2023-11-25T05:55:19,044 Created temporary directory: /tmp/pip-build-tracker-rstwqfmg 2023-11-25T05:55:19,045 Initialized build tracking at /tmp/pip-build-tracker-rstwqfmg 2023-11-25T05:55:19,045 Created build tracker: /tmp/pip-build-tracker-rstwqfmg 2023-11-25T05:55:19,046 Entered build tracker: /tmp/pip-build-tracker-rstwqfmg 2023-11-25T05:55:19,047 Created temporary directory: /tmp/pip-wheel-_0vaxdql 2023-11-25T05:55:19,050 Created temporary directory: /tmp/pip-ephem-wheel-cache-0m077plf 2023-11-25T05:55:19,072 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T05:55:19,076 2 location(s) to search for versions of nmdc-runtime: 2023-11-25T05:55:19,076 * https://pypi.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,076 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,076 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,077 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,079 Found index url https://pypi.org/simple/ 2023-11-25T05:55:19,327 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-25T05:55:19,333 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,334 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-25T05:55:19,335 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,336 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-25T05:55:19,336 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,337 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-25T05:55:19,338 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,339 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,340 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-25T05:55:19,341 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,341 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,342 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-25T05:55:19,343 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,344 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-25T05:55:19,345 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,345 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-25T05:55:19,346 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,347 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-25T05:55:19,347 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,348 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-11-25T05:55:19,349 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,350 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-11-25T05:55:19,351 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,352 Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10 2023-11-25T05:55:19,353 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,353 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2023-11-25T05:55:19,354 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,356 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,357 Found index url https://www.piwheels.org/simple/ 2023-11-25T05:55:19,533 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-25T05:55:19,537 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,537 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,538 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,538 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,539 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,539 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-25T05:55:19,540 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,540 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,541 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,542 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-25T05:55:19,542 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,543 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-25T05:55:19,564 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-25T05:55:19,584 Collecting nmdc-runtime==1.0.10 2023-11-25T05:55:19,586 Created temporary directory: /tmp/pip-unpack-yroeeyjo 2023-11-25T05:55:20,070 Downloading nmdc_runtime-1.0.10.tar.gz (63.7 MB) 2023-11-25T05:55:45,485 Added nmdc-runtime==1.0.10 from https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz to build tracker '/tmp/pip-build-tracker-rstwqfmg' 2023-11-25T05:55:45,487 Running setup.py (path:/tmp/pip-wheel-_0vaxdql/nmdc-runtime_c5907d5090dc47139248bda8667ed12f/setup.py) egg_info for package nmdc-runtime 2023-11-25T05:55:45,488 Created temporary directory: /tmp/pip-pip-egg-info-1q_s8hna 2023-11-25T05:55:45,488 Preparing metadata (setup.py): started 2023-11-25T05:55:45,489 Running command python setup.py egg_info 2023-11-25T05:55:46,211 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T05:55:46,212 !! 2023-11-25T05:55:46,213 ******************************************************************************** 2023-11-25T05:55:46,213 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T05:55:46,214 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T05:55:46,214 ******************************************************************************** 2023-11-25T05:55:46,215 !! 2023-11-25T05:55:46,216 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T05:55:49,397 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-25T05:55:49,502 running egg_info 2023-11-25T05:55:49,504 creating /tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info 2023-11-25T05:55:49,532 writing /tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/PKG-INFO 2023-11-25T05:55:49,535 writing dependency_links to /tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/dependency_links.txt 2023-11-25T05:55:49,537 writing entry points to /tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/entry_points.txt 2023-11-25T05:55:49,539 writing top-level names to /tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/top_level.txt 2023-11-25T05:55:49,541 writing manifest file '/tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-25T05:55:49,719 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-25T05:55:49,726 reading manifest file '/tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-25T05:55:49,728 adding license file 'LICENSE' 2023-11-25T05:55:49,732 writing manifest file '/tmp/pip-pip-egg-info-1q_s8hna/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-25T05:55:49,853 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T05:55:50,340 Source in /tmp/pip-wheel-_0vaxdql/nmdc-runtime_c5907d5090dc47139248bda8667ed12f has version 1.0.10, which satisfies requirement nmdc-runtime==1.0.10 from https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz 2023-11-25T05:55:50,341 Removed nmdc-runtime==1.0.10 from https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz from build tracker '/tmp/pip-build-tracker-rstwqfmg' 2023-11-25T05:55:50,347 Created temporary directory: /tmp/pip-unpack-2nd25_c8 2023-11-25T05:55:50,349 Created temporary directory: /tmp/pip-unpack-a_puded4 2023-11-25T05:55:50,352 Building wheels for collected packages: nmdc-runtime 2023-11-25T05:55:50,356 Created temporary directory: /tmp/pip-wheel-zoiran0u 2023-11-25T05:55:50,357 Building wheel for nmdc-runtime (setup.py): started 2023-11-25T05:55:50,358 Destination directory: /tmp/pip-wheel-zoiran0u 2023-11-25T05:55:50,359 Running command python setup.py bdist_wheel 2023-11-25T05:55:51,099 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T05:55:51,099 !! 