2023-11-25T15:52:38,869 Created temporary directory: /tmp/pip-build-tracker-d0cjzanz 2023-11-25T15:52:38,870 Initialized build tracking at /tmp/pip-build-tracker-d0cjzanz 2023-11-25T15:52:38,871 Created build tracker: /tmp/pip-build-tracker-d0cjzanz 2023-11-25T15:52:38,871 Entered build tracker: /tmp/pip-build-tracker-d0cjzanz 2023-11-25T15:52:38,873 Created temporary directory: /tmp/pip-wheel-_40r3i_d 2023-11-25T15:52:38,876 Created temporary directory: /tmp/pip-ephem-wheel-cache-9yb1wpti 2023-11-25T15:52:38,899 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-25T15:52:38,903 2 location(s) to search for versions of sequana: 2023-11-25T15:52:38,903 * https://pypi.org/simple/sequana/ 2023-11-25T15:52:38,903 * https://www.piwheels.org/simple/sequana/ 2023-11-25T15:52:38,903 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-11-25T15:52:38,904 Getting page https://pypi.org/simple/sequana/ 2023-11-25T15:52:38,906 Found index url https://pypi.org/simple/ 2023-11-25T15:52:39,063 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-11-25T15:52:39,078 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-11-25T15:52:39,079 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-11-25T15:52:39,080 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-11-25T15:52:39,080 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.1 2023-11-25T15:52:39,081 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.2 2023-11-25T15:52:39,082 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.4 2023-11-25T15:52:39,083 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.5 2023-11-25T15:52:39,083 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.6 2023-11-25T15:52:39,084 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.7 2023-11-25T15:52:39,085 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.8 2023-11-25T15:52:39,085 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.9 2023-11-25T15:52:39,086 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.10 2023-11-25T15:52:39,087 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.11 2023-11-25T15:52:39,087 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.12 2023-11-25T15:52:39,088 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.13 2023-11-25T15:52:39,089 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.14 2023-11-25T15:52:39,090 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.15 2023-11-25T15:52:39,091 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.16 2023-11-25T15:52:39,091 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2023-11-25T15:52:39,092 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.18 2023-11-25T15:52:39,092 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.19 2023-11-25T15:52:39,093 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2023-11-25T15:52:39,094 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2023-11-25T15:52:39,094 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2023-11-25T15:52:39,095 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2023-11-25T15:52:39,095 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2023-11-25T15:52:39,096 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2023-11-25T15:52:39,097 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2023-11-25T15:52:39,097 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-11-25T15:52:39,098 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-11-25T15:52:39,099 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-11-25T15:52:39,100 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-11-25T15:52:39,100 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2023-11-25T15:52:39,101 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2023-11-25T15:52:39,102 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2023-11-25T15:52:39,102 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2023-11-25T15:52:39,103 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2023-11-25T15:52:39,104 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2023-11-25T15:52:39,104 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2023-11-25T15:52:39,105 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2023-11-25T15:52:39,105 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2023-11-25T15:52:39,106 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2023-11-25T15:52:39,107 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2023-11-25T15:52:39,107 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2023-11-25T15:52:39,108 Found link https://files.pythonhosted.org/packages/7c/c2/14a70eddbfcf45948d4bd36b1ace50f002e1e09fdc31b91d805bff8cdded/sequana-0.8.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.1 2023-11-25T15:52:39,109 Found link https://files.pythonhosted.org/packages/00/3b/846d0b8478bfbb60343377e5d0c2209add600da5c5d66e6348d465c1a8c4/sequana-0.8.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.2 2023-11-25T15:52:39,109 Found link https://files.pythonhosted.org/packages/bf/03/10d3d118833a6577ae01c789395358cc828e9a0c6ebeeeac0150cc243513/sequana-0.8.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.3 2023-11-25T15:52:39,110 Found link https://files.pythonhosted.org/packages/8d/c7/f64832ee59d86715a6abcb2e057d22c9519b4528500adaa2d0de8b8e4699/sequana-0.8.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.4 2023-11-25T15:52:39,110 Found link https://files.pythonhosted.org/packages/16/df/d22d28b026a78415f80e1afbc4d51fb6d7d32ace24bc792a7da93b8c62ef/sequana-0.8.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.5 2023-11-25T15:52:39,111 Found link https://files.pythonhosted.org/packages/a3/57/de2edd477c0ddf4c67ef68a475996bb071bf0ead4a6791849cea0c92ff25/sequana-0.8.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.6 2023-11-25T15:52:39,112 Found link https://files.pythonhosted.org/packages/dc/f1/388c45faac62457e6aede3478ba7b83291df8667c01159a9d62c3690f9ed/sequana-0.9.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.9.0 2023-11-25T15:52:39,112 Found link https://files.pythonhosted.org/packages/d1/60/4436fb43f4658c092b6b07b7b58546fbaf9c6f1bb8361baef075cda4535b/sequana-0.9.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.9.1 2023-11-25T15:52:39,113 Found link 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https://files.pythonhosted.org/packages/4f/9f/8802f849199c88d3f52625b9792bbb38e91dc59d6586c6b784f2c8352019/sequana-0.15.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.0 2023-11-25T15:52:39,131 Found link https://files.pythonhosted.org/packages/bd/1a/5efc8a202063ba6f1dfc30eb8440e434a1d91aa0e0434c8d9cc735db5c1c/sequana-0.15.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.1 2023-11-25T15:52:39,131 Found link https://files.pythonhosted.org/packages/cf/49/e643ec7dcaf9e6e963126a186f1d042ca416f308d820e11fefd27518a5b5/sequana-0.15.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.2 2023-11-25T15:52:39,132 Found link https://files.pythonhosted.org/packages/96/27/fc84fafe641b0990a8097ae84f0d835634c802a7051dc52744431a06a39e/sequana-0.15.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.3 2023-11-25T15:52:39,133 Found link 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2023-11-25T15:52:39,372 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-11-25T15:52:39,373 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-11-25T15:52:39,403 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-11-25T15:52:39,423 Collecting sequana==0.16.1 2023-11-25T15:52:39,425 Created temporary directory: /tmp/pip-unpack-0mat9he9 2023-11-25T15:52:39,651 Downloading sequana-0.16.1.tar.gz (1.6 MB) 2023-11-25T15:52:40,654 Added sequana==0.16.1 from https://files.pythonhosted.org/packages/74/79/fdc25c74b88dd1eb9577d6c892f4a19a7ceeaad2ee9327fcd99e24ffb347/sequana-0.16.1.tar.gz to build tracker '/tmp/pip-build-tracker-d0cjzanz' 2023-11-25T15:52:40,656 Running setup.py (path:/tmp/pip-wheel-_40r3i_d/sequana_63116c0f556842afb2627e4e75492ee8/setup.py) egg_info for package sequana 2023-11-25T15:52:40,657 Created temporary directory: /tmp/pip-pip-egg-info-rb3mid02 2023-11-25T15:52:40,658 Preparing metadata (setup.py): started 2023-11-25T15:52:40,659 Running command python setup.py egg_info 2023-11-25T15:52:42,284 running egg_info 2023-11-25T15:52:42,285 creating /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info 2023-11-25T15:52:42,310 writing /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/PKG-INFO 2023-11-25T15:52:42,321 writing dependency_links to /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/dependency_links.txt 2023-11-25T15:52:42,323 writing entry points to /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/entry_points.txt 2023-11-25T15:52:42,328 writing requirements to /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/requires.txt 2023-11-25T15:52:42,329 writing top-level names to /tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/top_level.txt 2023-11-25T15:52:42,330 writing manifest file '/tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/SOURCES.txt' 2023-11-25T15:52:42,587 reading manifest file '/tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/SOURCES.txt' 2023-11-25T15:52:42,589 reading manifest template 'MANIFEST.in' 2023-11-25T15:52:42,591 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-11-25T15:52:42,593 warning: no previously-included files matching '*pyc' found under directory '*' 2023-11-25T15:52:42,727 warning: no files found matching 'test/requirements*txt' 2023-11-25T15:52:42,729 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-11-25T15:52:42,730 warning: no previously-included files matching '*' found under directory 'test' 2023-11-25T15:52:42,731 warning: no previously-included files matching '*' found under directory 'doc' 2023-11-25T15:52:42,731 warning: no previously-included files found matching 'sequana/rm2.py' 2023-11-25T15:52:42,732 adding license file 'LICENSE' 2023-11-25T15:52:42,743 writing manifest file '/tmp/pip-pip-egg-info-rb3mid02/sequana.egg-info/SOURCES.txt' 2023-11-25T15:52:42,858 Preparing metadata (setup.py): finished with status 'done' 2023-11-25T15:52:42,862 Source in /tmp/pip-wheel-_40r3i_d/sequana_63116c0f556842afb2627e4e75492ee8 has version 0.16.1, which satisfies requirement sequana==0.16.1 from https://files.pythonhosted.org/packages/74/79/fdc25c74b88dd1eb9577d6c892f4a19a7ceeaad2ee9327fcd99e24ffb347/sequana-0.16.1.tar.gz 2023-11-25T15:52:42,863 Removed sequana==0.16.1 from https://files.pythonhosted.org/packages/74/79/fdc25c74b88dd1eb9577d6c892f4a19a7ceeaad2ee9327fcd99e24ffb347/sequana-0.16.1.tar.gz from build tracker '/tmp/pip-build-tracker-d0cjzanz' 2023-11-25T15:52:42,870 Created temporary directory: /tmp/pip-unpack-hju9q6ae 2023-11-25T15:52:42,871 Created temporary directory: /tmp/pip-unpack-d31u9uvc 2023-11-25T15:52:42,962 Building wheels for collected packages: sequana 2023-11-25T15:52:42,966 Created temporary directory: /tmp/pip-wheel-cvqowm7f 2023-11-25T15:52:42,967 Building wheel for sequana (setup.py): started 2023-11-25T15:52:42,968 Destination directory: /tmp/pip-wheel-cvqowm7f 2023-11-25T15:52:42,969 Running command python setup.py bdist_wheel 2023-11-25T15:52:44,023 running bdist_wheel 2023-11-25T15:52:44,158 running build 2023-11-25T15:52:44,158 running build_py 2023-11-25T15:52:44,188 creating build 2023-11-25T15:52:44,188 creating build/lib 2023-11-25T15:52:44,189 creating build/lib/sequana 