2023-11-25T15:48:36,927 Created temporary directory: /tmp/pip-build-tracker-1vme0n40 2023-11-25T15:48:36,928 Initialized build tracking at /tmp/pip-build-tracker-1vme0n40 2023-11-25T15:48:36,929 Created build tracker: /tmp/pip-build-tracker-1vme0n40 2023-11-25T15:48:36,929 Entered build tracker: /tmp/pip-build-tracker-1vme0n40 2023-11-25T15:48:36,930 Created temporary directory: /tmp/pip-wheel-tiobx81n 2023-11-25T15:48:36,933 Created temporary directory: /tmp/pip-ephem-wheel-cache-3fzs7ec8 2023-11-25T15:48:36,955 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T15:48:36,958 2 location(s) to search for versions of sequana: 2023-11-25T15:48:36,958 * https://pypi.org/simple/sequana/ 2023-11-25T15:48:36,958 * https://www.piwheels.org/simple/sequana/ 2023-11-25T15:48:36,959 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-11-25T15:48:36,960 Getting page https://pypi.org/simple/sequana/ 2023-11-25T15:48:36,961 Found index url https://pypi.org/simple/ 2023-11-25T15:48:37,173 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-11-25T15:48:37,189 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-11-25T15:48:37,189 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-11-25T15:48:37,190 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-11-25T15:48:37,191 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.1 2023-11-25T15:48:37,191 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.2 2023-11-25T15:48:37,192 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.4 2023-11-25T15:48:37,193 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.5 2023-11-25T15:48:37,193 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.6 2023-11-25T15:48:37,194 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.7 2023-11-25T15:48:37,195 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.8 2023-11-25T15:48:37,196 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.9 2023-11-25T15:48:37,196 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.10 2023-11-25T15:48:37,197 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.11 2023-11-25T15:48:37,198 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.12 2023-11-25T15:48:37,198 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.13 2023-11-25T15:48:37,199 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.14 2023-11-25T15:48:37,200 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.15 2023-11-25T15:48:37,201 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.16 2023-11-25T15:48:37,201 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2023-11-25T15:48:37,202 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.18 2023-11-25T15:48:37,202 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.19 2023-11-25T15:48:37,203 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2023-11-25T15:48:37,203 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2023-11-25T15:48:37,204 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2023-11-25T15:48:37,205 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2023-11-25T15:48:37,205 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2023-11-25T15:48:37,206 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2023-11-25T15:48:37,207 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2023-11-25T15:48:37,207 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-11-25T15:48:37,208 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-11-25T15:48:37,209 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-11-25T15:48:37,209 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-11-25T15:48:37,210 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2023-11-25T15:48:37,211 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2023-11-25T15:48:37,212 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2023-11-25T15:48:37,212 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2023-11-25T15:48:37,213 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2023-11-25T15:48:37,213 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2023-11-25T15:48:37,214 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2023-11-25T15:48:37,214 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2023-11-25T15:48:37,215 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2023-11-25T15:48:37,216 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2023-11-25T15:48:37,216 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2023-11-25T15:48:37,217 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2023-11-25T15:48:37,218 Found link https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.1 2023-11-25T15:48:37,218 Found link https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.2 2023-11-25T15:48:37,219 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.3 2023-11-25T15:48:37,220 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.4 2023-11-25T15:48:37,221 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.5 2023-11-25T15:48:37,221 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.6 2023-11-25T15:48:37,222 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.9.0 2023-11-25T15:48:37,223 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.9.1 2023-11-25T15:48:37,224 Found link 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https://files.pythonhosted.org/packages/4f/9f/8802f849199c88d3f52625b9792bbb38e91dc59d6586c6b784f2c8352019/sequana-0.15.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.0 2023-11-25T15:48:37,242 Found link https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.1 2023-11-25T15:48:37,243 Found link https://files.pythonhosted.org/packages/cf/49/e643ec7dcaf9e6e963126a186f1d042ca416f308d820e11fefd27518a5b5/sequana-0.15.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.2 2023-11-25T15:48:37,244 Found link https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.3 2023-11-25T15:48:37,244 Found link 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2023-11-25T15:48:37,466 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.18-py3-none-any.whl#sha256=325c4e727752bdcd6411fc583c6c67f5c153ccefe6a6fa61a5bb136c4cacb24f (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,466 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.17.1-py3-none-any.whl#sha256=42ab5898af408588dff9d91d1e90f24ce831d1fc6c6298c2ab58efd248995a84 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,466 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.16-py3-none-any.whl#sha256=8f1f80eb30386474322cbc9cb6d8ccb98397b4ebefa290886f2631f3b3540d56 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,467 Skipping link: No binaries permitted for sequana: 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2023-11-25T15:48:37,469 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.11-py3-none-any.whl#sha256=0514b5d913fc13bc5bd0581143c312ce0e8962bd493655d11666cd1ffc4cae27 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,470 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,471 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.9-py3-none-any.whl#sha256=d388a5c84fd9f1adb5094860b47e54b8ec1fc5dd60da99b5b7a4bd92471e1e5b (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,471 Skipping link: No binaries permitted for sequana: 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2023-11-25T15:48:37,474 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,474 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,475 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,475 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,476 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,476 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-11-25T15:48:37,477 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-11-25T15:48:37,477 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-11-25T15:48:37,506 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-11-25T15:48:37,524 Collecting sequana==0.16.0 2023-11-25T15:48:37,527 Created temporary directory: /tmp/pip-unpack-ao8dh16x 2023-11-25T15:48:37,824 Downloading sequana-0.16.0.tar.gz (1.6 MB) 2023-11-25T15:48:38,797 Added sequana==0.16.0 from https://files.pythonhosted.org/packages/38/8d/c3b11c7cb71d6e6aea0ff528c07ad849799ee7f840686edd60b5e60d4f15/sequana-0.16.0.tar.gz to build tracker '/tmp/pip-build-tracker-1vme0n40' 2023-11-25T15:48:38,798 Running setup.py (path:/tmp/pip-wheel-tiobx81n/sequana_99d48704e00b4d038a149765f33d92a3/setup.py) egg_info for package sequana 2023-11-25T15:48:38,799 Created temporary directory: /tmp/pip-pip-egg-info-iij3_wlo 2023-11-25T15:48:38,800 Preparing metadata (setup.py): started 2023-11-25T15:48:38,801 Running command python setup.py egg_info 2023-11-25T15:48:39,870 running egg_info 2023-11-25T15:48:39,872 creating /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info 2023-11-25T15:48:39,896 writing /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/PKG-INFO 2023-11-25T15:48:39,907 writing dependency_links to /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/dependency_links.txt 2023-11-25T15:48:39,909 writing entry points to /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/entry_points.txt 2023-11-25T15:48:39,914 writing requirements to /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/requires.txt 2023-11-25T15:48:39,915 writing top-level names to /tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/top_level.txt 2023-11-25T15:48:39,917 writing manifest file '/tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/SOURCES.txt' 2023-11-25T15:48:40,180 reading manifest file '/tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/SOURCES.txt' 2023-11-25T15:48:40,182 reading manifest template 'MANIFEST.in' 2023-11-25T15:48:40,184 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-11-25T15:48:40,185 warning: no previously-included files matching '*pyc' found under directory '*' 2023-11-25T15:48:40,322 warning: no files found matching 'test/requirements*txt' 2023-11-25T15:48:40,323 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-11-25T15:48:40,324 warning: no previously-included files matching '*' found under directory 'test' 2023-11-25T15:48:40,325 warning: no previously-included files matching '*' found under directory 'doc' 2023-11-25T15:48:40,326 warning: no previously-included files found matching 'sequana/rm2.py' 2023-11-25T15:48:40,326 adding license file 'LICENSE' 2023-11-25T15:48:40,338 writing manifest file '/tmp/pip-pip-egg-info-iij3_wlo/sequana.egg-info/SOURCES.txt' 2023-11-25T15:48:40,445 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T15:48:40,449 Source in /tmp/pip-wheel-tiobx81n/sequana_99d48704e00b4d038a149765f33d92a3 has version 0.16.0, which satisfies requirement sequana==0.16.0 from https://files.pythonhosted.org/packages/38/8d/c3b11c7cb71d6e6aea0ff528c07ad849799ee7f840686edd60b5e60d4f15/sequana-0.16.0.tar.gz 2023-11-25T15:48:40,450 Removed sequana==0.16.0 from https://files.pythonhosted.org/packages/38/8d/c3b11c7cb71d6e6aea0ff528c07ad849799ee7f840686edd60b5e60d4f15/sequana-0.16.0.tar.gz from build tracker '/tmp/pip-build-tracker-1vme0n40' 2023-11-25T15:48:40,457 Created temporary directory: /tmp/pip-unpack-j9j3ddem 2023-11-25T15:48:40,458 Created temporary directory: /tmp/pip-unpack-1_31yh1c 2023-11-25T15:48:40,548 Building wheels for collected packages: sequana 2023-11-25T15:48:40,552 Created temporary directory: /tmp/pip-wheel-sktg1sdu 2023-11-25T15:48:40,552 Building wheel for sequana (setup.py): started 2023-11-25T15:48:40,553 Destination directory: /tmp/pip-wheel-sktg1sdu 2023-11-25T15:48:40,554 Running command python setup.py bdist_wheel 2023-11-25T15:48:41,596 running bdist_wheel 2023-11-25T15:48:41,691 running build 2023-11-25T15:48:41,692 running build_py 2023-11-25T15:48:41,720 creating build 2023-11-25T15:48:41,720 creating build/lib 2023-11-25T15:48:41,721 creating build/lib/sequana 2023-11-25T15:48:41,722 copying sequana/demultiplex.py -> build/lib/sequana 2023-11-25T15:48:41,725 copying sequana/mixture.py -> build/lib/sequana 2023-11-25T15:48:41,727 copying sequana/sequence.py -> build/lib/sequana 2023-11-25T15:48:41,729 copying sequana/vst.py -> build/lib/sequana 2023-11-25T15:48:41,731 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-11-25T15:48:41,733 copying sequana/fasta.py -> build/lib/sequana 2023-11-25T15:48:41,736 copying sequana/contigs.py -> build/lib/sequana 2023-11-25T15:48:41,738 copying sequana/iem.py -> build/lib/sequana 2023-11-25T15:48:41,741 copying sequana/lazy.py -> build/lib/sequana 2023-11-25T15:48:41,742 copying sequana/idr.py -> build/lib/sequana 2023-11-25T15:48:41,744 copying sequana/summary.py -> build/lib/sequana 2023-11-25T15:48:41,746 copying sequana/cnv.py -> build/lib/sequana 2023-11-25T15:48:41,748 copying sequana/macs3.py -> build/lib/sequana 2023-11-25T15:48:41,750 copying sequana/bamtools.py -> build/lib/sequana 2023-11-25T15:48:41,754 copying sequana/pacbio.py -> build/lib/sequana 2023-11-25T15:48:41,757 copying sequana/fastq.py -> build/lib/sequana 2023-11-25T15:48:41,760 copying sequana/genbank.py -> build/lib/sequana 2023-11-25T15:48:41,762 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-11-25T15:48:41,764 copying sequana/gff3.py -> build/lib/sequana 2023-11-25T15:48:41,767 copying sequana/rnadiff.py -> build/lib/sequana 2023-11-25T15:48:41,771 copying sequana/bedtools.py -> build/lib/sequana 2023-11-25T15:48:41,775 copying sequana/datatools.py -> build/lib/sequana 2023-11-25T15:48:41,777 copying sequana/kegg.py -> build/lib/sequana 2023-11-25T15:48:41,779 copying sequana/find_motif.py -> build/lib/sequana 2023-11-25T15:48:41,781 copying sequana/coverage.py -> build/lib/sequana 2023-11-25T15:48:41,783 copying sequana/running_median.py -> build/lib/sequana 2023-11-25T15:48:41,785 copying sequana/laa.py -> build/lib/sequana 2023-11-25T15:48:41,788 copying sequana/featurecounts.py -> build/lib/sequana 2023-11-25T15:48:41,790 copying sequana/compare.py -> build/lib/sequana 2023-11-25T15:48:41,792 copying sequana/phred.py -> build/lib/sequana 2023-11-25T15:48:41,794 copying sequana/iuapc.py -> build/lib/sequana 2023-11-25T15:48:41,796 copying sequana/misc.py -> build/lib/sequana 2023-11-25T15:48:41,798 copying sequana/databases.py -> build/lib/sequana 2023-11-25T15:48:41,800 copying sequana/mgi.py -> build/lib/sequana 2023-11-25T15:48:41,802 copying sequana/vcftools.py -> build/lib/sequana 2023-11-25T15:48:41,804 copying sequana/phantom.py -> build/lib/sequana 2023-11-25T15:48:41,806 copying sequana/salmon.py -> build/lib/sequana 2023-11-25T15:48:41,808 copying sequana/trf.py -> build/lib/sequana 2023-11-25T15:48:41,810 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-11-25T15:48:41,813 copying sequana/homer.py -> build/lib/sequana 2023-11-25T15:48:41,814 copying sequana/canu_scanner.py -> build/lib/sequana 2023-11-25T15:48:41,816 copying sequana/fastqc.py -> build/lib/sequana 2023-11-25T15:48:41,818 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-11-25T15:48:41,821 copying sequana/assembly.py -> build/lib/sequana 2023-11-25T15:48:41,823 copying sequana/errors.py -> build/lib/sequana 2023-11-25T15:48:41,824 copying sequana/mh.py -> build/lib/sequana 2023-11-25T15:48:41,826 copying sequana/codon.py -> build/lib/sequana 2023-11-25T15:48:41,828 copying sequana/krona.py -> build/lib/sequana 2023-11-25T15:48:41,830 copying sequana/tools.py -> build/lib/sequana 2023-11-25T15:48:41,832 copying sequana/vcf_filter.py -> build/lib/sequana 2023-11-25T15:48:41,835 copying sequana/stats.py -> build/lib/sequana 2023-11-25T15:48:41,837 copying sequana/taxonomy.py -> build/lib/sequana 2023-11-25T15:48:41,839 copying sequana/isoseq.py -> build/lib/sequana 2023-11-25T15:48:41,842 copying sequana/cpg_islands.py -> build/lib/sequana 2023-11-25T15:48:41,843 copying sequana/kmer.py -> build/lib/sequana 2023-11-25T15:48:41,845 copying sequana/G4hunter.py -> build/lib/sequana 2023-11-25T15:48:41,847 copying sequana/frip.py -> build/lib/sequana 2023-11-25T15:48:41,849 copying sequana/itol.py -> build/lib/sequana 2023-11-25T15:48:41,851 copying sequana/criteria.py -> build/lib/sequana 2023-11-25T15:48:41,853 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-11-25T15:48:41,855 copying sequana/bed.py -> build/lib/sequana 2023-11-25T15:48:41,857 copying sequana/cigar.py -> build/lib/sequana 2023-11-25T15:48:41,860 copying sequana/lazyimports.py -> build/lib/sequana 2023-11-25T15:48:41,862 copying sequana/sniffer.py -> build/lib/sequana 2023-11-25T15:48:41,863 copying sequana/snpeff.py -> build/lib/sequana 2023-11-25T15:48:41,865 copying sequana/mpileup.py -> build/lib/sequana 2023-11-25T15:48:41,868 copying sequana/annotation.py -> build/lib/sequana 2023-11-25T15:48:41,869 copying sequana/__init__.py -> build/lib/sequana 2023-11-25T15:48:41,871 copying sequana/protein.py -> build/lib/sequana 2023-11-25T15:48:41,873 copying sequana/ribodesigner.py -> build/lib/sequana 2023-11-25T15:48:41,876 creating build/lib/sequana/enrichment 2023-11-25T15:48:41,877 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,879 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,881 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,883 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,886 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,887 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,890 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,892 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,895 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-11-25T15:48:41,897 creating build/lib/sequana/utils 2023-11-25T15:48:41,898 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-11-25T15:48:41,900 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-11-25T15:48:41,902 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-11-25T15:48:41,904 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-11-25T15:48:41,905 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-11-25T15:48:41,907 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-11-25T15:48:41,908 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-11-25T15:48:41,910 creating build/lib/sequana/multiqc 2023-11-25T15:48:41,911 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,913 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,915 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,917 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,919 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,921 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,923 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,927 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,929 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,931 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,933 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,934 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-11-25T15:48:41,937 creating build/lib/sequana/scripts 2023-11-25T15:48:41,938 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-11-25T15:48:41,940 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-11-25T15:48:41,942 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-11-25T15:48:41,945 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-11-25T15:48:41,946 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-11-25T15:48:41,948 creating build/lib/sequana/kraken 2023-11-25T15:48:41,949 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-11-25T15:48:41,952 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-11-25T15:48:41,954 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-11-25T15:48:41,956 creating build/lib/sequana/resources 2023-11-25T15:48:41,957 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-11-25T15:48:41,959 creating build/lib/sequana/rules 2023-11-25T15:48:41,960 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-11-25T15:48:41,962 creating build/lib/sequana/viz 2023-11-25T15:48:41,963 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-11-25T15:48:41,965 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-11-25T15:48:41,967 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-11-25T15:48:41,969 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-11-25T15:48:41,971 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-11-25T15:48:41,973 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-11-25T15:48:41,975 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-11-25T15:48:41,976 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-11-25T15:48:41,979 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-11-25T15:48:41,980 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-11-25T15:48:41,982 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-11-25T15:48:41,985 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-11-25T15:48:41,987 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-11-25T15:48:41,989 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-11-25T15:48:41,991 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-11-25T15:48:41,993 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-11-25T15:48:41,994 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-11-25T15:48:41,996 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-11-25T15:48:41,998 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-11-25T15:48:42,000 creating build/lib/sequana/plots 2023-11-25T15:48:42,001 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-11-25T15:48:42,003 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-11-25T15:48:42,005 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-11-25T15:48:42,006 creating build/lib/sequana/cython 2023-11-25T15:48:42,007 copying sequana/cython/setup.py -> build/lib/sequana/cython 2023-11-25T15:48:42,009 copying sequana/cython/__init__.py -> build/lib/sequana/cython 2023-11-25T15:48:42,011 creating build/lib/sequana/modules_report 2023-11-25T15:48:42,012 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,014 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,016 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,018 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,020 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,022 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,025 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,028 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,030 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,032 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,034 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,036 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,038 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,040 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,042 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,044 