2023-11-25T05:55:51,100 ******************************************************************************** 2023-11-25T05:55:51,101 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T05:55:51,102 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T05:55:51,102 ******************************************************************************** 2023-11-25T05:55:51,103 !! 2023-11-25T05:55:51,103 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T05:55:51,675 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-25T05:55:51,778 running bdist_wheel 2023-11-25T05:55:51,922 running build 2023-11-25T05:55:51,923 running build_py 2023-11-25T05:55:51,955 creating build 2023-11-25T05:55:51,956 creating build/lib 2023-11-25T05:55:51,957 creating build/lib/nmdc_runtime 2023-11-25T05:55:51,958 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-25T05:55:51,960 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-25T05:55:51,962 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-25T05:55:51,963 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-25T05:55:51,966 creating build/lib/nmdc_runtime/infrastructure 2023-11-25T05:55:51,967 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-25T05:55:51,970 creating build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,971 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,974 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,976 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,978 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,982 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,984 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-25T05:55:51,987 creating build/lib/nmdc_runtime/domain 2023-11-25T05:55:51,988 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-25T05:55:51,990 creating build/lib/nmdc_runtime/core 2023-11-25T05:55:51,991 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-25T05:55:51,994 creating build/lib/nmdc_runtime/minter 2023-11-25T05:55:51,995 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-25T05:55:51,997 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-25T05:55:51,999 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-25T05:55:52,001 creating build/lib/nmdc_runtime/client 2023-11-25T05:55:52,002 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-25T05:55:52,005 creating build/lib/nmdc_runtime/site 2023-11-25T05:55:52,006 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,011 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,013 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,015 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,017 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,020 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-25T05:55:52,022 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,024 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,026 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,029 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,030 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,033 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,035 creating build/lib/nmdc_runtime/domain/users 2023-11-25T05:55:52,036 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-25T05:55:52,038 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-25T05:55:52,040 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-25T05:55:52,042 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-25T05:55:52,045 creating build/lib/nmdc_runtime/core/db 2023-11-25T05:55:52,045 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-25T05:55:52,048 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-25T05:55:52,050 creating build/lib/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,051 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,053 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,055 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,057 creating build/lib/nmdc_runtime/minter/domain 2023-11-25T05:55:52,058 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-25T05:55:52,061 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-25T05:55:52,063 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,064 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,067 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,069 creating build/lib/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,070 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,073 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,075 creating build/lib/nmdc_runtime/site/normalization 2023-11-25T05:55:52,076 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-25T05:55:52,078 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-25T05:55:52,081 creating build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,082 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,084 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,086 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,087 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,089 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-25T05:55:52,092 creating build/lib/nmdc_runtime/site/backup 2023-11-25T05:55:52,093 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-25T05:55:52,096 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-25T05:55:52,098 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-25T05:55:52,100 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-25T05:55:52,102 creating build/lib/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,103 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,105 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,108 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,109 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,111 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,112 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,115 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,116 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,118 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,122 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,124 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,126 creating build/lib/nmdc_runtime/site/export 2023-11-25T05:55:52,127 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-25T05:55:52,129 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-25T05:55:52,131 creating build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,132 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,134 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,136 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,139 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,141 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,142 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,146 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,147 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,150 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-25T05:55:52,196 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T05:55:52,197 !! 