2023-11-25T15:52:44,190 copying sequana/vcf_filter.py -> build/lib/sequana 2023-11-25T15:52:44,193 copying sequana/coverage.py -> build/lib/sequana 2023-11-25T15:52:44,195 copying sequana/databases.py -> build/lib/sequana 2023-11-25T15:52:44,197 copying sequana/canu_scanner.py -> build/lib/sequana 2023-11-25T15:52:44,199 copying sequana/lazy.py -> build/lib/sequana 2023-11-25T15:52:44,202 copying sequana/genbank.py -> build/lib/sequana 2023-11-25T15:52:44,204 copying sequana/assembly.py -> build/lib/sequana 2023-11-25T15:52:44,206 copying sequana/isoseq.py -> build/lib/sequana 2023-11-25T15:52:44,209 copying sequana/fasta.py -> build/lib/sequana 2023-11-25T15:52:44,211 copying sequana/annotation.py -> build/lib/sequana 2023-11-25T15:52:44,213 copying sequana/errors.py -> build/lib/sequana 2023-11-25T15:52:44,215 copying sequana/fastq.py -> build/lib/sequana 2023-11-25T15:52:44,217 copying sequana/criteria.py -> build/lib/sequana 2023-11-25T15:52:44,219 copying sequana/phred.py -> build/lib/sequana 2023-11-25T15:52:44,222 copying sequana/kmer.py -> build/lib/sequana 2023-11-25T15:52:44,223 copying sequana/snpeff.py -> build/lib/sequana 2023-11-25T15:52:44,225 copying sequana/tools.py -> build/lib/sequana 2023-11-25T15:52:44,228 copying sequana/idr.py -> build/lib/sequana 2023-11-25T15:52:44,229 copying sequana/mpileup.py -> build/lib/sequana 2023-11-25T15:52:44,232 copying sequana/contigs.py -> build/lib/sequana 2023-11-25T15:52:44,234 copying sequana/lazyimports.py -> build/lib/sequana 2023-11-25T15:52:44,236 copying sequana/codon.py -> build/lib/sequana 2023-11-25T15:52:44,238 copying sequana/fastqc.py -> build/lib/sequana 2023-11-25T15:52:44,240 copying sequana/laa.py -> build/lib/sequana 2023-11-25T15:52:44,242 copying sequana/salmon.py -> build/lib/sequana 2023-11-25T15:52:44,244 copying sequana/mgi.py -> build/lib/sequana 2023-11-25T15:52:44,246 copying sequana/rnadiff.py -> build/lib/sequana 2023-11-25T15:52:44,249 copying sequana/cnv.py -> build/lib/sequana 2023-11-25T15:52:44,250 copying sequana/vcftools.py -> build/lib/sequana 2023-11-25T15:52:44,252 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-11-25T15:52:44,254 copying sequana/cigar.py -> build/lib/sequana 2023-11-25T15:52:44,256 copying sequana/mh.py -> build/lib/sequana 2023-11-25T15:52:44,258 copying sequana/mixture.py -> build/lib/sequana 2023-11-25T15:52:44,261 copying sequana/compare.py -> build/lib/sequana 2023-11-25T15:52:44,263 copying sequana/trf.py -> build/lib/sequana 2023-11-25T15:52:44,265 copying sequana/demultiplex.py -> build/lib/sequana 2023-11-25T15:52:44,267 copying sequana/sniffer.py -> build/lib/sequana 2023-11-25T15:52:44,269 copying sequana/itol.py -> build/lib/sequana 2023-11-25T15:52:44,271 copying sequana/krona.py -> build/lib/sequana 2023-11-25T15:52:44,272 copying sequana/featurecounts.py -> build/lib/sequana 2023-11-25T15:52:44,275 copying sequana/gff3.py -> build/lib/sequana 2023-11-25T15:52:44,277 copying sequana/kegg.py -> build/lib/sequana 2023-11-25T15:52:44,279 copying sequana/datatools.py -> build/lib/sequana 2023-11-25T15:52:44,280 copying sequana/iem.py -> build/lib/sequana 2023-11-25T15:52:44,282 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-11-25T15:52:44,284 copying sequana/iuapc.py -> build/lib/sequana 2023-11-25T15:52:44,286 copying sequana/stats.py -> build/lib/sequana 2023-11-25T15:52:44,288 copying sequana/G4hunter.py -> build/lib/sequana 2023-11-25T15:52:44,290 copying sequana/phantom.py -> build/lib/sequana 2023-11-25T15:52:44,292 copying sequana/misc.py -> build/lib/sequana 2023-11-25T15:52:44,294 copying sequana/vst.py -> build/lib/sequana 2023-11-25T15:52:44,296 copying sequana/__init__.py -> build/lib/sequana 2023-11-25T15:52:44,298 copying sequana/homer.py -> build/lib/sequana 2023-11-25T15:52:44,299 copying sequana/running_median.py -> build/lib/sequana 2023-11-25T15:52:44,301 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-11-25T15:52:44,303 copying sequana/sequence.py -> build/lib/sequana 2023-11-25T15:52:44,306 copying sequana/cpg_islands.py -> build/lib/sequana 2023-11-25T15:52:44,308 copying sequana/pacbio.py -> build/lib/sequana 2023-11-25T15:52:44,310 copying sequana/bamtools.py -> build/lib/sequana 2023-11-25T15:52:44,313 copying sequana/ribodesigner.py -> build/lib/sequana 2023-11-25T15:52:44,316 copying sequana/macs3.py -> build/lib/sequana 2023-11-25T15:52:44,318 copying sequana/frip.py -> build/lib/sequana 2023-11-25T15:52:44,319 copying sequana/bed.py -> build/lib/sequana 2023-11-25T15:52:44,322 copying sequana/protein.py -> build/lib/sequana 2023-11-25T15:52:44,323 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-11-25T15:52:44,325 copying sequana/find_motif.py -> build/lib/sequana 2023-11-25T15:52:44,328 copying sequana/taxonomy.py -> build/lib/sequana 2023-11-25T15:52:44,330 copying sequana/bedtools.py -> build/lib/sequana 2023-11-25T15:52:44,333 copying sequana/summary.py -> build/lib/sequana 2023-11-25T15:52:44,335 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-11-25T15:52:44,338 creating build/lib/sequana/kraken 2023-11-25T15:52:44,339 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-11-25T15:52:44,342 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-11-25T15:52:44,344 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-11-25T15:52:44,346 creating build/lib/sequana/resources 2023-11-25T15:52:44,347 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-11-25T15:52:44,349 creating build/lib/sequana/utils 2023-11-25T15:52:44,350 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-11-25T15:52:44,352 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-11-25T15:52:44,353 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-11-25T15:52:44,355 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-11-25T15:52:44,357 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-11-25T15:52:44,359 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-11-25T15:52:44,360 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-11-25T15:52:44,363 creating build/lib/sequana/multiqc 2023-11-25T15:52:44,363 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,365 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,367 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,370 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,372 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,374 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,375 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,377 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,379 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,381 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,383 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,384 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-11-25T15:52:44,387 creating build/lib/sequana/modules_report 2023-11-25T15:52:44,388 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,391 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,392 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,395 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,397 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,399 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,401 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,403 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,405 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,407 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,409 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,411 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,413 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,415 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,417 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,418 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,420 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,422 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,424 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,426 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,428 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-11-25T15:52:44,431 creating build/lib/sequana/rules 2023-11-25T15:52:44,432 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-11-25T15:52:44,434 creating build/lib/sequana/cython 2023-11-25T15:52:44,435 copying sequana/cython/__init__.py -> build/lib/sequana/cython 2023-11-25T15:52:44,436 copying sequana/cython/setup.py -> build/lib/sequana/cython 2023-11-25T15:52:44,438 creating build/lib/sequana/scripts 2023-11-25T15:52:44,439 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-11-25T15:52:44,441 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-11-25T15:52:44,443 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-11-25T15:52:44,444 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-11-25T15:52:44,446 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-11-25T15:52:44,448 creating build/lib/sequana/plots 2023-11-25T15:52:44,449 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-11-25T15:52:44,451 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-11-25T15:52:44,453 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-11-25T15:52:44,454 creating build/lib/sequana/enrichment 2023-11-25T15:52:44,455 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,458 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,459 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,462 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,464 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,465 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,468 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,470 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,472 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-11-25T15:52:44,474 creating build/lib/sequana/viz 2023-11-25T15:52:44,475 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-11-25T15:52:44,477 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-11-25T15:52:44,479 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-11-25T15:52:44,480 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-11-25T15:52:44,483 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-11-25T15:52:44,484 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-11-25T15:52:44,486 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-11-25T15:52:44,488 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-11-25T15:52:44,490 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-11-25T15:52:44,492 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-11-25T15:52:44,494 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-11-25T15:52:44,495 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-11-25T15:52:44,501 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-11-25T15:52:44,503 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-11-25T15:52:44,504 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-11-25T15:52:44,506 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-11-25T15:52:44,508 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-11-25T15:52:44,510 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-11-25T15:52:44,512 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-11-25T15:52:44,514 creating build/lib/sequana/resources/templates 2023-11-25T15:52:44,515 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,517 