2023-11-25T06:21:05,105 Created temporary directory: /tmp/pip-build-tracker-vix_c44t 2023-11-25T06:21:05,106 Initialized build tracking at /tmp/pip-build-tracker-vix_c44t 2023-11-25T06:21:05,107 Created build tracker: /tmp/pip-build-tracker-vix_c44t 2023-11-25T06:21:05,107 Entered build tracker: /tmp/pip-build-tracker-vix_c44t 2023-11-25T06:21:05,108 Created temporary directory: /tmp/pip-wheel-ui7ow_6r 2023-11-25T06:21:05,111 Created temporary directory: /tmp/pip-ephem-wheel-cache-iedrd_8p 2023-11-25T06:21:05,134 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T06:21:05,137 2 location(s) to search for versions of mdapy: 2023-11-25T06:21:05,137 * https://pypi.org/simple/mdapy/ 2023-11-25T06:21:05,137 * https://www.piwheels.org/simple/mdapy/ 2023-11-25T06:21:05,138 Fetching project page and analyzing links: https://pypi.org/simple/mdapy/ 2023-11-25T06:21:05,138 Getting page https://pypi.org/simple/mdapy/ 2023-11-25T06:21:05,140 Found index url https://pypi.org/simple/ 2023-11-25T06:21:05,375 Fetched page https://pypi.org/simple/mdapy/ as application/vnd.pypi.simple.v1+json 2023-11-25T06:21:05,428 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f8/b3/fa3165f5371bf25f330d582412ce6111d81d16e1068c6a52fff3aeed48fd/mdapy-0.7.6-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,428 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/af/78/2606a229dc0aeee9d63eecc4aaa6768aa4d2bb0a78564e452d46b970a43a/mdapy-0.7.6-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,429 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/73/6a/640a3d6e6e3c97d06a1bf73d2b6904c3a7f1b1a9c11de29ae1e0476fe7c6/mdapy-0.7.6-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,430 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/66/fc/4d83046add95582345104742c12fb8e2a6b3a8968732fe31c8579f5a97ef/mdapy-0.7.6-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,430 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/07/5c/7a729f1a535afa699f6dfb3b0397896298f5657a64b71084398cf6cfdc49/mdapy-0.7.6-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,431 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/d5/75/b981c88ef7545d76c6319a483c42086b789bf60aa8ee28eb0607f5f8b154/mdapy-0.7.6-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,432 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ce/f4/0990d772c757a937e56751013af5908d37cff6ecb567d08ce583492c9d1b/mdapy-0.7.6-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,432 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/42/e6/0e929a981723be23cf81fcc63c7b3c01ca77c8922750a4cbbbb83e267c79/mdapy-0.7.6-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,433 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/2c/f0eb260b52cfb221f26d5c334067e6d40e62ee530257b26202bc6db7d1a5/mdapy-0.7.7-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,434 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/34/8a/93cd6fbd746a8c595d4af152a3dbcf030e6d28659886cd07a4b2f1e8e1c2/mdapy-0.7.7-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,434 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/bc/ad/c7c9bdfaa2b1fdb0053910f21cf3f7ff576a2880a6d6c17767ea9232faa3/mdapy-0.7.7-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,435 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f3/bf/9be55b37f2e836515bc7f1b8e9668dc5e2fd023cb79656647fbed4d1f1be/mdapy-0.7.7-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,436 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/8b/a9/45c25f4ab8b7ab05ec032f1dfa62c1d7804fa146c2b212b4daf059ddc6a2/mdapy-0.7.7-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,436 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/fb/54/c2934735ce4f6ea9518a1a247ffe136ce0c332794680f5fa0ea102efe3f6/mdapy-0.7.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,437 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/98/a0/c93988cb06071f1bffd1456c70ff7d4c44097118770f0b48ff6258eb2e70/mdapy-0.7.7-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,437 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/63/57/d03d7cc497f604328eebe8969f74599617857dd3d2ab3625273b1c7186de/mdapy-0.7.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7) 2023-11-25T06:21:05,438 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/6d/8c/4139c161385c8f21777eb003899d40ca9da4223cc323930d278703c99d7c/mdapy-0.7.8-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,438 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/47/83/350174a1238e5d982e7d5a58966ffb1b142fb1c65d15359d8b58b3455b7a/mdapy-0.7.8-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,439 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/52/f6/c3fe6f103679c6ad7285525645c4bf14ae435a289b08a3830b374a81cecf/mdapy-0.7.8-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,439 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/b2/50/dbac02eb7159c6e96f0d5bbb97ae538f52fc7ec25423e600caa81aeab089/mdapy-0.7.8-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,440 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/27/48/dc4cb441bf2e06da3eecfaa9b13554f8a6282312c842f271b6bf3059e331/mdapy-0.7.8-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,441 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/14/24/39fced0a574be250cfeb26e75acf14336ffb3481dc072b7eb6afcf8ad699/mdapy-0.7.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,441 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f6/ea/8e024914da8f894f8d5ab36f8ff5a1e6eadbd92fdc38210b84ae7e2f17ce/mdapy-0.7.8-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,442 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/64/37/535f581360ef0de48cfffd4b513b2aa8f0614c98cbe5feef87a5f3930bd8/mdapy-0.7.9-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,445 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f9/b2/72561dbdc5fa58ef0d747248bd751325b02c8d4c7baa1519bd09d57bbc8e/mdapy-0.7.9-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,445 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/13/4e/be694bee4fffcd3f5600fd814b608c09e61b3c46a13fc84d4c521f6e6d1e/mdapy-0.7.9-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.7,<3.11) 2023-11-25T06:21:05,446 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/68/b9/befe67aef0739dee731d7811e5a0328ad11c9447388a46c3633b19927179/mdapy-0.9.4-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,563 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/66/9e/6a36914774171c5f74fcbe7bdf5042f9bfaa5912a4e49be3a77d95bfe351/mdapy-0.9.4-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,563 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c1/2f/50b9bf60d0b16e8fabe229bd74678ddcbd89e5e3d7b952b7507d2d57a7ac/mdapy-0.9.4-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,564 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/0f/57/be639c1c208d2a0bab760b14c195fb6a99442204d87079ca6fe370d92090/mdapy-0.9.4-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,565 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ee/34/52731d47359c57e7de8726b76c86d08d0ae38733e492fe520bb1a6510564/mdapy-0.9.4-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,565 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/db/1c/62d2cd406974d3002e567d7e7bc6f1cf7e94e2855c93cd979b0d8519825e/mdapy-0.9.4-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,566 Found link https://files.pythonhosted.org/packages/84/f9/d5574b9b51e042d351cbc1ce43fdc98460b5c6ab4ccff5010dc1d5d36af3/mdapy-0.9.4.tar.gz (from https://pypi.org/simple/mdapy/) 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https://files.pythonhosted.org/packages/26/8e/5f2785a5803e2e81cc8ed07384ee84aad2fee03157a9ddcfc261b63eb08d/mdapy-0.9.7-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,595 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/a3/15/0d9e037c1fe1f7cd5749a705aad21f6e02b298dd53f1ef62a78ea4651085/mdapy-0.9.7-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,596 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/dd/c1/c65a829bbbb9c70235c328516f22d973b1f58275dc273eb3a59cf93d382a/mdapy-0.9.7-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,596 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c2/f1/6fb9976e1532b2f833738fdf3161a29372b397c156e5af00b40295dfac18/mdapy-0.9.7-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,597 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/54/db/36e00ad44f1eff759b36d959792e5b9988819117b1bf3150e89ffcd8a807/mdapy-0.9.7-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,598 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f6/db/1d74a7de82037455bef69d8be09f2e4eb073452d3cccf7bdf0fb3f4d256f/mdapy-0.9.7-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,599 Found link https://files.pythonhosted.org/packages/06/d7/cae66137bf8e05f3ec2af023812a52b25319c0dac8d00aa12b6e27ec1686/mdapy-0.9.7.