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,046 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,048 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,051 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,053 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,055 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-11-25T15:48:42,058 creating build/lib/sequana/scripts/main 2023-11-25T15:48:42,059 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,061 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,063 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,064 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,066 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,068 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,070 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,071 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,073 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,075 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,077 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,079 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,081 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,083 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,084 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,086 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,088 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,090 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,091 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,093 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,095 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,097 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,098 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-11-25T15:48:42,100 creating build/lib/sequana/resources/testing 2023-11-25T15:48:42,101 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,103 creating build/lib/sequana/resources/canvas 2023-11-25T15:48:42,104 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-11-25T15:48:42,106 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-11-25T15:48:42,108 creating build/lib/sequana/resources/snpeff 2023-11-25T15:48:42,109 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-11-25T15:48:42,111 creating build/lib/sequana/resources/js 2023-11-25T15:48:42,112 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-11-25T15:48:42,114 creating build/lib/sequana/resources/templates 2023-11-25T15:48:42,115 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,117 creating build/lib/sequana/resources/css 2023-11-25T15:48:42,118 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-11-25T15:48:42,120 creating build/lib/sequana/resources/images 2023-11-25T15:48:42,121 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-11-25T15:48:42,122 creating build/lib/sequana/resources/data 2023-11-25T15:48:42,123 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-11-25T15:48:42,126 creating build/lib/sequana/resources/examples 2023-11-25T15:48:42,127 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-11-25T15:48:42,129 creating build/lib/sequana/resources/doc 2023-11-25T15:48:42,130 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-11-25T15:48:42,132 creating build/lib/sequana/resources/doc/rnaseq_0 2023-11-25T15:48:42,133 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-11-25T15:48:42,135 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-11-25T15:48:42,136 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-11-25T15:48:42,137 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:48:42,138 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:48:42,140 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:48:42,141 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:48:42,143 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:48:42,143 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:48:42,145 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:48:42,146 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:48:42,148 creating build/lib/sequana/rules/Pacbio 2023-11-25T15:48:42,149 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-11-25T15:48:42,151 creating build/lib/sequana/rules/picard-tools 2023-11-25T15:48:42,151 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-11-25T15:48:42,153 creating build/lib/sequana/rules/deeptools 2023-11-25T15:48:42,154 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-11-25T15:48:42,156 creating build/lib/sequana/rules/SnpEff 2023-11-25T15:48:42,157 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-11-25T15:48:42,159 creating build/lib/sequana/rules/idr 2023-11-25T15:48:42,160 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-11-25T15:48:42,162 creating build/lib/sequana/rules/codecs 2023-11-25T15:48:42,162 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-11-25T15:48:42,316 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-11-25T15:48:42,318 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-11-25T15:48:42,320 creating build/lib/sequana/rules/samtools_sort 2023-11-25T15:48:42,321 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-11-25T15:48:42,323 creating build/lib/sequana/rules/summary_pipeline 2023-11-25T15:48:42,324 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-11-25T15:48:42,327 creating build/lib/sequana/rules/DupRadar 2023-11-25T15:48:42,328 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-11-25T15:48:42,330 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-11-25T15:48:42,331 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-11-25T15:48:42,333 creating build/lib/sequana/rules/spikes_counting 2023-11-25T15:48:42,334 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-11-25T15:48:42,336 creating build/lib/sequana/rules/format_contigs 2023-11-25T15:48:42,337 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-11-25T15:48:42,339 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:48:42,340 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:48:42,342 creating build/lib/sequana/rules/fastq_sampling 2023-11-25T15:48:42,343 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-11-25T15:48:42,345 creating build/lib/sequana/rules/salmon_mapping 2023-11-25T15:48:42,346 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-11-25T15:48:42,348 creating build/lib/sequana/rules/spades_get_fastq 2023-11-25T15:48:42,349 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-11-25T15:48:42,351 creating build/lib/sequana/rules/igvtools 2023-11-25T15:48:42,352 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-11-25T15:48:42,354 creating build/lib/sequana/rules/prokka 2023-11-25T15:48:42,355 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-11-25T15:48:42,357 creating build/lib/sequana/rules/indel_realigner 2023-11-25T15:48:42,357 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-11-25T15:48:42,359 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-11-25T15:48:42,360 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-11-25T15:48:42,362 creating build/lib/sequana/rules/cutadapt 2023-11-25T15:48:42,363 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-11-25T15:48:42,365 creating build/lib/sequana/rules/bamCoverage 2023-11-25T15:48:42,366 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-11-25T15:48:42,368 creating build/lib/sequana/rules/bam_quality_filter 2023-11-25T15:48:42,369 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-11-25T15:48:42,371 creating build/lib/sequana/rules/bed_to_gff 2023-11-25T15:48:42,372 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-11-25T15:48:42,374 creating build/lib/sequana/rules/fastq_screen 2023-11-25T15:48:42,375 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-11-25T15:48:42,377 creating build/lib/sequana/rules/fastq_screen_report 2023-11-25T15:48:42,378 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-11-25T15:48:42,381 creating build/lib/sequana/rules/rnaseqc 2023-11-25T15:48:42,382 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-11-25T15:48:42,384 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:48:42,385 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:48:42,387 creating build/lib/sequana/rules/salmon_index 2023-11-25T15:48:42,388 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-11-25T15:48:42,390 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-11-25T15:48:42,391 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-11-25T15:48:42,393 creating build/lib/sequana/rules/pacbio_quality 2023-11-25T15:48:42,394 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-11-25T15:48:42,396 creating build/lib/sequana/rules/revcomp_rule 2023-11-25T15:48:42,397 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-11-25T15:48:42,399 creating build/lib/sequana/rules/kraken 2023-11-25T15:48:42,400 creating build/lib/sequana/rules/kraken/1.0 2023-11-25T15:48:42,401 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-11-25T15:48:42,403 creating build/lib/sequana/rules/kraken/2.0 2023-11-25T15:48:42,404 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-11-25T15:48:42,406 creating build/lib/sequana/rules/kraken/1.1 2023-11-25T15:48:42,407 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-11-25T15:48:42,410 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-11-25T15:48:42,411 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-11-25T15:48:42,413 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:48:42,413 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:48:42,415 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:48:42,416 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:48:42,418 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-11-25T15:48:42,419 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-11-25T15:48:42,421 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:48:42,422 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:48:42,424 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:48:42,425 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:48:42,427 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:48:42,427 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:48:42,429 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-11-25T15:48:42,430 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-11-25T15:48:42,432 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:48:42,433 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:48:42,435 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:48:42,436 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:48:42,438 creating build/lib/sequana/rules/idr/metrics_peaks 2023-11-25T15:48:42,439 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-11-25T15:48:42,441 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:48:42,442 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:48:42,445 creating build/lib/sequana/rules/idr/compute_idr 2023-11-25T15:48:42,446 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-11-25T15:48:42,448 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-11-25T15:48:42,449 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-11-25T15:48:42,451 creating build/lib/sequana/rules/idr/select_peaks 2023-11-25T15:48:42,452 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-11-25T15:48:42,454 creating