2023-11-27T19:39:46,682 Created temporary directory: /tmp/pip-build-tracker-o0nqqca0 2023-11-27T19:39:46,683 Initialized build tracking at /tmp/pip-build-tracker-o0nqqca0 2023-11-27T19:39:46,684 Created build tracker: /tmp/pip-build-tracker-o0nqqca0 2023-11-27T19:39:46,684 Entered build tracker: /tmp/pip-build-tracker-o0nqqca0 2023-11-27T19:39:46,685 Created temporary directory: /tmp/pip-wheel-2i5fxs1a 2023-11-27T19:39:46,688 Created temporary directory: /tmp/pip-ephem-wheel-cache-xv5axwkg 2023-11-27T19:39:46,711 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-27T19:39:46,714 2 location(s) to search for versions of nmdc-runtime: 2023-11-27T19:39:46,714 * https://pypi.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,714 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,715 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,716 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,717 Found index url https://pypi.org/simple/ 2023-11-27T19:39:46,932 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-27T19:39:46,938 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:46,939 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-27T19:39:46,939 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:46,940 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-27T19:39:46,941 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:46,942 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-27T19:39:46,943 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:46,944 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:46,944 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-27T19:39:46,945 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,946 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,947 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-27T19:39:46,948 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,948 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-27T19:39:46,949 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,950 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-27T19:39:46,950 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,951 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-27T19:39:46,952 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,953 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-11-27T19:39:46,954 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,955 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-11-27T19:39:46,956 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,956 Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10 2023-11-27T19:39:46,957 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,958 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2023-11-27T19:39:46,959 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/13/bd/6dd46143615928b35bc35b6f246fff3cb4c55d35a8555d47f7cd7565a605/nmdc_runtime-1.0.12-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:46,960 Found link https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2023-11-27T19:39:46,961 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,961 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-27T19:39:46,963 Found index url https://www.piwheels.org/simple/ 2023-11-27T19:39:47,131 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-27T19:39:47,136 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,136 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,137 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,137 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,138 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,138 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,139 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,139 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-27T19:39:47,140 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:47,140 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:47,141 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:47,142 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-27T19:39:47,142 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-27T19:39:47,143 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-27T19:39:47,164 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-27T19:39:47,182 Collecting nmdc-runtime==1.0.12 2023-11-27T19:39:47,185 Created temporary directory: /tmp/pip-unpack-66uy1cxb 2023-11-27T19:39:47,407 Downloading nmdc_runtime-1.0.12.tar.gz (63.7 MB) 2023-11-27T19:40:02,335 Added nmdc-runtime==1.0.12 from https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz to build tracker '/tmp/pip-build-tracker-o0nqqca0' 2023-11-27T19:40:02,337 Running setup.py (path:/tmp/pip-wheel-2i5fxs1a/nmdc-runtime_dfc748c3816d4abaa4d06676ff2c74a1/setup.py) egg_info for package nmdc-runtime 2023-11-27T19:40:02,338 Created temporary directory: /tmp/pip-pip-egg-info-8j8el8rl 2023-11-27T19:40:02,339 Preparing metadata (setup.py): started 2023-11-27T19:40:02,340 Running command python setup.py egg_info 2023-11-27T19:40:03,058 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-27T19:40:03,059 !! 2023-11-27T19:40:03,060 ******************************************************************************** 2023-11-27T19:40:03,061 Requirements should be satisfied by a PEP 517 installer. 2023-11-27T19:40:03,061 If you are using pip, you can try `pip install --use-pep517`. 2023-11-27T19:40:03,062 ******************************************************************************** 2023-11-27T19:40:03,063 !! 2023-11-27T19:40:03,064 dist.fetch_build_eggs(dist.setup_requires) 2023-11-27T19:40:06,060 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-27T19:40:06,159 running egg_info 2023-11-27T19:40:06,160 creating /tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info 2023-11-27T19:40:06,186 writing /tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/PKG-INFO 2023-11-27T19:40:06,190 writing dependency_links to /tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/dependency_links.txt 2023-11-27T19:40:06,191 writing entry points to /tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/entry_points.txt 2023-11-27T19:40:06,193 writing top-level names to /tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/top_level.txt 2023-11-27T19:40:06,194 writing manifest file '/tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-27T19:40:06,382 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-27T19:40:06,388 reading manifest file '/tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-27T19:40:06,389 adding license file 'LICENSE' 2023-11-27T19:40:06,393 writing manifest file '/tmp/pip-pip-egg-info-8j8el8rl/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-27T19:40:06,505 Preparing metadata (setup.py): finished with status 'done' 2023-11-27T19:40:06,509 Source in /tmp/pip-wheel-2i5fxs1a/nmdc-runtime_dfc748c3816d4abaa4d06676ff2c74a1 has version 1.0.12, which satisfies requirement nmdc-runtime==1.0.12 from https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz 2023-11-27T19:40:06,511 Removed nmdc-runtime==1.0.12 from https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz from build tracker '/tmp/pip-build-tracker-o0nqqca0' 2023-11-27T19:40:06,517 Created temporary directory: /tmp/pip-unpack-k1lu48e6 2023-11-27T19:40:06,518 Created temporary directory: /tmp/pip-unpack-6rz2zfwj 2023-11-27T19:40:06,521 Building wheels for collected packages: nmdc-runtime 2023-11-27T19:40:06,525 Created temporary directory: /tmp/pip-wheel-az56cfxk 2023-11-27T19:40:06,526 Building wheel for nmdc-runtime (setup.py): started 2023-11-27T19:40:06,527 Destination directory: /tmp/pip-wheel-az56cfxk 2023-11-27T19:40:06,527 Running command python setup.py bdist_wheel 2023-11-27T19:40:07,208 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-27T19:40:07,208 !! 