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2023-11-25T02:15:23,438 Added vsc-install==0.19.6 from https://files.pythonhosted.org/packages/b2/48/15d307c5e5f6ac27d8c3733e1633110f97c2cbdf9e910225d0c55abc8bdd/vsc-install-0.19.6.tar.gz to build tracker '/tmp/pip-build-tracker-9t3ztbhg' 2023-11-25T02:15:23,439 Running setup.py (path:/tmp/pip-wheel-2o0e6i0c/vsc-install_6e07eb65bd0347a8a63e027d115db44d/setup.py) egg_info for package vsc-install 2023-11-25T02:15:23,440 Created temporary directory: /tmp/pip-pip-egg-info-va95xslk 2023-11-25T02:15:23,441 Preparing metadata (setup.py): started 2023-11-25T02:15:23,442 Running command python setup.py egg_info 2023-11-25T02:15:24,144 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:46: UserWarning: Logging class to prefix the message with a human readable log level 2023-11-25T02:15:24,144 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-11-25T02:15:24,152 WARN: cleanup lib/vsc_install.egg-info 2023-11-25T02:15:24,207 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-stripped-env', 'bin/python-noenv.sh'], 'namespace_packages': ['vsc'], 'version': '0.19.6', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'}/usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-25T02:15:24,208 !! 2023-11-25T02:15:24,209 ******************************************************************************** 2023-11-25T02:15:24,210 Usage of dash-separated 'description-file' will not be supported in future 2023-11-25T02:15:24,210 versions. Please use the underscore name 'description_file' instead. 2023-11-25T02:15:24,212 By 2024-Sep-26, you need to update your project and remove deprecated calls 2023-11-25T02:15:24,212 or your builds will no longer be supported. 2023-11-25T02:15:24,213 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-25T02:15:24,214 ******************************************************************************** 2023-11-25T02:15:24,215 !! 2023-11-25T02:15:24,215 opt = self.warn_dash_deprecation(opt, section) 2023-11-25T02:15:24,223 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T02:15:24,223 !! 2023-11-25T02:15:24,225 ******************************************************************************** 2023-11-25T02:15:24,225 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T02:15:24,225 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T02:15:24,226 ******************************************************************************** 2023-11-25T02:15:24,226 !! 2023-11-25T02:15:24,227 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T02:15:24,538 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:674: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2023-11-25T02:15:24,539 !! 2023-11-25T02:15:24,540 ******************************************************************************** 2023-11-25T02:15:24,540 Please replace its usage with implicit namespaces (PEP 420). 2023-11-25T02:15:24,541 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2023-11-25T02:15:24,542 ******************************************************************************** 2023-11-25T02:15:24,543 !! 2023-11-25T02:15:24,544 ep.load()(self, ep.name, value) 2023-11-25T02:15:24,552 running egg_info 2023-11-25T02:15:24,555 creating /tmp/pip-pip-egg-info-va95xslk/vsc_install.egg-info 2023-11-25T02:15:24,586 writing manifest file '/tmp/pip-pip-egg-info-va95xslk/vsc_install.egg-info/SOURCES.txt' 2023-11-25T02:15:24,689 writing manifest file '/tmp/pip-pip-egg-info-va95xslk/vsc_install.egg-info/SOURCES.txt' 2023-11-25T02:15:24,804 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T02:15:24,809 Source in /tmp/pip-wheel-2o0e6i0c/vsc-install_6e07eb65bd0347a8a63e027d115db44d has version 0.19.6, which satisfies requirement vsc-install==0.19.6 from https://files.pythonhosted.org/packages/b2/48/15d307c5e5f6ac27d8c3733e1633110f97c2cbdf9e910225d0c55abc8bdd/vsc-install-0.19.6.tar.gz 2023-11-25T02:15:24,810 Removed vsc-install==0.19.6 from https://files.pythonhosted.org/packages/b2/48/15d307c5e5f6ac27d8c3733e1633110f97c2cbdf9e910225d0c55abc8bdd/vsc-install-0.19.6.tar.gz from build tracker '/tmp/pip-build-tracker-9t3ztbhg' 2023-11-25T02:15:24,816 Created temporary