2023-11-25T15:06:57,136 Created temporary directory: /tmp/pip-build-tracker-vfxwcgha 2023-11-25T15:06:57,137 Initialized build tracking at /tmp/pip-build-tracker-vfxwcgha 2023-11-25T15:06:57,138 Created build tracker: /tmp/pip-build-tracker-vfxwcgha 2023-11-25T15:06:57,138 Entered build tracker: /tmp/pip-build-tracker-vfxwcgha 2023-11-25T15:06:57,139 Created temporary directory: /tmp/pip-wheel-l1b2s4g7 2023-11-25T15:06:57,142 Created temporary directory: /tmp/pip-ephem-wheel-cache-emssngmf 2023-11-25T15:06:57,164 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T15:06:57,167 2 location(s) to search for versions of atlas-densities: 2023-11-25T15:06:57,167 * https://pypi.org/simple/atlas-densities/ 2023-11-25T15:06:57,167 * https://www.piwheels.org/simple/atlas-densities/ 2023-11-25T15:06:57,168 Fetching project page and analyzing links: https://pypi.org/simple/atlas-densities/ 2023-11-25T15:06:57,169 Getting page https://pypi.org/simple/atlas-densities/ 2023-11-25T15:06:57,170 Found index url https://pypi.org/simple/ 2023-11-25T15:06:57,436 Fetched page https://pypi.org/simple/atlas-densities/ as application/vnd.pypi.simple.v1+json 2023-11-25T15:06:57,439 Found link https://files.pythonhosted.org/packages/75/a0/31e863dae4118b005ede7f6d9098a6910b9864be8a7912235629124fd1fe/atlas-densities-0.1.1.dev1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1.dev1 2023-11-25T15:06:57,440 Found link https://files.pythonhosted.org/packages/de/06/e8be8865b4bd500f567d873b884c95bc950e82d6b629daf4d2b51feee07f/atlas-densities-0.1.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.1 2023-11-25T15:06:57,441 Found link https://files.pythonhosted.org/packages/1c/7f/424e4e2a31de90b29ad4b08c106a94110c84fd3472800a26707cb6793cda/atlas-densities-0.1.2.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.2 2023-11-25T15:06:57,442 Found link https://files.pythonhosted.org/packages/d4/ff/487cd59cb1c04b581dfba1c835112a7d148c70f90af88e968e5013cfd229/atlas-densities-0.1.3.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.3 2023-11-25T15:06:57,443 Found link https://files.pythonhosted.org/packages/86/f5/7c7feea0c4c3d9bed1be86bed2d079ec3d076053276e24de09639bf6c4dd/atlas-densities-0.1.4.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.4 2023-11-25T15:06:57,444 Found link https://files.pythonhosted.org/packages/2c/ed/41e6c8f2ff9247f7c5b77a43c28727bf4c9a70bf1e7d9b6d2683e02be24e/atlas-densities-0.1.5.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.1.5 2023-11-25T15:06:57,445 Found link https://files.pythonhosted.org/packages/21/c8/9e8d339c85e1dc6c8aa7150f71176e1c86465678e142550fc02ff9298e9b/atlas-densities-0.2.0.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.0 2023-11-25T15:06:57,446 Found link https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz (from https://pypi.org/simple/atlas-densities/) (requires-python:>=3.7.0), version: 0.2.1 2023-11-25T15:06:57,447 Fetching project page and analyzing links: https://www.piwheels.org/simple/atlas-densities/ 2023-11-25T15:06:57,447 Getting page https://www.piwheels.org/simple/atlas-densities/ 2023-11-25T15:06:57,449 Found index url https://www.piwheels.org/simple/ 2023-11-25T15:06:57,608 Fetched page https://www.piwheels.org/simple/atlas-densities/ as text/html 2023-11-25T15:06:57,612 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.2.0-py3-none-any.whl#sha256=fb4c5d0d67c2e0fa95f43bf995117dc4d8958809fb8d795522e647de85a2e7e4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,612 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.5-py3-none-any.whl#sha256=5fef5da80583667be561af3afe70062d015ef24da71c3bef176043bea603c2c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,613 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.4-py3-none-any.whl#sha256=d4956925426510d1496ee873465e8178b2599c2fc5e1329503d8335ce50fd1c6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,614 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.3-py3-none-any.whl#sha256=e570061be8379bb89033a1cbbb97eb0754c41fe0214fa16447a01c7ec91a1a9f (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,614 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.2-py3-none-any.whl#sha256=8525ddeb5820cac5646a8e64609c379dfeda0ef3c1e0fddf611b904fe6717f9a (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,615 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1-py3-none-any.whl#sha256=0d8958b6a96c5a8bbb5f56954b074f97f56f62d4bf7d2feb02f324fdd9365ce4 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,615 Skipping link: No binaries permitted for atlas-densities: https://www.piwheels.org/simple/atlas-densities/atlas_densities-0.1.1.dev1-py3-none-any.whl#sha256=d5e13258a7e5662c891cc5061dc517d14138a9ea76e72ad43d422c688c5c73b6 (from https://www.piwheels.org/simple/atlas-densities/) (requires-python:>=3.7.0) 2023-11-25T15:06:57,616 Skipping link: not a file: https://www.piwheels.org/simple/atlas-densities/ 2023-11-25T15:06:57,616 Skipping link: not a file: https://pypi.org/simple/atlas-densities/ 2023-11-25T15:06:57,636 Given no hashes to check 1 links for project 'atlas-densities': discarding no candidates 2023-11-25T15:06:57,656 Collecting atlas-densities==0.2.1 2023-11-25T15:06:57,658 Created temporary directory: /tmp/pip-unpack-xt9qpc9y 2023-11-25T15:06:57,875 Downloading atlas-densities-0.2.1.tar.gz (1.3 MB) 2023-11-25T15:06:58,528 Added atlas-densities==0.2.1 from https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-vfxwcgha' 2023-11-25T15:06:58,530 Running setup.py (path:/tmp/pip-wheel-l1b2s4g7/atlas-densities_186a2032ed984bd084dd3b6233e91614/setup.py) egg_info for package atlas-densities 2023-11-25T15:06:58,531 Created temporary directory: /tmp/pip-pip-egg-info-oa1fh180 2023-11-25T15:06:58,532 Preparing metadata (setup.py): started 2023-11-25T15:06:58,533 Running command python setup.py egg_info 2023-11-25T15:06:59,261 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T15:06:59,261 !! 2023-11-25T15:06:59,262 ******************************************************************************** 2023-11-25T15:06:59,263 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T15:06:59,263 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T15:06:59,264 ******************************************************************************** 2023-11-25T15:06:59,265 !! 2023-11-25T15:06:59,266 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T15:07:02,351 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-25T15:07:02,460 running egg_info 2023-11-25T15:07:02,461 creating /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info 2023-11-25T15:07:02,489 writing /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/PKG-INFO 2023-11-25T15:07:02,494 writing dependency_links to /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/dependency_links.txt 2023-11-25T15:07:02,495 writing entry points to /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/entry_points.txt 2023-11-25T15:07:02,497 writing requirements to /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/requires.txt 2023-11-25T15:07:02,498 writing top-level names to /tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/top_level.txt 2023-11-25T15:07:02,500 writing manifest file '/tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/SOURCES.txt' 2023-11-25T15:07:02,678 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-25T15:07:02,684 reading manifest file '/tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/SOURCES.txt' 2023-11-25T15:07:02,686 reading manifest template 'MANIFEST.in' 2023-11-25T15:07:02,722 adding license file 'LICENSE.txt' 2023-11-25T15:07:02,722 adding license file 'AUTHORS.txt' 2023-11-25T15:07:02,727 writing manifest file '/tmp/pip-pip-egg-info-oa1fh180/atlas_densities.egg-info/SOURCES.txt' 2023-11-25T15:07:02,849 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T15:07:02,853 Source in /tmp/pip-wheel-l1b2s4g7/atlas-densities_186a2032ed984bd084dd3b6233e91614 has version 0.2.1, which satisfies requirement atlas-densities==0.2.1 from https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz 2023-11-25T15:07:02,854 Removed atlas-densities==0.2.1 from https://files.pythonhosted.org/packages/81/59/e8354e4210eca90f39bf76f7f85aa7bb627fe4fe13eaacd772f1069d7f9e/atlas-densities-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-vfxwcgha' 2023-11-25T15:07:02,862 Created temporary directory: /tmp/pip-unpack-1ms9ofie 2023-11-25T15:07:02,863 Created temporary directory: /tmp/pip-unpack-7v6gjf_9 2023-11-25T15:07:02,883 Building wheels for collected packages: atlas-densities 2023-11-25T15:07:02,887 Created temporary directory: /tmp/pip-wheel-66hr51kt 2023-11-25T15:07:02,888 Building wheel for atlas-densities (setup.py): started 2023-11-25T15:07:02,889 Destination directory: /tmp/pip-wheel-66hr51kt 2023-11-25T15:07:02,890 Running command python setup.py bdist_wheel 2023-11-25T15:07:03,588 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-25T15:07:03,588 !! 2023-11-25T15:07:03,589 ******************************************************************************** 2023-11-25T15:07:03,590 Requirements should be satisfied by a PEP 517 installer. 2023-11-25T15:07:03,590 If you are using pip, you can try `pip install --use-pep517`. 2023-11-25T15:07:03,591 ******************************************************************************** 2023-11-25T15:07:03,592 !! 