2023-11-27T19:40:07,209 ******************************************************************************** 2023-11-27T19:40:07,209 Requirements should be satisfied by a PEP 517 installer. 2023-11-27T19:40:07,210 If you are using pip, you can try `pip install --use-pep517`. 2023-11-27T19:40:07,211 ******************************************************************************** 2023-11-27T19:40:07,212 !! 2023-11-27T19:40:07,212 dist.fetch_build_eggs(dist.setup_requires) 2023-11-27T19:40:07,735 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-27T19:40:07,828 running bdist_wheel 2023-11-27T19:40:07,934 running build 2023-11-27T19:40:07,935 running build_py 2023-11-27T19:40:07,965 creating build 2023-11-27T19:40:07,965 creating build/lib 2023-11-27T19:40:07,967 creating build/lib/nmdc_runtime 2023-11-27T19:40:07,968 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-27T19:40:07,970 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-27T19:40:07,971 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-27T19:40:07,974 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-27T19:40:07,976 creating build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,977 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,979 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,981 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,984 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,986 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,988 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-27T19:40:07,991 creating build/lib/nmdc_runtime/infrastructure 2023-11-27T19:40:07,992 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-27T19:40:07,994 creating build/lib/nmdc_runtime/domain 2023-11-27T19:40:07,995 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-27T19:40:07,997 creating build/lib/nmdc_runtime/client 2023-11-27T19:40:07,998 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-27T19:40:08,000 creating build/lib/nmdc_runtime/minter 2023-11-27T19:40:08,001 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-27T19:40:08,003 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-27T19:40:08,005 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-27T19:40:08,007 creating build/lib/nmdc_runtime/site 2023-11-27T19:40:08,008 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,011 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,013 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,014 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,017 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,019 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-27T19:40:08,021 creating build/lib/nmdc_runtime/core 2023-11-27T19:40:08,022 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-27T19:40:08,024 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,025 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,026 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,028 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,029 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,031 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,033 creating build/lib/nmdc_runtime/domain/users 2023-11-27T19:40:08,034 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-27T19:40:08,036 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-27T19:40:08,037 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-27T19:40:08,039 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-27T19:40:08,041 creating build/lib/nmdc_runtime/minter/domain 2023-11-27T19:40:08,042 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-27T19:40:08,044 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-27T19:40:08,046 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,047 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,048 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,050 creating build/lib/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,051 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,053 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,055 creating build/lib/nmdc_runtime/site/backup 2023-11-27T19:40:08,056 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-27T19:40:08,059 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-27T19:40:08,060 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-27T19:40:08,062 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-27T19:40:08,064 creating build/lib/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,065 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,067 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,069 creating build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,070 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,072 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,073 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,075 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,077 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-27T19:40:08,079 creating build/lib/nmdc_runtime/site/normalization 2023-11-27T19:40:08,080 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-27T19:40:08,082 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-27T19:40:08,083 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,084 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,086 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,087 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,089 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,090 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,092 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,094 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,097 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,100 creating build/lib/nmdc_runtime/site/export 2023-11-27T19:40:08,101 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-27T19:40:08,103 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-27T19:40:08,105 creating build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,106 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,109 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,111 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,113 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,115 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,118 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,120 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,123 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,125 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-27T19:40:08,128 creating build/lib/nmdc_runtime/core/db 2023-11-27T19:40:08,129 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-27T19:40:08,131 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-27T19:40:08,134 creating build/lib/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,135 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,137 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,139 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,187 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-27T19:40:08,188 !! 