directory: /tmp/pip-unpack-w9rnjx_s 2023-11-25T02:15:24,817 Created temporary directory: /tmp/pip-unpack-q7fyny4g 2023-11-25T02:15:24,824 Building wheels for collected packages: vsc-install 2023-11-25T02:15:24,828 Created temporary directory: /tmp/pip-wheel-8hs0zetm 2023-11-25T02:15:24,829 Building wheel for vsc-install (setup.py): started 2023-11-25T02:15:24,830 Destination directory: /tmp/pip-wheel-8hs0zetm 2023-11-25T02:15:24,831 Running command python setup.py bdist_wheel 2023-11-25T02:15:25,524 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/log.py:46: UserWarning: Logging class to prefix the message with a human readable log level 2023-11-25T02:15:25,524 warnings.warn(Log.__doc__) # avoid DeprecationWarning to ensure warn is shown 2023-11-25T02:15:25,543 new target {'cmdclass': {'bdist_rpm': , 'egg_info': , 'install_scripts': , 'sdist': , 'test': , 'vsc_release': }, 'command_packages': ['vsc.install.shared_setup', 'shared_setup_dist_only', 'setuptools.command', 'distutils.command'], 'download_url': 'Author: Stijn De Weirdt;Andy Georges;Jens Timmerman', 'package_dir': {'': 'lib'}, 'setup_requires': ['setuptools'], 'test_suite': 'test', 'url': 'https://github.com/hpcugent/vsc-install', 'dependency_links': [], 'install_requires': ['setuptools < 42.0', 'mock'], 'tests_require': ['mock', 'pylint < 3', 'prospector < 1.10.4', 'pylint-plugin-utils < 0.8', 'pylint-django < 2.5.4', 'astroid <= 2.17.0-dev0', 'pycodestyle < 2.10'], 'packages': dict_keys(['vsc', 'vsc.install']), 'classifiers': ['License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)'], 'license': 'LGPLv2+', 'description': "vsc-install provides shared setuptools functions and classes for python libraries developed by UGent's HPC group", 'long_description': 'Description\n===========\nvsc-install provides shared setuptools functions and classes for python libraries developed by UGent\'s HPC group\n\nCommon pitfalls\n=========\nbdist_rpm will fail if your install_requires = \'setuptools\' because it will fail to find a setuptools rpm.\n```\nexport VSC_RPM_PYTHON=1\n```\nwill make sure the `python-` prefix is added to the packages in install_requires for building RPM\'s so python-setuptools will be used.\n\nAdd tests\n=========\n\nTest are python modules in the `test` directory which have subclass of `TestCase`\nand at least one method that has a name starting with `test_`\n\nYou are advised to use\n```python\nfrom vsc.install.testing import TestCase\n```\n(instead of basic `TestCase` from `unittest`).\n\nAnd any `__main__` or `suite()` is not needed (anymore).\n\nInitialise the test directory with\n\n```bash\nmkdir -p test\necho \'\' > test/__init__.py\necho \'from vsc.install.commontest import CommonTest\' > test/00-import.py\n```\n\nWhen the tests are run, `test`, `lib` and `bin` (if relevant) are added to `sys.path`,\nso no need to do so in the tets modules.\n\nRun tests\n=========\n\n```bash\npython setup.py test\n```\n\nFilter tests with `-F` (test module names) and `-f` (test method names)\n\nSee also\n\n```bash\npython setup.py test --help\n```\n\nThe dependencies are installed automatically in the `.eggs` directory. It will first try\n`github.ugent.be` and then `github.com` to install them. The same method is used as through\nwhich the original repository was cloned (http, ssh, ...). In case you need private\ndependencies, always clone with ssh.\n\nIn case following error occurs, it means there is a test module `XYZ` that cannot be imported.\n\n```txt\nFile "setup.py", line 499, in loadTestsFromModule\n testsuites = ScanningLoader.loadTestsFromModule(self, module)\nFile "build/bdist.linux-x86_64/egg/setuptools/command/test.py", line 37, in loadTestsFromModule\nFile "/usr/lib64/python2.7/unittest/loader.py", line 100, in loadTestsFromName\n parent, obj = obj, getattr(obj, part)\nAttributeError: \'module\' object has no attribute \'XYZ\'\n```\n\nYou can try get the actual import error for fixing the issue with\n```bash\npython -c \'import sys;sys.path.insert(0, "test");import XYZ;\'\n```\n\nFix failing tests\n=================\n\n* Missing / incorrect `LICENSE`\n\n * Copy the appropirate license file under `known_licenses` in the project directory and name the file `LICENSE`\n\n* Missing `README.md`\n\n * Create a `README.md` file with at least a `Description` section\n\n* Fix license headers as described in https://github.com/hpcugent/vsc-install/blob/master/lib/vsc/install/headers.py\n\n ```\n cd \n REPO_BASE_DIR=$PWD python -m vsc.install.headers path/to/file script_or_not\n ```\n\n Fix them all at once using find\n\n ```\n find ./{lib,test} -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\'\n find ./bin -type f -name \'*.py\' | REPO_BASE_DIR=$PWD xargs -I \'{}\' python -m vsc.install.headers \'{}\' 1\n ```\n\n Do not forget to check the diff.\n Modules/scripts without docstring (or magic comment \'### END OF HEADER\') (incl. test modules)\n will get correct header appended to existing one. Add a docstring (or magic comment) to resolve this.\n* Python scripts (i.e. with a python shebang and installed as scripts in setup) have to use `#!/usr/bin/env python` as shebang\n* Remove any `build_rpms_settings.sh` leftovers\n* The `TARGET` dict in `setup.py` should be minimal unless you really know what you are doing (i.e. if it is truly different from defaults)\n\n * Remove `name`, `scripts`, ...\n\n* `Exception: vsc namespace packages do not allow non-shared namespace`\n\n * Add to the `__init__.py`\n\n ```python\n """\n Allow other packages to extend this namespace, zip safe setuptools style\n """\n import pkg_resources\n pkg_resources.declare_namespace(__name__)\n ```\n\n\nbare-except\n-----------\n```python\ntry:\n # something\nexcept:\n```\nThis is bad, because this except will also catch sys.exit() or Keyboardinterupts, something you\ntypically do not want, if you catch these the program will be in a weird state and then continue on,\nwhilst the person who just pressed ctrl+c is wondering what is going on and why it is not stopping.\n\nso at the very least make this\nexcept Exception (which doesn\'t catch sys.exit and KeyboardInterupt)\nand it would be appreciated if you could actually figure out what exceptions to expect and only catch those\nand let your program crash if something you did not intend happens\nbecause it helps developers catch weird errors on their side better.\n\nif you do something like\n```python\ntry:\n Path(int(somestring)).write_text(\'important data\')\nexcept Exception:\n pass # if somestring is not an integer, we didn\'t need to write anyway, but otherwise we do\n```\nbecause you know sometimes this string does not contain an integer, so the int() call can fail\nyou should really only catch ValueError, because this will also fail when your disk is full, or you don\'t have permissions\nor xxx other reasons, and the important data will not be written out and nobody will notice anything!\n\n\n\nif not \'a\' in somelist -> if \'a\' not in somelist\n-------------------------------------------------\n\nthis isn\'t that big of a deal, but if everyone is consistent it\'s less likely to introduce bugs when a not is added or removed where it didn\'t need to.\nAlso helps code review, not in reads better, like english.\n\n\narguments-differ\n-----------------\n\nthis will give you errors if you override a function of a superclass but don\'t use the same amount of arguments,\nusing less will surely give you errors, so the linter catches this for you now\n\nunused-argument\n-----------------\nif you have a function definition witch accepts an argument that is never used in the function body this will now give an error.\nclean up your function definition, or fix the error where you actually do need to take this argument into account\n\nunused-variable\n----------------\ndefining a variable and then not using it anymore smells bad, why did you do that?\nsometimes you do things like\n```python\nout, exit_code = run_command(something)\n```\nbut you are not interested in the out, only in the exit code,\nin this case, write\n```python\n_, exit_code = run_command(something)\n```\n\nusing _ as a variable name lets pylint and other readers know you do not intend to use that output in the first place.\n\n\nreimported\n-------------\nwhen you re import a name somewhere else,\nusually this is just an import to much, or 2 imports with the same name, pay attention.