2023-11-29T19:41:50,860 Created temporary directory: /tmp/pip-build-tracker-h9f_98f6 2023-11-29T19:41:50,861 Initialized build tracking at /tmp/pip-build-tracker-h9f_98f6 2023-11-29T19:41:50,862 Created build tracker: /tmp/pip-build-tracker-h9f_98f6 2023-11-29T19:41:50,863 Entered build tracker: /tmp/pip-build-tracker-h9f_98f6 2023-11-29T19:41:50,863 Created temporary directory: /tmp/pip-wheel-x23mrmfm 2023-11-29T19:41:50,867 Created temporary directory: /tmp/pip-ephem-wheel-cache-5ocg_mpw 2023-11-29T19:41:50,892 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-29T19:41:50,896 2 location(s) to search for versions of galaxy-app: 2023-11-29T19:41:50,896 * https://pypi.org/simple/galaxy-app/ 2023-11-29T19:41:50,896 * https://www.piwheels.org/simple/galaxy-app/ 2023-11-29T19:41:50,897 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2023-11-29T19:41:50,897 Getting page https://pypi.org/simple/galaxy-app/ 2023-11-29T19:41:50,899 Found index url https://pypi.org/simple/ 2023-11-29T19:41:51,118 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2023-11-29T19:41:51,124 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2023-11-29T19:41:51,125 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-11-29T19:41:51,126 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2023-11-29T19:41:51,126 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-11-29T19:41:51,127 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2023-11-29T19:41:51,128 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-11-29T19:41:51,129 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2023-11-29T19:41:51,129 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2023-11-29T19:41:51,131 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2023-11-29T19:41:51,131 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,132 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2023-11-29T19:41:51,133 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,134 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2023-11-29T19:41:51,135 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,136 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2023-11-29T19:41:51,137 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,138 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2023-11-29T19:41:51,138 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,139 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2023-11-29T19:41:51,140 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,141 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2023-11-29T19:41:51,142 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,143 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2023-11-29T19:41:51,144 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,145 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2023-11-29T19:41:51,145 Getting page https://www.piwheels.org/simple/galaxy-app/ 2023-11-29T19:41:51,147 Found index url https://www.piwheels.org/simple/ 2023-11-29T19:41:51,296 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2023-11-29T19:41:51,300 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,300 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,301 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,302 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,303 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,303 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,304 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2023-11-29T19:41:51,304 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2023-11-29T19:41:51,305 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2023-11-29T19:41:51,306 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2023-11-29T19:41:51,306 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2023-11-29T19:41:51,329 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2023-11-29T19:41:51,350 Collecting galaxy-app==23.1.2 2023-11-29T19:41:51,353 Created temporary directory: /tmp/pip-unpack-n81i7pn9 2023-11-29T19:41:51,574 Downloading galaxy-app-23.1.2.tar.gz (1.1 MB) 2023-11-29T19:41:53,097 Added galaxy-app==23.1.2 from https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-h9f_98f6' 2023-11-29T19:41:53,101 Created temporary directory: /tmp/pip-build-env-ne7tuv0_ 2023-11-29T19:41:53,106 Installing build dependencies: started 2023-11-29T19:41:53,108 Running command pip subprocess to install build dependencies 2023-11-29T19:41:54,329 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-29T19:41:54,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-29T19:41:56,317 Collecting setuptools 2023-11-29T19:41:56,334 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB) 2023-11-29T19:41:58,966 Installing collected packages: setuptools 2023-11-29T19:42:01,407 Successfully installed setuptools-69.0.2 2023-11-29T19:42:02,017 Installing build dependencies: finished with status 'done' 2023-11-29T19:42:02,020 Getting requirements to build wheel: started 2023-11-29T19:42:02,022 Running command Getting requirements to build wheel 2023-11-29T19:42:02,734 running egg_info 2023-11-29T19:42:02,738 writing galaxy_app.egg-info/PKG-INFO 2023-11-29T19:42:02,745 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2023-11-29T19:42:02,747 writing entry points to galaxy_app.egg-info/entry_points.txt 2023-11-29T19:42:02,750 writing requirements to galaxy_app.egg-info/requires.txt 2023-11-29T19:42:02,752 writing top-level names to galaxy_app.egg-info/top_level.txt 2023-11-29T19:42:02,837 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:02,896 reading manifest template 'MANIFEST.in' 2023-11-29T19:42:03,480 adding license file 'LICENSE' 2023-11-29T19:42:03,507 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:03,588 Getting requirements to build wheel: finished with status 'done' 2023-11-29T19:42:03,596 Installing backend dependencies: started 2023-11-29T19:42:03,598 Running command pip subprocess to install backend dependencies 2023-11-29T19:42:04,811 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2023-11-29T19:42:05,366 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-29T19:42:05,857 Collecting wheel 2023-11-29T19:42:05,873 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2023-11-29T19:42:08,172 Installing collected packages: wheel 2023-11-29T19:42:08,420 Creating /tmp/pip-build-env-ne7tuv0_/normal/local/bin 2023-11-29T19:42:08,422 changing mode of /tmp/pip-build-env-ne7tuv0_/normal/local/bin/wheel to 755 2023-11-29T19:42:08,436 Successfully installed wheel-0.42.0 2023-11-29T19:42:09,010 Installing backend dependencies: finished with status 'done' 2023-11-29T19:42:09,012 Created temporary directory: /tmp/pip-modern-metadata-kjjmf_ta 2023-11-29T19:42:09,015 Preparing metadata (pyproject.toml): started 2023-11-29T19:42:09,016 Running command Preparing metadata (pyproject.toml) 2023-11-29T19:42:09,623 running dist_info 2023-11-29T19:42:09,645 creating /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info 2023-11-29T19:42:09,649 writing /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/PKG-INFO 2023-11-29T19:42:09,654 writing dependency_links to /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/dependency_links.txt 2023-11-29T19:42:09,656 writing entry points to /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/entry_points.txt 2023-11-29T19:42:09,659 writing requirements to /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/requires.txt 2023-11-29T19:42:09,660 writing top-level names to /tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/top_level.txt 2023-11-29T19:42:09,661 writing manifest file '/tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:09,763 reading manifest file '/tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:09,765 reading manifest