build/lib/sequana/rules/idr/union_peaks 2023-11-25T15:48:42,455 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-11-25T15:48:42,457 creating build/lib/sequana/rules/idr/intersectionApproach 2023-11-25T15:48:42,458 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-11-25T15:48:42,460 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:48:42,461 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:48:42,463 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:48:42,464 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:48:42,466 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:48:42,467 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:48:42,469 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:48:42,469 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:48:42,471 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:48:42,472 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:48:42,474 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:48:42,475 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:48:42,477 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:48:42,477 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:48:42,479 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:48:42,480 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:48:42,482 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:48:42,483 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:48:42,485 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:48:42,486 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:48:42,488 creating build/lib/sequana/rules/SnpEff/snpeff 2023-11-25T15:48:42,489 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:48:42,490 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:48:42,492 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:48:42,493 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:48:42,495 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-11-25T15:48:42,495 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:48:42,496 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:48:42,498 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:48:42,499 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:48:42,502 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,504 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,506 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,508 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,510 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,512 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,515 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,517 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,519 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,521 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,523 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,525 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,536 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,544 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,546 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,548 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,550 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,552 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-11-25T15:48:42,559 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-11-25T15:48:42,562 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,565 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,568 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,572 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,573 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,576 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,580 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,582 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,589 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,591 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,599 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,602 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,604 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-11-25T15:48:42,607 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,609 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,611 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,614 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,615 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-11-25T15:48:42,618 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-11-25T15:48:42,620 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-11-25T15:48:42,623 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-11-25T15:48:42,625 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-11-25T15:48:42,629 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-11-25T15:48:42,631 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-11-25T15:48:42,634 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-11-25T15:48:42,637 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-11-25T15:48:42,639 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-11-25T15:48:42,642 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-11-25T15:48:42,644 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-11-25T15:48:42,646 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-11-25T15:48:42,649 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-11-25T15:48:42,653 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-11-25T15:48:42,655 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-11-25T15:48:42,662 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-11-25T15:48:42,672 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-11-25T15:48:42,676 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-11-25T15:48:42,678 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-11-25T15:48:42,680 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-11-25T15:48:42,724 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T15:48:42,725 !! 2023-11-25T15:48:42,726 ******************************************************************************** 2023-11-25T15:48:42,726 Please avoid running ``setup.py`` directly. 2023-11-25T15:48:42,727 Instead, use pypa/build, pypa/installer or other 2023-11-25T15:48:42,728 standards-based tools. 2023-11-25T15:48:42,729 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T15:48:42,729 ******************************************************************************** 2023-11-25T15:48:42,730 !! 2023-11-25T15:48:42,731 self.initialize_options() 2023-11-25T15:48:42,750 installing to build/bdist.linux-armv7l/wheel 2023-11-25T15:48:42,751 running install 2023-11-25T15:48:42,774 running install_lib 2023-11-25T15:48:42,798 creating build/bdist.linux-armv7l 2023-11-25T15:48:42,799 creating build/bdist.linux-armv7l/wheel 2023-11-25T15:48:42,801 creating build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,802 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,804 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,807 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,810 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,811 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,813 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,815 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,817 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,819 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,821 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,824 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,826 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,828 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:48:42,830 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,831 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,833 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,835 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,837 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,839 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,841 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,842 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:48:42,844 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,845 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,847 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,849 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,851 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,853 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,855 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,857 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,859 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,862 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,864 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,865 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,867 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,869 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:48:42,871 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,873 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,874 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,877 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,879 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,881 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,884 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,885 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,886 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,888 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,890 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,892 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,894 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,896 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,897 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,899 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,902 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,904 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,905 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,907 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,909 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,911 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,913 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,914 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,916 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,918 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,920 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,922 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,924 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,925 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:48:42,927 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:48:42,928 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,931 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,933 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,935 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,937 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,939 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,941 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,943 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,945 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,947 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,950 