2023-11-25T09:37:29,434 Created temporary directory: /tmp/pip-build-tracker-jr87iaeu
2023-11-25T09:37:29,435 Initialized build tracking at /tmp/pip-build-tracker-jr87iaeu
2023-11-25T09:37:29,435 Created build tracker: /tmp/pip-build-tracker-jr87iaeu
2023-11-25T09:37:29,436 Entered build tracker: /tmp/pip-build-tracker-jr87iaeu
2023-11-25T09:37:29,437 Created temporary directory: /tmp/pip-wheel-dodwk2j4
2023-11-25T09:37:29,440 Created temporary directory: /tmp/pip-ephem-wheel-cache-fkhyozci
2023-11-25T09:37:29,461 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-25T09:37:29,465 2 location(s) to search for versions of nmdc-runtime:
2023-11-25T09:37:29,465 * https://pypi.org/simple/nmdc-runtime/
2023-11-25T09:37:29,465 * https://www.piwheels.org/simple/nmdc-runtime/
2023-11-25T09:37:29,466 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/
2023-11-25T09:37:29,466 Getting page https://pypi.org/simple/nmdc-runtime/
2023-11-25T09:37:29,468 Found index url https://pypi.org/simple/
2023-11-25T09:37:29,680 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json
2023-11-25T09:37:29,686   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,687   Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0
2023-11-25T09:37:29,687   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,688   Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1
2023-11-25T09:37:29,689   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,690   Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3
2023-11-25T09:37:29,691   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,691   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,692   Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6
2023-11-25T09:37:29,693   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,694   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,695   Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4
2023-11-25T09:37:29,696   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,697   Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5
2023-11-25T09:37:29,697   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,699   Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6
2023-11-25T09:37:29,699   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,700   Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7
2023-11-25T09:37:29,701   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,703   Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8
2023-11-25T09:37:29,704   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,705   Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9
2023-11-25T09:37:29,706   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,707   Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10
2023-11-25T09:37:29,708   Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,709   Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11
2023-11-25T09:37:29,709 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/
2023-11-25T09:37:29,710 Getting page https://www.piwheels.org/simple/nmdc-runtime/
2023-11-25T09:37:29,712 Found index url https://www.piwheels.org/simple/
2023-11-25T09:37:29,864 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html
2023-11-25T09:37:29,868   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,868   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,869   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,869   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,870   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,870   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,871   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10)
2023-11-25T09:37:29,871   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,872   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,873   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,873   Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8)
2023-11-25T09:37:29,874 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/
2023-11-25T09:37:29,874 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/
2023-11-25T09:37:29,894 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates
2023-11-25T09:37:29,912 Collecting nmdc-runtime==1.0.11
2023-11-25T09:37:29,915   Created temporary directory: /tmp/pip-unpack-2uzbm7ja
2023-11-25T09:37:30,152   Downloading nmdc_runtime-1.0.11.tar.gz (63.7 MB)
2023-11-25T09:37:45,335   Added nmdc-runtime==1.0.11 from https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz to build tracker '/tmp/pip-build-tracker-jr87iaeu'
2023-11-25T09:37:45,337   Running setup.py (path:/tmp/pip-wheel-dodwk2j4/nmdc-runtime_79b43b87b2d24024830028c3512a83a9/setup.py) egg_info for package nmdc-runtime
2023-11-25T09:37:45,338   Created temporary directory: /tmp/pip-pip-egg-info-_02tzh78
2023-11-25T09:37:45,339   Preparing metadata (setup.py): started
2023-11-25T09:37:45,340   Running command python setup.py egg_info
2023-11-25T09:37:46,052   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-11-25T09:37:46,052   !!

2023-11-25T09:37:46,053           ********************************************************************************
2023-11-25T09:37:46,054           Requirements should be satisfied by a PEP 517 installer.
2023-11-25T09:37:46,054           If you are using pip, you can try `pip install --use-pep517`.
2023-11-25T09:37:46,054           ********************************************************************************

2023-11-25T09:37:46,055   !!