\n```python\nimport six\nfrom django import six\n```\n=>\n```python\nimport six\nfrom django import six as django_six\n```\n\nredefinition of unused name\n----------------------------\nthis usually also points to something you did not expect\n```python\nfrom vsc.accountpageclient import VscGroup\n\n\nclass VscGroup(object):\n pass\n```\n\n=> do you need the import? use import as\ndid you mean to use the same name? ...\n\nRedefined builtin\n-----------------\nuse different name, for example change\n\n```python\ndef filter(b_b):\n """Function filter"""\n return b_b\n```\n=>\n```python\ndef new_filter(b_b):\n """Function filter"""\n return b_b\n```\n\nlogging-not-lazy\n----------------\n\nDon\'t use string interpolation when logging if not needed:\n\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\' % (name, program))\n```\n=>\n```python\nimport logging\nname = \'world\'\nprogram =\'python\'\nlogging.info(\'Hello %s! This is %s.\', name, program)\n```\n\n\nFix Python 3 failing tests\n==========================\n\n* We try to follow https://docs.python.org/3/howto/pyporting.html\n* some useful info can be found here as well https://portingguide.readthedocs.io/en/latest/index.html\n\nunpacking-in-except / redefine-in-handler\n-----------------------------------------\n\nMultiple exception have to be grouped in a tuple like\n\n```python\n ...\nexcept (ExceptionOne, ExceptionTwo) ...\n ...\n```\n\n(espcially when used like `except A, B:` which should be `except (A, B):`.\n\nOld raise syntax\n----------------\nPython 2’s **raise** statement was designed at a time when exceptions weren’t classes, and an exception’s _type_, _value_, and _traceback_ components were three separate objects. In Python 3, one single object includes all information about an exception.\n\n```python\nraise NameError, "Error"\n```\n=>\n```python\nraise NameError("Error")\n```\n\nor change\n```python\nraise NameError, "Error", some_traceback\n```\n=>\n```python\nraise NameError("Error")\n\ne = NameError("Error")\ne.__traceback__ = some_traceback\n```\n\nbacktick\n--------\n\n```python\nA = 2\nB = `A`\n```\n=>\n```python\nA = 2\nB = str(A)\n```\n\nOld ne operator\n---------------\n\n```python\nif 2 <> 3:\n```\n=>\n```python\nif 2 != 3:\n```\n\nOctal literal\n-------------\n\n```python\nos.chmod(foo, 0700)\n```\n=>\n```python\nos.chmod(foo, 0o700)\n```\n\nImport star module level\n------------------------\nDo not import \\*, be more specific. If it is impossible, import it in the top level (and suppress the pyflakes error F403.)\n```python\ndef coords(angle, distance):\n """Function coords"""\n from math import *\n return distance * cos(angle), distance * sin(angle)\n```\n=>\n```python\nfrom math import * # noqa: F403\ndef coords(angle, distance):\n """Function coords"""\n return distance * cos(angle), distance * sin(angle)\n```\n\nRaising string\n--------------\n```python\nraise ValueError, \'message\'\n```\n=>\n```python\nraise ValueError(\'message\')\n```\n\nIndexing exception\n------------------\n```python\nexcept IndexError as err:\n err[0]\n```\n=>\n```python\nexcept IndexError as err:\n IndexError.args[0]\n```\n\nturning off these errors\n-------------------------\n\nIf in any of these cases you think: yes, I really needed to do this,\nI\'m monkeypatching things, I\'m adding extra functionality that does indeed have an extra(default) paramenter, etc, etc\nyou can let pylint know to ignore this error in this one specific block of code\nby adding e.g. the comment `# pylint: disable=`\n\n```python\nclass Something(object):\n def dosomething(self, some, thing):\n # do something\n\nclass MyFancyThing(SomeThing):\n # pylint: disable=arguments-differ\n def dosomething(self, some, thing, fancy=None):\n # do something fancy\n```\n\nFull list with all codes is available at http://pylint-messages.wikidot.com/all-codes\n\nAuto-generated `Jenkinsfile` / `tox.ini`\n========================================\n\n`vsc-install` has support for auto-generating the `Jenkinsfile` (and accompanying `tox.ini`), via:\n\n python -m vsc.install.ci\n\nFailing check on (contents of) `Jenkinsfile` or `tox.ini`\n---------------------------------------------------------\n\nThere are dedicated tests that check whether the `Jenkinsfile` and `tox.ini` files were auto-generated\nby `vsc-install`.