2023-11-27T19:40:08,189 ******************************************************************************** 2023-11-27T19:40:08,190 Please avoid running ``setup.py`` directly. 2023-11-27T19:40:08,190 Instead, use pypa/build, pypa/installer or other 2023-11-27T19:40:08,191 standards-based tools. 2023-11-27T19:40:08,192 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-27T19:40:08,193 ******************************************************************************** 2023-11-27T19:40:08,194 !! 2023-11-27T19:40:08,194 self.initialize_options() 2023-11-27T19:40:08,219 installing to build/bdist.linux-armv7l/wheel 2023-11-27T19:40:08,220 running install 2023-11-27T19:40:08,244 running install_lib 2023-11-27T19:40:08,272 creating build/bdist.linux-armv7l 2023-11-27T19:40:08,273 creating build/bdist.linux-armv7l/wheel 2023-11-27T19:40:08,274 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-27T19:40:08,276 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,277 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,279 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,281 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,283 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,286 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,288 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-11-27T19:40:08,292 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-27T19:40:08,293 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,294 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,296 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-11-27T19:40:08,298 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,299 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,301 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-11-27T19:40:08,302 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-11-27T19:40:08,304 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-27T19:40:08,305 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-27T19:40:08,307 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-27T19:40:08,308 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-27T19:40:08,310 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-27T19:40:08,312 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-11-27T19:40:08,313 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-11-27T19:40:08,315 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-27T19:40:08,317 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-27T19:40:08,319 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-27T19:40:08,319 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-11-27T19:40:08,322 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-27T19:40:08,322 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-27T19:40:08,325 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-27T19:40:08,326 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-27T19:40:08,327 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-11-27T19:40:08,329 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,330 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,332 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-11-27T19:40:08,334 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-27T19:40:08,335 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-11-27T19:40:08,337 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,338 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,341 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-11-27T19:40:08,342 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-27T19:40:08,345 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,347 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-27T19:40:08,347 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-27T19:40:08,350 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-27T19:40:08,351 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-27T19:40:08,353 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-11-27T19:40:08,355 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,357 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,360 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,361 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,362 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-11-27T19:40:08,364 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,366 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,367 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,369 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,370 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,372 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,374 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-11-27T19:40:08,376 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,379 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-27T19:40:08,379 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-27T19:40:08,381 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-11-27T19:40:08,383 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,384 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,385 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,387 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-11-27T19:40:08,389 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,390 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-11-27T19:40:08,393 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,394 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,395 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,397 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,401 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-11-27T19:40:08,403 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-27T19:40:08,404 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-27T19:40:08,405 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-11-27T19:40:08,408 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,408 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,411 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,413 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,414 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,416 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,419 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,421 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,424 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,425 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-11-27T19:40:08,427 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-11-27T19:40:08,429 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-27T19:40:08,430 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-11-27T19:40:08,432 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-27T19:40:08,433 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-27T19:40:08,435 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-11-27T19:40:08,437 