2023-11-25T05:55:52,198 ******************************************************************************** 2023-11-25T05:55:52,199 Please avoid running ``setup.py`` directly. 2023-11-25T05:55:52,199 Instead, use pypa/build, pypa/installer or other 2023-11-25T05:55:52,200 standards-based tools. 2023-11-25T05:55:52,201 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T05:55:52,202 ******************************************************************************** 2023-11-25T05:55:52,203 !! 2023-11-25T05:55:52,204 self.initialize_options() 2023-11-25T05:55:52,228 installing to build/bdist.linux-armv7l/wheel 2023-11-25T05:55:52,229 running install 2023-11-25T05:55:52,253 running install_lib 2023-11-25T05:55:52,281 creating build/bdist.linux-armv7l 2023-11-25T05:55:52,282 creating build/bdist.linux-armv7l/wheel 2023-11-25T05:55:52,284 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-25T05:55:52,286 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-25T05:55:52,288 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-25T05:55:52,290 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,291 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,294 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,295 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,298 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-25T05:55:52,299 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-25T05:55:52,302 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,303 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,306 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,308 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,311 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,314 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,316 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-25T05:55:52,320 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-25T05:55:52,321 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-25T05:55:52,323 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-25T05:55:52,324 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-25T05:55:52,327 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-25T05:55:52,328 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-25T05:55:52,330 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-25T05:55:52,333 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-25T05:55:52,335 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-25T05:55:52,337 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-25T05:55:52,338 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-25T05:55:52,340 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-25T05:55:52,342 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-25T05:55:52,344 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,346 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,348 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,350 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-25T05:55:52,352 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-25T05:55:52,354 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-25T05:55:52,356 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-25T05:55:52,358 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-25T05:55:52,360 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,362 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,364 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-25T05:55:52,366 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-25T05:55:52,368 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,369 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,371 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-25T05:55:52,373 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-25T05:55:52,374 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-25T05:55:52,376 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-25T05:55:52,377 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-25T05:55:52,379 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-25T05:55:52,381 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,382 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-25T05:55:52,383 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-25T05:55:52,385 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-25T05:55:52,387 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,390 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,393 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,394 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,396 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,398 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,400 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,402 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-25T05:55:52,404 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-25T05:55:52,405 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-25T05:55:52,407 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-25T05:55:52,409 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-25T05:55:52,411 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-25T05:55:52,413 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,414 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,416 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-25T05:55:52,419 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,420 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,423 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,424 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-25T05:55:52,426 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,427 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,430 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,431 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,433 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,436 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,438 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-25T05:55:52,440 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,443 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-25T05:55:52,444 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-25T05:55:52,447 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-25T05:55:52,448 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-25T05:55:52,451 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,452 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,454 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,456 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,459 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,460 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,462 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,465 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,467 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,470 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-25T05:55:52,473 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-25T05:55:52,475 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-25T05:55:52,477 running install_egg_info 2023-11-25T05:55:52,507 running egg_info 2023-11-25T05:55:52,535 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-25T05:55:52,539 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-25T05:55:52,540 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-25T05:55:53,301 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-25T05:55:53,458 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-25T05:55:53,461 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-25T05:55:53,534 adding license file 'LICENSE' 2023-11-25T05:55:53,550 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-25T05:55:53,552 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.10-py3.11.egg-info 2023-11-25T05:55:53,566 running install_scripts 2023-11-25T05:55:53,585 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.10.dist-info/WHEEL 2023-11-25T05:55:53,587 creating '/tmp/pip-wheel-zoiran0u/nmdc_runtime-1.0.