\n\nTo fix the tests, simply run `python -m vsc.install.ci` using the latest version of `vsc-install`\nto re-generate `Jenkinsfile` and `tox.ini`, and then commit & push the changes.\n\nIf the contents of the file that is auto-generated by the latest version of `vsc-install` is incorrect\nfor whatever reason, you can temporarily bypass the failing test by adding an a file named `Jenkinsfile.NOT_AUTOGENERATED_YET` or `tox.ini.NOT_AUTOGENERATED_YET`.\n\nThe file **must** contain the URL of a vsc-install issue, created via via https://github.com/hpcugent/vsc-install/issues/new, where the incorrectly generated file is reported.\n\nExample:\n\n echo "see https://github.com/hpcugent/vsc-install/issues/1234 for more info" > Jenkinsfile.NOT_AUTOGENERATED_YET\n\n\nRequiring JIRA issue ref in PR title\n------------------------------------\n\nTo also include a check in the `Jenkinsfile` for having a JIRA issue ref (like `[HPC-1234]`) in the pull request title,\nadd a configuration file for `python -m vsc.install.ci` named `vsc-ci.ini` like this into the repository:\n\n```ini\n[vsc-ci]\njira_issue_id_in_pr_title=1\n```\n\nRunning shellcheck\n------------------\n\nTo also run `shellcheck` in the generated `Jenkinsfile`, specify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\nrun_shellcheck=1\n```\n\nAdding additional test commands to Jenkinsfile\n----------------------------------------------\n\nIf additional custom test commands (other than `shellcheck`) need to be run by the `Jenkinsfile`,\nyou can speicfy this in `vsc-ci.ini` via `additional_test_commands`.\n\nTo add a single custom test command:\n\n```ini\n[vsc-ci]\nadditional_test_commands=./more_test.sh\n```\n\nTo add multiple test commands:\n\n```ini\n[vsc-ci]\nadditional_test_commands=\n first-test-cmd\n second-test-cmd\n third-test-cmd\n```\n\nOverriding install location of scripts\n--------------------------------------\n\nIn some repositories we specify a system-wide install location for scripts via `setup.cfg`\n(see for example the `icinga-checks` repository), which causes problems when installing `vsc-install` in the tox\nenvironment.\n\nTo override the installation prefix for scripts (only in the tox environment where the tests are run),\nspecify this via a `vsc-ci.ini` configuration file:\n\n```ini\n[vsc-ci]\ninstall_scripts_prefix_override=1\n```\n\nUse \'easy_install\' to install tox\n---------------------------------\n\nFor legacy reasons easy_install is still supported. If you still need it you can enable it (not recommended):\n\n```ini\n[vsc-ci]\neasy_install_tox=1\n```\n\nAvoid running ``pip install`` in repo checkout\n----------------------------------------------\n\nFor some repositories, running ``pip install`` to install ``tox`` from the checked out repository is problematic,\nbecause of the ``setup.cfg`` containing things that should not be picked up by ``pip``.\n\nFor those repositories, you can specify that the installation commands in the ``Jenkinsfile`` should be\nrun from ``$HOME``, via:\n\n```ini\n[vsc-ci]\nhome_install=1\n```\n\nLeveraging system (Python) packages\n-----------------------------------\n\nIf a repository requires Python packages as dependencies that are installed as OS packages (for example, ``pyslurm``),\ntox must be configured to inherit these packages in the test environment. This can be enabled via:\n\n```ini\n[vsc-ci]\ninherit_site_packages=1\n```\n\nPre-installing dependencies before running tests\n------------------------------------------------\n\nAlthough ``vsc-install`` will automatically install all dependencies listed in ``setup.py`` prior to running the\ntests, there are cases where this doesn\'t work out as expected.\nSome Python packages only support being installed with ``pip install`` (for example because they use a namespace\nthat is spread across multiple different Python packages, like ``fs`` and ``fs.sshfs``).