2023-11-29T12:03:00,310 Created temporary directory: /tmp/pip-build-tracker-h1xhrtty
2023-11-29T12:03:00,311 Initialized build tracking at /tmp/pip-build-tracker-h1xhrtty
2023-11-29T12:03:00,312 Created build tracker: /tmp/pip-build-tracker-h1xhrtty
2023-11-29T12:03:00,313 Entered build tracker: /tmp/pip-build-tracker-h1xhrtty
2023-11-29T12:03:00,313 Created temporary directory: /tmp/pip-wheel-lpr1h1nq
2023-11-29T12:03:00,317 Created temporary directory: /tmp/pip-ephem-wheel-cache-hyjtyngy
2023-11-29T12:03:00,341 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-11-29T12:03:00,344 2 location(s) to search for versions of kegg2bipartitegraph:
2023-11-29T12:03:00,344 * https://pypi.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,344 * https://www.piwheels.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,345 Fetching project page and analyzing links: https://pypi.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,346 Getting page https://pypi.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,348 Found index url https://pypi.org/simple/
2023-11-29T12:03:00,560 Fetched page https://pypi.org/simple/kegg2bipartitegraph/ as application/vnd.pypi.simple.v1+json
2023-11-29T12:03:00,562   Skipping link: No binaries permitted for kegg2bipartitegraph: https://files.pythonhosted.org/packages/fa/f0/7c8a7cd8544284dc2b5f429bdb7ad1220023dc005df0ca98b6b90f681fed/kegg2bipartitegraph-0.0.1-py3-none-any.whl (from https://pypi.org/simple/kegg2bipartitegraph/)
2023-11-29T12:03:00,562   Found link https://files.pythonhosted.org/packages/e0/76/6dbe69ef48e5d079046fd2ef16183d5c1184ff5632824a5661f3568a2297/kegg2bipartitegraph-0.0.1.tar.gz (from https://pypi.org/simple/kegg2bipartitegraph/), version: 0.0.1
2023-11-29T12:03:00,563   Skipping link: No binaries permitted for kegg2bipartitegraph: https://files.pythonhosted.org/packages/99/98/c5d310cda928afb8c4c99faa27b3183a90dc5ae5481100c03ca9927132e3/kegg2bipartitegraph-0.0.2-py3-none-any.whl (from https://pypi.org/simple/kegg2bipartitegraph/)
2023-11-29T12:03:00,564   Found link https://files.pythonhosted.org/packages/1d/fe/0d208ef21ffff0d1e05ed2ea1e6a1c383f8203c98caa923d76bc98c415b5/kegg2bipartitegraph-0.0.2.tar.gz (from https://pypi.org/simple/kegg2bipartitegraph/), version: 0.0.2
2023-11-29T12:03:00,565 Fetching project page and analyzing links: https://www.piwheels.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,565 Getting page https://www.piwheels.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,567 Found index url https://www.piwheels.org/simple/
2023-11-29T12:03:00,721 Fetched page https://www.piwheels.org/simple/kegg2bipartitegraph/ as text/html
2023-11-29T12:03:00,722   Skipping link: No binaries permitted for kegg2bipartitegraph: https://www.piwheels.org/simple/kegg2bipartitegraph/kegg2bipartitegraph-0.0.1-py3-none-any.whl#sha256=928d8c7b74855e7631502f233b4e879b375ef89ac1f0cd32703636ee675360fd (from https://www.piwheels.org/simple/kegg2bipartitegraph/)
2023-11-29T12:03:00,723 Skipping link: not a file: https://www.piwheels.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,724 Skipping link: not a file: https://pypi.org/simple/kegg2bipartitegraph/
2023-11-29T12:03:00,744 Given no hashes to check 1 links for project 'kegg2bipartitegraph': discarding no candidates
2023-11-29T12:03:00,764 Collecting kegg2bipartitegraph==0.0.2
2023-11-29T12:03:00,766   Created temporary directory: /tmp/pip-unpack-mwopnkdl
2023-11-29T12:03:00,992   Downloading kegg2bipartitegraph-0.0.2.tar.gz (1.8 MB)
2023-11-29T12:03:02,207   Added kegg2bipartitegraph==0.0.2 from https://files.pythonhosted.org/packages/1d/fe/0d208ef21ffff0d1e05ed2ea1e6a1c383f8203c98caa923d76bc98c415b5/kegg2bipartitegraph-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-h1xhrtty'
2023-11-29T12:03:02,209   Running setup.py (path:/tmp/pip-wheel-lpr1h1nq/kegg2bipartitegraph_66469638172f4fe3a14b087c76c1e842/setup.py) egg_info for package kegg2bipartitegraph
2023-11-29T12:03:02,210   Created temporary directory: /tmp/pip-pip-egg-info-fyg2o_iz
2023-11-29T12:03:02,211   Preparing metadata (setup.py): started
2023-11-29T12:03:02,213   Running command python setup.py egg_info
2023-11-29T12:03:02,707   No `name` configuration, performing automatic discovery
2023-11-29T12:03:03,344   running egg_info
2023-11-29T12:03:03,346   creating /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info
2023-11-29T12:03:03,372   writing /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/PKG-INFO
2023-11-29T12:03:03,376   writing dependency_links to /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/dependency_links.txt
2023-11-29T12:03:03,378   writing entry points to /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/entry_points.txt