creating build/lib/sequana/resources/images 2023-11-25T15:52:44,518 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-11-25T15:52:44,520 creating build/lib/sequana/resources/canvas 2023-11-25T15:52:44,520 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-11-25T15:52:44,522 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-11-25T15:52:44,524 creating build/lib/sequana/resources/examples 2023-11-25T15:52:44,525 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-11-25T15:52:44,527 creating build/lib/sequana/resources/css 2023-11-25T15:52:44,527 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-11-25T15:52:44,529 creating build/lib/sequana/resources/data 2023-11-25T15:52:44,530 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-11-25T15:52:44,532 creating build/lib/sequana/resources/snpeff 2023-11-25T15:52:44,533 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-11-25T15:52:44,535 creating build/lib/sequana/resources/doc 2023-11-25T15:52:44,536 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-11-25T15:52:44,538 creating build/lib/sequana/resources/testing 2023-11-25T15:52:44,538 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-11-25T15:52:44,540 creating build/lib/sequana/resources/js 2023-11-25T15:52:44,541 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-11-25T15:52:44,543 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-11-25T15:52:44,544 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-11-25T15:52:44,546 creating build/lib/sequana/resources/doc/rnaseq_0 2023-11-25T15:52:44,547 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-11-25T15:52:44,549 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:52:44,550 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:52:44,552 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:52:44,552 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:52:44,554 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:52:44,555 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:52:44,557 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:52:44,558 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:52:44,560 creating build/lib/sequana/rules/picard-tools 2023-11-25T15:52:44,561 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-11-25T15:52:44,563 creating build/lib/sequana/rules/SnpEff 2023-11-25T15:52:44,564 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-11-25T15:52:44,566 creating build/lib/sequana/rules/Pacbio 2023-11-25T15:52:44,567 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-11-25T15:52:44,569 creating build/lib/sequana/rules/deeptools 2023-11-25T15:52:44,570 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-11-25T15:52:44,572 creating build/lib/sequana/rules/idr 2023-11-25T15:52:44,573 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-11-25T15:52:44,575 creating build/lib/sequana/rules/codecs 2023-11-25T15:52:44,576 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-11-25T15:52:44,578 creating build/lib/sequana/scripts/main 2023-11-25T15:52:44,579 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,581 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,582 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,584 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,585 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,587 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,589 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,590 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,592 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,594 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,595 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,597 copying sequana/scripts/main/g4hunter.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,598 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,600 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,602 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,603 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,605 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,607 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,609 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,611 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,613 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,615 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,616 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,618 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-11-25T15:52:44,770 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-11-25T15:52:44,773 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-11-25T15:52:44,774 creating build/lib/sequana/rules/samtools_sort 2023-11-25T15:52:44,775 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-11-25T15:52:44,777 creating build/lib/sequana/rules/salmon_index 2023-11-25T15:52:44,778 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-11-25T15:52:44,780 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-11-25T15:52:44,781 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-11-25T15:52:44,783 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:52:44,784 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:52:44,787 creating build/lib/sequana/rules/cutadapt 2023-11-25T15:52:44,788 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-11-25T15:52:44,790 creating build/lib/sequana/rules/summary_pipeline 2023-11-25T15:52:44,791 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-11-25T15:52:44,793 creating build/lib/sequana/rules/bamCoverage 2023-11-25T15:52:44,794 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-11-25T15:52:44,796 creating build/lib/sequana/rules/pacbio_quality 2023-11-25T15:52:44,797 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-11-25T15:52:44,799 creating build/lib/sequana/rules/indel_realigner 2023-11-25T15:52:44,800 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-11-25T15:52:44,802 creating build/lib/sequana/rules/igvtools 2023-11-25T15:52:44,803 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-11-25T15:52:44,805 creating build/lib/sequana/rules/fastq_screen_report 2023-11-25T15:52:44,805 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-11-25T15:52:44,808 creating build/lib/sequana/rules/fastq_screen 2023-11-25T15:52:44,808 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-11-25T15:52:44,810 creating build/lib/sequana/rules/spades_get_fastq 2023-11-25T15:52:44,811 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-11-25T15:52:44,813 creating build/lib/sequana/rules/fastq_sampling 2023-11-25T15:52:44,814 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-11-25T15:52:44,816 creating build/lib/sequana/rules/bed_to_gff 2023-11-25T15:52:44,817 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-11-25T15:52:44,819 creating build/lib/sequana/rules/prokka 2023-11-25T15:52:44,820 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-11-25T15:52:44,822 creating build/lib/sequana/rules/bam_quality_filter 2023-11-25T15:52:44,823 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-11-25T15:52:44,825 creating build/lib/sequana/rules/spikes_counting 2023-11-25T15:52:44,826 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-11-25T15:52:44,828 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:52:44,829 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:52:44,831 creating build/lib/sequana/rules/DupRadar 2023-11-25T15:52:44,832 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-11-25T15:52:44,835 creating build/lib/sequana/rules/rnaseqc 2023-11-25T15:52:44,836 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-11-25T15:52:44,838 creating build/lib/sequana/rules/revcomp_rule 2023-11-25T15:52:44,839 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-11-25T15:52:44,841 creating build/lib/sequana/rules/salmon_mapping 2023-11-25T15:52:44,842 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-11-25T15:52:44,844 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-11-25T15:52:44,845 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-11-25T15:52:44,847 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-11-25T15:52:44,848 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-11-25T15:52:44,850 creating build/lib/sequana/rules/format_contigs 2023-11-25T15:52:44,851 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-11-25T15:52:44,854 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:52:44,855 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:52:44,857 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-11-25T15:52:44,858 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-11-25T15:52:44,859 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-11-25T15:52:44,860 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-11-25T15:52:44,862 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:52:44,863 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:52:44,865 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:52:44,866 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:52:44,868 creating build/lib/sequana/rules/kraken 2023-11-25T15:52:44,868 creating build/lib/sequana/rules/kraken/2.0 2023-11-25T15:52:44,869 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-11-25T15:52:44,871 creating build/lib/sequana/rules/kraken/1.0 2023-11-25T15:52:44,872 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-11-25T15:52:44,874 creating build/lib/sequana/rules/kraken/1.1 2023-11-25T15:52:44,875 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-11-25T15:52:44,877 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:52:44,878 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:52:44,880 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:52:44,881 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:52:44,883 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-11-25T15:52:44,884 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-11-25T15:52:44,886 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:52:44,887 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:52:44,889 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:52:44,889 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:52:44,891 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:52:44,892 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:52:44,895 creating build/lib/sequana/rules/idr/intersectionApproach 2023-11-25T15:52:44,896 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-11-25T15:52:44,898 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-11-25T15:52:44,899 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-11-25T15:52:44,901 creating build/lib/sequana/rules/idr/select_peaks 2023-11-25T15:52:44,902 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-11-25T15:52:44,904 creating build/lib/sequana/rules/idr/union_peaks 2023-11-25T15:52:44,905 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-11-25T15:52:44,907 creating build/lib/sequana/rules/idr/metrics_peaks 2023-11-25T15:52:44,908 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-11-25T15:52:44,911 creating build/lib/sequana/rules/idr/compute_idr 2023-11-25T15:52:44,912 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-11-25T15:52:44,914 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:52:44,915 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:52:44,917 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:52:44,918 