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,953 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,955 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,958 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,960 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,962 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,965 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:48:42,966 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:48:42,969 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:48:42,971 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:48:42,972 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,975 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,977 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:42,979 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-11-25T15:48:42,980 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,981 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,983 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,985 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,986 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,988 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,990 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,993 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,994 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,997 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:42,998 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,000 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,001 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,013 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,020 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,021 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,023 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,025 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,026 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,033 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:48:43,035 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:48:43,036 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:48:43,038 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:48:43,040 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:48:43,041 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:48:43,043 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:48:43,045 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,045 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,049 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,051 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,055 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,057 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,060 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,063 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,065 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,073 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,074 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,080 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,082 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,084 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,086 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:48:43,090 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,091 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,093 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,095 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,097 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,099 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,101 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:48:43,103 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,104 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,106 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,108 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,110 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,114 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,116 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:48:43,118 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,119 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,121 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,123 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,125 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,129 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:48:43,131 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,131 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,135 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,137 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,139 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,147 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,149 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,152 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,161 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,163 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:48:43,169 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:48:43,170 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:48:43,173 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:48:43,175 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:48:43,177 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:48:43,180 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-11-25T15:48:43,181 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-11-25T15:48:43,183 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:48:43,185 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:48:43,186 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:48:43,188 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:48:43,190 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:48:43,192 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:48:43,193 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:48:43,195 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:48:43,196 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-11-25T15:48:43,198 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-11-25T15:48:43,199 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-11-25T15:48:43,201 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-11-25T15:48:43,202 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-11-25T15:48:43,204 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,206 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,209 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:48:43,211 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-11-25T15:48:43,212 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-11-25T15:48:43,214 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-11-25T15:48:43,216 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-11-25T15:48:43,218 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-11-25T15:48:43,220 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-11-25T15:48:43,222 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-11-25T15:48:43,223 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-11-25T15:48:43,226 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-11-25T15:48:43,227 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-11-25T15:48:43,229 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-11-25T15:48:43,231 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-11-25T15:48:43,233 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-11-25T15:48:43,234 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-11-25T15:48:43,237 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:48:43,238 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:48:43,240 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:48:43,242 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-11-25T15:48:43,244 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-11-25T15:48:43,246 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-11-25T15:48:43,247 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-11-25T15:48:43,250 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-11-25T15:48:43,251 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-11-25T15:48:43,254 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-11-25T15:48:43,255 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-11-25T15:48:43,256 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-11-25T15:48:43,259 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-11-25T15:48:43,260 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-11-25T15:48:43,262 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-11-25T15:48:43,263 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-11-25T15:48:43,266 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-11-25T15:48:43,266 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-11-25T15:48:43,269 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-11-25T15:48:43,269 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-11-25T15:48:43,272 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-11-25T15:48:43,273 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-11-25T15:48:43,274 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-11-25T15:48:43,276 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:48:43,277 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:48:43,279 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:48:43,280 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:48:43,282 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-11-25T15:48:43,283 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-11-25T15:48:43,285 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-11-25T15:48:43,287 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:48:43,288 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:48:43,290 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-11-25T15:48:43,291 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-11-25T15:48:43,293 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-11-25T15:48:43,294 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-11-25T15:48:43,297 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-11-25T15:48:43,298 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-11-25T15:48:43,300 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-11-25T15:48:43,301 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-11-25T15:48:43,303 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-11-25T15:48:43,304 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-11-25T15:48:43,306 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-11-25T15:48:43,307 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-11-25T15:48:43,309 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-11-25T15:48:43,310 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-11-25T15:48:43,312 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-11-25T15:48:43,313 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-11-25T15:48:43,316 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-11-25T15:48:43,316 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-11-25T15:48:43,319 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-11-25T15:48:43,320 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:48:43,321 