2023-11-25T09:37:46,056     dist.fetch_build_eggs(dist.setup_requires)
2023-11-25T09:37:49,042   WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
2023-11-25T09:37:49,141   running egg_info
2023-11-25T09:37:49,143   creating /tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info
2023-11-25T09:37:49,169   writing /tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/PKG-INFO
2023-11-25T09:37:49,172   writing dependency_links to /tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/dependency_links.txt
2023-11-25T09:37:49,174   writing entry points to /tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/entry_points.txt
2023-11-25T09:37:49,175   writing top-level names to /tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/top_level.txt
2023-11-25T09:37:49,177   writing manifest file '/tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/SOURCES.txt'
2023-11-25T09:37:49,360   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-11-25T09:37:49,366   reading manifest file '/tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/SOURCES.txt'
2023-11-25T09:37:49,367   adding license file 'LICENSE'
2023-11-25T09:37:49,371   writing manifest file '/tmp/pip-pip-egg-info-_02tzh78/nmdc_runtime.egg-info/SOURCES.txt'
2023-11-25T09:37:49,484   Preparing metadata (setup.py): finished with status 'done'
2023-11-25T09:37:49,488   Source in /tmp/pip-wheel-dodwk2j4/nmdc-runtime_79b43b87b2d24024830028c3512a83a9 has version 1.0.11, which satisfies requirement nmdc-runtime==1.0.11 from https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz
2023-11-25T09:37:49,489   Removed nmdc-runtime==1.0.11 from https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz from build tracker '/tmp/pip-build-tracker-jr87iaeu'
2023-11-25T09:37:49,495 Created temporary directory: /tmp/pip-unpack-m01n7x3d
2023-11-25T09:37:49,496 Created temporary directory: /tmp/pip-unpack-zpkxzbjq
2023-11-25T09:37:49,499 Building wheels for collected packages: nmdc-runtime
2023-11-25T09:37:49,503   Created temporary directory: /tmp/pip-wheel-n7nkf4re
2023-11-25T09:37:49,504   Building wheel for nmdc-runtime (setup.py): started
2023-11-25T09:37:49,505   Destination directory: /tmp/pip-wheel-n7nkf4re
2023-11-25T09:37:49,506   Running command python setup.py bdist_wheel
2023-11-25T09:37:50,190   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-11-25T09:37:50,190   !!

2023-11-25T09:37:50,191           ********************************************************************************
2023-11-25T09:37:50,191           Requirements should be satisfied by a PEP 517 installer.
2023-11-25T09:37:50,192           If you are using pip, you can try `pip install --use-pep517`.
2023-11-25T09:37:50,192           ********************************************************************************

2023-11-25T09:37:50,193   !!
2023-11-25T09:37:50,194     dist.fetch_build_eggs(dist.setup_requires)
2023-11-25T09:37:50,714   WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
2023-11-25T09:37:50,805   running bdist_wheel
2023-11-25T09:37:50,909   running build
2023-11-25T09:37:50,910   running build_py
2023-11-25T09:37:50,939   creating build
2023-11-25T09:37:50,940   creating build/lib
2023-11-25T09:37:50,941   creating build/lib/nmdc_runtime
2023-11-25T09:37:50,942   copying nmdc_runtime/main.py -> build/lib/nmdc_runtime
2023-11-25T09:37:50,943   copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime
2023-11-25T09:37:50,945   copying nmdc_runtime/util.py -> build/lib/nmdc_runtime
2023-11-25T09:37:50,947   copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime
2023-11-25T09:37:50,949   creating build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,950   copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,952   copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,953   copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,956   copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,959   copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,960   copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib
2023-11-25T09:37:50,963   creating build/lib/nmdc_runtime/infrastructure
2023-11-25T09:37:50,964   copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure
2023-11-25T09:37:50,966   creating build/lib/nmdc_runtime/domain
2023-11-25T09:37:50,967   copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain
2023-11-25T09:37:50,969   creating build/lib/nmdc_runtime/client
2023-11-25T09:37:50,970   copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client
2023-11-25T09:37:50,972   creating build/lib/nmdc_runtime/minter
2023-11-25T09:37:50,972   copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter
2023-11-25T09:37:50,974   copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter
2023-11-25T09:37:50,976   copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter
2023-11-25T09:37:50,978   creating build/lib/nmdc_runtime/site
2023-11-25T09:37:50,978   copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,981   copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,983   copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,984   copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,987   copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,989   copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site
2023-11-25T09:37:50,992   creating build/lib/nmdc_runtime/core
2023-11-25T09:37:50,993   copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core