2023-11-25T15:07:03,592 dist.fetch_build_eggs(dist.setup_requires) 2023-11-25T15:07:04,144 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-25T15:07:04,249 running bdist_wheel 2023-11-25T15:07:04,398 running build 2023-11-25T15:07:04,398 running build_py 2023-11-25T15:07:04,429 creating build 2023-11-25T15:07:04,429 creating build/lib 2023-11-25T15:07:04,430 creating build/lib/tests 2023-11-25T15:07:04,432 copying tests/mocking_tools.py -> build/lib/tests 2023-11-25T15:07:04,433 copying tests/test_utils.py -> build/lib/tests 2023-11-25T15:07:04,436 copying tests/__init__.py -> build/lib/tests 2023-11-25T15:07:04,437 creating build/lib/atlas_densities 2023-11-25T15:07:04,438 copying atlas_densities/utils.py -> build/lib/atlas_densities 2023-11-25T15:07:04,441 copying atlas_densities/version.py -> build/lib/atlas_densities 2023-11-25T15:07:04,442 copying atlas_densities/__init__.py -> build/lib/atlas_densities 2023-11-25T15:07:04,444 copying atlas_densities/exceptions.py -> build/lib/atlas_densities 2023-11-25T15:07:04,446 creating build/lib/tests/combination 2023-11-25T15:07:04,447 copying tests/combination/test_annotations_combinator.py -> build/lib/tests/combination 2023-11-25T15:07:04,450 copying tests/combination/__init__.py -> build/lib/tests/combination 2023-11-25T15:07:04,451 copying tests/combination/test_markers_combinator.py -> build/lib/tests/combination 2023-11-25T15:07:04,453 creating build/lib/tests/densities 2023-11-25T15:07:04,454 copying tests/densities/test_measurement_to_density.py -> build/lib/tests/densities 2023-11-25T15:07:04,457 copying tests/densities/test_optimization_initialization.py -> build/lib/tests/densities 2023-11-25T15:07:04,459 copying tests/densities/test_excitatory_inhibitory_splitting.py -> build/lib/tests/densities 2023-11-25T15:07:04,461 copying tests/densities/test_glia_densities.py -> build/lib/tests/densities 2023-11-25T15:07:04,463 copying tests/densities/test_mtype_densities_from_map.py -> build/lib/tests/densities 2023-11-25T15:07:04,465 copying tests/densities/test_mtype_densities_from_composition.py -> build/lib/tests/densities 2023-11-25T15:07:04,467 copying tests/densities/test_cell_counts.py -> build/lib/tests/densities 2023-11-25T15:07:04,469 copying tests/densities/test_mtype_densities_from_profiles.py -> build/lib/tests/densities 2023-11-25T15:07:04,471 copying tests/densities/test_fitting.py -> build/lib/tests/densities 2023-11-25T15:07:04,474 copying tests/densities/test_utils.py -> build/lib/tests/densities 2023-11-25T15:07:04,476 copying tests/densities/test_inhibitory_neuron_density_optimization.py -> build/lib/tests/densities 2023-11-25T15:07:04,478 copying tests/densities/test_inhibitory_neuron_densities_helper.py -> build/lib/tests/densities 2023-11-25T15:07:04,480 copying tests/densities/__init__.py -> build/lib/tests/densities 2023-11-25T15:07:04,481 copying tests/densities/test_refined_inhibitory_neuron_density.py -> build/lib/tests/densities 2023-11-25T15:07:04,484 copying tests/densities/test_inhibitory_neuron_density.py -> build/lib/tests/densities 2023-11-25T15:07:04,486 copying tests/densities/test_excel_reader.py -> build/lib/tests/densities 2023-11-25T15:07:04,488 copying tests/densities/test_cell_density.py -> build/lib/tests/densities 2023-11-25T15:07:04,491 creating build/lib/tests/app 2023-11-25T15:07:04,492 copying tests/app/test_cell_densities.py -> build/lib/tests/app 2023-11-25T15:07:04,495 copying tests/app/test_mtype_densities.py -> build/lib/tests/app 2023-11-25T15:07:04,497 copying tests/app/__init__.py -> build/lib/tests/app 2023-11-25T15:07:04,499 copying tests/app/test_refined_inhibitory_neuron_densities.py -> build/lib/tests/app 2023-11-25T15:07:04,501 copying tests/app/test_combination.py -> build/lib/tests/app 2023-11-25T15:07:04,503 creating build/lib/atlas_densities/combination 2023-11-25T15:07:04,504 copying atlas_densities/combination/annotations_combinator.py -> build/lib/atlas_densities/combination 2023-11-25T15:07:04,506 copying atlas_densities/combination/__init__.py -> build/lib/atlas_densities/combination 2023-11-25T15:07:04,508 copying atlas_densities/combination/markers_combinator.py -> build/lib/atlas_densities/combination 2023-11-25T15:07:04,511 creating build/lib/atlas_densities/densities 2023-11-25T15:07:04,512 copying atlas_densities/densities/cell_density.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,514 copying atlas_densities/densities/utils.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,516 copying atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,519 copying atlas_densities/densities/mtype_densities_from_composition.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,521 copying atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,523 copying atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,525 copying atlas_densities/densities/measurement_to_density.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,527 copying atlas_densities/densities/excel_reader.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,530 copying atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,532 copying atlas_densities/densities/fitting.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,535 copying atlas_densities/densities/glia_densities.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,537 copying atlas_densities/densities/cell_counts.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,539 copying atlas_densities/densities/mtype_densities_from_profiles.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,542 copying atlas_densities/densities/__init__.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,543 copying atlas_densities/densities/inhibitory_neuron_density.py -> build/lib/atlas_densities/densities 2023-11-25T15:07:04,546 creating build/lib/atlas_densities/app 2023-11-25T15:07:04,546 copying atlas_densities/app/utils.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,548 copying atlas_densities/app/cell_densities.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,551 copying atlas_densities/app/mtype_densities.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,553 copying atlas_densities/app/__init__.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,554 copying atlas_densities/app/cli.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,556 copying atlas_densities/app/combination.py -> build/lib/atlas_densities/app 2023-11-25T15:07:04,559 creating build/lib/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:04,559 copying atlas_densities/densities/mtype_densities_from_map/utils.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:04,561 copying atlas_densities/densities/mtype_densities_from_map/create.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:04,563 copying atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/lib/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:04,565 creating build/lib/atlas_densities/app/data 2023-11-25T15:07:04,566 copying atlas_densities/app/data/__init__.py -> build/lib/atlas_densities/app/data 2023-11-25T15:07:04,567 running egg_info 2023-11-25T15:07:04,596 writing atlas_densities.egg-info/PKG-INFO 2023-11-25T15:07:04,601 writing dependency_links to atlas_densities.egg-info/dependency_links.txt 2023-11-25T15:07:04,602 writing entry points to atlas_densities.egg-info/entry_points.txt 2023-11-25T15:07:04,604 writing requirements to atlas_densities.egg-info/requires.txt 2023-11-25T15:07:04,605 writing top-level names to atlas_densities.egg-info/top_level.txt 2023-11-25T15:07:04,703 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-25T15:07:04,706 reading manifest file 'atlas_densities.egg-info/SOURCES.txt' 2023-11-25T15:07:04,714 reading manifest template 'MANIFEST.in' 2023-11-25T15:07:04,740 adding license file 'LICENSE.txt' 2023-11-25T15:07:04,741 adding license file 'AUTHORS.txt' 2023-11-25T15:07:04,748 writing manifest file 'atlas_densities.egg-info/SOURCES.txt' 2023-11-25T15:07:04,751 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.markers' is absent from the `packages` configuration. 2023-11-25T15:07:04,752 !! 2023-11-25T15:07:04,753 ******************************************************************************** 2023-11-25T15:07:04,754 ############################ 2023-11-25T15:07:04,754 # Package would be ignored # 2023-11-25T15:07:04,755 ############################ 2023-11-25T15:07:04,756 Python recognizes 'atlas_densities.app.data.markers' as an importable package[^1], 2023-11-25T15:07:04,756 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,757 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,758 package, please make sure that 'atlas_densities.app.data.markers' is explicitly added 2023-11-25T15:07:04,758 to the `packages` configuration field. 2023-11-25T15:07:04,759 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,760 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,760 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,761 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,762 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,763 If you don't want 'atlas_densities.app.data.markers' to be distributed and are 2023-11-25T15:07:04,763 already explicitly excluding 'atlas_densities.app.data.markers' via 2023-11-25T15:07:04,764 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,764 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,765 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,765 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,768 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,768 even if it does not contain any `.py` files. 