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,437 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,439 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,441 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-11-27T19:40:08,442 running install_egg_info 2023-11-27T19:40:08,496 running egg_info 2023-11-27T19:40:08,521 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-27T19:40:08,525 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-27T19:40:08,526 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-27T19:40:08,528 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-27T19:40:08,632 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-27T19:40:08,635 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-27T19:40:08,694 adding license file 'LICENSE' 2023-11-27T19:40:08,710 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-27T19:40:08,713 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.12-py3.11.egg-info 2023-11-27T19:40:08,723 running install_scripts 2023-11-27T19:40:08,736 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.12.dist-info/WHEEL 2023-11-27T19:40:08,739 creating '/tmp/pip-wheel-az56cfxk/nmdc_runtime-1.0.12-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-11-27T19:40:08,741 adding 'nmdc_runtime/__init__.py' 2023-11-27T19:40:08,742 adding 'nmdc_runtime/containers.py' 2023-11-27T19:40:08,744 adding 'nmdc_runtime/main.py' 2023-11-27T19:40:08,747 adding 'nmdc_runtime/util.py' 2023-11-27T19:40:08,748 adding 'nmdc_runtime/client/__init__.py' 2023-11-27T19:40:08,750 adding 'nmdc_runtime/core/__init__.py' 2023-11-27T19:40:08,752 adding 'nmdc_runtime/core/db/Database.py' 2023-11-27T19:40:08,753 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-27T19:40:08,754 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-27T19:40:08,755 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-27T19:40:08,757 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-27T19:40:08,759 adding 'nmdc_runtime/domain/__init__.py' 2023-11-27T19:40:08,760 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-27T19:40:08,761 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-27T19:40:08,762 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-27T19:40:08,764 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-27T19:40:08,765 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-27T19:40:08,767 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-27T19:40:08,768 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-27T19:40:08,770 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-27T19:40:08,771 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-27T19:40:08,772 adding 'nmdc_runtime/lib/__init__.py' 2023-11-27T19:40:08,774 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-27T19:40:08,775 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-27T19:40:08,778 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-27T19:40:08,780 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-27T19:40:08,786 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-27T19:40:08,788 adding 'nmdc_runtime/minter/__init__.py' 2023-11-27T19:40:08,789 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-27T19:40:08,790 adding 'nmdc_runtime/minter/config.py' 2023-11-27T19:40:08,792 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-27T19:40:08,793 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-27T19:40:08,795 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-27T19:40:08,796 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-27T19:40:08,797 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-27T19:40:08,799 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-27T19:40:08,800 adding 'nmdc_runtime/site/__init__.py' 2023-11-27T19:40:08,802 adding 'nmdc_runtime/site/graphs.py' 2023-11-27T19:40:08,805 adding 'nmdc_runtime/site/ops.py' 2023-11-27T19:40:08,808 adding 'nmdc_runtime/site/repository.py' 2023-11-27T19:40:08,810 adding 'nmdc_runtime/site/resources.py' 2023-11-27T19:40:08,811 adding 'nmdc_runtime/site/util.py' 2023-11-27T19:40:08,813 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-27T19:40:08,814 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-27T19:40:08,815 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-27T19:40:08,817 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-27T19:40:08,818 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-27T19:40:08,819 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-27T19:40:08,821 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-27T19:40:08,822 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-27T19:40:08,823 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-27T19:40:08,825 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-27T19:40:08,826 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-27T19:40:08,828 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-27T19:40:08,829 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-27T19:40:08,831 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-27T19:40:08,832 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-27T19:40:08,833 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-27T19:40:08,841 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-27T19:40:08,843 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-27T19:40:08,845 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-27T19:40:08,846 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-27T19:40:08,849 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-27T19:40:08,850 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-27T19:40:08,854 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-27T19:40:08,857 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-27T19:40:08,859 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-27T19:40:08,860 adding 'nmdc_runtime/site/translation/util.py' 2023-11-27T19:40:08,862 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-27T19:40:08,863 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-27T19:40:08,864 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-27T19:40:08,865 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-27T19:40:08,867 adding 'nmdc_runtime/site/validation/util.py' 2023-11-27T19:40:08,869 adding 'nmdc_runtime-1.0.12.dist-info/LICENSE' 2023-11-27T19:40:08,870 adding 'nmdc_runtime-1.0.12.dist-info/METADATA' 2023-11-27T19:40:08,872 adding 'nmdc_runtime-1.0.12.dist-info/WHEEL' 2023-11-27T19:40:08,873 adding 'nmdc_runtime-1.0.12.dist-info/entry_points.txt' 2023-11-27T19:40:08,873 adding 'nmdc_runtime-1.0.12.dist-info/top_level.txt' 2023-11-27T19:40:08,875 adding 'nmdc_runtime-1.0.12.dist-info/RECORD' 2023-11-27T19:40:08,878 removing build/bdist.linux-armv7l/wheel 2023-11-27T19:40:09,015 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-27T19:40:09,018 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.12-py3-none-any.whl size=121447 sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc 2023-11-27T19:40:09,020 Stored in directory: /tmp/pip-ephem-wheel-cache-xv5axwkg/wheels/8f/df/59/f9843e06450bde3877ccfa5c5b5ae3a10bd6836a7e65618651 2023-11-27T19:40:09,033 Successfully built nmdc-runtime 2023-11-27T19:40:09,039 Removed build tracker: '/tmp/pip-build-tracker-o0nqqca0'