2023-11-25T09:37:50,994   creating build/lib/nmdc_runtime/infrastructure/database
2023-11-25T09:37:50,995   copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database
2023-11-25T09:37:50,997   copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database
2023-11-25T09:37:50,999   creating build/lib/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,000   copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,001   copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,003   creating build/lib/nmdc_runtime/domain/users
2023-11-25T09:37:51,004   copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users
2023-11-25T09:37:51,005   copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users
2023-11-25T09:37:51,007   copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users
2023-11-25T09:37:51,008   copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users
2023-11-25T09:37:51,010   creating build/lib/nmdc_runtime/minter/domain
2023-11-25T09:37:51,011   copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain
2023-11-25T09:37:51,012   copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain
2023-11-25T09:37:51,014   creating build/lib/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,015   copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,016   copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,019   creating build/lib/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,019   copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,022   copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,024   creating build/lib/nmdc_runtime/site/backup
2023-11-25T09:37:51,024   copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup
2023-11-25T09:37:51,027   copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup
2023-11-25T09:37:51,028   copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup
2023-11-25T09:37:51,030   copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup
2023-11-25T09:37:51,032   creating build/lib/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,033   copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,035   copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,037   creating build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,038   copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,039   copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,041   copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,042   copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,044   copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation
2023-11-25T09:37:51,046   creating build/lib/nmdc_runtime/site/normalization
2023-11-25T09:37:51,047   copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization
2023-11-25T09:37:51,049   copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization
2023-11-25T09:37:51,051   creating build/lib/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,052   copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,053   copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,055   copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,057   creating build/lib/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,058   copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,059   copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,061   copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,064   copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,066   creating build/lib/nmdc_runtime/site/export
2023-11-25T09:37:51,067   copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export
2023-11-25T09:37:51,068   copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export
2023-11-25T09:37:51,070   creating build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,071   copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,074   copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,076   copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,077   copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,079   copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,081   copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,083   copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,086   copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,087   copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation
2023-11-25T09:37:51,089   creating build/lib/nmdc_runtime/core/db
2023-11-25T09:37:51,090   copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db
2023-11-25T09:37:51,092   copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db
2023-11-25T09:37:51,094   creating build/lib/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,094   copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,096   copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,098   copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,144   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-11-25T09:37:51,144   !!

2023-11-25T09:37:51,145           ********************************************************************************
2023-11-25T09:37:51,146           Please avoid running ``setup.py`` directly.
2023-11-25T09:37:51,147           Instead, use pypa/build, pypa/installer or other
2023-11-25T09:37:51,147           standards-based tools.

2023-11-25T09:37:51,148           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-11-25T09:37:51,149           ********************************************************************************

2023-11-25T09:37:51,150   !!