\n\nYou can specify Python packages that should be installed (with ``pip install``) before running the tests via\n``pip_install_test_deps`` in ``vsc-ci.ini``:\n\n```ini\n[vsc-ci]\npip_install_test_deps=\n foo\n bar<1.0\n```\n\nThis results in corresponding ``pip install`` commands being added to the ``commands_pre`` section in ``tox.ini``:\n\n```ini\n[testenv]\ncommands_pre =\n pip install \'foo\'\n pip install \'bar<1.0\'\n pip install \'setuptools<42.0\'\n python -m easy_install -U vsc-install\n```\n', 'long_description_content_type': 'text/markdown', 'scripts': ['bin/python-stripped-env', 'bin/python-noenv.sh'], 'namespace_packages': ['vsc'], 'version': '0.19.6', 'author': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'author_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'maintainer': 'Stijn De Weirdt;Andy Georges;Jens Timmerman', 'maintainer_email': 'stijn.deweirdt@ugent.be, andy.georges@ugent.be, jens.timmerman@ugent.be', 'name': 'vsc-install'} 2023-11-25T02:15:25,582 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options 2023-11-25T02:15:25,584 !! 2023-11-25T02:15:25,585 ******************************************************************************** 2023-11-25T02:15:25,585 Usage of dash-separated 'description-file' will not be supported in future 2023-11-25T02:15:25,586 versions. Please use the underscore name 'description_file' instead. 2023-11-25T02:15:25,586 By 2024-Sep-26, you need to update your project and remove deprecated calls 2023-11-25T02:15:25,587 or your builds will no longer be supported. 2023-11-25T02:15:25,588 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2023-11-25T02:15:25,588 ******************************************************************************** 2023-11-25T02:15:25,589 !! 2023-11-25T02:15:25,590 opt = self.warn_dash_deprecation(opt, section) 2023-11-25T02:15:25,594 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T02:15:25,595 !! 2023-11-25T02:15:25,596 ******************************************************************************** 2023-11-25T02:15:25,596 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T02:15:25,597 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T02:15:25,597 ******************************************************************************** 2023-11-25T02:15:25,599 !! 2023-11-25T02:15:25,599 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T02:15:25,900 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:674: SetuptoolsDeprecationWarning: The namespace_packages parameter is deprecated. 2023-11-25T02:15:25,901 !! 2023-11-25T02:15:25,902 ******************************************************************************** 2023-11-25T02:15:25,902 Please replace its usage with implicit namespaces (PEP 420). 2023-11-25T02:15:25,904 See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages for details. 2023-11-25T02:15:25,904 ******************************************************************************** 2023-11-25T02:15:25,905 !! 2023-11-25T02:15:25,906 ep.load()(self, ep.name, value) 2023-11-25T02:15:25,936 running bdist_wheel 2023-11-25T02:15:26,028 running build 2023-11-25T02:15:26,028 running build_py 2023-11-25T02:15:26,052 creating build 2023-11-25T02:15:26,053 creating build/lib 2023-11-25T02:15:26,053 creating build/lib/vsc 2023-11-25T02:15:26,055 copying lib/vsc/__init__.py -> build/lib/vsc 2023-11-25T02:15:26,057 creating build/lib/vsc/install 2023-11-25T02:15:26,058 copying lib/vsc/install/headers.py -> build/lib/vsc/install 2023-11-25T02:15:26,060 copying lib/vsc/install/commontest.py -> build/lib/vsc/install 2023-11-25T02:15:26,062 copying lib/vsc/install/methodinspector.py -> build/lib/vsc/install 2023-11-25T02:15:26,064 copying lib/vsc/install/__init__.py -> build/lib/vsc/install 2023-11-25T02:15:26,066 copying lib/vsc/install/ci.py -> build/lib/vsc/install 2023-11-25T02:15:26,068 copying lib/vsc/install/shared_setup.py -> build/lib/vsc/install 2023-11-25T02:15:26,071 copying lib/vsc/install/testing.py -> build/lib/vsc/install 2023-11-25T02:15:26,075 running build_scripts 2023-11-25T02:15:26,076 creating build/scripts-3.11 2023-11-25T02:15:26,077 copying bin/python-stripped-env -> build/scripts-3.11 2023-11-25T02:15:26,080 copying bin/python-noenv.sh -> build/scripts-3.11 2023-11-25T02:15:26,081 changing mode of build/scripts-3.11/python-noenv.sh from 644 to 755 2023-11-25T02:15:26,105 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T02:15:26,105 !! 