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:52:44,920 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:52:44,920 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:52:44,922 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:52:44,923 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:52:44,925 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:52:44,926 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:52:44,928 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:52:44,929 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:52:44,930 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:52:44,931 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:52:44,934 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:52:44,935 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:52:44,937 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:52:44,938 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:52:44,940 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:52:44,941 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:52:44,943 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-11-25T15:52:44,944 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:52:44,945 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:52:44,947 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:52:44,948 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:52:44,950 creating build/lib/sequana/rules/SnpEff/snpeff 2023-11-25T15:52:44,951 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:52:44,952 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:52:44,954 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:52:44,955 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:52:44,957 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,959 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,961 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,963 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,965 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-11-25T15:52:44,968 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-11-25T15:52:44,971 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-11-25T15:52:44,974 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-11-25T15:52:44,977 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-11-25T15:52:44,979 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-11-25T15:52:44,981 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-11-25T15:52:44,983 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-11-25T15:52:44,986 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-11-25T15:52:44,988 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-11-25T15:52:44,990 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-11-25T15:52:44,992 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-11-25T15:52:44,995 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-11-25T15:52:44,999 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-11-25T15:52:45,000 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-11-25T15:52:45,003 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-11-25T15:52:45,005 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-11-25T15:52:45,008 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-11-25T15:52:45,015 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-11-25T15:52:45,019 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-11-25T15:52:45,028 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-11-25T15:52:45,032 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-11-25T15:52:45,035 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,037 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,039 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,041 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,043 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,046 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,062 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,065 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,068 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,070 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,071 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,079 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,081 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,083 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,086 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,087 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,095 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,097 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-11-25T15:52:45,099 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,102 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,105 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,107 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,110 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,115 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,119 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,125 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,130 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,138 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,183 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,185 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,189 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-11-25T15:52:45,235 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-25T15:52:45,236 !! 2023-11-25T15:52:45,237 ******************************************************************************** 2023-11-25T15:52:45,237 Please avoid running ``setup.py`` directly. 2023-11-25T15:52:45,238 Instead, use pypa/build, pypa/installer or other 2023-11-25T15:52:45,238 standards-based tools. 2023-11-25T15:52:45,239 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-25T15:52:45,240 ******************************************************************************** 2023-11-25T15:52:45,241 !! 2023-11-25T15:52:45,242 self.initialize_options() 2023-11-25T15:52:45,261 installing to build/bdist.linux-armv7l/wheel 2023-11-25T15:52:45,262 running install 2023-11-25T15:52:45,286 running install_lib 2023-11-25T15:52:45,311 creating build/bdist.linux-armv7l 2023-11-25T15:52:45,312 creating build/bdist.linux-armv7l/wheel 2023-11-25T15:52:45,315 creating build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,316 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,318 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,321 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,323 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,326 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,327 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,330 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,332 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:52:45,333 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:52:45,336 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:52:45,339 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-11-25T15:52:45,340 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,343 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-11-25T15:52:45,344 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,345 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,347 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,348 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,351 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,353 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,354 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-11-25T15:52:45,356 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,357 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,360 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,364 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,366 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,367 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-11-25T15:52:45,369 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:52:45,370 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:52:45,372 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-11-25T15:52:45,374 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:52:45,375 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:52:45,378 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:52:45,379 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:52:45,381 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-11-25T15:52:45,383 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,384 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,386 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,389 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,391 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,394 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,395 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-11-25T15:52:45,400 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,402 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,405 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,412 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,416 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,419 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,426 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,428 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,430 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,431 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-11-25T15:52:45,436 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:52:45,437 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:52:45,439 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-11-25T15:52:45,441 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-11-25T15:52:45,443 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-11-25T15:52:45,444 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-11-25T15:52:45,445 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-11-25T15:52:45,447 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-11-25T15:52:45,448 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-11-25T15:52:45,450 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:52:45,451 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:52:45,452 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-11-25T15:52:45,454 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:52:45,455 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-11-25T15:52:45,458 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:52:45,459 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-11-25T15:52:45,460 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-11-25T15:52:45,462 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-11-25T15:52:45,464 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,465 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,467 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,469 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,471 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,482 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,484 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,486 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,488 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,489 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,498 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,500 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,501 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,503 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,504 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,506 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,516 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,518 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,520 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,522 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-11-25T15:52:45,524 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,525 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,528 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,531 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,533 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,536 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,539 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,541 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,544 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,547 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,548 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,555 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,563 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,565 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,568 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-11-25T15:52:45,572 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,574 copying build/lib/sequana/annotation.