2023-11-25T09:37:51,150     self.initialize_options()
2023-11-25T09:37:51,171   installing to build/bdist.linux-armv7l/wheel
2023-11-25T09:37:51,172   running install
2023-11-25T09:37:51,196   running install_lib
2023-11-25T09:37:51,223   creating build/bdist.linux-armv7l
2023-11-25T09:37:51,223   creating build/bdist.linux-armv7l/wheel
2023-11-25T09:37:51,225   creating build/bdist.linux-armv7l/wheel/nmdc_runtime
2023-11-25T09:37:51,226   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,228   copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,229   copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,231   copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,234   copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,236   copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,238   copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib
2023-11-25T09:37:51,241   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure
2023-11-25T09:37:51,242   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2023-11-25T09:37:51,243   copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2023-11-25T09:37:51,244   copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database
2023-11-25T09:37:51,246   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,247   copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,249   copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models
2023-11-25T09:37:51,250   copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure
2023-11-25T09:37:51,252   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain
2023-11-25T09:37:51,253   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2023-11-25T09:37:51,254   copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2023-11-25T09:37:51,256   copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2023-11-25T09:37:51,258   copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2023-11-25T09:37:51,260   copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users
2023-11-25T09:37:51,261   copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain
2023-11-25T09:37:51,263   copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2023-11-25T09:37:51,264   copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2023-11-25T09:37:51,266   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client
2023-11-25T09:37:51,267   copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client
2023-11-25T09:37:51,269   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter
2023-11-25T09:37:51,270   copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter
2023-11-25T09:37:51,272   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain
2023-11-25T09:37:51,273   copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain
2023-11-25T09:37:51,275   copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain
2023-11-25T09:37:51,277   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,278   copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,280   copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints
2023-11-25T09:37:51,281   copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter
2023-11-25T09:37:51,283   copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter
2023-11-25T09:37:51,285   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,286   copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,288   copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters
2023-11-25T09:37:51,289   copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2023-11-25T09:37:51,292   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,293   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2023-11-25T09:37:51,294   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2023-11-25T09:37:51,296   copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2023-11-25T09:37:51,297   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2023-11-25T09:37:51,299   copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup
2023-11-25T09:37:51,301   copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,303   copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,306   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,306   copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,308   copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets
2023-11-25T09:37:51,310   copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,312   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,312   copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,314   copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,316   copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,317   copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,319   copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation
2023-11-25T09:37:51,321   copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,324   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization
2023-11-25T09:37:51,325   copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization