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12), version: 0.9.7 2023-11-25T06:21:05,600 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/06/d9/d9dd171c2353dbaad1b9a66bc83931933ad1882bb65a9713bd15e32ab5c5/mdapy-0.9.8-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,600 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/de/0c/6ddd695d54c082b12f3060409bb312f8ee9fda9763bf9b9dcb7e9419f3ce/mdapy-0.9.8-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,601 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/19/aa/7ee72d4c27d681d39686b1352a0e163cf7b7a4b4439316f9fa40e25758ba/mdapy-0.9.8-cp310-cp310-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,601 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/91/8d/b5982936a03ccd5bd1d6f543f218b4146df435b785a3f58df0323a19c2a3/mdapy-0.9.8-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,601 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/54/a7/c985e3ab90d4ff88f6f0a0e8012eaa0ee9c0d7f9573af79a2399d5c65074/mdapy-0.9.8-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,602 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/a7/b9/a721ec05b22f7374de51554647165e1405b11616aafce0650b2c4c2df3fb/mdapy-0.9.8-cp311-cp311-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,603 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/75/40/231299096c5ee40e78bd4bb50c6943dbdb1554d67374d825f8c27290674f/mdapy-0.9.8-cp311-cp311-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,603 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/00/1a/0cf75dae02bfb040d08fd433734e5b3f29aed7fcd785e418e0ab928e2b9c/mdapy-0.9.8-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,604 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/7b/26/e5e7813e1804fd95cd0ffccbf7d5b9eb0e81e6c2d61a180afab2fb6b6c63/mdapy-0.9.8-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,604 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/2b/19/3ed5e602d668d715a05fe663264b22dcc8a48859538af144ed04b0c6102d/mdapy-0.9.8-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,605 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/88/4c/3e851691595d39128b4ba6b254feb3be31adc2ac0cba13ac1fc6a0469deb/mdapy-0.9.8-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,606 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/07/ea/7376ce087c5433a84948acc40697c0d4fe079545f8974d3358dd7bc40421/mdapy-0.9.8-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,607 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/cd/f3/db2c34ba63c1e7855c681b6a2246c45eba5ab2ac1ed27f1145e2d37843d2/mdapy-0.9.8-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,607 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/a1/71/bf73f33e8f1fc97516c0e9d62f22b067c4db6ed2fbffc21a0222cc1a848c/mdapy-0.9.8-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,608 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/1a/2f/a3026cf0b2031e26fd8041fe3600db3fe0d60364ceaf5b999e155ff05092/mdapy-0.9.8-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,608 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/5a/3c/1a8e6084a30afb42a57bad325fcfa3eb3628a1e5983c142075d15ed98cea/mdapy-0.9.8-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,609 Found link https://files.pythonhosted.org/packages/30/da/39c197571d39140c1df94449bbcf16b86a62ce85ed2899e3e0098e41e22b/mdapy-0.9.8.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12), version: 0.9.8 2023-11-25T06:21:05,610 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/21/b7/7bfd2e92c498f06b63c0885ec440bfbbdb62686c09cfd84ad49ff9134d29/mdapy-0.9.9-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,610 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/82/30/6c275df8a492b1759c2de3ad535c99b560fa03e18ea08f7b237142995817/mdapy-0.9.9-cp310-cp310-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,611 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/2c/9f/071ae600e9e4c49199883d252f3e3602d3f4d7231dd8a1f90970e6f285ff/mdapy-0.9.9-cp310-cp310-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,612 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/29/32/5400a694bea2dec5a8f1f68f7da17ee006d8a0d66bc9b27e80e4f92ce28a/mdapy-0.9.9-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,612 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/94/b7/a73f62066fed55b09bed47c3c72fefd3669ac62cdc9b43da9c6b92aa465f/mdapy-0.9.9-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,613 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/17/75/e3f3a2910a94fd1f996fa814a5ba018e51eed5388d9686b0602db6117845/mdapy-0.9.9-cp311-cp311-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,614 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/09/e7/8a10e8f1ff0d39a262b1a35c61ac4c6654c246283e3440777c7d5c5bfe52/mdapy-0.9.9-cp311-cp311-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,614 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/77/2d/81eae4a1dccb57f8c5a9ed75bc7b91162dbdac0da02be8aa1cfe1be6cb17/mdapy-0.9.9-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,615 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ec/b6/e835b7f942a6392d1c031c10c4fb833ae0bc54b8fe0e96e1a207d2203634/mdapy-0.9.9-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,615 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/ea/87/b7784c0694a627969176056f363f7076ce80b3af1b390d12f9b3da64190c/mdapy-0.9.9-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,616 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/d4/57/ceb9eeed3250ac0fe64fd327ebd98e5b0064320e3815e689d62a7535916c/mdapy-0.9.9-cp38-cp38-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,617 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/56/5a/cc72507f51a47ab32130bcbd6791be025b77e18b14fbdb27dac6d8c3d614/mdapy-0.9.9-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,617 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/cf/fc/5e78b7a34dbaea9c2eccc5d95ed7649a63eaee81b0bdef0e748052742746/mdapy-0.9.9-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,618 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/78/b4/237dc2467a62ac2285cec8309691aae51268f3f262dcadf9275df276a8ff/mdapy-0.9.9-cp39-cp39-manylinux1_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,618 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/df/79/1f6c152fdb0ea7a1cc92ab7ec0cb08e6cfc515df3e993b3d48df95d802ea/mdapy-0.9.9-cp39-cp39-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,619 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/93/29/58808cd473e279d135710e8097e336975e234b5d5d530ebdcfc8c17e0f6c/mdapy-0.9.9-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,620 Found link https://files.pythonhosted.org/packages/0d/a6/03cb123e3f24cde08eaf401b4658862b10eb9fe8431d5f87d8b08257888a/mdapy-0.9.9.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.8,<3.12), version: 0.9.9 2023-11-25T06:21:05,621 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdapy/ 2023-11-25T06:21:05,621 Getting page https://www.piwheels.org/simple/mdapy/ 2023-11-25T06:21:05,623 Found index url https://www.piwheels.org/simple/ 2023-11-25T06:21:05,789 Fetched page https://www.piwheels.org/simple/mdapy/ as text/html 2023-11-25T06:21:05,799 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=934eb85884f8a3f5c3ab8c80620aa4edb9f892ef0fee92f47feef393af318048 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,799 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=934eb85884f8a3f5c3ab8c80620aa4edb9f892ef0fee92f47feef393af318048 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,800 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.8-cp311-cp311-linux_armv7l.whl#sha256=5b1298e0bbb6401c52c66383eecafa81e5f2e859f9f22a317a532c20952f09e6 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,801 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.8-cp311-cp311-linux_armv6l.whl#sha256=5b1298e0bbb6401c52c66383eecafa81e5f2e859f9f22a317a532c20952f09e6 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,801 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=e05170208bd956948fcb034561ecc55f9c6491b62f8d32fb7a6b55b7fa5feaea (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,802 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=e05170208bd956948fcb034561ecc55f9c6491b62f8d32fb7a6b55b7fa5feaea (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,802 Skipping link: No binaries permitted for mdapy: 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https://www.piwheels.org/simple/mdapy/mdapy-0.9.4-cp311-cp311-linux_armv7l.whl#sha256=0fd5eff1452802d26df080e4a364476ec70dd73184afdef65d3569aaeaefaacd (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,810 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.4-cp311-cp311-linux_armv6l.whl#sha256=0fd5eff1452802d26df080e4a364476ec70dd73184afdef65d3569aaeaefaacd (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,810 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=60b547ad8a094bed5c30220348077063f31aa610cd786220c201b113ce3bcce7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,810 Skipping link: No binaries permitted for mdapy: 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https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,812 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,813 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.2-cp311-cp311-linux_armv7l.whl#sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,813 Skipping link: No binaries permitted for mdapy: 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https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,816 Skipping link: No binaries permitted for mdapy: https://www.