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,576 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,577 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,580 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,582 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,585 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,587 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,589 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,591 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,593 copying build/lib/sequana/mpileup.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,595 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,598 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,600 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,602 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,604 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,606 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,608 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,610 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,613 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,615 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,616 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,618 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,619 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,621 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,623 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,625 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,627 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-11-25T15:52:45,629 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,631 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,633 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,634 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,636 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,639 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,641 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,643 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,645 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,647 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,649 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,652 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,653 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,655 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,658 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,659 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-11-25T15:52:45,661 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,663 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,666 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,668 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,670 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,673 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,676 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,676 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,679 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,681 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,684 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,686 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,688 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,690 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,692 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,694 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,697 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,699 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,701 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,703 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,705 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,707 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,709 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,711 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,714 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,716 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,718 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,720 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-11-25T15:52:45,723 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:52:45,724 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-11-25T15:52:45,726 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:52:45,727 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-11-25T15:52:45,729 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-11-25T15:52:45,730 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-11-25T15:52:45,732 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-11-25T15:52:45,733 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-11-25T15:52:45,735 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:52:45,736 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-11-25T15:52:45,738 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-11-25T15:52:45,740 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:52:45,741 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-11-25T15:52:45,743 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-11-25T15:52:45,745 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-11-25T15:52:45,747 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-11-25T15:52:45,748 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-11-25T15:52:45,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-11-25T15:52:45,751 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-11-25T15:52:45,754 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-11-25T15:52:45,755 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-11-25T15:52:45,756 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-11-25T15:52:45,759 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-11-25T15:52:45,760 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-11-25T15:52:45,762 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-11-25T15:52:45,763 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-11-25T15:52:45,766 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:52:45,767 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-11-25T15:52:45,769 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-11-25T15:52:45,770 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-11-25T15:52:45,772 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-11-25T15:52:45,773 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-11-25T15:52:45,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-11-25T15:52:45,777 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-11-25T15:52:45,778 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:52:45,779 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-11-25T15:52:45,782 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:52:45,783 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-11-25T15:52:45,785 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:52:45,786 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-11-25T15:52:45,788 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-11-25T15:52:45,790 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:52:45,791 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-11-25T15:52:45,793 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:52:45,794 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-11-25T15:52:45,796 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-11-25T15:52:45,798 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-11-25T15:52:45,799 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-11-25T15:52:45,801 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-11-25T15:52:45,802 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-11-25T15:52:45,804 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-11-25T15:52:45,805 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:52:45,806 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-11-25T15:52:45,809 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-11-25T15:52:45,810 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-11-25T15:52:45,812 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:52:45,813 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-11-25T15:52:45,815 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-11-25T15:52:45,817 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:52:45,818 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-11-25T15:52:45,820 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-11-25T15:52:45,821 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-11-25T15:52:45,823 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-11-25T15:52:45,824 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-11-25T15:52:45,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-11-25T15:52:45,827 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-11-25T15:52:45,830 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-11-25T15:52:45,830 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-11-25T15:52:45,833 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-11-25T15:52:45,834 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-11-25T15:52:45,836 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-11-25T15:52:45,837 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-11-25T15:52:45,839 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-11-25T15:52:45,840 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-11-25T15:52:45,842 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-11-25T15:52:45,843 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-11-25T15:52:45,845 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-11-25T15:52:45,846 