2023-11-28T21:28:45,431 Created temporary directory: /tmp/pip-build-tracker-l53qe4c3 2023-11-28T21:28:45,432 Initialized build tracking at /tmp/pip-build-tracker-l53qe4c3 2023-11-28T21:28:45,432 Created build tracker: /tmp/pip-build-tracker-l53qe4c3 2023-11-28T21:28:45,433 Entered build tracker: /tmp/pip-build-tracker-l53qe4c3 2023-11-28T21:28:45,434 Created temporary directory: /tmp/pip-wheel-qbwplmit 2023-11-28T21:28:45,437 Created temporary directory: /tmp/pip-ephem-wheel-cache-oiqeq7f6 2023-11-28T21:28:45,462 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-28T21:28:45,466 2 location(s) to search for versions of cnv-from-bam: 2023-11-28T21:28:45,466 * https://pypi.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,466 * https://www.piwheels.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,467 Fetching project page and analyzing links: https://pypi.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,467 Getting page https://pypi.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,469 Found index url https://pypi.org/simple/ 2023-11-28T21:28:45,723 Fetched page https://pypi.org/simple/cnv-from-bam/ as application/vnd.pypi.simple.v1+json 2023-11-28T21:28:45,728 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/c5/0a/d2ac9de1457eb93e6d9465e707487e9d4e15775b3f515a88c62a6a693cfe/cnv_from_bam-0.1.0-cp310-cp310-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,729 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/fa/a2/e5bc3eb02390284e20550e62987c1c284fb96a6a1ec3360233fa88b2a1ec/cnv_from_bam-0.1.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,730 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/c5/56/4a24e724db402472d8ce38fd3f77fc44364351050ebf43d451f32934119c/cnv_from_bam-0.1.0-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,730 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/d9/b1/a883cf8e27bc152de54fe46d8e8b19bdcc1f39f11f8ae85d5cffb0b18b57/cnv_from_bam-0.1.0-cp311-cp311-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,731 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/f8/4a/40e808e0b644530b1cc6a08eb38747ff350e793eb44f936b8c4155c62dd8/cnv_from_bam-0.1.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,732 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/42/cf/f15c259a97bab6d11c0fda06c286af96df640eaae3cf38046598d55a9134/cnv_from_bam-0.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,732 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/a2/bf/c9ae8fdd006baee267fd6a4d8dd633d79c4f3a15306bb155f9d9b9a6fc71/cnv_from_bam-0.1.0-cp312-cp312-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,733 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/1c/4b/90fa9bc7f4126864cac96f247731f67592f8f529cd8dc2d6fa7a97616ccb/cnv_from_bam-0.1.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,734 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/3f/02/0e21c64e6f9cc8fb913fe911b9b52ca7cf4d21545a3d3a380d283d300018/cnv_from_bam-0.1.0-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,734 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/e4/f2/4bf27050d964273c986274592f25d91a3365e38bb37eeb2577aee25687ad/cnv_from_bam-0.1.0-cp38-cp38-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,735 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/33/83/15076c66b73813f00eac06ca32c70e59ba8f78a1004d25f33a8077c2134a/cnv_from_bam-0.1.0-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,736 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/ed/85/fc38e3c81e78ef5a659a91f559dcc4d55215380b6d7c3f027f8f9efd1925/cnv_from_bam-0.1.