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2023-11-25T06:21:05,816 Skipping link: not a file: https://www.piwheels.org/simple/mdapy/ 2023-11-25T06:21:05,817 Skipping link: not a file: https://pypi.org/simple/mdapy/ 2023-11-25T06:21:05,836 Given no hashes to check 1 links for project 'mdapy': discarding no candidates 2023-11-25T06:21:05,854 Collecting mdapy==0.9.9 2023-11-25T06:21:05,857 Created temporary directory: /tmp/pip-unpack-56sthp9t 2023-11-25T06:21:06,075 Downloading mdapy-0.9.9.tar.gz (4.1 MB) 2023-11-25T06:21:09,513 Added mdapy==0.9.9 from https://files.pythonhosted.org/packages/0d/a6/03cb123e3f24cde08eaf401b4658862b10eb9fe8431d5f87d8b08257888a/mdapy-0.9.9.tar.gz to build tracker '/tmp/pip-build-tracker-vix_c44t' 2023-11-25T06:21:09,518 Created temporary directory: /tmp/pip-build-env-pl3fo3wz 2023-11-25T06:21:09,522 Installing build dependencies: started 2023-11-25T06:21:09,524 Running command pip subprocess to install build dependencies 2023-11-25T06:21:10,672 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-25T06:21:11,178 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T06:21:12,639 Collecting setuptools 2023-11-25T06:21:12,640 Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/bb/e1/ed2dd0850446b8697ad28d118df885ad04140c64ace06c4bd559f7c8a94f/setuptools-69.0.2-py3-none-any.whl.metadata 2023-11-25T06:21:12,646 Using cached setuptools-69.0.2-py3-none-any.whl.metadata (6.3 kB) 2023-11-25T06:21:12,840 Collecting wheel 2023-11-25T06:21:12,854 Using cached https://www.piwheels.org/simple/wheel/wheel-0.41.3-py3-none-any.whl (65 kB) 2023-11-25T06:21:13,015 Collecting pybind11 2023-11-25T06:21:13,034 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.11.1-py3-none-any.whl (227 kB) 2023-11-25T06:21:13,210 Using cached setuptools-69.0.2-py3-none-any.whl (819 kB) 2023-11-25T06:21:15,744 Installing collected packages: wheel, setuptools, pybind11 2023-11-25T06:21:15,973 Creating /tmp/pip-build-env-pl3fo3wz/overlay/local/bin 2023-11-25T06:21:15,975 changing mode of /tmp/pip-build-env-pl3fo3wz/overlay/local/bin/wheel to 755 2023-11-25T06:21:19,096 changing mode of /tmp/pip-build-env-pl3fo3wz/overlay/local/bin/pybind11-config to 755 2023-11-25T06:21:19,119 Successfully installed pybind11-2.11.1 setuptools-69.0.2 wheel-0.41.3 2023-11-25T06:21:19,693 Installing build dependencies: finished with status 'done' 2023-11-25T06:21:19,696 Getting requirements to build wheel: started 2023-11-25T06:21:19,697 Running command Getting requirements to build wheel 2023-11-25T06:21:20,232 running egg_info 2023-11-25T06:21:20,236 writing mdapy.egg-info/PKG-INFO 2023-11-25T06:21:20,242 writing dependency_links to mdapy.egg-info/dependency_links.txt 2023-11-25T06:21:20,245 writing requirements to mdapy.egg-info/requires.txt 2023-11-25T06:21:20,246 writing top-level names to mdapy.egg-info/top_level.txt 2023-11-25T06:21:20,270 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2023-11-25T06:21:20,287 adding license file 'LICENSE' 2023-11-25T06:21:20,294 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2023-11-25T06:21:20,374 Getting requirements to build wheel: finished with status 'done' 2023-11-25T06:21:20,387 Created temporary directory: /tmp/pip-modern-metadata-zc9y7b1y 2023-11-25T06:21:20,390 Preparing metadata (pyproject.toml): started 2023-11-25T06:21:20,392 Running command Preparing metadata (pyproject.toml) 2023-11-25T06:21:20,881 running dist_info 2023-11-25T06:21:20,900 creating /tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info 2023-11-25T06:21:20,905 writing /tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/PKG-INFO 2023-11-25T06:21:20,910 writing dependency_links to /tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/dependency_links.txt 2023-11-25T06:21:20,913 writing requirements to /tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/requires.txt 2023-11-25T06:21:20,914 writing top-level names to /tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/top_level.txt 2023-11-25T06:21:20,916 writing manifest file '/tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/SOURCES.txt' 2023-11-25T06:21:20,935 reading manifest file '/tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/SOURCES.txt' 2023-11-25T06:21:20,937 adding license file 'LICENSE' 2023-11-25T06:21:20,940 writing manifest file '/tmp/pip-modern-metadata-zc9y7b1y/mdapy.egg-info/SOURCES.txt' 2023-11-25T06:21:20,942 creating '/tmp/pip-modern-metadata-zc9y7b1y/mdapy-0.9.9.dist-info' 2023-11-25T06:21:21,131 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-25T06:21:21,135 Source in /tmp/pip-wheel-ui7ow_6r/mdapy_acb6c245c9ac40fc8c5c4fafd2cdbad7 has version 0.9.9, which satisfies requirement mdapy==0.9.9 from https://files.pythonhosted.org/packages/0d/a6/03cb123e3f24cde08eaf401b4658862b10eb9fe8431d5f87d8b08257888a/mdapy-0.9.9.tar.gz 2023-11-25T06:21:21,136 Removed mdapy==0.9.9 from https://files.pythonhosted.org/packages/0d/a6/03cb123e3f24cde08eaf401b4658862b10eb9fe8431d5f87d8b08257888a/mdapy-0.9.9.tar.gz from build tracker '/tmp/pip-build-tracker-vix_c44t' 2023-11-25T06:21:21,142 Created temporary directory: /tmp/pip-unpack-n62798fm 2023-11-25T06:21:21,143 Created temporary directory: /tmp/pip-unpack-hwu40edv 2023-11-25T06:21:21,166 Building wheels for collected packages: mdapy 2023-11-25T06:21:21,170 Created temporary directory: /tmp/pip-wheel-h7bh5gs3 2023-11-25T06:21:21,171 Destination directory: /tmp/pip-wheel-h7bh5gs3 2023-11-25T06:21:21,173 Building wheel for mdapy (pyproject.toml): started 2023-11-25T06:21:21,174 Running command Building wheel for mdapy (pyproject.toml) 2023-11-25T06:21:21,720 running bdist_wheel 2023-11-25T06:21:21,749 running build 2023-11-25T06:21:21,750 running build_py 2023-11-25T06:21:21,758 creating build 2023-11-25T06:21:21,759 creating build/lib.linux-armv7l-cpython-311 2023-11-25T06:21:21,759 creating build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,760 copying mdapy/nearest_neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,763 copying mdapy/eam_generate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,765 copying mdapy/cluser_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,768 copying mdapy/centro_symmetry_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,770 copying mdapy/temperature.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,772 copying mdapy/system.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,776 copying mdapy/spatial_binning.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,778 copying mdapy/polyhedral_template_matching.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,780 copying mdapy/visualize.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,782 copying mdapy/void_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,785 copying mdapy/entropy.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,787 copying mdapy/lindemann_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,789 copying mdapy/tool_function.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,792 copying mdapy/pigz.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,794 copying mdapy/calculator.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,797 copying mdapy/voronoi_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,799 copying mdapy/replicate.