template 'MANIFEST.in' 2023-11-29T19:42:10,324 adding license file 'LICENSE' 2023-11-29T19:42:10,343 writing manifest file '/tmp/pip-modern-metadata-kjjmf_ta/galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:10,345 creating '/tmp/pip-modern-metadata-kjjmf_ta/galaxy_app-23.1.2.dist-info' 2023-11-29T19:42:10,554 Preparing metadata (pyproject.toml): finished with status 'done' 2023-11-29T19:42:10,561 Source in /tmp/pip-wheel-x23mrmfm/galaxy-app_321da2d238a24de2bc7b78814353912c has version 23.1.2, which satisfies requirement galaxy-app==23.1.2 from https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz 2023-11-29T19:42:10,563 Removed galaxy-app==23.1.2 from https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-h9f_98f6' 2023-11-29T19:42:10,571 Created temporary directory: /tmp/pip-unpack-idlpjww1 2023-11-29T19:42:10,572 Created temporary directory: /tmp/pip-unpack-6h2xw49m 2023-11-29T19:42:10,620 Building wheels for collected packages: galaxy-app 2023-11-29T19:42:10,625 Created temporary directory: /tmp/pip-wheel-jd4jgdba 2023-11-29T19:42:10,626 Destination directory: /tmp/pip-wheel-jd4jgdba 2023-11-29T19:42:10,628 Building wheel for galaxy-app (pyproject.toml): started 2023-11-29T19:42:10,630 Running command Building wheel for galaxy-app (pyproject.toml) 2023-11-29T19:42:11,242 running bdist_wheel 2023-11-29T19:42:11,288 running build 2023-11-29T19:42:11,289 running build_py 2023-11-29T19:42:11,296 creating build 2023-11-29T19:42:11,297 creating build/lib 2023-11-29T19:42:11,298 creating build/lib/galaxy_ext 2023-11-29T19:42:11,299 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2023-11-29T19:42:11,302 creating build/lib/galaxy 2023-11-29T19:42:11,303 copying galaxy/di.py -> build/lib/galaxy 2023-11-29T19:42:11,305 copying galaxy/queue_worker.py -> build/lib/galaxy 2023-11-29T19:42:11,308 copying galaxy/main_config.py -> build/lib/galaxy 2023-11-29T19:42:11,310 copying galaxy/__init__.py -> build/lib/galaxy 2023-11-29T19:42:11,312 copying galaxy/queues.py -> build/lib/galaxy 2023-11-29T19:42:11,314 copying galaxy/main.py -> build/lib/galaxy 2023-11-29T19:42:11,317 copying galaxy/app.py -> build/lib/galaxy 2023-11-29T19:42:11,320 copying galaxy/structured_app.py -> build/lib/galaxy 2023-11-29T19:42:11,322 copying galaxy/config_watchers.py -> build/lib/galaxy 2023-11-29T19:42:11,325 creating build/lib/tool_shed_client 2023-11-29T19:42:11,326 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2023-11-29T19:42:11,328 creating build/lib/galaxy_ext/metadata 2023-11-29T19:42:11,329 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2023-11-29T19:42:11,331 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2023-11-29T19:42:11,334 creating build/lib/galaxy_ext/container_monitor 2023-11-29T19:42:11,334 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2023-11-29T19:42:11,336 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2023-11-29T19:42:11,339 creating build/lib/galaxy_ext/expressions 2023-11-29T19:42:11,340 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2023-11-29T19:42:11,342 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2023-11-29T19:42:11,344 creating build/lib/galaxy/workflow 2023-11-29T19:42:11,345 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,348 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,349 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,352 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,356 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,359 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,362 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,365 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,367 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2023-11-29T19:42:11,371 creating build/lib/galaxy/dependencies 2023-11-29T19:42:11,372 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2023-11-29T19:42:11,376 creating build/lib/galaxy/forms 2023-11-29T19:42:11,378 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2023-11-29T19:42:11,380 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2023-11-29T19:42:11,383 creating build/lib/galaxy/authnz 2023-11-29T19:42:11,385 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2023-11-29T19:42:11,387 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2023-11-29T19:42:11,390 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2023-11-29T19:42:11,393 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2023-11-29T19:42:11,396 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2023-11-29T19:42:11,399 creating build/lib/galaxy/app_unittest_utils 2023-11-29T19:42:11,401 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2023-11-29T19:42:11,404 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2023-11-29T19:42:11,406 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2023-11-29T19:42:11,409 creating build/lib/galaxy/celery 2023-11-29T19:42:11,410 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2023-11-29T19:42:11,413 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2023-11-29T19:42:11,416 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2023-11-29T19:42:11,419 creating build/lib/galaxy/visualization 2023-11-29T19:42:11,420 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2023-11-29T19:42:11,422 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2023-11-29T19:42:11,427 creating build/lib/galaxy/jobs 2023-11-29T19:42:11,428 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,431 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,434 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,436 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,441 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,444 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,446 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,449 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2023-11-29T19:42:11,455 creating build/lib/galaxy/actions 2023-11-29T19:42:11,456 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2023-11-29T19:42:11,458 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2023-11-29T19:42:11,462 creating build/lib/galaxy/managers 2023-11-29T19:42:11,463 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,466 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,468 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,470 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,473 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,476 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,478 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,480 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,482 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,484 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,486 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,489 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,491 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,495 copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,497 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,499 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,502 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,504 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,506 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,509 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,511 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,514 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,516 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,519 copying galaxy/managers/cloud.