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,736 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/13/41/ffbf493826c440ab8579c07ad756435c1692b8f479673ae697ea3f26d8d3/cnv_from_bam-0.1.0-cp39-cp39-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,737 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/3e/fc/610fa5cdd6ddd9e8fc6038a6509946dc949100dbfb35c8d9b030017821c4/cnv_from_bam-0.1.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,737 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/0b/12/2fdff180791b208661d0bed57914485c0223ea57793310ea9d5e6dbb313c/cnv_from_bam-0.1.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,738 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/62/29/500ef588ec6541019c87130691e93e938a1fc5e95d438e8e767203bcd5ea/cnv_from_bam-0.1.0-pp310-pypy310_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,738 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/24/e1/0bcad9bd1317e6572e02fae95176815bcf16627a6f1b8c19fa33cadbd0dd/cnv_from_bam-0.1.0-pp310-pypy310_pp73-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,739 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/8d/34/8d4a2f25d8cbfdd7d7431e54f7acafdddd5112f9988627cf0c9b93edc2a1/cnv_from_bam-0.1.0-pp310-pypy310_pp73-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,740 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/c5/ed/a439766d6a5917c7c0af3e2745d25e6c78656c3c11cc1107876969e87d57/cnv_from_bam-0.1.0-pp38-pypy38_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,740 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/aa/94/d9aaffe071389801e76c8311cc5a6af30226afe1390e8ba905ef1161de6f/cnv_from_bam-0.1.0-pp38-pypy38_pp73-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,741 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/39/53/49fcbfe997fe646f57467643ed52a9716d4c688467e23b535948547d206e/cnv_from_bam-0.1.0-pp38-pypy38_pp73-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,742 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/f2/eb/cb64944ef575b2e660c20def852ea3b81bdd6a1cb3adb4c17b9dca5eb599/cnv_from_bam-0.1.0-pp39-pypy39_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,742 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/7a/5f/0d594901890ee2305a7f33dea8a357dbc943d425afad6e1725f8fbb6b124/cnv_from_bam-0.1.0-pp39-pypy39_pp73-macosx_11_0_arm64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,743 Skipping link: No binaries permitted for cnv-from-bam: https://files.pythonhosted.org/packages/e5/4f/104c832ced23d87b5352192da6b82e18f8a5f01d41bd51be45e72c2943f4/cnv_from_bam-0.1.0-pp39-pypy39_pp73-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8) 2023-11-28T21:28:45,744 Found link https://files.pythonhosted.org/packages/cd/bc/e846c52e1fc0778475bb52a9b3df3de1958cb6bb275b048c8f15b514f721/cnv_from_bam-0.1.0.tar.gz (from https://pypi.org/simple/cnv-from-bam/) (requires-python:>=3.8), version: 0.1.0 2023-11-28T21:28:45,745 Fetching project page and analyzing links: https://www.piwheels.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,746 Getting page https://www.piwheels.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,747 Found index url https://www.piwheels.org/simple/ 2023-11-28T21:28:45,912 Fetched page https://www.piwheels.org/simple/cnv-from-bam/ as text/html 2023-11-28T21:28:45,914 Skipping link: not a file: https://www.piwheels.