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,802 copying mdapy/neighbor.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,804 copying mdapy/potential.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,806 copying mdapy/load_save_data.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,809 copying mdapy/common_neighbor_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,811 copying mdapy/plotset.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,814 copying mdapy/__init__.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,816 copying mdapy/eam_average.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,818 copying mdapy/lattice_maker.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,822 copying mdapy/pair_distribution.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,824 copying mdapy/create_polycrystalline.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,827 copying mdapy/identify_SFs_TBs.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,830 copying mdapy/warren_cowley_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,832 copying mdapy/mean_squared_displacement.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,834 copying mdapy/common_neighbor_parameter.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,837 copying mdapy/steinhardt_bond_orientation.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,839 copying mdapy/ackland_jones_analysis.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,842 copying mdapy/timer.py -> build/lib.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,845 running build_ext 2023-11-25T06:21:21,900 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c flagcheck.cpp -o flagcheck.o -std=c++17 2023-11-25T06:21:21,981 building '_cluster_analysis' extension 2023-11-25T06:21:21,981 creating build/temp.linux-armv7l-cpython-311 2023-11-25T06:21:21,982 creating build/temp.linux-armv7l-cpython-311/mdapy 2023-11-25T06:21:21,983 creating build/temp.linux-armv7l-cpython-311/mdapy/cluster 2023-11-25T06:21:21,987 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/cluster/_cluster.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -std=c++17 -fvisibility=hidden -g0 2023-11-25T06:21:41,103 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/cluster/_cluster.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_cluster_analysis.cpython-311-arm-linux-gnueabihf.so 2023-11-25T06:21:41,350 building '_voronoi_analysis' extension 2023-11-25T06:21:41,351 creating build/temp.linux-armv7l-cpython-311/mdapy/voronoi 2023-11-25T06:21:41,351 creating build/temp.linux-armv7l-cpython-311/thirdparty 2023-11-25T06:21:41,352 creating build/temp.linux-armv7l-cpython-311/thirdparty/voro++ 2023-11-25T06:21:41,355 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/voronoi/_voro.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:21:41,356 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/voro++ -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/voro++/voro++.cc -o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:21:42,662 In file included from thirdparty/voro++/container_2d.cc:10, 2023-11-25T06:21:42,663 from thirdparty/voro++/voro++.cc:10: 2023-11-25T06:21:42,664 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,665 16 | class container_base_2d::iterator : public std::iterator { 2023-11-25T06:21:42,665 | ^~~~~~~~ 2023-11-25T06:21:42,666 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2023-11-25T06:21:42,667 from /usr/include/c++/12/vector:60, 2023-11-25T06:21:42,668 from thirdparty/voro++/cell_2d.hh:11, 2023-11-25T06:21:42,668 from thirdparty/voro++/cell_2d.cc:7, 2023-11-25T06:21:42,669 from thirdparty/voro++/voro++.cc:7: 2023-11-25T06:21:42,670 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,670 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,671 | ^~~~~~~~ 2023-11-25T06:21:42,672 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,672 21 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,673 | ^~~~~~~~ 2023-11-25T06:21:42,673 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,674 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,675 | ^~~~~~~~ 2023-11-25T06:21:42,676 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,677 22 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,678 | ^~~~~~~~ 2023-11-25T06:21:42,679 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,680 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,680 | ^~~~~~~~ 2023-11-25T06:21:42,681 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,682 23 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,683 | ^~~~~~~~ 2023-11-25T06:21:42,684 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,684 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,685 | ^~~~~~~~ 2023-11-25T06:21:42,687 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,688 153 | class container_base_2d::iterator_subset : public std::iterator { 2023-11-25T06:21:42,689 | ^~~~~~~~ 2023-11-25T06:21:42,690 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,691 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,692 | ^~~~~~~~ 2023-11-25T06:21:42,692 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,693 155 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,694 | ^~~~~~~~ 2023-11-25T06:21:42,695 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,695 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,696 | ^~~~~~~~ 2023-11-25T06:21:42,697 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,697 156 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,698 | ^~~~~~~~ 2023-11-25T06:21:42,699 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,699 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,700 | ^~~~~~~~ 2023-11-25T06:21:42,701 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,701 157 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,702 | ^~~~~~~~ 2023-11-25T06:21:42,703 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,704 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,705 | ^~~~~~~~ 2023-11-25T06:21:42,705 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,706 246 | class container_base_2d::iterator_order : public std::iterator { 2023-11-25T06:21:42,707 | ^~~~~~~~ 2023-11-25T06:21:42,708 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,709 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,710 | ^~~~~~~~ 2023-11-25T06:21:42,711 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,712 248 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,712 | ^~~~~~~~ 2023-11-25T06:21:42,713 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,714 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,715 | ^~~~~~~~ 2023-11-25T06:21:42,715 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,716 249 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,717 | ^~~~~~~~ 2023-11-25T06:21:42,718 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,719 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,720 | ^~~~~~~~ 2023-11-25T06:21:42,721 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,721 250 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,722 | ^~~~~~~~ 2023-11-25T06:21:42,723 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,723 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,724 | ^~~~~~~~ 2023-11-25T06:21:42,826 In file included from thirdparty/voro++/container_3d.cc:10, 2023-11-25T06:21:42,827 from thirdparty/voro++/voro++.cc:11: 2023-11-25T06:21:42,828 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,828 17 | class container_base_3d::iterator : public std::iterator { 2023-11-25T06:21:42,829 | ^~~~~~~~ 2023-11-25T06:21:42,830 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,831 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,831 | ^~~~~~~~ 2023-11-25T06:21:42,832 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,833 22 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,834 | ^~~~~~~~ 2023-11-25T06:21:42,835 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,836 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,836 | ^~~~~~~~ 2023-11-25T06:21:42,837 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,838 23 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,839 | ^~~~~~~~ 2023-11-25T06:21:42,840 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,840 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,841 | ^~~~~~~~ 2023-11-25T06:21:42,842 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,843 24 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,844 | ^~~~~~~~ 