2023-11-25T15:07:04,769 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,770 directory, all directories are treated like packages. 2023-11-25T15:07:04,770 ******************************************************************************** 2023-11-25T15:07:04,778 !! 2023-11-25T15:07:04,779 check.warn(importable) 2023-11-25T15:07:04,780 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.measurements' is absent from the `packages` configuration. 2023-11-25T15:07:04,780 !! 2023-11-25T15:07:04,781 ******************************************************************************** 2023-11-25T15:07:04,782 ############################ 2023-11-25T15:07:04,782 # Package would be ignored # 2023-11-25T15:07:04,783 ############################ 2023-11-25T15:07:04,784 Python recognizes 'atlas_densities.app.data.measurements' as an importable package[^1], 2023-11-25T15:07:04,784 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,785 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,786 package, please make sure that 'atlas_densities.app.data.measurements' is explicitly added 2023-11-25T15:07:04,786 to the `packages` configuration field. 2023-11-25T15:07:04,787 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,788 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,789 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,792 If you don't want 'atlas_densities.app.data.measurements' to be distributed and are 2023-11-25T15:07:04,792 already explicitly excluding 'atlas_densities.app.data.measurements' via 2023-11-25T15:07:04,793 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,794 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,795 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,796 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,797 even if it does not contain any `.py` files. 2023-11-25T15:07:04,798 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,798 directory, all directories are treated like packages. 2023-11-25T15:07:04,799 ******************************************************************************** 2023-11-25T15:07:04,800 !! 2023-11-25T15:07:04,800 check.warn(importable) 2023-11-25T15:07:04,800 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.metadata' is absent from the `packages` configuration. 2023-11-25T15:07:04,801 !! 2023-11-25T15:07:04,802 ******************************************************************************** 2023-11-25T15:07:04,802 ############################ 2023-11-25T15:07:04,803 # Package would be ignored # 2023-11-25T15:07:04,803 ############################ 2023-11-25T15:07:04,804 Python recognizes 'atlas_densities.app.data.metadata' as an importable package[^1], 2023-11-25T15:07:04,804 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,805 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,806 package, please make sure that 'atlas_densities.app.data.metadata' is explicitly added 2023-11-25T15:07:04,806 to the `packages` configuration field. 2023-11-25T15:07:04,807 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,808 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,808 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,809 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,810 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,812 If you don't want 'atlas_densities.app.data.metadata' to be distributed and are 2023-11-25T15:07:04,813 already explicitly excluding 'atlas_densities.app.data.metadata' via 2023-11-25T15:07:04,813 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,814 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,815 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,817 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,818 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,821 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,821 even if it does not contain any `.py` files. 2023-11-25T15:07:04,822 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,823 directory, all directories are treated like packages. 2023-11-25T15:07:04,824 ******************************************************************************** 2023-11-25T15:07:04,825 !! 2023-11-25T15:07:04,826 check.warn(importable) 2023-11-25T15:07:04,826 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes' is absent from the `packages` configuration. 2023-11-25T15:07:04,827 !! 2023-11-25T15:07:04,828 ******************************************************************************** 2023-11-25T15:07:04,828 ############################ 2023-11-25T15:07:04,829 # Package would be ignored # 2023-11-25T15:07:04,829 ############################ 2023-11-25T15:07:04,830 Python recognizes 'atlas_densities.app.data.mtypes' as an importable package[^1], 2023-11-25T15:07:04,830 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,831 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,832 package, please make sure that 'atlas_densities.app.data.mtypes' is explicitly added 2023-11-25T15:07:04,832 to the `packages` configuration field. 2023-11-25T15:07:04,833 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,834 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,835 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,837 If you don't want 'atlas_densities.app.data.mtypes' to be distributed and are 2023-11-25T15:07:04,837 already explicitly excluding 'atlas_densities.app.data.mtypes' via 2023-11-25T15:07:04,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,839 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,840 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,843 even if it does not contain any `.py` files. 2023-11-25T15:07:04,843 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,844 directory, all directories are treated like packages. 2023-11-25T15:07:04,844 ******************************************************************************** 2023-11-25T15:07:04,845 !! 2023-11-25T15:07:04,846 check.warn(importable) 2023-11-25T15:07:04,846 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes.composition' is absent from the `packages` configuration. 2023-11-25T15:07:04,847 !! 2023-11-25T15:07:04,848 ******************************************************************************** 2023-11-25T15:07:04,849 ############################ 2023-11-25T15:07:04,850 # Package would be ignored # 2023-11-25T15:07:04,850 ############################ 2023-11-25T15:07:04,851 Python recognizes 'atlas_densities.app.data.mtypes.composition' as an importable package[^1], 2023-11-25T15:07:04,851 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,853 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,853 package, please make sure that 'atlas_densities.app.data.mtypes.composition' is explicitly added 2023-11-25T15:07:04,854 to the `packages` configuration field. 2023-11-25T15:07:04,855 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,856 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,857 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,861 If you don't want 'atlas_densities.app.data.mtypes.composition' to be distributed and are 2023-11-25T15:07:04,862 already explicitly excluding 'atlas_densities.app.data.mtypes.composition' via 2023-11-25T15:07:04,862 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,864 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,866 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,867 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,870 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,870 even if it does not contain any `.py` files. 2023-11-25T15:07:04,871 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,872 directory, all directories are treated like packages. 2023-11-25T15:07:04,873 ******************************************************************************** 2023-11-25T15:07:04,874 !! 2023-11-25T15:07:04,875 check.warn(importable) 2023-11-25T15:07:04,875 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles' is absent from the `packages` configuration. 2023-11-25T15:07:04,876 !! 2023-11-25T15:07:04,877 ******************************************************************************** 2023-11-25T15:07:04,878 ############################ 2023-11-25T15:07:04,878 # Package would be ignored # 2023-11-25T15:07:04,879 ############################ 2023-11-25T15:07:04,879 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles' as an importable package[^1], 2023-11-25T15:07:04,880 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,881 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,882 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles' is explicitly added 2023-11-25T15:07:04,883 to the `packages` configuration field. 2023-11-25T15:07:04,884 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,886 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,887 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,889 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,889 If you don't want 'atlas_densities.app.data.mtypes.density_profiles' to be distributed and are 2023-11-25T15:07:04,890 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles' via 2023-11-25T15:07:04,890 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,891 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,892 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,893 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,895 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,897 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,898 even if it does not contain any `.py` files. 