating build/bdist.linux-armv7l/wheel/kage/preprocessing 2023-11-25T01:56:27,955 copying build/lib/kage/preprocessing/variants.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing 2023-11-25T01:56:27,958 copying build/lib/kage/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing 2023-11-25T01:56:27,959 copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,961 creating build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,962 copying build/lib/kage/models/models.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,964 copying build/lib/kage/models/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,966 copying build/lib/kage/models/mapping_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,968 copying build/lib/kage/models/helper_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,971 copying build/lib/kage/models/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,972 copying build/lib/kage/models/__init__.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,974 copying build/lib/kage/models/sampling_combo_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,976 copying build/lib/kage/models/helper_index.py -> build/bdist.linux-armv7l/wheel/kage/models 2023-11-25T01:56:27,978 copying build/lib/kage/io.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,981 copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage 2023-11-25T01:56:27,983 creating build/bdist.linux-armv7l/wheel/kage/modles 2023-11-25T01:56:27,984 copying build/lib/kage/modles/__init__.py -> build/bdist.linux-armv7l/wheel/kage/modles 2023-11-25T01:56:27,985 running install_egg_info 2023-11-25T01:56:28,016 running egg_info 2023-11-25T01:56:28,041 writing kage_genotyper.egg-info/PKG-INFO 2023-11-25T01:56:28,044 writing dependency_links to kage_genotyper.egg-info/dependency_links.txt 2023-11-25T01:56:28,045 writing entry points to kage_genotyper.egg-info/entry_points.txt 2023-11-25T01:56:28,046 writing requirements to kage_genotyper.egg-info/requires.txt 2023-11-25T01:56:28,048 writing top-level names to kage_genotyper.egg-info/top_level.txt 2023-11-25T01:56:28,081 reading manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2023-11-25T01:56:28,086 adding license file 'LICENSE' 2023-11-25T01:56:28,092 writing manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2023-11-25T01:56:28,093 Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-0.2.1-py3.11.egg-info 2023-11-25T01:56:28,107 running install_scripts 2023-11-25T01:56:28,125 creating build/bdist.linux-armv7l/wheel/kage_genotyper-0.2.1.dist-info/WHEEL 2023-11-25T01:56:28,127 creating '/tmp/pip-wheel-b0n4zjos/kage_genotyper-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T01:56:28,129 adding 'kage/__init__.py' 2023-11-25T01:56:28,132 adding 'kage/command_line_interface.py' 2023-11-25T01:56:28,134 adding 'kage/configuration.py' 2023-11-25T01:56:28,135 adding 'kage/io.py' 2023-11-25T01:56:28,137 adding 'kage/node_counts.py' 2023-11-25T01:56:28,138 adding 'kage/util.py' 2023-11-25T01:56:28,140 adding 'kage/variant_filtering.py' 2023-11-25T01:56:28,142 adding 'kage/analysis/__init__.py' 2023-11-25T01:56:28,144 adding 'kage/analysis/analysis.py' 2023-11-25T01:56:28,146 adding 'kage/analysis/debugging.py' 2023-11-25T01:56:28,149 adding 'kage/analysis/genotype_accuracy.py' 2023-11-25T01:56:28,151 adding 'kage/analysis/variant_kmer_analyser.py' 2023-11-25T01:56:28,152 adding 'kage/benchmarking/__init__.py' 2023-11-25T01:56:28,154 adding 'kage/benchmarking/vcf_preprocessing.py' 2023-11-25T01:56:28,156 adding 'kage/genotyping/__init__.py' 2023-11-25T01:56:28,157 adding 'kage/genotyping/combination_model_genotyper.py' 2023-11-25T01:56:28,159 adding 'kage/genotyping/multiallelic.py' 2023-11-25T01:56:28,160 adding 'kage/indexing/__init__.py' 2023-11-25T01:56:28,161 adding 'kage/indexing/div.py' 2023-11-25T01:56:28,163 adding 'kage/indexing/graph.py' 2023-11-25T01:56:28,165 adding 'kage/indexing/index_bundle.py' 2023-11-25T01:56:28,166 adding 'kage/indexing/kmer_scoring.py' 2023-11-25T01:56:28,168 adding 'kage/indexing/main.py' 2023-11-25T01:56:28,170 adding 'kage/indexing/modulo_filter.py' 2023-11-25T01:56:28,172 adding 'kage/indexing/path_based_count_model.py' 2023-11-25T01:56:28,174 adding 'kage/indexing/path_variant_indexing.py' 2023-11-25T01:56:28,177 adding 'kage/indexing/paths.py' 2023-11-25T01:56:28,184 adding 'kage/indexing/signatures.py' 2023-11-25T01:56:28,186 adding 'kage/indexing/sparse_haplotype_matrix.py' 2023-11-25T01:56:28,188 adding 'kage/indexing/tricky_variants.py' 2023-11-25T01:56:28,190 adding 'kage/models/__init__.py' 2023-11-25T01:56:28,191 adding 'kage/models/helper_index.py' 2023-11-25T01:56:28,192 adding 'kage/models/helper_index_using_duplicate_counts.py' 2023-11-25T01:56:28,194 adding 'kage/models/helper_model.py' 2023-11-25T01:56:28,195 adding 'kage/models/joint_distribution.py' 2023-11-25T01:56:28,197 adding 'kage/models/mapping_model.py' 2023-11-25T01:56:28,199 adding 'kage/models/models.py' 2023-11-25T01:56:28,202 adding 'kage/models/sampling_combo_model.py' 2023-11-25T01:56:28,204 adding 'kage/modles/__init__.py' 2023-11-25T01:56:28,205 adding 'kage/preprocessing/__init__.py' 2023-11-25T01:56:28,209 adding 'kage/preprocessing/variants.py' 2023-11-25T01:56:28,211 adding 'kage/simulation/__init__.py' 2023-11-25T01:56:28,213 adding 'kage/simulation/read_simulation.py' 2023-11-25T01:56:28,215 adding 'kage/simulation/simulation.py' 2023-11-25T01:56:28,222 adding 'kage_genotyper-0.2.1.dist-info/LICENSE' 2023-11-25T01:56:28,223 adding 'kage_genotyper-0.2.1.dist-info/METADATA' 2023-11-25T01:56:28,224 adding 'kage_genotyper-0.2.1.dist-info/WHEEL' 2023-11-25T01:56:28,225 adding 'kage_genotyper-0.2.1.dist-info/entry_points.txt' 2023-11-25T01:56:28,226 adding 'kage_genotyper-0.2.1.dist-info/top_level.txt' 2023-11-25T01:56:28,227 adding 'kage_genotyper-0.2.1.dist-info/RECORD' 2023-11-25T01:56:28,230 removing build/bdist.linux-armv7l/wheel 2023-11-25T01:56:28,358 Building wheel for kage-genotyper (setup.py): finished with status 'done' 2023-11-25T01:56:28,361 Created wheel for kage-genotyper: filename=kage_genotyper-0.2.1-py3-none-any.whl size=115606 sha256=787bcfd15fdadab85ee28dd29967a3f92c4302cb16549911d93f7b95ac14c50d 2023-11-25T01:56:28,363 Stored in directory: /tmp/pip-ephem-wheel-cache-08yfidgb/wheels/bc/94/75/6e8343d802a9a87489846b6c04d9cafb3a7ae0d167a2e1fb72 2023-11-25T01:56:28,376 Successfully built kage-genotyper 2023-11-25T01:56:28,382 Removed build tracker: '/tmp/pip-build-tracker-_h84ny4t'