2023-11-25T09:37:51,327   copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization
2023-11-25T09:37:51,328   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,329   copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,331   copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,333   copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects
2023-11-25T09:37:51,335   copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,336   copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site
2023-11-25T09:37:51,339   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,340   copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,341   copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,343   copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,346   copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb
2023-11-25T09:37:51,348   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2023-11-25T09:37:51,349   copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2023-11-25T09:37:51,350   copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export
2023-11-25T09:37:51,352   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,353   copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,356   copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,358   copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,359   copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,361   copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,364   copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,366   copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,369   copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,370   copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation
2023-11-25T09:37:51,372   copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime
2023-11-25T09:37:51,374   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core
2023-11-25T09:37:51,375   copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core
2023-11-25T09:37:51,377   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2023-11-25T09:37:51,378   copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2023-11-25T09:37:51,379   copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db
2023-11-25T09:37:51,381   creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,383   copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,384   copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,386   copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions
2023-11-25T09:37:51,388   running install_egg_info
2023-11-25T09:37:51,441   running egg_info
2023-11-25T09:37:51,467   writing nmdc_runtime.egg-info/PKG-INFO
2023-11-25T09:37:51,470   writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt
2023-11-25T09:37:51,471   writing entry points to nmdc_runtime.egg-info/entry_points.txt
2023-11-25T09:37:51,473   writing top-level names to nmdc_runtime.egg-info/top_level.txt
2023-11-25T09:37:51,579   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-11-25T09:37:51,582   reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2023-11-25T09:37:51,637   adding license file 'LICENSE'
2023-11-25T09:37:51,653   writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt'
2023-11-25T09:37:51,655   Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.11-py3.11.egg-info
2023-11-25T09:37:51,665   running install_scripts
2023-11-25T09:37:51,678   creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.11.dist-info/WHEEL
2023-11-25T09:37:51,680   creating '/tmp/pip-wheel-n7nkf4re/nmdc_runtime-1.0.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-11-25T09:37:51,683   adding 'nmdc_runtime/__init__.py'
2023-11-25T09:37:51,684   adding 'nmdc_runtime/containers.py'
2023-11-25T09:37:51,685   adding 'nmdc_runtime/main.py'
2023-11-25T09:37:51,688   adding 'nmdc_runtime/util.py'
2023-11-25T09:37:51,690   adding 'nmdc_runtime/client/__init__.py'
2023-11-25T09:37:51,691   adding 'nmdc_runtime/core/__init__.py'
2023-11-25T09:37:51,693   adding 'nmdc_runtime/core/db/Database.py'
2023-11-25T09:37:51,694   adding 'nmdc_runtime/core/db/__init__.py'
2023-11-25T09:37:51,696   adding 'nmdc_runtime/core/exceptions/__init__.py'
2023-11-25T09:37:51,697   adding 'nmdc_runtime/core/exceptions/base.py'
2023-11-25T09:37:51,698   adding 'nmdc_runtime/core/exceptions/token.py'
2023-11-25T09:37:51,700   adding 'nmdc_runtime/domain/__init__.py'
2023-11-25T09:37:51,701   adding 'nmdc_runtime/domain/users/__init__.py'
2023-11-25T09:37:51,702   adding 'nmdc_runtime/domain/users/queriesInterface.py'
2023-11-25T09:37:51,704   adding 'nmdc_runtime/domain/users/userSchema.py'
2023-11-25T09:37:51,705   adding 'nmdc_runtime/domain/users/userService.py'
2023-11-25T09:37:51,706   adding 'nmdc_runtime/infrastructure/__init__.py'
2023-11-25T09:37:51,708   adding 'nmdc_runtime/infrastructure/database/__init__.py'
2023-11-25T09:37:51,709   adding 'nmdc_runtime/infrastructure/database/db.py'
2023-11-25T09:37:51,710   adding 'nmdc_runtime/infrastructure/database/models/__init__.py'