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:48:43,323 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:48:43,324 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:48:43,326 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-11-25T15:48:43,327 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-11-25T15:48:43,329 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:48:43,330 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:48:43,332 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-11-25T15:48:43,334 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:48:43,335 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:48:43,337 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-11-25T15:48:43,338 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-11-25T15:48:43,340 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-11-25T15:48:43,341 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-11-25T15:48:43,343 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-11-25T15:48:43,345 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-11-25T15:48:43,346 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:48:43,347 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:48:43,350 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:48:43,351 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:48:43,354 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:48:43,355 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:48:43,358 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-11-25T15:48:43,359 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:48:43,360 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:48:43,363 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:48:43,364 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:48:43,366 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-11-25T15:48:43,369 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-11-25T15:48:43,370 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-11-25T15:48:43,373 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-11-25T15:48:43,374 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-11-25T15:48:43,376 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-11-25T15:48:43,378 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:48:43,379 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:48:43,383 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-11-25T15:48:43,384 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-11-25T15:48:43,387 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-11-25T15:48:43,388 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-11-25T15:48:43,392 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-11-25T15:48:43,393 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-11-25T15:48:43,396 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-11-25T15:48:43,397 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-11-25T15:48:43,399 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-11-25T15:48:43,401 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-11-25T15:48:43,403 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-11-25T15:48:43,406 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-11-25T15:48:43,407 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:48:43,408 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:48:43,411 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:48:43,412 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:48:43,415 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:48:43,416 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:48:43,419 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:48:43,420 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:48:43,423 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:48:43,424 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:48:43,427 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:48:43,428 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:48:43,431 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:48:43,432 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:48:43,435 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:48:43,437 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:48:43,439 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:48:43,441 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:48:43,444 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:48:43,445 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:48:43,447 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-11-25T15:48:43,449 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:48:43,451 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-11-25T15:48:43,452 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-11-25T15:48:43,454 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,456 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,458 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,461 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,463 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,465 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,467 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,469 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,472 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,474 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,477 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,480 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,482 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,483 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,485 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,487 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,489 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,491 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,493 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,495 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,497 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,499 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,500 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,502 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,504 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,507 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,509 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,511 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,513 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,515 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,516 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,518 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:48:43,520 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,522 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,525 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,526 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,528 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,531 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,533 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,535 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,537 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,539 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,542 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,544 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,546 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,549 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,550 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,553 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,556 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:48:43,557 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:48:43,559 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:48:43,561 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:48:43,562 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,564 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,566 copying build/lib/sequana/G4hunter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,568 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,570 creating build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:48:43,571 copying build/lib/sequana/cython/setup.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:48:43,573 copying build/lib/sequana/cython/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:48:43,574 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,576 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,578 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,580 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,583 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,585 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,587 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,589 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,590 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,592 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,594 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,596 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,599 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,601 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,604 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,606 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,608 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,610 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,612 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,614 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,617 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,619 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,621 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,623 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,625 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,628 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,630 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,632 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,634 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:48:43,636 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,638 copying build/lib/sequana/mpileup.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,640 copying build/lib/sequana/annotation.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,642 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,644 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,645 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:48:43,647 running install_egg_info 2023-11-25T15:48:43,708 running egg_info 2023-11-25T15:48:43,733 writing sequana.egg-info/PKG-INFO 2023-11-25T15:48:43,743 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-11-25T15:48:43,745 writing entry points to sequana.egg-info/entry_points.txt 2023-11-25T15:48:43,750 writing requirements to sequana.egg-info/requires.txt 2023-11-25T15:48:43,751 writing top-level names to sequana.egg-info/top_level.txt 2023-11-25T15:48:43,931 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-11-25T15:48:43,941 reading manifest template 'MANIFEST.in' 2023-11-25T15:48:43,944 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-11-25T15:48:43,946 warning: no previously-included files matching '*pyc' found under directory '*' 2023-11-25T15:48:44,364 warning: no files found matching 'test/requirements*txt' 2023-11-25T15:48:44,366 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-11-25T15:48:44,367 warning: no previously-included files matching '*' found under directory 'test' 2023-11-25T15:48:44,368 warning: no previously-included files matching '*' found under directory 'doc' 2023-11-25T15:48:44,369 warning: no previously-included files found matching 'sequana/rm2.py' 2023-11-25T15:48:44,370 adding license file 'LICENSE' 2023-11-25T15:48:44,385 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-11-25T15:48:44,387 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.16.0-py3.11.egg-info 2023-11-25T15:48:44,402 running install_scripts 2023-11-25T15:48:44,431 creating build/bdist.linux-armv7l/wheel/sequana-0.16.0.dist-info/WHEEL 2023-11-25T15:48:44,434 creating '/tmp/pip-wheel-sktg1sdu/sequana-0.16.