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,522 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,524 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,526 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,528 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,530 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,532 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,534 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,537 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,538 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,541 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,543 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,546 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,548 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,550 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,552 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,554 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,556 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,559 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,562 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,564 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,566 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,569 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,571 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,573 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,577 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,578 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,582 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,585 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,587 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,590 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,594 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2023-11-29T19:42:11,598 creating build/lib/galaxy/work 2023-11-29T19:42:11,599 copying galaxy/work/context.py -> build/lib/galaxy/work 2023-11-29T19:42:11,602 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2023-11-29T19:42:11,605 creating build/lib/galaxy/webhooks 2023-11-29T19:42:11,606 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2023-11-29T19:42:11,609 creating build/lib/galaxy/tool_shed 2023-11-29T19:42:11,611 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2023-11-29T19:42:11,613 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2023-11-29T19:42:11,615 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2023-11-29T19:42:11,618 creating build/lib/galaxy/tools 2023-11-29T19:42:11,619 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,622 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,625 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,627 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,630 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,632 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,634 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,637 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,642 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,643 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,645 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,648 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,650 copying galaxy/tools/test.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,653 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2023-11-29T19:42:11,655 creating build/lib/galaxy/workflow/refactor 2023-11-29T19:42:11,656 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2023-11-29T19:42:11,659 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2023-11-29T19:42:11,660 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2023-11-29T19:42:11,663 creating build/lib/galaxy/workflow/reports 2023-11-29T19:42:11,664 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2023-11-29T19:42:11,666 creating build/lib/galaxy/workflow/schedulers 2023-11-29T19:42:11,667 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2023-11-29T19:42:11,669 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2023-11-29T19:42:11,671 creating build/lib/galaxy/workflow/resources 2023-11-29T19:42:11,672 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2023-11-29T19:42:11,675 creating build/lib/galaxy/workflow/reports/generators 2023-11-29T19:42:11,676 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2023-11-29T19:42:11,678 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2023-11-29T19:42:11,680 creating build/lib/galaxy/visualization/genome 2023-11-29T19:42:11,681 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2023-11-29T19:42:11,684 creating build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,685 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,687 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,689 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,691 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,693 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,695 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2023-11-29T19:42:11,698 creating build/lib/galaxy/visualization/tracks 2023-11-29T19:42:11,699 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2023-11-29T19:42:11,702 creating build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,703 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,705 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,706 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,710 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,712 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2023-11-29T19:42:11,715 creating build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,716 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,718 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,720 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,722 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,725 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:11,727 creating build/lib/galaxy/jobs/splitters 2023-11-29T19:42:11,728 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2023-11-29T19:42:11,731 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2023-11-29T19:42:11,732 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2023-11-29T19:42:11,735 creating build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,736 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,739 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,741 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,744 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,747 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,748 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,751 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,754 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,757 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,760 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,762 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,764 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,768 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,771 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,774 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2023-11-29T19:42:11,778 creating build/lib/galaxy/jobs/rules 2023-11-29T19:42:11,779 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2023-11-29T19:42:11,782 creating build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,783 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,785 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,787 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,789 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,790 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,793 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,795 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,797 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2023-11-29T19:42:11,799 creating build/lib/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:11,800 