2023-11-25T06:21:42,845 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,845 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,846 | ^~~~~~~~ 2023-11-25T06:21:42,847 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,848 159 | class container_base_3d::iterator_subset : public std::iterator { 2023-11-25T06:21:42,849 | ^~~~~~~~ 2023-11-25T06:21:42,850 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,850 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,851 | ^~~~~~~~ 2023-11-25T06:21:42,852 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,852 161 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,853 | ^~~~~~~~ 2023-11-25T06:21:42,854 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,854 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,855 | ^~~~~~~~ 2023-11-25T06:21:42,856 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,856 162 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,857 | ^~~~~~~~ 2023-11-25T06:21:42,858 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,858 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,859 | ^~~~~~~~ 2023-11-25T06:21:42,860 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,861 163 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,862 | ^~~~~~~~ 2023-11-25T06:21:42,863 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,864 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,864 | ^~~~~~~~ 2023-11-25T06:21:42,865 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,866 252 | class container_base_3d::iterator_order : public std::iterator { 2023-11-25T06:21:42,867 | ^~~~~~~~ 2023-11-25T06:21:42,868 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,869 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,870 | ^~~~~~~~ 2023-11-25T06:21:42,871 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,871 254 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,872 | ^~~~~~~~ 2023-11-25T06:21:42,873 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,874 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,875 | ^~~~~~~~ 2023-11-25T06:21:42,876 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,876 255 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,877 | ^~~~~~~~ 2023-11-25T06:21:42,878 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,879 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,880 | ^~~~~~~~ 2023-11-25T06:21:42,880 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,881 256 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,882 | ^~~~~~~~ 2023-11-25T06:21:42,883 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,883 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,884 | ^~~~~~~~ 2023-11-25T06:21:42,885 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,885 365 | class container_triclinic_base::iterator : public std::iterator 2023-11-25T06:21:42,886 | ^~~~~~~~ 2023-11-25T06:21:42,887 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,888 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,889 | ^~~~~~~~ 2023-11-25T06:21:42,889 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,890 378 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,891 | ^~~~~~~~ 2023-11-25T06:21:42,892 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,893 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,894 | ^~~~~~~~ 2023-11-25T06:21:42,895 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,896 379 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,897 | ^~~~~~~~ 2023-11-25T06:21:42,897 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,898 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,899 | ^~~~~~~~ 2023-11-25T06:21:42,900 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,901 380 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,902 | ^~~~~~~~ 2023-11-25T06:21:42,904 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,906 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,908 | ^~~~~~~~ 2023-11-25T06:21:42,909 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,912 450 | class container_triclinic_base::iterator_order : public std::iterator 2023-11-25T06:21:42,914 | ^~~~~~~~ 2023-11-25T06:21:42,915 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,917 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,919 | ^~~~~~~~ 2023-11-25T06:21:42,920 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,921 458 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,923 | ^~~~~~~~ 2023-11-25T06:21:42,925 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,926 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,927 | ^~~~~~~~ 2023-11-25T06:21:42,928 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,929 459 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,930 | ^~~~~~~~ 2023-11-25T06:21:42,931 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,932 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,933 | ^~~~~~~~ 2023-11-25T06:21:42,935 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,937 460 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,939 | ^~~~~~~~ 2023-11-25T06:21:42,941 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,942 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,944 | ^~~~~~~~ 2023-11-25T06:21:42,946 In file included from thirdparty/voro++/voro++.hh:337, 2023-11-25T06:21:42,947 from mdapy/voronoi/_voro.cpp:6: 2023-11-25T06:21:42,948 thirdparty/voro++/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,949 16 | class container_base_2d::iterator : public std::iterator { 2023-11-25T06:21:42,950 | ^~~~~~~~ 2023-11-25T06:21:42,951 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2023-11-25T06:21:42,952 from /usr/include/c++/12/vector:60, 2023-11-25T06:21:42,953 from thirdparty/voro++/common.hh:12, 2023-11-25T06:21:42,954 from thirdparty/voro++/voro++.hh:318: 2023-11-25T06:21:42,955 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,956 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,957 | ^~~~~~~~ 2023-11-25T06:21:42,959 thirdparty/voro++/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,960 21 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,962 | ^~~~~~~~ 2023-11-25T06:21:42,962 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,963 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,964 | ^~~~~~~~ 2023-11-25T06:21:42,966 thirdparty/voro++/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,967 22 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,968 | ^~~~~~~~ 2023-11-25T06:21:42,969 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,970 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,971 | ^~~~~~~~ 2023-11-25T06:21:42,972 thirdparty/voro++/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,973 23 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,974 | ^~~~~~~~ 2023-11-25T06:21:42,975 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,977 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,978 | ^~~~~~~~ 2023-11-25T06:21:42,979 thirdparty/voro++/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,980 153 | class container_base_2d::iterator_subset : public std::iterator { 2023-11-25T06:21:42,980 | ^~~~~~~~ 2023-11-25T06:21:42,981 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,982 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,983 | ^~~~~~~~ 2023-11-25T06:21:42,984 thirdparty/voro++/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,985 155 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:42,986 | ^~~~~~~~ 2023-11-25T06:21:42,986 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,987 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,988 | ^~~~~~~~ 2023-11-25T06:21:42,988 thirdparty/voro++/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,989 156 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:42,990 | ^~~~~~~~ 2023-11-25T06:21:42,991 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,992 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,993 | ^~~~~~~~ 2023-11-25T06:21:42,994 thirdparty/voro++/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,994 157 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:42,995 | ^~~~~~~~ 2023-11-25T06:21:42,996 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:42,996 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:42,997 | ^~~~~~~~ 2023-11-25T06:21:42,997 thirdparty/voro++/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:42,998 246 | class container_base_2d::iterator_order : public std::iterator { 2023-11-25T06:21:42,999 | ^~~~~~~~ 2023-11-25T06:21:43,000 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,000 