2023-11-29T12:03:03,379   writing requirements to /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/requires.txt
2023-11-29T12:03:03,380   writing top-level names to /tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/top_level.txt
2023-11-29T12:03:03,382   writing manifest file '/tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/SOURCES.txt'
2023-11-29T12:03:03,474   reading manifest file '/tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/SOURCES.txt'
2023-11-29T12:03:03,476   adding license file 'LICENSE'
2023-11-29T12:03:03,479   writing manifest file '/tmp/pip-pip-egg-info-fyg2o_iz/kegg2bipartitegraph.egg-info/SOURCES.txt'
2023-11-29T12:03:03,585   Preparing metadata (setup.py): finished with status 'done'
2023-11-29T12:03:03,590   Source in /tmp/pip-wheel-lpr1h1nq/kegg2bipartitegraph_66469638172f4fe3a14b087c76c1e842 has version 0.0.2, which satisfies requirement kegg2bipartitegraph==0.0.2 from https://files.pythonhosted.org/packages/1d/fe/0d208ef21ffff0d1e05ed2ea1e6a1c383f8203c98caa923d76bc98c415b5/kegg2bipartitegraph-0.0.2.tar.gz
2023-11-29T12:03:03,591   Removed kegg2bipartitegraph==0.0.2 from https://files.pythonhosted.org/packages/1d/fe/0d208ef21ffff0d1e05ed2ea1e6a1c383f8203c98caa923d76bc98c415b5/kegg2bipartitegraph-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-h1xhrtty'
2023-11-29T12:03:03,597 Created temporary directory: /tmp/pip-unpack-hak4mxib
2023-11-29T12:03:03,598 Created temporary directory: /tmp/pip-unpack-8tgsvj7p
2023-11-29T12:03:03,604 Building wheels for collected packages: kegg2bipartitegraph
2023-11-29T12:03:03,609   Created temporary directory: /tmp/pip-wheel-9h38743i
2023-11-29T12:03:03,610   Building wheel for kegg2bipartitegraph (setup.py): started
2023-11-29T12:03:03,611   Destination directory: /tmp/pip-wheel-9h38743i
2023-11-29T12:03:03,612   Running command python setup.py bdist_wheel
2023-11-29T12:03:04,083   No `name` configuration, performing automatic discovery
2023-11-29T12:03:04,669   running bdist_wheel
2023-11-29T12:03:04,769   running build
2023-11-29T12:03:04,770   running build_py
2023-11-29T12:03:04,798   creating build
2023-11-29T12:03:04,799   creating build/lib
2023-11-29T12:03:04,800   creating build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,801   copying kegg2bipartitegraph/eggnog.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,804   copying kegg2bipartitegraph/esmecata.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,807   copying kegg2bipartitegraph/utils.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,810   copying kegg2bipartitegraph/__main__.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,812   copying kegg2bipartitegraph/graph.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,814   copying kegg2bipartitegraph/kofamkoala.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,817   copying kegg2bipartitegraph/sbml.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,820   copying kegg2bipartitegraph/scope.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,822   copying kegg2bipartitegraph/mapping.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,825   copying kegg2bipartitegraph/reference.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,828   copying kegg2bipartitegraph/__init__.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,829   copying kegg2bipartitegraph/organism.py -> build/lib/kegg2bipartitegraph
2023-11-29T12:03:04,838   creating build/lib/kegg2bipartitegraph/data
2023-11-29T12:03:04,839   creating build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,840   copying kegg2bipartitegraph/data/kegg_model/kegg_compound_name.tsv -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,859   copying kegg2bipartitegraph/data/kegg_model/kegg_pathways.tsv -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,875   copying kegg2bipartitegraph/data/kegg_model/kegg_modules.tsv -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,879   copying kegg2bipartitegraph/data/kegg_model/kegg_removed_changed_reaction.tsv -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,883   copying kegg2bipartitegraph/data/kegg_model/kegg_mapping.tsv -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,891   copying kegg2bipartitegraph/data/kegg_model/kegg_metadata.json -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:04,893   copying kegg2bipartitegraph/data/kegg_model/kegg_model.sbml -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,098   copying kegg2bipartitegraph/data/kegg_model/kegg_model.graphml -> build/lib/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,162   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-11-29T12:03:05,163   !!