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-11-25T15:52:45,849 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-11-25T15:52:45,850 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-11-25T15:52:45,852 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-11-25T15:52:45,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:52:45,855 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-11-25T15:52:45,857 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-11-25T15:52:45,858 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-11-25T15:52:45,861 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-11-25T15:52:45,862 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-11-25T15:52:45,864 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-11-25T15:52:45,865 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-11-25T15:52:45,867 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-11-25T15:52:45,868 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-11-25T15:52:45,870 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-11-25T15:52:45,872 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-11-25T15:52:45,872 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-11-25T15:52:45,875 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-11-25T15:52:45,875 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-11-25T15:52:45,878 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-11-25T15:52:45,879 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-11-25T15:52:45,882 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:52:45,882 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-11-25T15:52:45,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-11-25T15:52:45,886 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-11-25T15:52:45,888 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-11-25T15:52:45,889 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-11-25T15:52:45,891 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:52:45,893 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-11-25T15:52:45,894 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-11-25T15:52:45,896 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-11-25T15:52:45,897 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-11-25T15:52:45,900 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-11-25T15:52:45,901 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:52:45,902 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-11-25T15:52:45,904 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:52:45,905 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-11-25T15:52:45,908 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:52:45,909 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-11-25T15:52:45,911 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:52:45,912 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-11-25T15:52:45,915 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:52:45,916 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-11-25T15:52:45,918 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:52:45,919 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-11-25T15:52:45,921 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-11-25T15:52:45,923 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:52:45,924 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-11-25T15:52:45,926 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:52:45,927 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-11-25T15:52:45,929 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:52:45,930 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-11-25T15:52:45,932 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:52:45,933 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-11-25T15:52:45,935 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-11-25T15:52:45,936 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-11-25T15:52:45,938 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-11-25T15:52:45,940 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-11-25T15:52:45,941 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-11-25T15:52:45,943 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-11-25T15:52:45,944 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-11-25T15:52:45,946 creating build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:52:45,947 copying build/lib/sequana/cython/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:52:45,949 copying build/lib/sequana/cython/setup.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-11-25T15:52:45,951 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,953 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,955 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:45,957 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:45,958 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:45,961 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:45,964 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,965 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,967 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,969 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,971 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,973 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,976 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,978 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,979 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,982 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,983 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,985 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,987 copying build/lib/sequana/scripts/main/g4hunter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,989 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,991 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,993 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,994 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,996 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:45,998 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,000 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,002 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,004 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,006 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,008 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,010 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-11-25T15:52:46,012 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:46,013 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:46,015 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-11-25T15:52:46,018 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,020 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,023 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,025 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,027 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,029 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,031 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,033 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,035 copying build/lib/sequana/G4hunter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,037 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,039 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,041 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,043 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,045 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:52:46,046 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:52:46,048 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:52:46,050 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-11-25T15:52:46,052 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,054 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,056 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,058 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,061 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,063 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,065 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,068 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,071 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,072 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,075 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,076 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,079 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,081 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,083 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,085 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,088 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,090 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-11-25T15:52:46,091 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,094 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,095 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,098 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,100 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,101 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,103 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,105 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,107 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,109 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,111 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,113 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,115 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,117 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,119 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,121 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,123 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,124 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,126 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,128 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,130 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,132 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,134 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,136 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-11-25T15:52:46,137 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,140 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,142 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,144 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,147 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,150 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-11-25T15:52:46,152 running install_egg_info 2023-11-25T15:52:46,183 running egg_info 2023-11-25T15:52:46,210 writing sequana.egg-info/PKG-INFO 2023-11-25T15:52:46,224 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-11-25T15:52:46,227 writing entry points to sequana.egg-info/entry_points.txt 2023-11-25T15:52:46,233 writing requirements to sequana.egg-info/requires.txt 2023-11-25T15:52:46,235 writing top-level names to sequana.egg-info/top_level.txt 2023-11-25T15:52:46,430 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-11-25T15:52:46,440 reading manifest template 'MANIFEST.in' 2023-11-25T15:52:46,443 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-11-25T15:52:46,445 warning: no previously-included files matching '*pyc' found under directory '*' 2023-11-25T15:52:46,897 warning: no files found matching 'test/requirements*txt' 2023-11-25T15:52:46,899 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-11-25T15:52:46,900 warning: no previously-included files matching '*' found under directory 'test' 2023-11-25T15:52:46,901 warning: no previously-included files matching '*' found under directory 'doc' 2023-11-25T15:52:46,902 warning: no previously-included files found matching 'sequana/rm2.py' 2023-11-25T15:52:46,903 adding license file 'LICENSE' 2023-11-25T15:52:46,919 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-11-25T15:52:46,921 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.16.1-py3.11.egg-info 2023-11-25T15:52:46,935 running install_scripts 2023-11-25T15:52:46,965 creating build/bdist.linux-armv7l/wheel/sequana-0.16.1.dist-info/WHEEL 2023-11-25T15:52:46,967 creating '/tmp/pip-wheel-cvqowm7f/sequana-0.16.