2023-11-25T15:07:04,899 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,899 directory, all directories are treated like packages. 2023-11-25T15:07:04,900 ******************************************************************************** 2023-11-25T15:07:04,900 !! 2023-11-25T15:07:04,901 check.warn(importable) 2023-11-25T15:07:04,902 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.meta' is absent from the `packages` configuration. 2023-11-25T15:07:04,902 !! 2023-11-25T15:07:04,903 ******************************************************************************** 2023-11-25T15:07:04,903 ############################ 2023-11-25T15:07:04,904 # Package would be ignored # 2023-11-25T15:07:04,904 ############################ 2023-11-25T15:07:04,905 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.meta' as an importable package[^1], 2023-11-25T15:07:04,905 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,907 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,907 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.meta' is explicitly added 2023-11-25T15:07:04,908 to the `packages` configuration field. 2023-11-25T15:07:04,910 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,910 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,911 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,912 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,914 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.meta' to be distributed and are 2023-11-25T15:07:04,914 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.meta' via 2023-11-25T15:07:04,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,915 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,916 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,917 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,920 even if it does not contain any `.py` files. 2023-11-25T15:07:04,920 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,921 directory, all directories are treated like packages. 2023-11-25T15:07:04,922 ******************************************************************************** 2023-11-25T15:07:04,923 !! 2023-11-25T15:07:04,923 check.warn(importable) 2023-11-25T15:07:04,924 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes.density_profiles.profiles' is absent from the `packages` configuration. 2023-11-25T15:07:04,924 !! 2023-11-25T15:07:04,925 ******************************************************************************** 2023-11-25T15:07:04,926 ############################ 2023-11-25T15:07:04,926 # Package would be ignored # 2023-11-25T15:07:04,927 ############################ 2023-11-25T15:07:04,927 Python recognizes 'atlas_densities.app.data.mtypes.density_profiles.profiles' as an importable package[^1], 2023-11-25T15:07:04,928 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,929 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,930 package, please make sure that 'atlas_densities.app.data.mtypes.density_profiles.profiles' is explicitly added 2023-11-25T15:07:04,930 to the `packages` configuration field. 2023-11-25T15:07:04,931 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,932 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,933 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,935 If you don't want 'atlas_densities.app.data.mtypes.density_profiles.profiles' to be distributed and are 2023-11-25T15:07:04,935 already explicitly excluding 'atlas_densities.app.data.mtypes.density_profiles.profiles' via 2023-11-25T15:07:04,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,937 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,938 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,941 even if it does not contain any `.py` files. 2023-11-25T15:07:04,942 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,943 directory, all directories are treated like packages. 2023-11-25T15:07:04,943 ******************************************************************************** 2023-11-25T15:07:04,944 !! 2023-11-25T15:07:04,945 check.warn(importable) 2023-11-25T15:07:04,945 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'atlas_densities.app.data.mtypes.probability_map' is absent from the `packages` configuration. 2023-11-25T15:07:04,946 !! 2023-11-25T15:07:04,947 ******************************************************************************** 2023-11-25T15:07:04,948 ############################ 2023-11-25T15:07:04,948 # Package would be ignored # 2023-11-25T15:07:04,949 ############################ 2023-11-25T15:07:04,949 Python recognizes 'atlas_densities.app.data.mtypes.probability_map' as an importable package[^1], 2023-11-25T15:07:04,950 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,951 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,951 package, please make sure that 'atlas_densities.app.data.mtypes.probability_map' is explicitly added 2023-11-25T15:07:04,952 to the `packages` configuration field. 2023-11-25T15:07:04,953 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,954 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,955 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,956 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,957 If you don't want 'atlas_densities.app.data.mtypes.probability_map' to be distributed and are 2023-11-25T15:07:04,958 already explicitly excluding 'atlas_densities.app.data.mtypes.probability_map' via 2023-11-25T15:07:04,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,959 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,960 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,961 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,962 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,963 even if it does not contain any `.py` files. 2023-11-25T15:07:04,963 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,964 directory, all directories are treated like packages. 2023-11-25T15:07:04,964 ******************************************************************************** 2023-11-25T15:07:04,965 !! 2023-11-25T15:07:04,966 check.warn(importable) 2023-11-25T15:07:04,966 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.densities.data.meta' is absent from the `packages` configuration. 2023-11-25T15:07:04,967 !! 2023-11-25T15:07:04,968 ******************************************************************************** 2023-11-25T15:07:04,968 ############################ 2023-11-25T15:07:04,969 # Package would be ignored # 2023-11-25T15:07:04,969 ############################ 2023-11-25T15:07:04,970 Python recognizes 'tests.densities.data.meta' as an importable package[^1], 2023-11-25T15:07:04,970 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,971 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,972 package, please make sure that 'tests.densities.data.meta' is explicitly added 2023-11-25T15:07:04,972 to the `packages` configuration field. 2023-11-25T15:07:04,973 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,975 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,976 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,978 If you don't want 'tests.densities.data.meta' to be distributed and are 2023-11-25T15:07:04,978 already explicitly excluding 'tests.densities.data.meta' via 2023-11-25T15:07:04,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:04,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:04,980 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:04,981 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:04,982 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:04,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:04,984 even if it does not contain any `.py` files. 2023-11-25T15:07:04,985 On the other hand, currently there is no concept of package data 2023-11-25T15:07:04,985 directory, all directories are treated like packages. 2023-11-25T15:07:04,986 ******************************************************************************** 2023-11-25T15:07:04,987 !! 2023-11-25T15:07:04,988 check.warn(importable) 2023-11-25T15:07:04,988 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'tests.densities.data.mtypes' is absent from the `packages` configuration. 2023-11-25T15:07:04,989 !! 2023-11-25T15:07:04,990 ******************************************************************************** 2023-11-25T15:07:04,990 ############################ 2023-11-25T15:07:04,991 # Package would be ignored # 2023-11-25T15:07:04,991 ############################ 2023-11-25T15:07:04,991 Python recognizes 'tests.densities.data.mtypes' as an importable package[^1], 2023-11-25T15:07:04,992 but it is absent from setuptools' `packages` configuration. 2023-11-25T15:07:04,993 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-25T15:07:04,993 package, please make sure that 'tests.densities.data.mtypes' is explicitly added 2023-11-25T15:07:04,994 to the `packages` configuration field. 2023-11-25T15:07:04,995 Alternatively, you can also rely on setuptools' discovery methods 2023-11-25T15:07:04,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-25T15:07:04,996 instead of `find_packages(...)`/`find:`). 