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T15:48:44,436 adding 'sequana/G4hunter.py' 2023-11-25T15:48:44,438 adding 'sequana/__init__.py' 2023-11-25T15:48:44,439 adding 'sequana/annotation.py' 2023-11-25T15:48:44,441 adding 'sequana/assembly.py' 2023-11-25T15:48:44,449 adding 'sequana/bamtools.py' 2023-11-25T15:48:44,451 adding 'sequana/bed.py' 2023-11-25T15:48:44,460 adding 'sequana/bedtools.py' 2023-11-25T15:48:44,462 adding 'sequana/canu_scanner.py' 2023-11-25T15:48:44,464 adding 'sequana/cigar.py' 2023-11-25T15:48:44,465 adding 'sequana/cnv.py' 2023-11-25T15:48:44,466 adding 'sequana/codon.py' 2023-11-25T15:48:44,469 adding 'sequana/compare.py' 2023-11-25T15:48:44,471 adding 'sequana/contigs.py' 2023-11-25T15:48:44,473 adding 'sequana/coverage.py' 2023-11-25T15:48:44,474 adding 'sequana/cpg_islands.py' 2023-11-25T15:48:44,475 adding 'sequana/criteria.py' 2023-11-25T15:48:44,478 adding 'sequana/databases.py' 2023-11-25T15:48:44,479 adding 'sequana/datatools.py' 2023-11-25T15:48:44,481 adding 'sequana/demultiplex.py' 2023-11-25T15:48:44,482 adding 'sequana/errors.py' 2023-11-25T15:48:44,484 adding 'sequana/fasta.py' 2023-11-25T15:48:44,486 adding 'sequana/fasta_gff_correction.py' 2023-11-25T15:48:44,491 adding 'sequana/fastq.py' 2023-11-25T15:48:44,493 adding 'sequana/fastqc.py' 2023-11-25T15:48:44,495 adding 'sequana/featurecounts.py' 2023-11-25T15:48:44,497 adding 'sequana/find_motif.py' 2023-11-25T15:48:44,499 adding 'sequana/freebayes_bcf_filter.py' 2023-11-25T15:48:44,501 adding 'sequana/freebayes_vcf_filter.py' 2023-11-25T15:48:44,502 adding 'sequana/frip.py' 2023-11-25T15:48:44,504 adding 'sequana/genbank.py' 2023-11-25T15:48:44,507 adding 'sequana/gff3.py' 2023-11-25T15:48:44,508 adding 'sequana/gtf_fixer.py' 2023-11-25T15:48:44,510 adding 'sequana/homer.py' 2023-11-25T15:48:44,511 adding 'sequana/idr.py' 2023-11-25T15:48:44,513 adding 'sequana/iem.py' 2023-11-25T15:48:44,516 adding 'sequana/isoseq.py' 2023-11-25T15:48:44,518 adding 'sequana/itol.py' 2023-11-25T15:48:44,519 adding 'sequana/iuapc.py' 2023-11-25T15:48:44,521 adding 'sequana/kegg.py' 2023-11-25T15:48:44,522 adding 'sequana/kmer.py' 2023-11-25T15:48:44,523 adding 'sequana/krona.py' 2023-11-25T15:48:44,525 adding 'sequana/laa.py' 2023-11-25T15:48:44,527 adding 'sequana/lazy.py' 2023-11-25T15:48:44,532 adding 'sequana/lazyimports.py' 2023-11-25T15:48:44,533 adding 'sequana/macs3.py' 2023-11-25T15:48:44,535 adding 'sequana/mgi.py' 2023-11-25T15:48:44,536 adding 'sequana/mh.py' 2023-11-25T15:48:44,538 adding 'sequana/misc.py' 2023-11-25T15:48:44,540 adding 'sequana/mixture.py' 2023-11-25T15:48:44,542 adding 'sequana/mpileup.py' 2023-11-25T15:48:44,546 adding 'sequana/pacbio.py' 2023-11-25T15:48:44,548 adding 'sequana/pacbio_amplicon.py' 2023-11-25T15:48:44,551 adding 'sequana/phantom.py' 2023-11-25T15:48:44,553 adding 'sequana/phred.py' 2023-11-25T15:48:44,554 adding 'sequana/protein.py' 2023-11-25T15:48:44,556 adding 'sequana/ribodesigner.py' 2023-11-25T15:48:44,562 adding 'sequana/rnadiff.py' 2023-11-25T15:48:44,564 adding 'sequana/running_median.py' 2023-11-25T15:48:44,566 adding 'sequana/salmon.py' 2023-11-25T15:48:44,570 adding 'sequana/sequence.py' 2023-11-25T15:48:44,571 adding 'sequana/sniffer.py' 2023-11-25T15:48:44,573 adding 'sequana/snpeff.py' 2023-11-25T15:48:44,574 adding 'sequana/stats.py' 2023-11-25T15:48:44,576 adding 'sequana/summary.py' 2023-11-25T15:48:44,578 adding 'sequana/taxonomy.py' 2023-11-25T15:48:44,581 adding 'sequana/tools.py' 2023-11-25T15:48:44,583 adding 'sequana/trf.py' 2023-11-25T15:48:44,585 adding 'sequana/vcf_filter.py' 2023-11-25T15:48:44,587 adding 'sequana/vcftools.py' 2023-11-25T15:48:44,589 adding 'sequana/vst.py' 2023-11-25T15:48:44,591 adding 'sequana/cython/__init__.py' 2023-11-25T15:48:44,592 adding 'sequana/cython/setup.py' 2023-11-25T15:48:44,593 adding 'sequana/enrichment/__init__.py' 2023-11-25T15:48:44,595 adding 'sequana/enrichment/gsea.py' 2023-11-25T15:48:44,598 adding 'sequana/enrichment/kegg.py' 2023-11-25T15:48:44,600 adding 'sequana/enrichment/mart.py' 2023-11-25T15:48:44,601 adding 'sequana/enrichment/ontology.py' 2023-11-25T15:48:44,603 adding 'sequana/enrichment/panther.py' 2023-11-25T15:48:44,605 adding 'sequana/enrichment/plot_go_terms.py' 2023-11-25T15:48:44,607 adding 'sequana/enrichment/quickgo.py' 2023-11-25T15:48:44,609 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-11-25T15:48:44,611 adding 'sequana/kraken/__init__.py' 2023-11-25T15:48:44,617 adding 'sequana/kraken/analysis.py' 2023-11-25T15:48:44,619 adding 'sequana/kraken/multikraken.py' 2023-11-25T15:48:44,621 adding 'sequana/modules_report/__init__.py' 2023-11-25T15:48:44,622 adding 'sequana/modules_report/bamqc.py' 2023-11-25T15:48:44,624 adding 'sequana/modules_report/base_module.py' 2023-11-25T15:48:44,626 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-11-25T15:48:44,629 adding 'sequana/modules_report/coverage.py' 2023-11-25T15:48:44,632 adding 'sequana/modules_report/cutadapt.py' 2023-11-25T15:48:44,634 adding 'sequana/modules_report/fastq_stats.py' 2023-11-25T15:48:44,635 adding 'sequana/modules_report/fastqc.py' 2023-11-25T15:48:44,636 adding 'sequana/modules_report/joint_calling.py' 2023-11-25T15:48:44,638 adding 'sequana/modules_report/kegg_enrichment.py' 2023-11-25T15:48:44,639 adding 'sequana/modules_report/kraken.py' 2023-11-25T15:48:44,641 adding 'sequana/modules_report/multi_summary.py' 2023-11-25T15:48:44,643 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-11-25T15:48:44,645 adding 'sequana/modules_report/panther_enrichment.py' 2023-11-25T15:48:44,646 adding 'sequana/modules_report/phix.py' 2023-11-25T15:48:44,647 adding 'sequana/modules_report/quast.py' 2023-11-25T15:48:44,650 adding 'sequana/modules_report/rnadiff.py' 2023-11-25T15:48:44,652 adding 'sequana/modules_report/summary.py' 2023-11-25T15:48:44,653 adding 'sequana/modules_report/trf.py' 2023-11-25T15:48:44,655 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-11-25T15:48:44,656 adding 'sequana/modules_report/variant_calling.py' 2023-11-25T15:48:44,658 adding 'sequana/multiqc/__init__.py' 2023-11-25T15:48:44,659 adding 'sequana/multiqc/bamtools_stats.py' 2023-11-25T15:48:44,661 adding 'sequana/multiqc/config.py' 2023-11-25T15:48:44,662 adding 'sequana/multiqc/coverage.py' 2023-11-25T15:48:44,664 adding 'sequana/multiqc/isoseq.py' 2023-11-25T15:48:44,666 adding 'sequana/multiqc/isoseq_qc.py' 2023-11-25T15:48:44,668 adding 'sequana/multiqc/kraken.py' 2023-11-25T15:48:44,669 adding 'sequana/multiqc/laa.py' 2023-11-25T15:48:44,671 adding 'sequana/multiqc/multiqc_config.yaml' 2023-11-25T15:48:44,672 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-11-25T15:48:44,674 adding 'sequana/multiqc/pacbio_qc.py' 2023-11-25T15:48:44,676 adding 'sequana/multiqc/plots.py' 2023-11-25T15:48:44,677 adding 'sequana/multiqc/quality_control.py' 2023-11-25T15:48:44,679 adding 'sequana/plots/__init__.py' 2023-11-25T15:48:44,680 adding 'sequana/plots/canvasjs_base.py' 2023-11-25T15:48:44,682 adding 'sequana/plots/canvasjs_linegraph.py' 2023-11-25T15:48:44,683 adding 'sequana/resources/__init__.py' 2023-11-25T15:48:44,685 adding 'sequana/resources/canvas/__init__.py' 2023-11-25T15:48:44,686 adding 'sequana/resources/canvas/bar.py' 2023-11-25T15:48:44,687 adding 'sequana/resources/css/__init__.py' 2023-11-25T15:48:44,697 adding 'sequana/resources/css/bootstrap.min.css' 2023-11-25T15:48:44,699 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-11-25T15:48:44,701 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-11-25T15:48:44,702 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-11-25T15:48:44,703 adding 'sequana/resources/css/report.css' 2023-11-25T15:48:44,716 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-11-25T15:48:44,730 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-11-25T15:48:44,732 adding 'sequana/resources/data/README.rst' 2023-11-25T15:48:44,733 adding 'sequana/resources/data/__init__.py' 2023-11-25T15:48:44,791 adding 'sequana/resources/data/kegg.csv' 2023-11-25T15:48:44,801 adding 'sequana/resources/data/measles.fa' 2023-11-25T15:48:44,802 adding 'sequana/resources/data/panther.csv' 2023-11-25T15:48:44,805 adding 'sequana/resources/data/phiX174.fa' 2023-11-25T15:48:44,864 adding 'sequana/resources/data/virus.bed' 2023-11-25T15:48:44,867 adding 'sequana/resources/doc/__init__.py' 2023-11-25T15:48:44,868 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-11-25T15:48:44,869 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-11-25T15:48:44,870 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-11-25T15:48:44,872 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-11-25T15:48:44,873 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-11-25T15:48:44,874 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-11-25T15:48:44,876 adding 'sequana/resources/examples/README.rst' 2023-11-25T15:48:44,877 adding 'sequana/resources/examples/__init__.py' 2023-11-25T15:48:44,879 adding 'sequana/resources/examples/test.fastq.gz' 2023-11-25T15:48:44,881 adding 'sequana/resources/examples/test_kraken.out' 2023-11-25T15:48:44,886 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-11-25T15:48:44,887 adding 'sequana/resources/images/__init__.py' 2023-11-25T15:48:44,896 adding 'sequana/resources/images/logo_256x256.png' 2023-11-25T15:48:44,897 adding 'sequana/resources/images/no_data.jpg' 2023-11-25T15:48:44,899 adding 'sequana/resources/images/no_data.png' 2023-11-25T15:48:44,900 adding 'sequana/resources/js/__init__.py' 2023-11-25T15:48:44,904 adding 'sequana/resources/js/bootstrap.min.js' 2023-11-25T15:48:44,907 adding 'sequana/resources/js/buttons.html5.min.js' 2023-11-25T15:48:44,908 adding 'sequana/resources/js/buttons.print.min.js' 2023-11-25T15:48:44,930 adding 'sequana/resources/js/canvasjs.min.js' 2023-11-25T15:48:44,934 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-11-25T15:48:44,974 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-11-25T15:48:44,987 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-11-25T15:48:45,000 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-11-25T15:48:45,012 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-11-25T15:48:45,024 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-11-25T15:48:45,026 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-11-25T15:48:45,027 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-11-25T15:48:45,029 