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,914 Skipping link: not a file: https://pypi.org/simple/cnv-from-bam/ 2023-11-28T21:28:45,934 Given no hashes to check 1 links for project 'cnv-from-bam': discarding no candidates 2023-11-28T21:28:45,954 Collecting cnv-from-bam==0.1.0 2023-11-28T21:28:45,956 Created temporary directory: /tmp/pip-unpack-bc6glazw 2023-11-28T21:28:46,179 Downloading cnv_from_bam-0.1.0.tar.gz (516 kB) 2023-11-28T21:28:46,330 Added cnv-from-bam==0.1.0 from https://files.pythonhosted.org/packages/cd/bc/e846c52e1fc0778475bb52a9b3df3de1958cb6bb275b048c8f15b514f721/cnv_from_bam-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-l53qe4c3' 2023-11-28T21:28:46,335 Created temporary directory: /tmp/pip-build-env-wef90fqa 2023-11-28T21:28:46,340 Installing build dependencies: started 2023-11-28T21:28:46,341 Running command pip subprocess to install build dependencies 2023-11-28T21:28:47,573 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-28T21:28:48,118 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-28T21:28:49,193 Collecting maturin<2.0,>=1.3 2023-11-28T21:28:49,209 Using cached https://www.piwheels.org/simple/maturin/maturin-1.3.2-cp311-cp311-linux_armv7l.whl (6.1 MB) 2023-11-28T21:28:51,706 Installing collected packages: maturin 2023-11-28T21:28:52,264 Successfully installed maturin-1.3.2 2023-11-28T21:28:52,875 Installing build dependencies: finished with status 'done' 2023-11-28T21:28:52,879 Getting requirements to build wheel: started 2023-11-28T21:28:52,880 Running command Getting requirements to build wheel 2023-11-28T21:28:53,089 Getting requirements to build wheel: finished with status 'done' 2023-11-28T21:28:53,092 Created temporary directory: /tmp/pip-modern-metadata-kpeubn_h 2023-11-28T21:28:53,095 Preparing metadata (pyproject.toml): started 2023-11-28T21:28:53,096 Running command Preparing metadata (pyproject.toml) 2023-11-28T21:28:53,691 Updating crates.io index 2023-11-28T21:28:55,775 Downloading crates ... 2023-11-28T21:28:56,416 Downloaded bio-types v1.0.1 2023-11-28T21:28:56,456 Downloaded libz-sys v1.1.12 2023-11-28T21:28:57,617 Downloaded semver v0.1.20 2023-11-28T21:28:57,636 Downloaded rustc_version v0.1.7 2023-11-28T21:28:57,650 Downloaded rust-htslib v0.44.1 2023-11-28T21:28:57,720 Downloaded hts-sys v2.1.1 2023-11-28T21:28:59,141 Downloaded derive-new v0.5.9 2023-11-28T21:28:59,159 Downloaded custom_derive v0.1.7 2023-11-28T21:28:59,179 Downloaded number_prefix v0.4.0 2023-11-28T21:28:59,195 Downloaded strum_macros v0.25.3 2023-11-28T21:28:59,236 Downloaded portable-atomic v1.5.1 2023-11-28T21:28:59,344 Downloaded unicode-width v0.1.11 2023-11-28T21:28:59,374 Downloaded quick-error v1.2.3 2023-11-28T21:28:59,397 Downloaded newtype_derive v0.1.6 2023-11-28T21:28:59,418 Downloaded linear-map v1.2.0 2023-11-28T21:28:59,445 Downloaded libdeflate-sys v0.7.5 2023-11-28T21:28:59,591 Downloaded indicatif v0.17.7 2023-11-28T21:28:59,659 Downloaded ieee754 v0.2.6 2023-11-28T21:28:59,692 Downloaded fs-utils v1.1.4 2023-11-28T21:28:59,751 🔗 Found pyo3 bindings 2023-11-28T21:29:00,035 🐍 Found CPython 3.11 at /usr/bin/python3 2023-11-28T21:29:00,036 📡 Using build options features from pyproject.toml 2023-11-28T21:29:00,046 cnv_from_bam-0.1.0.dist-info 2023-11-28T21:29:00,046 Checking for Rust toolchain.... 