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-25T15:52:46,970 adding 'sequana/G4hunter.py' 2023-11-25T15:52:46,972 adding 'sequana/__init__.py' 2023-11-25T15:52:46,973 adding 'sequana/annotation.py' 2023-11-25T15:52:46,975 adding 'sequana/assembly.py' 2023-11-25T15:52:46,982 adding 'sequana/bamtools.py' 2023-11-25T15:52:46,984 adding 'sequana/bed.py' 2023-11-25T15:52:46,993 adding 'sequana/bedtools.py' 2023-11-25T15:52:46,995 adding 'sequana/canu_scanner.py' 2023-11-25T15:52:46,997 adding 'sequana/cigar.py' 2023-11-25T15:52:46,998 adding 'sequana/cnv.py' 2023-11-25T15:52:46,999 adding 'sequana/codon.py' 2023-11-25T15:52:47,002 adding 'sequana/compare.py' 2023-11-25T15:52:47,004 adding 'sequana/contigs.py' 2023-11-25T15:52:47,006 adding 'sequana/coverage.py' 2023-11-25T15:52:47,007 adding 'sequana/cpg_islands.py' 2023-11-25T15:52:47,008 adding 'sequana/criteria.py' 2023-11-25T15:52:47,011 adding 'sequana/databases.py' 2023-11-25T15:52:47,012 adding 'sequana/datatools.py' 2023-11-25T15:52:47,014 adding 'sequana/demultiplex.py' 2023-11-25T15:52:47,015 adding 'sequana/errors.py' 2023-11-25T15:52:47,017 adding 'sequana/fasta.py' 2023-11-25T15:52:47,019 adding 'sequana/fasta_gff_correction.py' 2023-11-25T15:52:47,024 adding 'sequana/fastq.py' 2023-11-25T15:52:47,026 adding 'sequana/fastqc.py' 2023-11-25T15:52:47,028 adding 'sequana/featurecounts.py' 2023-11-25T15:52:47,030 adding 'sequana/find_motif.py' 2023-11-25T15:52:47,032 adding 'sequana/freebayes_bcf_filter.py' 2023-11-25T15:52:47,034 adding 'sequana/freebayes_vcf_filter.py' 2023-11-25T15:52:47,035 adding 'sequana/frip.py' 2023-11-25T15:52:47,037 adding 'sequana/genbank.py' 2023-11-25T15:52:47,040 adding 'sequana/gff3.py' 2023-11-25T15:52:47,042 adding 'sequana/gtf_fixer.py' 2023-11-25T15:52:47,043 adding 'sequana/homer.py' 2023-11-25T15:52:47,044 adding 'sequana/idr.py' 2023-11-25T15:52:47,046 adding 'sequana/iem.py' 2023-11-25T15:52:47,049 adding 'sequana/isoseq.py' 2023-11-25T15:52:47,051 adding 'sequana/itol.py' 2023-11-25T15:52:47,052 adding 'sequana/iuapc.py' 2023-11-25T15:52:47,054 adding 'sequana/kegg.py' 2023-11-25T15:52:47,055 adding 'sequana/kmer.py' 2023-11-25T15:52:47,056 adding 'sequana/krona.py' 2023-11-25T15:52:47,058 adding 'sequana/laa.py' 2023-11-25T15:52:47,059 adding 'sequana/lazy.py' 2023-11-25T15:52:47,060 adding 'sequana/lazyimports.py' 2023-11-25T15:52:47,062 adding 'sequana/macs3.py' 2023-11-25T15:52:47,064 adding 'sequana/mgi.py' 2023-11-25T15:52:47,065 adding 'sequana/mh.py' 2023-11-25T15:52:47,066 adding 'sequana/misc.py' 2023-11-25T15:52:47,068 adding 'sequana/mixture.py' 2023-11-25T15:52:47,070 adding 'sequana/mpileup.py' 2023-11-25T15:52:47,075 adding 'sequana/pacbio.py' 2023-11-25T15:52:47,077 adding 'sequana/pacbio_amplicon.py' 2023-11-25T15:52:47,079 adding 'sequana/phantom.py' 2023-11-25T15:52:47,081 adding 'sequana/phred.py' 2023-11-25T15:52:47,082 adding 'sequana/protein.py' 2023-11-25T15:52:47,084 adding 'sequana/ribodesigner.py' 2023-11-25T15:52:47,090 adding 'sequana/rnadiff.py' 2023-11-25T15:52:47,092 adding 'sequana/running_median.py' 2023-11-25T15:52:47,094 adding 'sequana/salmon.py' 2023-11-25T15:52:47,098 adding 'sequana/sequence.py' 2023-11-25T15:52:47,100 adding 'sequana/sniffer.py' 2023-11-25T15:52:47,101 adding 'sequana/snpeff.py' 2023-11-25T15:52:47,103 adding 'sequana/stats.py' 2023-11-25T15:52:47,104 adding 'sequana/summary.py' 2023-11-25T15:52:47,107 adding 'sequana/taxonomy.py' 2023-11-25T15:52:47,109 adding 'sequana/tools.py' 2023-11-25T15:52:47,111 adding 'sequana/trf.py' 2023-11-25T15:52:47,113 adding 'sequana/vcf_filter.py' 2023-11-25T15:52:47,115 adding 'sequana/vcftools.py' 2023-11-25T15:52:47,116 adding 'sequana/vst.py' 2023-11-25T15:52:47,118 adding 'sequana/cython/__init__.py' 2023-11-25T15:52:47,119 adding 'sequana/cython/setup.py' 2023-11-25T15:52:47,120 adding 'sequana/enrichment/__init__.py' 2023-11-25T15:52:47,122 adding 'sequana/enrichment/gsea.py' 2023-11-25T15:52:47,125 adding 'sequana/enrichment/kegg.py' 2023-11-25T15:52:47,127 adding 'sequana/enrichment/mart.py' 2023-11-25T15:52:47,128 adding 'sequana/enrichment/ontology.py' 2023-11-25T15:52:47,131 adding 'sequana/enrichment/panther.py' 2023-11-25T15:52:47,133 adding 'sequana/enrichment/plot_go_terms.py' 2023-11-25T15:52:47,134 adding 'sequana/enrichment/quickgo.py' 2023-11-25T15:52:47,136 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-11-25T15:52:47,137 adding 'sequana/kraken/__init__.py' 2023-11-25T15:52:47,143 adding 'sequana/kraken/analysis.py' 2023-11-25T15:52:47,145 adding 'sequana/kraken/multikraken.py' 2023-11-25T15:52:47,147 adding 'sequana/modules_report/__init__.py' 2023-11-25T15:52:47,148 adding 'sequana/modules_report/bamqc.py' 2023-11-25T15:52:47,150 adding 'sequana/modules_report/base_module.py' 2023-11-25T15:52:47,151 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-11-25T15:52:47,154 adding 'sequana/modules_report/coverage.py' 2023-11-25T15:52:47,157 adding 'sequana/modules_report/cutadapt.py' 2023-11-25T15:52:47,159 adding 'sequana/modules_report/fastq_stats.py' 2023-11-25T15:52:47,160 adding 'sequana/modules_report/fastqc.py' 2023-11-25T15:52:47,161 adding 'sequana/modules_report/joint_calling.py' 2023-11-25T15:52:47,163 adding 'sequana/modules_report/kegg_enrichment.py' 2023-11-25T15:52:47,164 adding 'sequana/modules_report/kraken.py' 2023-11-25T15:52:47,167 adding 'sequana/modules_report/multi_summary.py' 2023-11-25T15:52:47,168 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-11-25T15:52:47,170 adding 'sequana/modules_report/panther_enrichment.py' 2023-11-25T15:52:47,171 adding 'sequana/modules_report/phix.py' 2023-11-25T15:52:47,173 adding 'sequana/modules_report/quast.py' 2023-11-25T15:52:47,175 adding 'sequana/modules_report/rnadiff.py' 2023-11-25T15:52:47,177 adding 'sequana/modules_report/summary.py' 2023-11-25T15:52:47,179 adding 'sequana/modules_report/trf.py' 2023-11-25T15:52:47,180 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-11-25T15:52:47,182 adding 'sequana/modules_report/variant_calling.py' 2023-11-25T15:52:47,183 adding 'sequana/multiqc/__init__.py' 2023-11-25T15:52:47,185 adding 'sequana/multiqc/bamtools_stats.py' 2023-11-25T15:52:47,186 adding 'sequana/multiqc/config.py' 2023-11-25T15:52:47,188 adding 'sequana/multiqc/coverage.py' 2023-11-25T15:52:47,190 adding 'sequana/multiqc/isoseq.py' 2023-11-25T15:52:47,191 adding 'sequana/multiqc/isoseq_qc.py' 2023-11-25T15:52:47,193 adding 'sequana/multiqc/kraken.py' 2023-11-25T15:52:47,194 adding 'sequana/multiqc/laa.py' 2023-11-25T15:52:47,195 adding 'sequana/multiqc/multiqc_config.yaml' 2023-11-25T15:52:47,197 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-11-25T15:52:47,198 adding 'sequana/multiqc/pacbio_qc.py' 2023-11-25T15:52:47,200 adding 'sequana/multiqc/plots.py' 2023-11-25T15:52:47,201 adding 'sequana/multiqc/quality_control.py' 2023-11-25T15:52:47,203 adding 'sequana/plots/__init__.py' 2023-11-25T15:52:47,204 adding 'sequana/plots/canvasjs_base.py' 2023-11-25T15:52:47,206 adding 'sequana/plots/canvasjs_linegraph.py' 2023-11-25T15:52:47,207 adding 'sequana/resources/__init__.py' 2023-11-25T15:52:47,208 adding 'sequana/resources/canvas/__init__.py' 2023-11-25T15:52:47,210 adding 'sequana/resources/canvas/bar.py' 2023-11-25T15:52:47,211 adding 'sequana/resources/css/__init__.py' 2023-11-25T15:52:47,221 adding 'sequana/resources/css/bootstrap.min.css' 2023-11-25T15:52:47,223 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-11-25T15:52:47,225 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-11-25T15:52:47,226 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-11-25T15:52:47,228 adding 'sequana/resources/css/report.css' 2023-11-25T15:52:47,241 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-11-25T15:52:47,255 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-11-25T15:52:47,258 adding 'sequana/resources/data/README.rst' 2023-11-25T15:52:47,259 adding 'sequana/resources/data/__init__.py' 2023-11-25T15:52:47,317 adding 'sequana/resources/data/kegg.csv' 2023-11-25T15:52:47,328 adding 'sequana/resources/data/measles.fa' 2023-11-25T15:52:47,330 adding 'sequana/resources/data/panther.csv' 2023-11-25T15:52:47,332 adding 'sequana/resources/data/phiX174.fa' 2023-11-25T15:52:47,393 adding 'sequana/resources/data/virus.bed' 2023-11-25T15:52:47,397 adding 'sequana/resources/doc/__init__.py' 2023-11-25T15:52:47,398 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-11-25T15:52:47,399 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-11-25T15:52:47,400 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-11-25T15:52:47,402 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-11-25T15:52:47,403 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-11-25T15:52:47,404 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-11-25T15:52:47,405 adding 'sequana/resources/examples/README.rst' 2023-11-25T15:52:47,406 adding 'sequana/resources/examples/__init__.py' 2023-11-25T15:52:47,409 adding 'sequana/resources/examples/test.fastq.gz' 2023-11-25T15:52:47,410 adding 'sequana/resources/examples/test_kraken.out' 2023-11-25T15:52:47,415 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-11-25T15:52:47,417 adding 'sequana/resources/images/__init__.py' 2023-11-25T15:52:47,426 adding 'sequana/resources/images/logo_256x256.png' 2023-11-25T15:52:47,428 adding 'sequana/resources/images/no_data.jpg' 2023-11-25T15:52:47,430 adding 'sequana/resources/images/no_data.png' 2023-11-25T15:52:47,431 adding 'sequana/resources/js/__init__.py' 2023-11-25T15:52:47,435 adding 'sequana/resources/js/bootstrap.min.js' 2023-11-25T15:52:47,438 adding 'sequana/resources/js/buttons.html5.min.js' 2023-11-25T15:52:47,439 adding 'sequana/resources/js/buttons.print.min.js' 2023-11-25T15:52:47,462 adding 'sequana/resources/js/canvasjs.min.js' 2023-11-25T15:52:47,466 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-11-25T15:52:47,508 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-11-25T15:52:47,522 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-11-25T15:52:47,535 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-11-25T15:52:47,548 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-11-25T15:52:47,560 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-11-25T15:52:47,562 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-11-25T15:52:47,563 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-11-25T15:52:47,565 adding 