2023-11-29T12:03:05,164           ********************************************************************************
2023-11-29T12:03:05,165           Please avoid running ``setup.py`` directly.
2023-11-29T12:03:05,165           Instead, use pypa/build, pypa/installer or other
2023-11-29T12:03:05,166           standards-based tools.

2023-11-29T12:03:05,167           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-11-29T12:03:05,168           ********************************************************************************

2023-11-29T12:03:05,169   !!
2023-11-29T12:03:05,169     self.initialize_options()
2023-11-29T12:03:05,193   installing to build/bdist.linux-aarch64/wheel
2023-11-29T12:03:05,194   running install
2023-11-29T12:03:05,219   running install_lib
2023-11-29T12:03:05,245   creating build/bdist.linux-aarch64
2023-11-29T12:03:05,246   creating build/bdist.linux-aarch64/wheel
2023-11-29T12:03:05,248   creating build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,250   copying build/lib/kegg2bipartitegraph/eggnog.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,253   copying build/lib/kegg2bipartitegraph/esmecata.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,256   copying build/lib/kegg2bipartitegraph/utils.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,259   copying build/lib/kegg2bipartitegraph/__main__.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,262   copying build/lib/kegg2bipartitegraph/graph.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,265   copying build/lib/kegg2bipartitegraph/kofamkoala.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,268   creating build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data
2023-11-29T12:03:05,270   creating build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,271   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_compound_name.tsv -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,290   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_model.graphml -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,322   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_metadata.json -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,325   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_model.sbml -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,518   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_pathways.tsv -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,536   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_modules.tsv -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,540   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_removed_changed_reaction.tsv -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,544   copying build/lib/kegg2bipartitegraph/data/kegg_model/kegg_mapping.tsv -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph/data/kegg_model
2023-11-29T12:03:05,551   copying build/lib/kegg2bipartitegraph/sbml.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,553   copying build/lib/kegg2bipartitegraph/scope.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,555   copying build/lib/kegg2bipartitegraph/mapping.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,558   copying build/lib/kegg2bipartitegraph/reference.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,561   copying build/lib/kegg2bipartitegraph/__init__.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,563   copying build/lib/kegg2bipartitegraph/organism.py -> build/bdist.linux-aarch64/wheel/kegg2bipartitegraph
2023-11-29T12:03:05,565   running install_egg_info
2023-11-29T12:03:05,631   running egg_info
2023-11-29T12:03:05,658   writing kegg2bipartitegraph.egg-info/PKG-INFO