2023-11-25T15:07:04,996 You can read more about "package discovery" on setuptools documentation page: 2023-11-25T15:07:04,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-25T15:07:04,999 If you don't want 'tests.densities.data.mtypes' to be distributed and are 2023-11-25T15:07:04,999 already explicitly excluding 'tests.densities.data.mtypes' via 2023-11-25T15:07:04,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-25T15:07:05,000 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-25T15:07:05,001 combination with a more fine grained `package-data` configuration. 2023-11-25T15:07:05,002 You can read more about "package data files" on setuptools documentation page: 2023-11-25T15:07:05,003 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-25T15:07:05,004 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-25T15:07:05,005 even if it does not contain any `.py` files. 2023-11-25T15:07:05,005 On the other hand, currently there is no concept of package data 2023-11-25T15:07:05,006 directory, all directories are treated like packages. 2023-11-25T15:07:05,006 ******************************************************************************** 2023-11-25T15:07:05,007 !! 2023-11-25T15:07:05,007 check.warn(importable) 2023-11-25T15:07:05,008 copying tests/1.json -> build/lib/tests 2023-11-25T15:07:05,009 copying tests/markers_config.yaml -> build/lib/tests 2023-11-25T15:07:05,009 creating build/lib/tests/densities/data 2023-11-25T15:07:05,010 creating build/lib/tests/densities/data/meta 2023-11-25T15:07:05,010 copying tests/densities/data/meta/layers.tsv -> build/lib/tests/densities/data/meta 2023-11-25T15:07:05,011 copying tests/densities/data/meta/mapping.tsv -> build/lib/tests/densities/data/meta 2023-11-25T15:07:05,012 copying tests/densities/data/meta/mapping_exc_only.tsv -> build/lib/tests/densities/data/meta 2023-11-25T15:07:05,012 creating build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,013 copying tests/densities/data/mtypes/BP.dat -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,013 copying tests/densities/data/mtypes/L2_IPC.dat -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,014 copying tests/densities/data/mtypes/L2_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,014 copying tests/densities/data/mtypes/L3_TPC-A.dat -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,015 copying tests/densities/data/mtypes/L3_TPC-B.dat -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,016 copying tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/lib/tests/densities/data/mtypes 2023-11-25T15:07:05,017 copying atlas_densities/app/data/1.json -> build/lib/atlas_densities/app/data 2023-11-25T15:07:05,017 creating build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,018 copying atlas_densities/app/data/markers/README.rst -> build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,018 copying atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,019 copying atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,019 copying atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,020 copying atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/lib/atlas_densities/app/data/markers 2023-11-25T15:07:05,020 creating build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,021 copying atlas_densities/app/data/measurements/README.rst -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,021 copying atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,021 copying atlas_densities/app/data/measurements/homogenous_regions.csv -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,022 copying atlas_densities/app/data/measurements/measurements.csv -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,023 copying atlas_densities/app/data/measurements/mmc1.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,023 copying atlas_densities/app/data/measurements/mmc3.xlsx -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,024 copying atlas_densities/app/data/measurements/non_density_measurements.csv -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,025 copying atlas_densities/app/data/measurements/std_cells.json -> build/lib/atlas_densities/app/data/measurements 2023-11-25T15:07:05,025 creating build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,026 copying atlas_densities/app/data/metadata/README.txt -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,026 copying atlas_densities/app/data/metadata/ca1_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,027 copying atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,028 copying atlas_densities/app/data/metadata/group_ids.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,028 copying atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,029 copying atlas_densities/app/data/metadata/isocortex_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,030 copying atlas_densities/app/data/metadata/metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,030 copying atlas_densities/app/data/metadata/thalamus_metadata.json -> build/lib/atlas_densities/app/data/metadata 2023-11-25T15:07:05,031 creating build/lib/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,031 copying atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/lib/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,032 copying atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/lib/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,033 creating build/lib/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,033 copying atlas_densities/app/data/mtypes/composition/README.rst -> build/lib/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,034 copying atlas_densities/app/data/mtypes/composition/composition.yaml -> build/lib/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,035 copying atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/lib/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,035 creating build/lib/atlas_densities/app/data/mtypes/density_profiles 2023-11-25T15:07:05,036 copying atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/lib/atlas_densities/app/data/mtypes/density_profiles 2023-11-25T15:07:05,036 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,036 copying atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,037 copying atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/lib/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,037 creating build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,038 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,038 copying atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,039 copying atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,039 copying atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,040 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,040 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,041 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,041 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,042 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,042 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,043 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,043 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,044 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,044 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,045 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,045 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,046 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,047 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,047 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,048 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,048 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,048 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,049 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,049 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,050 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,050 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,051 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,051 copying atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,052 copying atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,055 copying atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,059 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,062 copying atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,063 copying atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,063 creating build/lib/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,064 copying atlas_densities/app/data/mtypes/probability_map/README.rst -> build/lib/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,065 copying atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/lib/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,097 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T15:07:05,098 !! 2023-11-25T15:07:05,099 ******************************************************************************** 2023-11-25T15:07:05,099 Please avoid running ``setup.py`` directly. 2023-11-25T15:07:05,100 Instead, use pypa/build, pypa/installer or other 2023-11-25T15:07:05,100 standards-based tools. 2023-11-25T15:07:05,102 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T15:07:05,102 ******************************************************************************** 2023-11-25T15:07:05,103 !! 2023-11-25T15:07:05,104 self.initialize_options() 2023-11-25T15:07:05,125 installing to build/bdist.linux-armv7l/wheel 2023-11-25T15:07:05,126 running install 2023-11-25T15:07:05,149 running install_lib 2023-11-25T15:07:05,177 creating build/bdist.linux-armv7l 2023-11-25T15:07:05,178 creating build/bdist.linux-armv7l/wheel 2023-11-25T15:07:05,179 creating build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,180 copying build/lib/tests/mocking_tools.