2023-11-25T02:15:26,106 ******************************************************************************** 2023-11-25T02:15:26,107 Please avoid running ``setup.py`` directly. 2023-11-25T02:15:26,107 Instead, use pypa/build, pypa/installer or other 2023-11-25T02:15:26,108 standards-based tools. 2023-11-25T02:15:26,108 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T02:15:26,109 ******************************************************************************** 2023-11-25T02:15:26,110 !! 2023-11-25T02:15:26,110 self.initialize_options() 2023-11-25T02:15:26,111 installing to build/bdist.linux-armv7l/wheel 2023-11-25T02:15:26,111 running install 2023-11-25T02:15:26,131 running install_lib 2023-11-25T02:15:26,155 WARN: Skipping installation of build/bdist.linux-armv7l/wheel/vsc/__init__.py (namespace package) 2023-11-25T02:15:26,174 running install_egg_info 2023-11-25T02:15:26,201 running egg_info 2023-11-25T02:15:26,202 creating lib/vsc_install.egg-info 2023-11-25T02:15:26,232 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-11-25T02:15:26,260 writing manifest file 'lib/vsc_install.egg-info/SOURCES.txt' 2023-11-25T02:15:26,262 Copying lib/vsc_install.egg-info to build/bdist.linux-armv7l/wheel/vsc_install-0.19.6-py3.11.egg-info 2023-11-25T02:15:26,275 running install_scripts 2023-11-25T02:15:26,276 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data 2023-11-25T02:15:26,276 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data/scripts 2023-11-25T02:15:26,277 copying build/scripts-3.11/python-stripped-env -> build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data/scripts 2023-11-25T02:15:26,279 copying build/scripts-3.11/python-noenv.sh -> build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data/scripts 2023-11-25T02:15:26,281 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data/scripts/python-stripped-env to 755 2023-11-25T02:15:26,281 changing mode of build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.data/scripts/python-noenv.sh to 755 2023-11-25T02:15:26,299 creating build/bdist.linux-armv7l/wheel/vsc_install-0.19.6.dist-info/WHEEL 2023-11-25T02:15:26,301 creating '/tmp/pip-wheel-8hs0zetm/vsc_install-0.19.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T02:15:26,303 adding 'vsc_install-0.19.6-py3.11-nspkg.pth' 2023-11-25T02:15:26,305 adding 'vsc/install/__init__.py' 2023-11-25T02:15:26,307 adding 'vsc/install/ci.py' 2023-11-25T02:15:26,310 adding 'vsc/install/commontest.py' 2023-11-25T02:15:26,312 adding 'vsc/install/headers.py' 2023-11-25T02:15:26,314 adding 'vsc/install/methodinspector.py' 2023-11-25T02:15:26,323 adding 'vsc/install/shared_setup.py' 2023-11-25T02:15:26,325 adding 'vsc/install/testing.py' 2023-11-25T02:15:26,327 adding 'vsc_install-0.19.6.data/scripts/python-noenv' 2023-11-25T02:15:26,328 adding 'vsc_install-0.19.6.data/scripts/python-stripped-env' 2023-11-25T02:15:26,333 adding 'vsc_install-0.19.6.dist-info/LICENSE' 2023-11-25T02:15:26,336 adding 'vsc_install-0.19.6.dist-info/METADATA' 2023-11-25T02:15:26,337 adding 'vsc_install-0.19.6.dist-info/WHEEL' 2023-11-25T02:15:26,338 adding 'vsc_install-0.19.6.dist-info/namespace_packages.txt' 2023-11-25T02:15:26,338 adding 'vsc_install-0.19.6.dist-info/top_level.txt' 2023-11-25T02:15:26,339 adding 'vsc_install-0.19.6.dist-info/RECORD' 2023-11-25T02:15:26,341 removing build/bdist.linux-armv7l/wheel 2023-11-25T02:15:26,462 Building wheel for vsc-install (setup.py): finished with status 'done' 2023-11-25T02:15:26,465 Created wheel for vsc-install: filename=vsc_install-0.19.6-py3-none-any.whl size=60496 sha256=59687239ba13bbf1518fd56d9b55abed7050db0c03a6d4ab88bcefc78398fc86 2023-11-25T02:15:26,466 Stored in directory: /tmp/pip-ephem-wheel-cache-i_e_feja/wheels/20/c2/3d/4a1b997a8f17003c86b945e1f5f3f6eaf81e03653dd30d61dd 2023-11-25T02:15:26,481 Successfully built vsc-install 2023-11-25T02:15:26,485 Removed build tracker: '/tmp/pip-build-tracker-9t3ztbhg'