2023-11-28T21:29:00,047 Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-kpeubn_h --interpreter /usr/bin/python3` 2023-11-28T21:29:00,070 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-28T21:29:00,075 Source in /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0 has version 0.1.0, which satisfies requirement cnv-from-bam==0.1.0 from https://files.pythonhosted.org/packages/cd/bc/e846c52e1fc0778475bb52a9b3df3de1958cb6bb275b048c8f15b514f721/cnv_from_bam-0.1.0.tar.gz 2023-11-28T21:29:00,076 Removed cnv-from-bam==0.1.0 from https://files.pythonhosted.org/packages/cd/bc/e846c52e1fc0778475bb52a9b3df3de1958cb6bb275b048c8f15b514f721/cnv_from_bam-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-l53qe4c3' 2023-11-28T21:29:00,082 Created temporary directory: /tmp/pip-unpack-ls4cfo54 2023-11-28T21:29:00,083 Created temporary directory: /tmp/pip-unpack-xynrtrtq 2023-11-28T21:29:00,095 Building wheels for collected packages: cnv-from-bam 2023-11-28T21:29:00,100 Created temporary directory: /tmp/pip-wheel-0cl8lwci 2023-11-28T21:29:00,101 Destination directory: /tmp/pip-wheel-0cl8lwci 2023-11-28T21:29:00,103 Building wheel for cnv-from-bam (pyproject.toml): started 2023-11-28T21:29:00,104 Running command Building wheel for cnv-from-bam (pyproject.toml) 2023-11-28T21:29:00,294 Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off` 2023-11-28T21:29:00,848 🔗 Found pyo3 bindings 2023-11-28T21:29:01,129 🐍 Found CPython 3.11 at /usr/bin/python3 2023-11-28T21:29:01,130 📡 Using build options features from pyproject.toml 2023-11-28T21:29:01,789 Compiling libc v0.2.150 2023-11-28T21:29:01,790 Compiling autocfg v1.1.0 2023-11-28T21:29:01,791 Compiling proc-macro2 v1.0.69 2023-11-28T21:29:01,792 Compiling unicode-ident v1.0.12 2023-11-28T21:29:02,261 Compiling target-lexicon v0.12.12 2023-11-28T21:29:07,168 Compiling cfg-if v1.0.0 2023-11-28T21:29:07,305 Compiling memoffset v0.9.0 2023-11-28T21:29:10,613 Compiling quote v1.0.33 2023-11-28T21:29:13,153 Compiling syn v2.0.39 2023-11-28T21:29:13,173 Compiling pyo3-build-config v0.20.0 2023-11-28T21:29:16,063 Compiling jobserver v0.1.27 2023-11-28T21:29:16,329 Compiling scopeguard v1.2.0 2023-11-28T21:29:16,770 Compiling crossbeam-utils v0.8.16 2023-11-28T21:29:18,309 Compiling cc v1.0.83 2023-11-28T21:29:19,511 Compiling once_cell v1.18.0 2023-11-28T21:29:21,169 Compiling crossbeam-epoch v0.9.15 2023-11-28T21:29:22,602 Compiling heck v0.4.1 2023-11-28T21:29:23,935 Compiling cmake v0.1.50 2023-11-28T21:29:27,166 Compiling pkg-config v0.3.27 2023-11-28T21:29:28,938 Compiling vcpkg v0.2.15 2023-11-28T21:29:30,855 Compiling libdeflate-sys v0.7.5 2023-11-28T21:29:32,601 Compiling syn v1.0.109 2023-11-28T21:29:34,333 Compiling semver v0.1.20 2023-11-28T21:29:36,693 Compiling tinyvec_macros v0.1.1 2023-11-28T21:29:36,773 Compiling libz-sys v1.1.12 2023-11-28T21:29:36,826 Compiling memchr v2.6.4 2023-11-28T21:29:37,418 Compiling rustversion v1.0.14 2023-11-28T21:29:39,532 Compiling quick-error v1.2.3 2023-11-28T21:29:39,847 Compiling fs-utils v1.1.4 2023-11-28T21:29:40,919 Compiling aho-corasick v1.1.2 2023-11-28T21:29:42,583 Compiling tinyvec v1.6.0 2023-11-28T21:29:50,522 Compiling rustc_version v0.1.7 2023-11-28T21:29:56,294 Compiling pyo3-ffi v0.20.0 2023-11-28T21:29:57,952 Compiling lock_api v0.4.11 2023-11-28T21:29:59,035 Compiling lazy_static v1.4.0 2023-11-28T21:29:59,301 Compiling regex-syntax v0.8.2 2023-11-28T21:30:05,963 Compiling rayon-core v1.12.0 2023-11-28T21:30:06,927 Compiling thiserror v1.0.50 2023-11-28T21:30:08,464 Compiling glob v0.3.1 2023-11-28T21:30:11,925 Compiling parking_lot_core v0.9.9 2023-11-28T21:30:13,207 Compiling hts-sys v2.1.1 2023-11-28T21:30:14,363 Compiling thiserror-impl v1.0.50 2023-11-28T21:30:16,695 Compiling regex-automata v0.4.3 2023-11-28T21:30:33,045 Compiling crossbeam-deque v0.8.3 2023-11-28T21:30:34,396 Compiling newtype_derive v0.1.6 2023-11-28T21:30:35,548 Compiling