'sequana/resources/js/papaparse.min.js' 2023-11-25T15:52:47,567 adding 'sequana/resources/snpeff/__init__.py' 2023-11-25T15:52:47,568 adding 'sequana/resources/snpeff/snpEff.config' 2023-11-25T15:52:47,570 adding 'sequana/resources/templates/__init__.py' 2023-11-25T15:52:47,571 adding 'sequana/resources/templates/base.html' 2023-11-25T15:52:47,572 adding 'sequana/resources/templates/joint_calling.html' 2023-11-25T15:52:47,574 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-11-25T15:52:47,575 adding 'sequana/resources/templates/standard.html' 2023-11-25T15:52:47,576 adding 'sequana/resources/templates/vcf_diff.html' 2023-11-25T15:52:47,578 adding 'sequana/resources/testing/README.rst' 2023-11-25T15:52:47,579 adding 'sequana/resources/testing/__init__.py' 2023-11-25T15:52:47,580 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-11-25T15:52:47,588 adding 'sequana/resources/testing/test.fasta' 2023-11-25T15:52:47,601 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-11-25T15:52:47,606 adding 'sequana/resources/testing/test_blast_local.xml' 2023-11-25T15:52:47,639 adding 'sequana/resources/testing/test_coverage.csv' 2023-11-25T15:52:47,643 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-11-25T15:52:47,644 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-11-25T15:52:47,645 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-11-25T15:52:47,646 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-11-25T15:52:47,648 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-11-25T15:52:47,649 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-11-25T15:52:47,650 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-11-25T15:52:47,651 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-11-25T15:52:47,652 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-11-25T15:52:47,653 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-11-25T15:52:47,881 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-11-25T15:52:47,887 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-11-25T15:52:47,889 adding 'sequana/rules/README.rst' 2023-11-25T15:52:47,890 adding 'sequana/rules/__init__.py' 2023-11-25T15:52:47,891 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-11-25T15:52:47,893 adding 'sequana/rules/Pacbio/__init__.py' 2023-11-25T15:52:47,894 adding 'sequana/rules/SnpEff/__init__.py' 2023-11-25T15:52:47,896 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-11-25T15:52:47,897 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-11-25T15:52:47,899 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-11-25T15:52:47,900 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-11-25T15:52:47,902 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-11-25T15:52:47,903 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-11-25T15:52:47,905 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-11-25T15:52:47,906 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-11-25T15:52:47,908 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-11-25T15:52:47,909 adding 'sequana/rules/codecs/__init__.py' 2023-11-25T15:52:47,911 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-11-25T15:52:47,912 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-11-25T15:52:47,914 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-11-25T15:52:47,915 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-11-25T15:52:47,916 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-11-25T15:52:47,918 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-11-25T15:52:47,919 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-11-25T15:52:47,921 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-11-25T15:52:47,923 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-11-25T15:52:47,924 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-11-25T15:52:47,926 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-11-25T15:52:47,927 adding 'sequana/rules/deeptools/__init__.py' 2023-11-25T15:52:47,928 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-11-25T15:52:47,930 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-11-25T15:52:47,931 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-11-25T15:52:47,933 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-11-25T15:52:47,934 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-11-25T15:52:47,936 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-11-25T15:52:47,937 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-11-25T15:52:47,939 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-11-25T15:52:47,941 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-11-25T15:52:47,942 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-11-25T15:52:47,944 adding 'sequana/rules/idr/__init__.py' 2023-11-25T15:52:47,945 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-11-25T15:52:47,947 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-11-25T15:52:47,949 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-11-25T15:52:47,950 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-11-25T15:52:47,952 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-11-25T15:52:47,954 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-11-25T15:52:47,955 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-11-25T15:52:47,956 adding 'sequana/rules/igvtools/igvtools.rules' 2023-11-25T15:52:47,958 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-11-25T15:52:47,959 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-11-25T15:52:47,961 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-11-25T15:52:47,963 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-11-25T15:52:47,965 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-11-25T15:52:47,966 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-11-25T15:52:47,968 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-11-25T15:52:47,969 adding 'sequana/rules/picard-tools/__init__.py' 2023-11-25T15:52:47,971 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-11-25T15:52:47,972 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-11-25T15:52:47,974 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-11-25T15:52:47,975 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-11-25T15:52:47,977 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-11-25T15:52:47,978 adding 'sequana/rules/prokka/prokka.rules' 2023-11-25T15:52:47,980 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-11-25T15:52:47,981 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-11-25T15:52:47,983 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-11-25T15:52:47,984 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-11-25T15:52:47,986 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-11-25T15:52:47,987 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-11-25T15:52:47,989 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-11-25T15:52:47,990 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-11-25T15:52:47,992 adding 'sequana/scripts/__init__.py' 2023-11-25T15:52:47,993 adding 'sequana/scripts/common.py' 2023-11-25T15:52:47,996 adding 'sequana/scripts/coverage.py' 2023-11-25T15:52:47,998 adding 'sequana/scripts/substractor.py' 2023-11-25T15:52:47,999 adding 'sequana/scripts/taxonomy.py' 2023-11-25T15:52:48,001 adding 'sequana/scripts/main/__init__.py' 2023-11-25T15:52:48,002 adding 'sequana/scripts/main/biomart.py' 2023-11-25T15:52:48,004 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-11-25T15:52:48,006 adding 'sequana/scripts/main/enrichment_panther.py' 2023-11-25T15:52:48,007 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-11-25T15:52:48,009 adding 'sequana/scripts/main/fasta.py' 2023-11-25T15:52:48,010 adding 'sequana/scripts/main/fastq.py' 2023-11-25T15:52:48,011 adding 'sequana/scripts/main/feature_count.py' 2023-11-25T15:52:48,012 adding 'sequana/scripts/main/g4hunter.py' 2023-11-25T15:52:48,014 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-11-25T15:52:48,015 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-11-25T15:52:48,016 adding 'sequana/scripts/main/gtf_fixer.py' 2023-11-25T15:52:48,018 adding 'sequana/scripts/main/lane_merging.py' 2023-11-25T15:52:48,019 adding 'sequana/scripts/main/main.py' 2023-11-25T15:52:48,020 adding 'sequana/scripts/main/mapping.py' 2023-11-25T15:52:48,022 adding 'sequana/scripts/main/ribodesigner.py' 2023-11-25T15:52:48,024 adding 'sequana/scripts/main/rnadiff.py' 2023-11-25T15:52:48,026 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-11-25T15:52:48,027 adding 'sequana/scripts/main/salmon.py' 2023-11-25T15:52:48,028 adding 'sequana/scripts/main/samplesheet.py' 2023-11-25T15:52:48,029 adding 'sequana/scripts/main/summary.py' 2023-11-25T15:52:48,031 adding 'sequana/scripts/main/taxonomy.py' 2023-11-25T15:52:48,032 adding 'sequana/scripts/main/utils.py' 2023-11-25T15:52:48,033 adding 'sequana/scripts/main/variants_comparison.py' 2023-11-25T15:52:48,035 adding 'sequana/utils/__init__.py' 2023-11-25T15:52:48,036 adding 'sequana/utils/config.py' 2023-11-25T15:52:48,038 adding 'sequana/utils/datatables_js.py' 2023-11-25T15:52:48,039 adding 'sequana/utils/df2html.py' 2023-11-25T15:52:48,040 adding 'sequana/utils/pandas.py' 2023-11-25T15:52:48,042 adding 'sequana/utils/singleton.py' 2023-11-25T15:52:48,043 adding 'sequana/utils/tree.py' 2023-11-25T15:52:48,044 adding 'sequana/viz/__init__.py' 2023-11-25T15:52:48,045 adding 'sequana/viz/anova.py' 2023-11-25T15:52:48,047 adding 'sequana/viz/boxplot.py' 2023-11-25T15:52:48,048 adding 'sequana/viz/clusterisation.py' 2023-11-25T15:52:48,049 adding 'sequana/viz/core.py' 2023-11-25T15:52:48,052 adding 'sequana/viz/corrplot.py' 2023-11-25T15:52:48,054 adding 'sequana/viz/dendogram.py' 2023-11-25T15:52:48,056 adding 'sequana/viz/heatmap.py' 2023-11-25T15:52:48,058 adding 'sequana/viz/hinton.py' 2023-11-25T15:52:48,059 adding 'sequana/viz/hist2d.py' 2023-11-25T15:52:48,060 adding 'sequana/viz/imshow.py' 2023-11-25T15:52:48,062 adding 'sequana/viz/isomap.py' 2023-11-25T15:52:48,063 adding 'sequana/viz/linkage.py' 2023-11-25T15:52:48,064 adding 'sequana/viz/mds.py' 2023-11-25T15:52:48,065 adding 'sequana/viz/pca.py' 2023-11-25T15:52:48,067 adding 'sequana/viz/plotly.py' 2023-11-25T15:52:48,068 adding 'sequana/viz/scatter.py' 2023-11-25T15:52:48,070 adding 'sequana/viz/venn.py' 2023-11-25T15:52:48,071 adding 'sequana/viz/volcano.py' 2023-11-25T15:52:48,073 adding 'sequana-0.16.1.dist-info/LICENSE' 2023-11-25T15:52:48,076 adding 'sequana-0.16.1.dist-info/METADATA' 2023-11-25T15:52:48,077 adding 'sequana-0.16.1.dist-info/WHEEL' 2023-11-25T15:52:48,078 adding 'sequana-0.16.1.dist-info/entry_points.txt' 2023-11-25T15:52:48,078 adding 'sequana-0.16.1.dist-info/top_level.txt' 2023-11-25T15:52:48,084 adding 'sequana-0.16.1.dist-info/RECORD' 2023-11-25T15:52:48,106 removing build/bdist.linux-armv7l/wheel 2023-11-25T15:52:48,323 Building wheel for sequana (setup.py): finished with status 'done' 2023-11-25T15:52:48,347 Created wheel for sequana: filename=sequana-0.16.1-py3-none-any.whl size=1772524 sha256=035337ae5c37ebe983c66d7dc2210e5463b60fb3e71a4ea7acdacf6948eba33f 2023-11-25T15:52:48,348 Stored in directory: /tmp/pip-ephem-wheel-cache-9yb1wpti/wheels/2a/d5/28/971c6b416fca2d57d6eeeadf8836392af0639770475f6d84c0 2023-11-25T15:52:48,372 Successfully built sequana 2023-11-25T15:52:48,427 Removed build tracker: '/tmp/pip-build-tracker-d0cjzanz'