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,182 creating build/bdist.linux-armv7l/wheel/tests/combination 2023-11-25T15:07:05,183 copying build/lib/tests/combination/test_annotations_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-11-25T15:07:05,185 copying build/lib/tests/combination/__init__.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-11-25T15:07:05,187 copying build/lib/tests/combination/test_markers_combinator.py -> build/bdist.linux-armv7l/wheel/tests/combination 2023-11-25T15:07:05,189 copying build/lib/tests/1.json -> build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,203 creating build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,204 copying build/lib/tests/densities/test_measurement_to_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,207 copying build/lib/tests/densities/test_optimization_initialization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,210 copying build/lib/tests/densities/test_excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,213 copying build/lib/tests/densities/test_glia_densities.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,215 copying build/lib/tests/densities/test_mtype_densities_from_map.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,218 copying build/lib/tests/densities/test_mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,221 copying build/lib/tests/densities/test_cell_counts.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,223 copying build/lib/tests/densities/test_mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,226 creating build/bdist.linux-armv7l/wheel/tests/densities/data 2023-11-25T15:07:05,227 creating build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,229 copying build/lib/tests/densities/data/mtypes/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,231 copying build/lib/tests/densities/data/mtypes/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,233 copying build/lib/tests/densities/data/mtypes/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,235 copying build/lib/tests/densities/data/mtypes/mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,238 copying build/lib/tests/densities/data/mtypes/BP.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,240 copying build/lib/tests/densities/data/mtypes/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/tests/densities/data/mtypes 2023-11-25T15:07:05,242 creating build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-11-25T15:07:05,243 copying build/lib/tests/densities/data/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-11-25T15:07:05,246 copying build/lib/tests/densities/data/meta/mapping_exc_only.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-11-25T15:07:05,248 copying build/lib/tests/densities/data/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/tests/densities/data/meta 2023-11-25T15:07:05,250 copying build/lib/tests/densities/test_fitting.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,252 copying build/lib/tests/densities/test_utils.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,255 copying build/lib/tests/densities/test_inhibitory_neuron_density_optimization.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,258 copying build/lib/tests/densities/test_inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,261 copying build/lib/tests/densities/__init__.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,262 copying build/lib/tests/densities/test_refined_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,265 copying build/lib/tests/densities/test_inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,267 copying build/lib/tests/densities/test_excel_reader.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,270 copying build/lib/tests/densities/test_cell_density.py -> build/bdist.linux-armv7l/wheel/tests/densities 2023-11-25T15:07:05,272 copying build/lib/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,275 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,277 copying build/lib/tests/markers_config.yaml -> build/bdist.linux-armv7l/wheel/tests 2023-11-25T15:07:05,279 creating build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,280 copying build/lib/tests/app/test_cell_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,283 copying build/lib/tests/app/test_mtype_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,286 copying build/lib/tests/app/__init__.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,288 copying build/lib/tests/app/test_refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,290 copying build/lib/tests/app/test_combination.py -> build/bdist.linux-armv7l/wheel/tests/app 2023-11-25T15:07:05,292 creating build/bdist.linux-armv7l/wheel/atlas_densities 2023-11-25T15:07:05,293 copying build/lib/atlas_densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-11-25T15:07:05,297 creating build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-11-25T15:07:05,298 copying build/lib/atlas_densities/combination/annotations_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-11-25T15:07:05,300 copying build/lib/atlas_densities/combination/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-11-25T15:07:05,302 copying build/lib/atlas_densities/combination/markers_combinator.py -> build/bdist.linux-armv7l/wheel/atlas_densities/combination 2023-11-25T15:07:05,305 copying build/lib/atlas_densities/version.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-11-25T15:07:05,307 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,309 copying build/lib/atlas_densities/densities/cell_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,312 copying build/lib/atlas_densities/densities/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,315 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_optimization.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,318 copying build/lib/atlas_densities/densities/mtype_densities_from_composition.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,320 copying build/lib/atlas_densities/densities/inhibitory_neuron_densities_helper.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,323 copying build/lib/atlas_densities/densities/excitatory_inhibitory_splitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,325 copying build/lib/atlas_densities/densities/measurement_to_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,328 creating build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:05,329 copying build/lib/atlas_densities/densities/mtype_densities_from_map/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:05,332 copying build/lib/atlas_densities/densities/mtype_densities_from_map/create.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:05,334 copying build/lib/atlas_densities/densities/mtype_densities_from_map/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities/mtype_densities_from_map 2023-11-25T15:07:05,336 copying build/lib/atlas_densities/densities/excel_reader.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,339 copying build/lib/atlas_densities/densities/refined_inhibitory_neuron_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,342 copying build/lib/atlas_densities/densities/fitting.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,344 copying build/lib/atlas_densities/densities/glia_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,347 copying build/lib/atlas_densities/densities/cell_counts.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,350 copying build/lib/atlas_densities/densities/mtype_densities_from_profiles.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,353 copying build/lib/atlas_densities/densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,354 copying build/lib/atlas_densities/densities/inhibitory_neuron_density.py -> build/bdist.linux-armv7l/wheel/atlas_densities/densities 2023-11-25T15:07:05,357 copying build/lib/atlas_densities/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-11-25T15:07:05,359 copying build/lib/atlas_densities/exceptions.py -> build/bdist.linux-armv7l/wheel/atlas_densities 2023-11-25T15:07:05,362 creating build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,363 copying build/lib/atlas_densities/app/utils.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,365 copying build/lib/atlas_densities/app/cell_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,368 copying build/lib/atlas_densities/app/mtype_densities.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,371 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-11-25T15:07:05,373 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,375 copying build/lib/atlas_densities/app/data/metadata/group_ids.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,377 copying build/lib/atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,379 copying build/lib/atlas_densities/app/data/metadata/metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,381 copying build/lib/atlas_densities/app/data/metadata/isocortex_23_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,383 copying build/lib/atlas_densities/app/data/metadata/thalamus_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,385 copying build/lib/atlas_densities/app/data/metadata/ca1_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,387 copying build/lib/atlas_densities/app/data/metadata/README.txt -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,389 copying build/lib/atlas_densities/app/data/metadata/isocortex_metadata.