2023-11-29T12:03:05,662   writing dependency_links to kegg2bipartitegraph.egg-info/dependency_links.txt
2023-11-29T12:03:05,664   writing entry points to kegg2bipartitegraph.egg-info/entry_points.txt
2023-11-29T12:03:05,665   writing requirements to kegg2bipartitegraph.egg-info/requires.txt
2023-11-29T12:03:05,666   writing top-level names to kegg2bipartitegraph.egg-info/top_level.txt
2023-11-29T12:03:05,699   reading manifest file 'kegg2bipartitegraph.egg-info/SOURCES.txt'
2023-11-29T12:03:05,702   adding license file 'LICENSE'
2023-11-29T12:03:05,705   writing manifest file 'kegg2bipartitegraph.egg-info/SOURCES.txt'
2023-11-29T12:03:05,707   Copying kegg2bipartitegraph.egg-info to build/bdist.linux-aarch64/wheel/kegg2bipartitegraph-0.0.2-py3.11.egg-info
2023-11-29T12:03:05,720   running install_scripts
2023-11-29T12:03:05,739   creating build/bdist.linux-aarch64/wheel/kegg2bipartitegraph-0.0.2.dist-info/WHEEL
2023-11-29T12:03:05,741   creating '/tmp/pip-wheel-9h38743i/kegg2bipartitegraph-0.0.2-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
2023-11-29T12:03:05,744   adding 'kegg2bipartitegraph/__init__.py'
2023-11-29T12:03:05,746   adding 'kegg2bipartitegraph/__main__.py'
2023-11-29T12:03:05,748   adding 'kegg2bipartitegraph/eggnog.py'
2023-11-29T12:03:05,751   adding 'kegg2bipartitegraph/esmecata.py'
2023-11-29T12:03:05,753   adding 'kegg2bipartitegraph/graph.py'
2023-11-29T12:03:05,755   adding 'kegg2bipartitegraph/kofamkoala.py'
2023-11-29T12:03:05,756   adding 'kegg2bipartitegraph/mapping.py'
2023-11-29T12:03:05,759   adding 'kegg2bipartitegraph/organism.py'
2023-11-29T12:03:05,763   adding 'kegg2bipartitegraph/reference.py'
2023-11-29T12:03:05,765   adding 'kegg2bipartitegraph/sbml.py'
2023-11-29T12:03:05,767   adding 'kegg2bipartitegraph/scope.py'
2023-11-29T12:03:05,769   adding 'kegg2bipartitegraph/utils.py'
2023-11-29T12:03:05,914   adding 'kegg2bipartitegraph/data/kegg_model/kegg_compound_name.tsv'
2023-11-29T12:03:06,006   adding 'kegg2bipartitegraph/data/kegg_model/kegg_mapping.tsv'
2023-11-29T12:03:06,009   adding 'kegg2bipartitegraph/data/kegg_model/kegg_metadata.json'
2023-11-29T12:03:06,152   adding 'kegg2bipartitegraph/data/kegg_model/kegg_model.graphml'
2023-11-29T12:03:06,690   adding 'kegg2bipartitegraph/data/kegg_model/kegg_model.sbml'
2023-11-29T12:03:06,791   adding 'kegg2bipartitegraph/data/kegg_model/kegg_modules.tsv'
2023-11-29T12:03:06,972   adding 'kegg2bipartitegraph/data/kegg_model/kegg_pathways.tsv'
2023-11-29T12:03:06,986   adding 'kegg2bipartitegraph/data/kegg_model/kegg_removed_changed_reaction.tsv'
2023-11-29T12:03:06,993   adding 'kegg2bipartitegraph-0.0.2.dist-info/LICENSE'
2023-11-29T12:03:06,995   adding 'kegg2bipartitegraph-0.0.2.dist-info/METADATA'
2023-11-29T12:03:06,996   adding 'kegg2bipartitegraph-0.0.2.dist-info/WHEEL'
2023-11-29T12:03:06,997   adding 'kegg2bipartitegraph-0.0.2.dist-info/entry_points.txt'
2023-11-29T12:03:06,998   adding 'kegg2bipartitegraph-0.0.2.dist-info/top_level.txt'
2023-11-29T12:03:06,999   adding 'kegg2bipartitegraph-0.0.2.dist-info/RECORD'
2023-11-29T12:03:07,034   removing build/bdist.linux-aarch64/wheel
2023-11-29T12:03:07,160   Building wheel for kegg2bipartitegraph (setup.py): finished with status 'done'
2023-11-29T12:03:07,179   Created wheel for kegg2bipartitegraph: filename=kegg2bipartitegraph-0.0.2-py3-none-any.whl size=1858129 sha256=9a12e9eab7a2d386b314d2bc529d3d55293242a70d14e3e1f36fb703d1bb247a
2023-11-29T12:03:07,180   Stored in directory: /tmp/pip-ephem-wheel-cache-hyjtyngy/wheels/32/e7/a5/209e0d3d3f13af84b9a370c7adcfff16d78172aa6af207dac3
2023-11-29T12:03:07,194 Successfully built kegg2bipartitegraph
2023-11-29T12:03:07,257 Removed build tracker: '/tmp/pip-build-tracker-h1xhrtty'