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,001 | ^~~~~~~~ 2023-11-25T06:21:43,002 thirdparty/voro++/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,002 248 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,003 | ^~~~~~~~ 2023-11-25T06:21:43,004 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,004 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,005 | ^~~~~~~~ 2023-11-25T06:21:43,006 thirdparty/voro++/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,006 249 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,007 | ^~~~~~~~ 2023-11-25T06:21:43,008 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,009 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,010 | ^~~~~~~~ 2023-11-25T06:21:43,010 thirdparty/voro++/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,011 250 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,012 | ^~~~~~~~ 2023-11-25T06:21:43,012 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,013 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,014 | ^~~~~~~~ 2023-11-25T06:21:43,014 In file included from thirdparty/voro++/voro++.hh:338: 2023-11-25T06:21:43,015 thirdparty/voro++/iter_3d.hh:17:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,016 17 | class container_base_3d::iterator : public std::iterator { 2023-11-25T06:21:43,018 | ^~~~~~~~ 2023-11-25T06:21:43,019 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,020 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,020 | ^~~~~~~~ 2023-11-25T06:21:43,021 thirdparty/voro++/iter_3d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,021 22 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,022 | ^~~~~~~~ 2023-11-25T06:21:43,023 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,023 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,024 | ^~~~~~~~ 2023-11-25T06:21:43,024 thirdparty/voro++/iter_3d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,025 23 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,026 | ^~~~~~~~ 2023-11-25T06:21:43,026 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,027 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,028 | ^~~~~~~~ 2023-11-25T06:21:43,029 thirdparty/voro++/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,029 24 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,030 | ^~~~~~~~ 2023-11-25T06:21:43,031 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,032 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,032 | ^~~~~~~~ 2023-11-25T06:21:43,033 thirdparty/voro++/iter_3d.hh:159:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,034 159 | class container_base_3d::iterator_subset : public std::iterator { 2023-11-25T06:21:43,035 | ^~~~~~~~ 2023-11-25T06:21:43,036 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,036 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,037 | ^~~~~~~~ 2023-11-25T06:21:43,038 thirdparty/voro++/iter_3d.hh:161:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,038 161 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,039 | ^~~~~~~~ 2023-11-25T06:21:43,040 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,041 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,042 | ^~~~~~~~ 2023-11-25T06:21:43,043 thirdparty/voro++/iter_3d.hh:162:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,043 162 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,044 | ^~~~~~~~ 2023-11-25T06:21:43,045 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,046 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,047 | ^~~~~~~~ 2023-11-25T06:21:43,047 thirdparty/voro++/iter_3d.hh:163:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,048 163 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,048 | ^~~~~~~~ 2023-11-25T06:21:43,049 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,050 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,050 | ^~~~~~~~ 2023-11-25T06:21:43,051 thirdparty/voro++/iter_3d.hh:252:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,052 252 | class container_base_3d::iterator_order : public std::iterator { 2023-11-25T06:21:43,052 | ^~~~~~~~ 2023-11-25T06:21:43,053 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,054 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,054 | ^~~~~~~~ 2023-11-25T06:21:43,055 thirdparty/voro++/iter_3d.hh:254:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,056 254 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,057 | ^~~~~~~~ 2023-11-25T06:21:43,057 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,058 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,059 | ^~~~~~~~ 2023-11-25T06:21:43,060 thirdparty/voro++/iter_3d.hh:255:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,061 255 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,062 | ^~~~~~~~ 2023-11-25T06:21:43,063 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,064 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,064 | ^~~~~~~~ 2023-11-25T06:21:43,065 thirdparty/voro++/iter_3d.hh:256:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,066 256 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,067 | ^~~~~~~~ 2023-11-25T06:21:43,068 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,069 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,069 | ^~~~~~~~ 2023-11-25T06:21:43,070 thirdparty/voro++/iter_3d.hh:365:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,071 365 | class container_triclinic_base::iterator : public std::iterator 2023-11-25T06:21:43,072 | ^~~~~~~~ 2023-11-25T06:21:43,073 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,074 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,074 | ^~~~~~~~ 2023-11-25T06:21:43,075 thirdparty/voro++/iter_3d.hh:378:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,076 378 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,076 | ^~~~~~~~ 2023-11-25T06:21:43,077 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,078 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,078 | ^~~~~~~~ 2023-11-25T06:21:43,079 thirdparty/voro++/iter_3d.hh:379:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,080 379 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,081 | ^~~~~~~~ 2023-11-25T06:21:43,081 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,082 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,083 | ^~~~~~~~ 2023-11-25T06:21:43,084 thirdparty/voro++/iter_3d.hh:380:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,085 380 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,086 | ^~~~~~~~ 2023-11-25T06:21:43,087 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,087 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,088 | ^~~~~~~~ 2023-11-25T06:21:43,089 thirdparty/voro++/iter_3d.hh:450:62: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,090 450 | class container_triclinic_base::iterator_order : public std::iterator 2023-11-25T06:21:43,091 | ^~~~~~~~ 2023-11-25T06:21:43,091 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,092 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,093 | ^~~~~~~~ 2023-11-25T06:21:43,094 thirdparty/voro++/iter_3d.hh:458:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,095 458 | typedef typename std::iterator::pointer pointer; 2023-11-25T06:21:43,096 | ^~~~~~~~ 2023-11-25T06:21:43,097 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,098 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,098 | ^~~~~~~~ 2023-11-25T06:21:43,099 thirdparty/voro++/iter_3d.hh:459:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,100 459 | typedef typename std::iterator::reference reference; 2023-11-25T06:21:43,101 | ^~~~~~~~ 2023-11-25T06:21:43,102 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,102 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,103 | ^~~~~~~~ 2023-11-25T06:21:43,104 thirdparty/voro++/iter_3d.hh:460:27: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2023-11-25T06:21:43,104 460 | typedef typename std::iterator::difference_type difference_type; 2023-11-25T06:21:43,105 | ^~~~~~~~ 2023-11-25T06:21:43,106 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2023-11-25T06:21:43,106 127 | struct _GLIBCXX17_DEPRECATED iterator 2023-11-25T06:21:43,107 | ^~~~~~~~ 2023-11-25T06:21:48,825 mdapy/voronoi/_voro.cpp: In function ‘std::tuple >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::allocator > > >, std::allocator >, std::allocator > > > > >, std::vector >, std::vector >, std::vector >, std::allocator > > > > get_cell_info(pybind11::array, pybind11::array, pybind11::array, int)’: 2023-11-25T06:21:48,857 mdapy/voronoi/_voro.cpp:114:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2023-11-25T06:21:48,861 114 | while (j < face_index_vector.size()) 2023-11-25T06:21:48,937 | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-11-25T06:22:12,376 In file included from /usr/include/c++/12/vector:70: 2023-11-25T06:22:12,377 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2023-11-25T06:22:12,377 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-11-25T06:22:12,378 439 | vector<_Tp, _Alloc>:: 2023-11-25T06:22:12,379 | ^~~~~~~~~~~~~~~~~~~ 2023-11-25T06:22:23,446 In file included from /usr/include/c++/12/vector:64: 2023-11-25T06:22:23,447 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2023-11-25T06:22:23,447 inlined from ‘void voro::unitcell::images(std::vector&, std::vector&)’ at thirdparty/voro++/unitcell.cc:147:25: 2023-11-25T06:22:23,448 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-11-25T06:22:23,449 1287 | _M_realloc_insert(end(), __x); 2023-11-25T06:22:23,449 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2023-11-25T06:22:23,910 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/voronoi/_voro.o build/temp.linux-armv7l-cpython-311/thirdparty/voro++/voro++.