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/metadata 2023-11-25T15:07:05,391 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,392 copying build/lib/atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,394 copying build/lib/atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,396 copying build/lib/atlas_densities/app/data/markers/realigned_slices_bbp.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,398 copying build/lib/atlas_densities/app/data/markers/realigned_slices_ccfv2.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,400 copying build/lib/atlas_densities/app/data/markers/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/markers 2023-11-25T15:07:05,402 copying build/lib/atlas_densities/app/data/1.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-11-25T15:07:05,419 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,420 copying build/lib/atlas_densities/app/data/measurements/std_cells.json -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,426 copying build/lib/atlas_densities/app/data/measurements/gaba_papers.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,430 copying build/lib/atlas_densities/app/data/measurements/mmc3.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,437 copying build/lib/atlas_densities/app/data/measurements/mmc1.xlsx -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,445 copying build/lib/atlas_densities/app/data/measurements/measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,459 copying build/lib/atlas_densities/app/data/measurements/homogenous_regions.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,462 copying build/lib/atlas_densities/app/data/measurements/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,465 copying build/lib/atlas_densities/app/data/measurements/non_density_measurements.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/measurements 2023-11-25T15:07:05,468 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,469 copying build/lib/atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,471 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,472 copying build/lib/atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,474 copying build/lib/atlas_densities/app/data/mtypes/composition/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,476 copying build/lib/atlas_densities/app/data/mtypes/composition/composition.yaml -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/composition 2023-11-25T15:07:05,479 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,480 copying build/lib/atlas_densities/app/data/mtypes/probability_map/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,482 copying build/lib/atlas_densities/app/data/mtypes/probability_map/probability_map.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/probability_map 2023-11-25T15:07:05,500 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2023-11-25T15:07:05,502 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,503 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,505 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,507 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,509 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,511 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,513 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,514 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,516 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,518 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,520 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,522 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,524 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,526 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,527 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,529 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,531 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,533 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,535 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,537 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,539 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,540 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,542 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,544 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,546 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,547 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,549 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,551 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,553 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,554 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,556 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,558 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,560 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,561 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/profiles 2023-11-25T15:07:05,563 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/README.rst -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles 2023-11-25T15:07:05,566 creating build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,567 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,569 copying build/lib/atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes/density_profiles/meta 2023-11-25T15:07:05,570 copying build/lib/atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data/mtypes 2023-11-25T15:07:05,572 copying build/lib/atlas_densities/app/data/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app/data 2023-11-25T15:07:05,574 copying build/lib/atlas_densities/app/__init__.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,576 copying build/lib/atlas_densities/app/cli.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,577 copying build/lib/atlas_densities/app/combination.py -> build/bdist.linux-armv7l/wheel/atlas_densities/app 2023-11-25T15:07:05,580 running install_egg_info 2023-11-25T15:07:05,610 Copying atlas_densities.egg-info to build/bdist.linux-armv7l/wheel/atlas_densities-0.2.1-py3.11.egg-info 2023-11-25T15:07:05,624 running install_scripts 2023-11-25T15:07:05,646 creating build/bdist.linux-armv7l/wheel/atlas_densities-0.2.1.dist-info/WHEEL 2023-11-25T15:07:05,648 creating '/tmp/pip-wheel-66hr51kt/atlas_densities-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T15:07:05,650 adding 'atlas_densities/__init__.py' 2023-11-25T15:07:05,652 adding 'atlas_densities/exceptions.py' 2023-11-25T15:07:05,654 adding 'atlas_densities/utils.py' 2023-11-25T15:07:05,655 adding 'atlas_densities/version.py' 2023-11-25T15:07:05,657 adding 'atlas_densities/app/__init__.py' 2023-11-25T15:07:05,662 adding 'atlas_densities/app/cell_densities.py' 2023-11-25T15:07:05,664 adding 'atlas_densities/app/cli.py' 2023-11-25T15:07:05,666 adding 'atlas_densities/app/combination.py' 2023-11-25T15:07:05,668 adding 'atlas_densities/app/mtype_densities.py' 2023-11-25T15:07:05,670 adding 'atlas_densities/app/utils.py' 2023-11-25T15:07:05,699 adding 'atlas_densities/app/data/1.json' 2023-11-25T15:07:05,705 adding 'atlas_densities/app/data/__init__.py' 2023-11-25T15:07:05,707 adding 'atlas_densities/app/data/markers/README.rst' 2023-11-25T15:07:05,709 adding 'atlas_densities/app/data/markers/combine_markers_ccfv2_config.yaml' 2023-11-25T15:07:05,710 adding 'atlas_densities/app/data/markers/fit_average_densities_ccfv2_config.yaml' 2023-11-25T15:07:05,711 adding 'atlas_densities/app/data/markers/realigned_slices_bbp.json' 2023-11-25T15:07:05,713 adding 'atlas_densities/app/data/markers/realigned_slices_ccfv2.json' 2023-11-25T15:07:05,714 adding 'atlas_densities/app/data/measurements/README.rst' 2023-11-25T15:07:05,721 adding 'atlas_densities/app/data/measurements/gaba_papers.xlsx' 2023-11-25T15:07:05,723 adding 'atlas_densities/app/data/measurements/homogenous_regions.csv' 2023-11-25T15:07:05,763 adding 'atlas_densities/app/data/measurements/measurements.csv' 2023-11-25T15:07:05,812 adding 'atlas_densities/app/data/measurements/mmc1.xlsx' 2023-11-25T15:07:05,850 adding 'atlas_densities/app/data/measurements/mmc3.xlsx' 2023-11-25T15:07:05,855 adding 'atlas_densities/app/data/measurements/non_density_measurements.csv' 2023-11-25T15:07:05,868 adding 'atlas_densities/app/data/measurements/std_cells.json' 2023-11-25T15:07:05,872 adding 'atlas_densities/app/data/metadata/README.txt' 2023-11-25T15:07:05,873 adding 'atlas_densities/app/data/metadata/ca1_metadata.json' 2023-11-25T15:07:05,874 adding 'atlas_densities/app/data/metadata/excitatory-inhibitory-splitting.json' 2023-11-25T15:07:05,875 adding 'atlas_densities/app/data/metadata/group_ids.json' 2023-11-25T15:07:05,876 adding 'atlas_densities/app/data/metadata/isocortex_23_metadata.json' 2023-11-25T15:07:05,878 adding 'atlas_densities/app/data/metadata/isocortex_metadata.json' 2023-11-25T15:07:05,879 adding 'atlas_densities/app/data/metadata/metadata.json' 2023-11-25T15:07:05,880 adding 'atlas_densities/app/data/metadata/thalamus_metadata.json' 2023-11-25T15:07:05,882 adding 'atlas_densities/app/data/mtypes/mapping_cortex_all_to_exc_mtypes.csv' 2023-11-25T15:07:05,883 adding 'atlas_densities/app/data/mtypes/mtypes_probability_map_config.yaml' 2023-11-25T15:07:05,885 adding 