2023-11-25T09:37:51,711   adding 'nmdc_runtime/infrastructure/database/models/user.py'
2023-11-25T09:37:51,713   adding 'nmdc_runtime/lib/__init__.py'
2023-11-25T09:37:51,714   adding 'nmdc_runtime/lib/extract_nmdc_data.py'
2023-11-25T09:37:51,716   adding 'nmdc_runtime/lib/load_nmdc_data.py'
2023-11-25T09:37:51,719   adding 'nmdc_runtime/lib/nmdc_dataframes.py'
2023-11-25T09:37:51,721   adding 'nmdc_runtime/lib/nmdc_etl_class.py'
2023-11-25T09:37:51,726   adding 'nmdc_runtime/lib/transform_nmdc_data.py'
2023-11-25T09:37:51,728   adding 'nmdc_runtime/minter/__init__.py'
2023-11-25T09:37:51,729   adding 'nmdc_runtime/minter/bootstrap.py'
2023-11-25T09:37:51,731   adding 'nmdc_runtime/minter/config.py'
2023-11-25T09:37:51,732   adding 'nmdc_runtime/minter/adapters/__init__.py'
2023-11-25T09:37:51,734   adding 'nmdc_runtime/minter/adapters/repository.py'
2023-11-25T09:37:51,735   adding 'nmdc_runtime/minter/domain/__init__.py'
2023-11-25T09:37:51,737   adding 'nmdc_runtime/minter/domain/model.py'
2023-11-25T09:37:51,738   adding 'nmdc_runtime/minter/entrypoints/__init__.py'
2023-11-25T09:37:51,740   adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py'
2023-11-25T09:37:51,741   adding 'nmdc_runtime/site/__init__.py'
2023-11-25T09:37:51,743   adding 'nmdc_runtime/site/graphs.py'
2023-11-25T09:37:51,746   adding 'nmdc_runtime/site/ops.py'
2023-11-25T09:37:51,749   adding 'nmdc_runtime/site/repository.py'
2023-11-25T09:37:51,751   adding 'nmdc_runtime/site/resources.py'
2023-11-25T09:37:51,753   adding 'nmdc_runtime/site/util.py'
2023-11-25T09:37:51,754   adding 'nmdc_runtime/site/backup/__init__.py'
2023-11-25T09:37:51,756   adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py'
2023-11-25T09:37:51,757   adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py'
2023-11-25T09:37:51,758   adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py'
2023-11-25T09:37:51,760   adding 'nmdc_runtime/site/changesheets/__init__.py'
2023-11-25T09:37:51,761   adding 'nmdc_runtime/site/changesheets/base.py'
2023-11-25T09:37:51,763   adding 'nmdc_runtime/site/drsobjects/__init__.py'
2023-11-25T09:37:51,764   adding 'nmdc_runtime/site/drsobjects/ingest.py'
2023-11-25T09:37:51,765   adding 'nmdc_runtime/site/drsobjects/registration.py'
2023-11-25T09:37:51,767   adding 'nmdc_runtime/site/export/__init__.py'
2023-11-25T09:37:51,768   adding 'nmdc_runtime/site/export/study_metadata.py'
2023-11-25T09:37:51,769   adding 'nmdc_runtime/site/normalization/__init__.py'
2023-11-25T09:37:51,770   adding 'nmdc_runtime/site/normalization/gold.py'
2023-11-25T09:37:51,772   adding 'nmdc_runtime/site/terminusdb/__init__.py'
2023-11-25T09:37:51,773   adding 'nmdc_runtime/site/terminusdb/generate.py'
2023-11-25T09:37:51,775   adding 'nmdc_runtime/site/terminusdb/ingest.py'
2023-11-25T09:37:51,782   adding 'nmdc_runtime/site/terminusdb/schema.py'
2023-11-25T09:37:51,784   adding 'nmdc_runtime/site/translation/__init__.py'
2023-11-25T09:37:51,785   adding 'nmdc_runtime/site/translation/emsl.py'
2023-11-25T09:37:51,787   adding 'nmdc_runtime/site/translation/gold.py'
2023-11-25T09:37:51,790   adding 'nmdc_runtime/site/translation/gold_translator.py'
2023-11-25T09:37:51,791   adding 'nmdc_runtime/site/translation/jgi.py'
2023-11-25T09:37:51,795   adding 'nmdc_runtime/site/translation/neon_translator.py'
2023-11-25T09:37:51,798   adding 'nmdc_runtime/site/translation/submission_portal_translator.py'
2023-11-25T09:37:51,799   adding 'nmdc_runtime/site/translation/translator.py'
2023-11-25T09:37:51,801   adding 'nmdc_runtime/site/translation/util.py'
2023-11-25T09:37:51,803   adding 'nmdc_runtime/site/validation/__init__.py'
2023-11-25T09:37:51,804   adding 'nmdc_runtime/site/validation/emsl.py'
2023-11-25T09:37:51,805   adding 'nmdc_runtime/site/validation/gold.py'
2023-11-25T09:37:51,806   adding 'nmdc_runtime/site/validation/jgi.py'
2023-11-25T09:37:51,807   adding 'nmdc_runtime/site/validation/util.py'
2023-11-25T09:37:51,810   adding 'nmdc_runtime-1.0.11.dist-info/LICENSE'
2023-11-25T09:37:51,811   adding 'nmdc_runtime-1.0.11.dist-info/METADATA'
2023-11-25T09:37:51,812   adding 'nmdc_runtime-1.0.11.dist-info/WHEEL'
2023-11-25T09:37:51,813   adding 'nmdc_runtime-1.0.11.dist-info/entry_points.txt'
2023-11-25T09:37:51,814   adding 'nmdc_runtime-1.0.11.dist-info/top_level.txt'
2023-11-25T09:37:51,816   adding 'nmdc_runtime-1.0.11.dist-info/RECORD'
2023-11-25T09:37:51,819   removing build/bdist.linux-armv7l/wheel
2023-11-25T09:37:51,961   Building wheel for nmdc-runtime (setup.py): finished with status 'done'
2023-11-25T09:37:51,965   Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.11-py3-none-any.whl size=119842 sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd
2023-11-25T09:37:51,966   Stored in directory: /tmp/pip-ephem-wheel-cache-fkhyozci/wheels/e9/33/8e/3ad629c50dfcba32eeb05f78ae641de9f3f5ec187390b393bd
2023-11-25T09:37:51,979 Successfully built nmdc-runtime
2023-11-25T09:37:51,985 Removed build tracker: '/tmp/pip-build-tracker-jr87iaeu'