adding 'sequana/resources/js/papaparse.min.js' 2023-11-25T15:48:45,031 adding 'sequana/resources/snpeff/__init__.py' 2023-11-25T15:48:45,032 adding 'sequana/resources/snpeff/snpEff.config' 2023-11-25T15:48:45,034 adding 'sequana/resources/templates/__init__.py' 2023-11-25T15:48:45,035 adding 'sequana/resources/templates/base.html' 2023-11-25T15:48:45,036 adding 'sequana/resources/templates/joint_calling.html' 2023-11-25T15:48:45,038 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-11-25T15:48:45,039 adding 'sequana/resources/templates/standard.html' 2023-11-25T15:48:45,040 adding 'sequana/resources/templates/vcf_diff.html' 2023-11-25T15:48:45,042 adding 'sequana/resources/testing/README.rst' 2023-11-25T15:48:45,043 adding 'sequana/resources/testing/__init__.py' 2023-11-25T15:48:45,044 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-11-25T15:48:45,052 adding 'sequana/resources/testing/test.fasta' 2023-11-25T15:48:45,064 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-11-25T15:48:45,068 adding 'sequana/resources/testing/test_blast_local.xml' 2023-11-25T15:48:45,100 adding 'sequana/resources/testing/test_coverage.csv' 2023-11-25T15:48:45,103 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-11-25T15:48:45,104 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-11-25T15:48:45,105 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-11-25T15:48:45,106 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-11-25T15:48:45,107 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-11-25T15:48:45,109 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-11-25T15:48:45,110 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-11-25T15:48:45,111 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-11-25T15:48:45,112 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-11-25T15:48:45,113 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-11-25T15:48:45,332 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-11-25T15:48:45,337 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-11-25T15:48:45,339 adding 'sequana/rules/README.rst' 2023-11-25T15:48:45,340 adding 'sequana/rules/__init__.py' 2023-11-25T15:48:45,341 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-11-25T15:48:45,342 adding 'sequana/rules/Pacbio/__init__.py' 2023-11-25T15:48:45,343 adding 'sequana/rules/SnpEff/__init__.py' 2023-11-25T15:48:45,345 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-11-25T15:48:45,346 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-11-25T15:48:45,348 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-11-25T15:48:45,350 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-11-25T15:48:45,351 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-11-25T15:48:45,352 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-11-25T15:48:45,354 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-11-25T15:48:45,356 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-11-25T15:48:45,357 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-11-25T15:48:45,358 adding 'sequana/rules/codecs/__init__.py' 2023-11-25T15:48:45,360 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-11-25T15:48:45,361 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-11-25T15:48:45,362 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-11-25T15:48:45,364 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-11-25T15:48:45,365 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-11-25T15:48:45,367 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-11-25T15:48:45,368 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-11-25T15:48:45,369 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-11-25T15:48:45,371 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-11-25T15:48:45,372 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-11-25T15:48:45,374 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-11-25T15:48:45,375 adding 'sequana/rules/deeptools/__init__.py' 2023-11-25T15:48:45,377 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-11-25T15:48:45,378 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-11-25T15:48:45,380 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-11-25T15:48:45,381 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-11-25T15:48:45,383 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-11-25T15:48:45,384 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-11-25T15:48:45,386 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-11-25T15:48:45,387 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-11-25T15:48:45,389 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-11-25T15:48:45,390 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-11-25T15:48:45,392 adding 'sequana/rules/idr/__init__.py' 2023-11-25T15:48:45,393 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-11-25T15:48:45,395 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-11-25T15:48:45,396 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-11-25T15:48:45,398 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-11-25T15:48:45,400 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-11-25T15:48:45,401 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-11-25T15:48:45,403 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-11-25T15:48:45,405 adding 'sequana/rules/igvtools/igvtools.rules' 2023-11-25T15:48:45,406 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-11-25T15:48:45,408 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-11-25T15:48:45,409 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-11-25T15:48:45,411 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-11-25T15:48:45,412 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-11-25T15:48:45,414 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-11-25T15:48:45,415 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-11-25T15:48:45,417 adding 'sequana/rules/picard-tools/__init__.py' 2023-11-25T15:48:45,418 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-11-25T15:48:45,419 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-11-25T15:48:45,421 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-11-25T15:48:45,422 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-11-25T15:48:45,424 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-11-25T15:48:45,426 adding 'sequana/rules/prokka/prokka.rules' 2023-11-25T15:48:45,427 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-11-25T15:48:45,429 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-11-25T15:48:45,430 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-11-25T15:48:45,432 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-11-25T15:48:45,433 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-11-25T15:48:45,434 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-11-25T15:48:45,436 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-11-25T15:48:45,437 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-11-25T15:48:45,439 adding 'sequana/scripts/__init__.py' 2023-11-25T15:48:45,440 adding 'sequana/scripts/common.py' 2023-11-25T15:48:45,442 adding 'sequana/scripts/coverage.py' 2023-11-25T15:48:45,444 adding 'sequana/scripts/substractor.py' 2023-11-25T15:48:45,446 adding 'sequana/scripts/taxonomy.py' 2023-11-25T15:48:45,447 adding 'sequana/scripts/main/__init__.py' 2023-11-25T15:48:45,449 adding 'sequana/scripts/main/biomart.py' 2023-11-25T15:48:45,450 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-11-25T15:48:45,452 adding 'sequana/scripts/main/enrichment_panther.py' 2023-11-25T15:48:45,453 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-11-25T15:48:45,455 adding 'sequana/scripts/main/fasta.py' 2023-11-25T15:48:45,456 adding 'sequana/scripts/main/fastq.py' 2023-11-25T15:48:45,457 adding 'sequana/scripts/main/feature_count.py' 2023-11-25T15:48:45,459 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-11-25T15:48:45,460 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-11-25T15:48:45,461 adding 'sequana/scripts/main/gtf_fixer.py' 2023-11-25T15:48:45,463 adding 'sequana/scripts/main/lane_merging.py' 2023-11-25T15:48:45,464 adding 'sequana/scripts/main/main.py' 2023-11-25T15:48:45,465 adding 'sequana/scripts/main/mapping.py' 2023-11-25T15:48:45,467 adding 'sequana/scripts/main/ribodesigner.py' 2023-11-25T15:48:45,469 adding 'sequana/scripts/main/rnadiff.py' 2023-11-25T15:48:45,471 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-11-25T15:48:45,472 adding 'sequana/scripts/main/salmon.py' 2023-11-25T15:48:45,473 adding 'sequana/scripts/main/samplesheet.py' 2023-11-25T15:48:45,474 adding 'sequana/scripts/main/summary.py' 2023-11-25T15:48:45,476 adding 'sequana/scripts/main/taxonomy.py' 2023-11-25T15:48:45,477 adding 'sequana/scripts/main/utils.py' 2023-11-25T15:48:45,478 adding 'sequana/scripts/main/variants_comparison.py' 2023-11-25T15:48:45,480 adding 'sequana/utils/__init__.py' 2023-11-25T15:48:45,481 adding 'sequana/utils/config.py' 2023-11-25T15:48:45,483 adding 'sequana/utils/datatables_js.py' 2023-11-25T15:48:45,485 adding 'sequana/utils/df2html.py' 2023-11-25T15:48:45,486 adding 'sequana/utils/pandas.py' 2023-11-25T15:48:45,487 adding 'sequana/utils/singleton.py' 2023-11-25T15:48:45,488 adding 'sequana/utils/tree.py' 2023-11-25T15:48:45,490 adding 'sequana/viz/__init__.py' 2023-11-25T15:48:45,491 adding 'sequana/viz/anova.py' 2023-11-25T15:48:45,493 adding 'sequana/viz/boxplot.py' 2023-11-25T15:48:45,494 adding 'sequana/viz/clusterisation.py' 2023-11-25T15:48:45,495 adding 'sequana/viz/core.py' 2023-11-25T15:48:45,497 adding 'sequana/viz/corrplot.py' 2023-11-25T15:48:45,499 adding 'sequana/viz/dendogram.py' 2023-11-25T15:48:45,501 adding 'sequana/viz/heatmap.py' 2023-11-25T15:48:45,503 adding 'sequana/viz/hinton.py' 2023-11-25T15:48:45,504 adding 'sequana/viz/hist2d.py' 2023-11-25T15:48:45,505 adding 'sequana/viz/imshow.py' 2023-11-25T15:48:45,507 adding 'sequana/viz/isomap.py' 2023-11-25T15:48:45,508 adding 'sequana/viz/linkage.py' 2023-11-25T15:48:45,509 adding 'sequana/viz/mds.py' 2023-11-25T15:48:45,511 adding 'sequana/viz/pca.py' 2023-11-25T15:48:45,512 adding 'sequana/viz/plotly.py' 2023-11-25T15:48:45,513 adding 'sequana/viz/scatter.py' 2023-11-25T15:48:45,515 adding 'sequana/viz/venn.py' 2023-11-25T15:48:45,516 adding 'sequana/viz/volcano.py' 2023-11-25T15:48:45,518 adding 'sequana-0.16.0.dist-info/LICENSE' 2023-11-25T15:48:45,521 adding 'sequana-0.16.0.dist-info/METADATA' 2023-11-25T15:48:45,522 adding 'sequana-0.16.0.dist-info/WHEEL' 2023-11-25T15:48:45,523 adding 'sequana-0.16.0.dist-info/entry_points.txt' 2023-11-25T15:48:45,523 adding 'sequana-0.16.0.dist-info/top_level.txt' 2023-11-25T15:48:45,528 adding 'sequana-0.16.0.dist-info/RECORD' 2023-11-25T15:48:45,552 removing build/bdist.linux-armv7l/wheel 2023-11-25T15:48:45,758 Building wheel for sequana (setup.py): finished with status 'done' 2023-11-25T15:48:45,778 Created wheel for sequana: filename=sequana-0.16.0-py3-none-any.whl size=1771675 sha256=fe20009ab0e453ba9dfd4ff13d798907e137b3a20cb46ab88dcaf188c4118ae9 2023-11-25T15:48:45,780 Stored in directory: /tmp/pip-ephem-wheel-cache-3fzs7ec8/wheels/1f/7c/f2/ef4f31d110cc731dcc273dceb6126034e5a45c4d8137607ea9 2023-11-25T15:48:45,804 Successfully built sequana 2023-11-25T15:48:45,847 Removed build tracker: '/tmp/pip-build-tracker-1vme0n40'