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T05:55:53,590 adding 'nmdc_runtime/__init__.py' 2023-11-25T05:55:53,591 adding 'nmdc_runtime/containers.py' 2023-11-25T05:55:53,592 adding 'nmdc_runtime/main.py' 2023-11-25T05:55:53,595 adding 'nmdc_runtime/util.py' 2023-11-25T05:55:53,597 adding 'nmdc_runtime/client/__init__.py' 2023-11-25T05:55:53,599 adding 'nmdc_runtime/core/__init__.py' 2023-11-25T05:55:53,601 adding 'nmdc_runtime/core/db/Database.py' 2023-11-25T05:55:53,602 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-25T05:55:53,604 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-25T05:55:53,605 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-25T05:55:53,607 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-25T05:55:53,608 adding 'nmdc_runtime/domain/__init__.py' 2023-11-25T05:55:53,610 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-25T05:55:53,611 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-25T05:55:53,613 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-25T05:55:53,614 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-25T05:55:53,616 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-25T05:55:53,617 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-25T05:55:53,618 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-25T05:55:53,620 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-25T05:55:53,621 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-25T05:55:53,623 adding 'nmdc_runtime/lib/__init__.py' 2023-11-25T05:55:53,624 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-25T05:55:53,626 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-25T05:55:53,629 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-25T05:55:53,631 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-25T05:55:53,637 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-25T05:55:53,639 adding 'nmdc_runtime/minter/__init__.py' 2023-11-25T05:55:53,640 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-25T05:55:53,641 adding 'nmdc_runtime/minter/config.py' 2023-11-25T05:55:53,643 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-25T05:55:53,644 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-25T05:55:53,646 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-25T05:55:53,647 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-25T05:55:53,649 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-25T05:55:53,650 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-25T05:55:53,652 adding 'nmdc_runtime/site/__init__.py' 2023-11-25T05:55:53,654 adding 'nmdc_runtime/site/graphs.py' 2023-11-25T05:55:53,657 adding 'nmdc_runtime/site/ops.py' 2023-11-25T05:55:53,660 adding 'nmdc_runtime/site/repository.py' 2023-11-25T05:55:53,662 adding 'nmdc_runtime/site/resources.py' 2023-11-25T05:55:53,664 adding 'nmdc_runtime/site/util.py' 2023-11-25T05:55:53,665 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-25T05:55:53,667 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-25T05:55:53,668 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-25T05:55:53,669 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-25T05:55:53,671 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-25T05:55:53,672 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-25T05:55:53,674 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-25T05:55:53,675 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-25T05:55:53,676 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-25T05:55:53,678 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-25T05:55:53,679 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-25T05:55:53,681 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-25T05:55:53,682 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-25T05:55:53,683 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-25T05:55:53,685 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-25T05:55:53,686 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-25T05:55:53,694 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-25T05:55:53,696 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-25T05:55:53,698 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-25T05:55:53,699 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-25T05:55:53,702 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-25T05:55:53,703 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-25T05:55:53,708 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-25T05:55:53,711 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-25T05:55:53,712 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-25T05:55:53,714 adding 'nmdc_runtime/site/translation/util.py' 2023-11-25T05:55:53,716 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-25T05:55:53,717 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-25T05:55:53,718 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-25T05:55:53,720 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-25T05:55:53,721 adding 'nmdc_runtime/site/validation/util.py' 2023-11-25T05:55:53,723 adding 'nmdc_runtime-1.0.10.dist-info/LICENSE' 2023-11-25T05:55:53,725 adding 'nmdc_runtime-1.0.10.dist-info/METADATA' 2023-11-25T05:55:53,726 adding 'nmdc_runtime-1.0.10.dist-info/WHEEL' 2023-11-25T05:55:53,727 adding 'nmdc_runtime-1.0.10.dist-info/entry_points.txt' 2023-11-25T05:55:53,728 adding 'nmdc_runtime-1.0.10.dist-info/top_level.txt' 2023-11-25T05:55:53,730 adding 'nmdc_runtime-1.0.10.dist-info/RECORD' 2023-11-25T05:55:53,733 removing build/bdist.linux-armv7l/wheel 2023-11-25T05:55:53,888 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-25T05:55:53,893 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.10-py3-none-any.whl size=119841 sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf 2023-11-25T05:55:53,894 Stored in directory: /tmp/pip-ephem-wheel-cache-0m077plf/wheels/e7/c0/6e/248625004f96a59046a631fb7b585013cee379b82bc2496900 2023-11-25T05:55:53,909 Successfully built nmdc-runtime 2023-11-25T05:55:53,919 Removed build tracker: '/tmp/pip-build-tracker-rstwqfmg'