unicode-normalization v0.1.22 2023-11-28T21:30:45,874 Compiling portable-atomic v1.5.1 2023-11-28T21:30:47,410 Compiling unicode-bidi v0.3.13 2023-11-28T21:30:49,489 Compiling smallvec v1.11.2 2023-11-28T21:30:51,465 Compiling percent-encoding v2.3.1 2023-11-28T21:30:52,840 Compiling form_urlencoded v1.2.1 2023-11-28T21:30:56,474 Compiling idna v0.5.0 2023-11-28T21:30:58,065 Compiling derive-new v0.5.9 2023-11-28T21:30:59,076 Compiling strum_macros v0.25.3 2023-11-28T21:31:02,975 Compiling regex v1.10.2 2023-11-28T21:31:16,135 Compiling pyo3-macros-backend v0.20.0 2023-11-28T21:31:17,391 Compiling pyo3 v0.20.0 2023-11-28T21:31:19,552 Compiling either v1.9.0 2023-11-28T21:31:20,516 Compiling unicode-width v0.1.11 2023-11-28T21:31:20,886 Compiling console v0.15.7 2023-11-28T21:31:21,138 Compiling bio-types v1.0.1 2023-11-28T21:31:28,070 Compiling rayon v1.8.0 2023-11-28T21:31:29,601 Compiling parking_lot v0.12.1 2023-11-28T21:31:35,979 Compiling url v2.5.0 2023-11-28T21:31:50,396 Compiling linear-map v1.2.0 2023-11-28T21:31:51,393 Compiling byteorder v1.5.0 2023-11-28T21:31:51,740 Compiling pyo3-macros v0.20.0 2023-11-28T21:31:51,992 Compiling custom_derive v0.1.7 2023-11-28T21:31:52,134 Compiling unindent v0.2.3 2023-11-28T21:31:53,347 Compiling number_prefix v0.4.0 2023-11-28T21:31:53,619 Compiling indoc v2.0.4 2023-11-28T21:31:53,923 Compiling ieee754 v0.2.6 2023-11-28T21:31:54,569 Compiling num_cpus v1.16.0 2023-11-28T21:31:56,404 Compiling indicatif v0.17.7 2023-11-28T21:31:57,568 Compiling fnv v1.0.7 2023-11-28T21:33:09,287 Compiling rust-htslib v0.44.1 2023-11-28T21:33:10,934 error[E0308]: mismatched types 2023-11-28T21:33:10,935 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:154:16 2023-11-28T21:33:10,936 | 2023-11-28T21:33:10,937 154 | l: sam_copy.len() as u64, 2023-11-28T21:33:10,938 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:10,946 error[E0308]: mismatched types 2023-11-28T21:33:10,947 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:155:16 2023-11-28T21:33:10,948 | 2023-11-28T21:33:10,949 155 | m: sam_copy.len() as u64, 2023-11-28T21:33:10,950 | ^^^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:11,337 error[E0308]: mismatched types 2023-11-28T21:33:11,338 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/record.rs:2324:17 2023-11-28T21:33:11,338 | 2023-11-28T21:33:11,339 2319 | let ret = hts_sys::bam_mods_query_type( 2023-11-28T21:33:11,340 | ---------------------------- arguments to this function are incorrect 2023-11-28T21:33:11,341 ... 2023-11-28T21:33:11,342 2324 | &mut canonical, 2023-11-28T21:33:11,343 | ^^^^^^^^^^^^^^ expected `*mut u8`, found `&mut i8` 2023-11-28T21:33:11,344 | 2023-11-28T21:33:11,345 = note: expected raw pointer `*mut u8` 2023-11-28T21:33:11,346 found mutable reference `&mut i8` 2023-11-28T21:33:11,346 note: function defined here 2023-11-28T21:33:11,348 --> /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/target/release/build/hts-sys-77682420936d9a16/out/bindings.rs:9439:12 2023-11-28T21:33:11,348 | 2023-11-28T21:33:11,349 9439 | pub fn bam_mods_query_type( 2023-11-28T21:33:11,350 | ^^^^^^^^^^^^^^^^^^^ 2023-11-28T21:33:11,516 error[E0308]: mismatched types 2023-11-28T21:33:11,517 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1128:29 2023-11-28T21:33:11,518 | 2023-11-28T21:33:11,519 1128 | (*rec).l_text = l_text as u64; 2023-11-28T21:33:11,519 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:11,520 | | 2023-11-28T21:33:11,521 | expected due to the type of this binding 2023-11-28T21:33:11,559 