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so -fopenmp 2023-11-25T06:22:24,223 building '_ptm' extension 2023-11-25T06:22:24,224 creating build/temp.linux-armv7l-cpython-311/mdapy/ptm 2023-11-25T06:22:24,225 creating build/temp.linux-armv7l-cpython-311/thirdparty/ptm 2023-11-25T06:22:24,229 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/ptm/_ptm.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:24,229 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_alloy_types.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:24,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_canonical_coloured.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:24,231 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_constants.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:24,349 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_convex_hull_incremental.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:25,085 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_deformation_gradient.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:25,903 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:25,944 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_graph_tools.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:26,271 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_index.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:26,279 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_initialize_data.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:26,610 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_neighbour_ordering.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:27,294 thirdparty/ptm/ptm_initialize_data.cpp: In function ‘int initialize_graphs(const ptm::refdata_t*, int8_t*)’: 2023-11-25T06:22:27,295 thirdparty/ptm/ptm_initialize_data.cpp:34:21: warning: unused variable ‘_max_degree’ [-Wunused-variable] 2023-11-25T06:22:27,295 34 | int _max_degree = ptm::graph_degree(s->num_facets, s->graphs[i].facets, s->num_nbrs, degree); 2023-11-25T06:22:27,296 | ^~~~~~~~~~~ 2023-11-25T06:22:27,604 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_normalize_vertices.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:27,947 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_polar.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:28,703 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_quat.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:29,665 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_structure_matcher.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:30,290 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ithirdparty/ptm -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c thirdparty/ptm/ptm_voronoi_cell.cpp -o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -std=c++17 -std=c++17 -fvisibility=hidden -g0 -fvisibility=hidden -g0 -fopenmp 2023-11-25T06:22:32,453 mdapy/ptm/_ptm.cpp: In function ‘void get_ptm(char*, double_py, int_py, pybind11::array_t, pybind11::array_t, pybind11::array_t, double, pybind11::array)’: 2023-11-25T06:22:32,453 mdapy/ptm/_ptm.cpp:102:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable] 2023-11-25T06:22:32,454 102 | bool found = false; 2023-11-25T06:22:32,455 | ^~~~~ 2023-11-25T06:22:35,223 In file included from /usr/include/c++/12/vector:70, 2023-11-25T06:22:35,224 from thirdparty/ptm/ptm_voronoi_cell.h:59, 2023-11-25T06:22:35,225 from thirdparty/ptm/ptm_voronoi_cell.cpp:59: 2023-11-25T06:22:35,225 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2023-11-25T06:22:35,226 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2023-11-25T06:22:35,227 439 | vector<_Tp, _Alloc>:: 2023-11-25T06:22:35,227 | ^~~~~~~~~~~~~~~~~~~ 2023-11-25T06:22:35,296 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2023-11-25T06:22:35,297 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2023-11-25T06:22:35,298 inlined from ‘void ptm_voro::voronoicell_base::face_areas(std::vector&)’ at thirdparty/ptm/ptm_voronoi_cell.cpp:1251:36: 2023-11-25T06:22:35,298 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2023-11-25T06:22:35,299 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2023-11-25T06:22:35,300 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-11-25T06:22:46,978 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/ptm/_ptm.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_alloy_types.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_canonical_coloured.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_constants.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_convex_hull_incremental.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_deformation_gradient.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_graph_tools.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_index.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_initialize_data.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_neighbour_ordering.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_normalize_vertices.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_polar.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_quat.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_structure_matcher.o build/temp.linux-armv7l-cpython-311/thirdparty/ptm/ptm_voronoi_cell.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_ptm.cpython-311-arm-linux-gnueabihf.so -fopenmp 2023-11-25T06:22:47,275 building '_rdf' extension 2023-11-25T06:22:47,275 creating build/temp.linux-armv7l-cpython-311/mdapy/rdf 2023-11-25T06:22:47,279 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/rdf/_rdf.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/rdf/_rdf.o -std=c++17 -fvisibility=hidden -g0 2023-11-25T06:23:05,843 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/rdf/_rdf.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_rdf.cpython-311-arm-linux-gnueabihf.so 2023-11-25T06:23:06,090 building '_neigh' extension 2023-11-25T06:23:06,090 creating build/temp.linux-armv7l-cpython-311/mdapy/neigh 2023-11-25T06:23:06,094 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-pl3fo3wz/overlay/local/lib/python3.11/dist-packages/pybind11/include -I/usr/include/python3.11 -c mdapy/neigh/_neigh.cpp -o build/temp.linux-armv7l-cpython-311/mdapy/neigh/_neigh.o -std=c++17 -fvisibility=hidden -g0 2023-11-25T06:23:25,458 arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/mdapy/neigh/_neigh.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/_neigh.cpython-311-arm-linux-gnueabihf.so 2023-11-25T06:23:25,718 installing to build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,719 running install 2023-11-25T06:23:25,742 running install_lib 2023-11-25T06:23:25,749 creating build/bdist.linux-armv7l 2023-11-25T06:23:25,750 creating build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,752 creating build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,753 copying build/lib.linux-armv7l-cpython-311/mdapy/nearest_neighbor.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,756 copying build/lib.linux-armv7l-cpython-311/mdapy/eam_generate.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,759 copying build/lib.linux-armv7l-cpython-311/mdapy/cluser_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,761 copying build/lib.linux-armv7l-cpython-311/mdapy/centro_symmetry_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,763 copying build/lib.linux-armv7l-cpython-311/mdapy/temperature.