'atlas_densities/app/data/mtypes/composition/README.rst' 2023-11-25T15:07:05,886 adding 'atlas_densities/app/data/mtypes/composition/composition.yaml' 2023-11-25T15:07:05,888 adding 'atlas_densities/app/data/mtypes/composition/neurons-mtype-taxonomy.tsv' 2023-11-25T15:07:05,889 adding 'atlas_densities/app/data/mtypes/density_profiles/README.rst' 2023-11-25T15:07:05,891 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/layers.tsv' 2023-11-25T15:07:05,892 adding 'atlas_densities/app/data/mtypes/density_profiles/meta/mapping.tsv' 2023-11-25T15:07:05,895 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BP.dat' 2023-11-25T15:07:05,896 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/BTC.dat' 2023-11-25T15:07:05,897 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/CHC.dat' 2023-11-25T15:07:05,898 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/DBC.dat' 2023-11-25T15:07:05,899 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_DAC.dat' 2023-11-25T15:07:05,900 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_HAC.dat' 2023-11-25T15:07:05,901 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_LAC.dat' 2023-11-25T15:07:05,902 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-DA.dat' 2023-11-25T15:07:05,903 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_NGC-SA.dat' 2023-11-25T15:07:05,904 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L1_SAC.dat' 2023-11-25T15:07:05,905 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_IPC.dat' 2023-11-25T15:07:05,906 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-A.dat' 2023-11-25T15:07:05,907 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L2_TPC-B.dat' 2023-11-25T15:07:05,909 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-A.dat' 2023-11-25T15:07:05,910 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L3_TPC-B.dat' 2023-11-25T15:07:05,911 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_SSC.dat' 2023-11-25T15:07:05,912 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_TPC.dat' 2023-11-25T15:07:05,913 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L4_UPC.dat' 2023-11-25T15:07:05,914 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TPC-C.dat' 2023-11-25T15:07:05,915 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-A.dat' 2023-11-25T15:07:05,916 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_TTPC-B.dat' 2023-11-25T15:07:05,917 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L5_UPC.dat' 2023-11-25T15:07:05,918 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_BPC.dat' 2023-11-25T15:07:05,919 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_HPC.dat' 2023-11-25T15:07:05,921 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_IPC.dat' 2023-11-25T15:07:05,922 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-A.dat' 2023-11-25T15:07:05,923 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_TPC-C.dat' 2023-11-25T15:07:05,924 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/L6_UPC.dat' 2023-11-25T15:07:05,925 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/LBC.dat' 2023-11-25T15:07:05,926 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/MC.dat' 2023-11-25T15:07:05,927 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NBC.dat' 2023-11-25T15:07:05,929 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/NGC.dat' 2023-11-25T15:07:05,930 adding 'atlas_densities/app/data/mtypes/density_profiles/profiles/SBC.dat' 2023-11-25T15:07:05,932 adding 'atlas_densities/app/data/mtypes/probability_map/README.rst' 2023-11-25T15:07:05,956 adding 'atlas_densities/app/data/mtypes/probability_map/probability_map.csv' 2023-11-25T15:07:05,966 adding 'atlas_densities/combination/__init__.py' 2023-11-25T15:07:05,967 adding 'atlas_densities/combination/annotations_combinator.py' 2023-11-25T15:07:05,969 adding 'atlas_densities/combination/markers_combinator.py' 2023-11-25T15:07:05,971 adding 'atlas_densities/densities/__init__.py' 2023-11-25T15:07:05,973 adding 'atlas_densities/densities/cell_counts.py' 2023-11-25T15:07:05,975 adding 'atlas_densities/densities/cell_density.py' 2023-11-25T15:07:05,978 adding 'atlas_densities/densities/excel_reader.py' 2023-11-25T15:07:05,980 adding 'atlas_densities/densities/excitatory_inhibitory_splitting.py' 2023-11-25T15:07:05,983 adding 'atlas_densities/densities/fitting.py' 2023-11-25T15:07:05,985 adding 'atlas_densities/densities/glia_densities.py' 2023-11-25T15:07:05,987 adding 'atlas_densities/densities/inhibitory_neuron_densities_helper.py' 2023-11-25T15:07:05,991 adding 'atlas_densities/densities/inhibitory_neuron_densities_optimization.py' 2023-11-25T15:07:05,993 adding 'atlas_densities/densities/inhibitory_neuron_density.py' 2023-11-25T15:07:05,995 adding 'atlas_densities/densities/measurement_to_density.py' 2023-11-25T15:07:05,997 adding 'atlas_densities/densities/mtype_densities_from_composition.py' 2023-11-25T15:07:05,999 adding 'atlas_densities/densities/mtype_densities_from_profiles.py' 2023-11-25T15:07:06,002 adding 'atlas_densities/densities/refined_inhibitory_neuron_densities.py' 2023-11-25T15:07:06,005 adding 'atlas_densities/densities/utils.py' 2023-11-25T15:07:06,007 adding 'atlas_densities/densities/mtype_densities_from_map/__init__.py' 2023-11-25T15:07:06,009 adding 'atlas_densities/densities/mtype_densities_from_map/create.py' 2023-11-25T15:07:06,010 adding 'atlas_densities/densities/mtype_densities_from_map/utils.py' 2023-11-25T15:07:06,039 adding 'tests/1.json' 2023-11-25T15:07:06,046 adding 'tests/__init__.py' 2023-11-25T15:07:06,047 adding 'tests/markers_config.yaml' 2023-11-25T15:07:06,048 adding 'tests/mocking_tools.py' 2023-11-25T15:07:06,049 adding 'tests/test_utils.py' 2023-11-25T15:07:06,051 adding 'tests/app/__init__.py' 2023-11-25T15:07:06,053 adding 'tests/app/test_cell_densities.py' 2023-11-25T15:07:06,054 adding 'tests/app/test_combination.py' 2023-11-25T15:07:06,056 adding 'tests/app/test_mtype_densities.py' 2023-11-25T15:07:06,058 adding 'tests/app/test_refined_inhibitory_neuron_densities.py' 2023-11-25T15:07:06,059 adding 'tests/combination/__init__.py' 2023-11-25T15:07:06,061 adding 'tests/combination/test_annotations_combinator.py' 2023-11-25T15:07:06,062 adding 'tests/combination/test_markers_combinator.py' 2023-11-25T15:07:06,064 adding 'tests/densities/__init__.py' 2023-11-25T15:07:06,065 adding 'tests/densities/test_cell_counts.py' 2023-11-25T15:07:06,067 adding 'tests/densities/test_cell_density.py' 2023-11-25T15:07:06,069 adding 'tests/densities/test_excel_reader.py' 2023-11-25T15:07:06,070 adding 'tests/densities/test_excitatory_inhibitory_splitting.py' 2023-11-25T15:07:06,073 adding 'tests/densities/test_fitting.py' 2023-11-25T15:07:06,074 adding 'tests/densities/test_glia_densities.py' 2023-11-25T15:07:06,076 adding 'tests/densities/test_inhibitory_neuron_densities_helper.py' 2023-11-25T15:07:06,077 adding 'tests/densities/test_inhibitory_neuron_density.py' 2023-11-25T15:07:06,079 adding 'tests/densities/test_inhibitory_neuron_density_optimization.py' 2023-11-25T15:07:06,081 adding 'tests/densities/test_measurement_to_density.py' 2023-11-25T15:07:06,082 adding 'tests/densities/test_mtype_densities_from_composition.py' 2023-11-25T15:07:06,084 adding 'tests/densities/test_mtype_densities_from_map.py' 2023-11-25T15:07:06,086 adding 'tests/densities/test_mtype_densities_from_profiles.py' 2023-11-25T15:07:06,088 adding 'tests/densities/test_optimization_initialization.py' 2023-11-25T15:07:06,090 adding 'tests/densities/test_refined_inhibitory_neuron_density.py' 2023-11-25T15:07:06,092 adding 'tests/densities/test_utils.py' 2023-11-25T15:07:06,094 adding 'tests/densities/data/meta/layers.tsv' 2023-11-25T15:07:06,095 adding 'tests/densities/data/meta/mapping.tsv' 2023-11-25T15:07:06,096 adding 'tests/densities/data/meta/mapping_exc_only.tsv' 2023-11-25T15:07:06,098 adding 'tests/densities/data/mtypes/BP.dat' 2023-11-25T15:07:06,099 adding 'tests/densities/data/mtypes/L2_IPC.dat' 2023-11-25T15:07:06,100 adding 'tests/densities/data/mtypes/L2_TPC-A.dat' 2023-11-25T15:07:06,101 adding 'tests/densities/data/mtypes/L3_TPC-A.dat' 2023-11-25T15:07:06,102 adding 'tests/densities/data/mtypes/L3_TPC-B.dat' 2023-11-25T15:07:06,103 adding 'tests/densities/data/mtypes/mtype-taxonomy.tsv' 2023-11-25T15:07:06,104 adding 'atlas_densities-0.2.1.dist-info/AUTHORS.txt' 2023-11-25T15:07:06,106 adding 'atlas_densities-0.2.1.dist-info/LICENSE.txt' 2023-11-25T15:07:06,109 adding 'atlas_densities-0.2.1.dist-info/METADATA' 2023-11-25T15:07:06,110 adding 'atlas_densities-0.2.1.dist-info/WHEEL' 2023-11-25T15:07:06,111 adding 'atlas_densities-0.2.1.dist-info/entry_points.txt' 2023-11-25T15:07:06,112 adding 'atlas_densities-0.2.1.dist-info/top_level.txt' 2023-11-25T15:07:06,114 adding 'atlas_densities-0.2.1.dist-info/RECORD' 2023-11-25T15:07:06,129 removing build/bdist.linux-armv7l/wheel 2023-11-25T15:07:06,287 Building wheel for atlas-densities (setup.py): finished with status 'done' 2023-11-25T15:07:06,302 Created wheel for atlas-densities: filename=atlas_densities-0.2.1-py3-none-any.whl size=1071078 sha256=7b2fb4c8ebfb6deda2a12d883dbdfeb529aa0b2bfbc4034d0808edd6a289bcee 2023-11-25T15:07:06,303 Stored in directory: /tmp/pip-ephem-wheel-cache-emssngmf/wheels/02/f2/33/2d6b56f67e5009f009056fbef6851f20064e5fcd626d720d7f 2023-11-25T15:07:06,321 Successfully built atlas-densities 2023-11-25T15:07:06,356 Removed build tracker: '/tmp/pip-build-tracker-vfxwcgha'