error[E0308]: mismatched types 2023-11-28T21:33:11,560 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1393:45 2023-11-28T21:33:11,561 | 2023-11-28T21:33:11,561 1393 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const c_char); 2023-11-28T21:33:11,562 | --------------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:11,562 | | 2023-11-28T21:33:11,563 | arguments to this function are incorrect 2023-11-28T21:33:11,564 | 2023-11-28T21:33:11,564 note: function defined here 2023-11-28T21:33:11,565 --> /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/target/release/build/hts-sys-77682420936d9a16/out/bindings.rs:8520:12 2023-11-28T21:33:11,566 | 2023-11-28T21:33:11,567 8520 | pub fn sam_hdr_parse(l_text: size_t, text: *const ::std::os::raw::c_char) -> *mut sam_hdr_t; 2023-11-28T21:33:11,568 | ^^^^^^^^^^^^^ 2023-11-28T21:33:11,569 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-11-28T21:33:11,569 | 2023-11-28T21:33:11,570 1393 | let rec = htslib::sam_hdr_parse(((l_text + 1) as u64).try_into().unwrap(), text as *const c_char); 2023-11-28T21:33:11,571 | + +++++++++++++++++++++ 2023-11-28T21:33:11,573 error[E0308]: mismatched types 2023-11-28T21:33:11,574 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bam/mod.rs:1395:29 2023-11-28T21:33:11,575 | 2023-11-28T21:33:11,576 1395 | (*rec).l_text = l_text as u64; 2023-11-28T21:33:11,577 | ------------- ^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:11,578 | | 2023-11-28T21:33:11,579 | expected due to the type of this binding 2023-11-28T21:33:11,818 error[E0308]: mismatched types 2023-11-28T21:33:11,819 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bcf/record.rs:1011:48 2023-11-28T21:33:11,820 | 2023-11-28T21:33:11,821 1011 | let rm_set = unsafe { htslib::kbs_init(remove.len() as u64) }; 2023-11-28T21:33:11,822 | ---------------- ^^^^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:11,822 | | 2023-11-28T21:33:11,823 | arguments to this function are incorrect 2023-11-28T21:33:11,824 | 2023-11-28T21:33:11,825 note: function defined here 2023-11-28T21:33:11,826 --> /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/target/release/build/hts-sys-77682420936d9a16/out/bindings.rs:11642:12 2023-11-28T21:33:11,827 | 2023-11-28T21:33:11,828 11642 | pub fn kbs_init(ni: size_t) -> *mut kbitset_t; 2023-11-28T21:33:11,829 | ^^^^^^^^ 2023-11-28T21:33:11,830 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-11-28T21:33:11,831 | 2023-11-28T21:33:11,831 1011 | let rm_set = unsafe { htslib::kbs_init((remove.len() as u64).try_into().unwrap()) }; 2023-11-28T21:33:11,832 | + +++++++++++++++++++++ 2023-11-28T21:33:12,049 error[E0308]: mismatched types 2023-11-28T21:33:12,050 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:118:17 2023-11-28T21:33:12,051 | 2023-11-28T21:33:12,052 115 | htslib::bgzf_read( 2023-11-28T21:33:12,052 | ----------------- arguments to this function are incorrect 2023-11-28T21:33:12,053 ... 2023-11-28T21:33:12,054 118 | buf.len() as u64, 2023-11-28T21:33:12,054 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:12,055 | 2023-11-28T21:33:12,056 note: function defined here 2023-11-28T21:33:12,056 --> /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/target/release/build/hts-sys-77682420936d9a16/out/bindings.rs:10097:12 2023-11-28T21:33:12,057 | 2023-11-28T21:33:12,058 10097 | pub fn bgzf_read(fp: *mut BGZF, data: *mut ::std::os::raw::c_void, length: size_t) -> ssize_t; 2023-11-28T21:33:12,058 | ^^^^^^^^^ 2023-11-28T21:33:12,059 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-11-28T21:33:12,060 | 2023-11-28T21:33:12,061 118 | (buf.len() as u64).try_into().unwrap(), 2023-11-28T21:33:12,061 | + +++++++++++++++++++++ 2023-11-28T21:33:12,081 error[E0308]: mismatched types 2023-11-28T21:33:12,082 --> /home/piwheels/.cargo/registry/src/index.crates.io-1cd66030c949c28d/rust-htslib-0.44.1/src/bgzf/mod.rs:264:17 2023-11-28T21:33:12,083 | 2023-11-28T21:33:12,084 261 | htslib::bgzf_write( 2023-11-28T21:33:12,085 | ------------------ arguments to this function are incorrect 2023-11-28T21:33:12,085 ... 2023-11-28T21:33:12,086 264 | buf.len() as u64, 2023-11-28T21:33:12,087 | ^^^^^^^^^^^^^^^^ expected `u32`, found `u64` 2023-11-28T21:33:12,088 | 2023-11-28T21:33:12,089 note: function defined here 2023-11-28T21:33:12,090 --> /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/target/release/build/hts-sys-77682420936d9a16/out/bindings.rs:10100:12 2023-11-28T21:33:12,091 | 2023-11-28T21:33:12,092 10100 | pub fn bgzf_write( 2023-11-28T21:33:12,093 | ^^^^^^^^^^ 2023-11-28T21:33:12,094 help: you can convert a `u64` to a `u32` and panic if the converted value doesn't fit 2023-11-28T21:33:12,094 | 2023-11-28T21:33:12,095 264 | (buf.len() as u64).try_into().unwrap(), 2023-11-28T21:33:12,096 | + +++++++++++++++++++++ 2023-11-28T21:33:12,260 For more information about this error, try `rustc --explain E0308`. 2023-11-28T21:33:12,278 error: could not compile `rust-htslib` (lib) due to 9 previous errors 2023-11-28T21:33:12,290 💥 maturin failed 2023-11-28T21:33:12,291 Caused by: Failed to build a native library through cargo 2023-11-28T21:33:12,293 Caused by: Cargo build finished with "exit status: 101": `PYO3_ENVIRONMENT_SIGNATURE="cpython-3.11-64bit" PYO3_PYTHON="/usr/bin/python3" PYTHON_SYS_EXECUTABLE="/usr/bin/python3" "cargo" "rustc" "--features" "pyo3/extension-module" "--message-format" "json-render-diagnostics" "--manifest-path" "/tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0/Cargo.toml" "--release" "--lib" "--crate-type" "cdylib"` 2023-11-28T21:33:12,294 Error: command ['maturin', 'pep517', 'build-wheel', '-i', '/usr/bin/python3', '--compatibility', 'off'] returned non-zero exit status 1 2023-11-28T21:33:12,316 ERROR: Building wheel for cnv-from-bam (pyproject.toml) exited with 1 2023-11-28T21:33:12,329 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpzbtg3ce3[/] 2023-11-28T21:33:12,330 [bold magenta]cwd[/]: /tmp/pip-wheel-qbwplmit/cnv-from-bam_93222b1b6b2d406b97d74d60b63d7ba0 2023-11-28T21:33:12,330 Building wheel for cnv-from-bam (pyproject.toml): finished with status 'error' 2023-11-28T21:33:12,333 ERROR: Failed building wheel for cnv-from-bam 2023-11-28T21:33:12,336 Failed to build cnv-from-bam 2023-11-28T21:33:12,337 ERROR: Failed to build one or more wheels 2023-11-28T21:33:12,339 Exception information: 2023-11-28T21:33:12,339 Traceback (most recent call last): 2023-11-28T21:33:12,339 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-11-28T21:33:12,339 status = run_func(*args) 2023-11-28T21:33:12,339 ^^^^^^^^^^^^^^^ 2023-11-28T21:33:12,339 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2023-11-28T21:33:12,339 return func(self, options, args) 2023-11-28T21:33:12,339 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2023-11-28T21:33:12,339 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-11-28T21:33:12,339 raise CommandError("Failed to build one or more wheels") 2023-11-28T21:33:12,339 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-11-28T21:33:12,347 Removed build tracker: '/tmp/pip-build-tracker-l53qe4c3'