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,766 copying build/lib.linux-armv7l-cpython-311/mdapy/system.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,770 copying build/lib.linux-armv7l-cpython-311/mdapy/spatial_binning.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,772 copying build/lib.linux-armv7l-cpython-311/mdapy/polyhedral_template_matching.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,775 copying build/lib.linux-armv7l-cpython-311/mdapy/visualize.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,777 copying build/lib.linux-armv7l-cpython-311/mdapy/void_distribution.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,779 copying build/lib.linux-armv7l-cpython-311/mdapy/entropy.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,782 copying build/lib.linux-armv7l-cpython-311/mdapy/lindemann_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,784 copying build/lib.linux-armv7l-cpython-311/mdapy/tool_function.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,786 copying build/lib.linux-armv7l-cpython-311/mdapy/pigz.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,789 copying build/lib.linux-armv7l-cpython-311/mdapy/calculator.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,791 copying build/lib.linux-armv7l-cpython-311/mdapy/voronoi_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,794 copying build/lib.linux-armv7l-cpython-311/mdapy/replicate.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,796 copying build/lib.linux-armv7l-cpython-311/mdapy/neighbor.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,798 copying build/lib.linux-armv7l-cpython-311/mdapy/potential.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,800 copying build/lib.linux-armv7l-cpython-311/mdapy/load_save_data.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,803 copying build/lib.linux-armv7l-cpython-311/mdapy/common_neighbor_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,806 copying build/lib.linux-armv7l-cpython-311/mdapy/plotset.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,808 copying build/lib.linux-armv7l-cpython-311/mdapy/__init__.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,810 copying build/lib.linux-armv7l-cpython-311/mdapy/eam_average.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,812 copying build/lib.linux-armv7l-cpython-311/mdapy/lattice_maker.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,815 copying build/lib.linux-armv7l-cpython-311/mdapy/pair_distribution.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,817 copying build/lib.linux-armv7l-cpython-311/mdapy/create_polycrystalline.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,820 copying build/lib.linux-armv7l-cpython-311/mdapy/identify_SFs_TBs.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,823 copying build/lib.linux-armv7l-cpython-311/mdapy/warren_cowley_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,825 copying build/lib.linux-armv7l-cpython-311/mdapy/mean_squared_displacement.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,827 copying build/lib.linux-armv7l-cpython-311/mdapy/common_neighbor_parameter.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,830 copying build/lib.linux-armv7l-cpython-311/mdapy/steinhardt_bond_orientation.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,833 copying build/lib.linux-armv7l-cpython-311/mdapy/ackland_jones_analysis.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,835 copying build/lib.linux-armv7l-cpython-311/mdapy/timer.py -> build/bdist.linux-armv7l/wheel/mdapy 2023-11-25T06:23:25,837 copying build/lib.linux-armv7l-cpython-311/_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,856 copying build/lib.linux-armv7l-cpython-311/_cluster_analysis.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,863 copying build/lib.linux-armv7l-cpython-311/_ptm.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,870 copying build/lib.linux-armv7l-cpython-311/_neigh.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,874 copying build/lib.linux-armv7l-cpython-311/_rdf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2023-11-25T06:23:25,879 running install_egg_info 2023-11-25T06:23:25,890 running egg_info 2023-11-25T06:23:25,894 writing mdapy.egg-info/PKG-INFO 2023-11-25T06:23:25,899 writing dependency_links to mdapy.egg-info/dependency_links.txt 2023-11-25T06:23:25,902 writing requirements to mdapy.egg-info/requires.txt 2023-11-25T06:23:25,903 writing top-level names to mdapy.egg-info/top_level.txt 2023-11-25T06:23:25,921 reading manifest file 'mdapy.egg-info/SOURCES.txt' 2023-11-25T06:23:25,944 adding license file 'LICENSE' 2023-11-25T06:23:25,951 writing manifest file 'mdapy.egg-info/SOURCES.txt' 2023-11-25T06:23:25,953 Copying mdapy.egg-info to build/bdist.linux-armv7l/wheel/mdapy-0.9.9-py3.11.egg-info 2023-11-25T06:23:25,965 running install_scripts 2023-11-25T06:23:26,013 creating build/bdist.linux-armv7l/wheel/mdapy-0.9.9.dist-info/WHEEL 2023-11-25T06:23:26,016 creating '/tmp/pip-wheel-h7bh5gs3/.tmp-ijs510hb/mdapy-0.9.9-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T06:23:26,043 adding '_cluster_analysis.cpython-311-arm-linux-gnueabihf.so' 2023-11-25T06:23:26,071 adding '_neigh.cpython-311-arm-linux-gnueabihf.so' 2023-11-25T06:23:26,119 adding '_ptm.cpython-311-arm-linux-gnueabihf.so' 2023-11-25T06:23:26,147 adding '_rdf.cpython-311-arm-linux-gnueabihf.so' 2023-11-25T06:23:26,252 adding '_voronoi_analysis.cpython-311-arm-linux-gnueabihf.so' 2023-11-25T06:23:26,258 adding 'mdapy/__init__.py' 2023-11-25T06:23:26,260 adding 'mdapy/ackland_jones_analysis.py' 2023-11-25T06:23:26,262 adding 'mdapy/calculator.py' 2023-11-25T06:23:26,264 adding 'mdapy/centro_symmetry_parameter.py' 2023-11-25T06:23:26,266 adding 'mdapy/cluser_analysis.py' 2023-11-25T06:23:26,268 adding 'mdapy/common_neighbor_analysis.py' 2023-11-25T06:23:26,270 adding 'mdapy/common_neighbor_parameter.py' 2023-11-25T06:23:26,273 adding 'mdapy/create_polycrystalline.py' 2023-11-25T06:23:26,275 adding 'mdapy/eam_average.py' 2023-11-25T06:23:26,277 adding 'mdapy/eam_generate.py' 2023-11-25T06:23:26,279 adding 'mdapy/entropy.py' 2023-11-25T06:23:26,281 adding 'mdapy/identify_SFs_TBs.py' 2023-11-25T06:23:26,283 adding 'mdapy/lattice_maker.py' 2023-11-25T06:23:26,285 adding 'mdapy/lindemann_parameter.py' 2023-11-25T06:23:26,288 adding 'mdapy/load_save_data.py' 2023-11-25T06:23:26,290 adding 'mdapy/mean_squared_displacement.py' 2023-11-25T06:23:26,292 adding 'mdapy/nearest_neighbor.py' 2023-11-25T06:23:26,294 adding 'mdapy/neighbor.py' 2023-11-25T06:23:26,296 adding 'mdapy/pair_distribution.py' 2023-11-25T06:23:26,299 adding 'mdapy/pigz.py' 2023-11-25T06:23:26,300 adding 'mdapy/plotset.py' 2023-11-25T06:23:26,302 adding 'mdapy/polyhedral_template_matching.py' 2023-11-25T06:23:26,304 adding 'mdapy/potential.py' 2023-11-25T06:23:26,306 adding 'mdapy/replicate.py' 2023-11-25T06:23:26,308 adding 'mdapy/spatial_binning.py' 2023-11-25T06:23:26,311 adding 'mdapy/steinhardt_bond_orientation.py' 2023-11-25T06:23:26,320 adding 'mdapy/system.py' 2023-11-25T06:23:26,322 adding 'mdapy/temperature.py' 2023-11-25T06:23:26,324 adding 'mdapy/timer.py' 2023-11-25T06:23:26,326 adding 'mdapy/tool_function.py' 2023-11-25T06:23:26,328 adding 'mdapy/visualize.py' 2023-11-25T06:23:26,330 adding 'mdapy/void_distribution.py' 2023-11-25T06:23:26,331 adding 'mdapy/voronoi_analysis.py' 2023-11-25T06:23:26,333 adding 'mdapy/warren_cowley_parameter.py' 2023-11-25T06:23:26,336 adding 'mdapy-0.9.9.dist-info/LICENSE' 2023-11-25T06:23:26,337 adding 'mdapy-0.9.9.dist-info/METADATA' 2023-11-25T06:23:26,338 adding 'mdapy-0.9.9.dist-info/WHEEL' 2023-11-25T06:23:26,339 adding 'mdapy-0.9.9.dist-info/top_level.txt' 2023-11-25T06:23:26,340 adding 'mdapy-0.9.9.dist-info/RECORD' 2023-11-25T06:23:26,349 removing build/bdist.linux-armv7l/wheel 2023-11-25T06:23:26,456 Building wheel for mdapy (pyproject.toml): finished with status 'done' 2023-11-25T06:23:26,482 Created wheel for mdapy: filename=mdapy-0.9.9-cp311-cp311-linux_armv7l.whl size=640943 sha256=f2d28d25df2fa09471e8e71f76244429f91d8a92e1e5d7776bd3c494cd281614 2023-11-25T06:23:26,483 Stored in directory: /tmp/pip-ephem-wheel-cache-iedrd_8p/wheels/69/8e/e1/40e38c11455a10ce58b8f77a3d8fed8417638ee3fec61cb975 2023-11-25T06:23:26,496 Successfully built mdapy 2023-11-25T06:23:26,515 Removed build tracker: '/tmp/pip-build-tracker-vix_c44t'