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:11,803 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:11,804 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:11,807 creating build/lib/galaxy/jobs/runners/util/cli 2023-11-29T19:42:11,808 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2023-11-29T19:42:11,810 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2023-11-29T19:42:11,813 creating build/lib/galaxy/jobs/runners/util/condor 2023-11-29T19:42:11,813 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2023-11-29T19:42:11,816 creating build/lib/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:11,817 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:11,820 creating build/lib/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:11,821 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:11,823 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:11,824 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:11,827 creating build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,828 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,830 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,832 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,834 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,836 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,838 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:11,841 creating build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,841 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,844 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,847 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,849 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,851 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,853 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,856 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,859 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,861 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,864 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,865 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2023-11-29T19:42:11,868 creating build/lib/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:11,869 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:11,871 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:11,874 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:11,877 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:11,880 creating build/lib/galaxy/tool_shed/metadata 2023-11-29T19:42:11,881 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2023-11-29T19:42:11,884 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2023-11-29T19:42:11,886 creating build/lib/galaxy/tool_shed/tools 2023-11-29T19:42:11,887 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2023-11-29T19:42:11,889 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2023-11-29T19:42:11,891 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2023-11-29T19:42:11,894 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:11,894 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:11,896 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:11,899 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:11,900 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:11,902 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:11,905 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:11,906 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:11,909 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:11,911 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:11,913 creating build/lib/galaxy/tools/util 2023-11-29T19:42:11,914 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2023-11-29T19:42:11,917 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2023-11-29T19:42:11,919 creating build/lib/galaxy/tools/filters 2023-11-29T19:42:11,920 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2023-11-29T19:42:11,923 creating build/lib/galaxy/tools/search 2023-11-29T19:42:11,924 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2023-11-29T19:42:11,927 creating build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,928 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,931 copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,932 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,935 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,938 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,941 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,943 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,946 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,948 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,953 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,955 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,958 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2023-11-29T19:42:11,961 creating build/lib/galaxy/tools/data 2023-11-29T19:42:11,962 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2023-11-29T19:42:11,965 creating build/lib/galaxy/tools/actions 2023-11-29T19:42:11,966 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,968 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,970 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,972 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,976 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,977 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,980 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,983 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2023-11-29T19:42:11,985 creating build/lib/galaxy/tools/data_manager 2023-11-29T19:42:11,986 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2023-11-29T19:42:11,988 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2023-11-29T19:42:11,991 creating build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:11,992 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:11,994 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:11,996 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:11,998 creating build/lib/galaxy/tools/expressions 2023-11-29T19:42:11,999 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2023-11-29T19:42:12,001 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2023-11-29T19:42:12,003 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2023-11-29T19:42:12,005 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2023-11-29T19:42:12,007 creating build/lib/galaxy/tools/error_reports 2023-11-29T19:42:12,008 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2023-11-29T19:42:12,010 creating build/lib/galaxy/tools/util/galaxyops 2023-11-29T19:42:12,012 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2023-11-29T19:42:12,014 creating build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,015 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,018 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,020 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,022 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,024 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,026 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,028 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,030 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,033 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2023-11-29T19:42:12,035 creating build/lib/tool_shed_client/schema 2023-11-29T19:42:12,036 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2023-11-29T19:42:12,039 running egg_info 2023-11-29T19:42:12,043 writing galaxy_app.egg-info/PKG-INFO 2023-11-29T19:42:12,047 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2023-11-29T19:42:12,049 writing entry points to galaxy_app.egg-info/entry_points.txt 2023-11-29T19:42:12,051 writing requirements to galaxy_app.egg-info/requires.txt 2023-11-29T19:42:12,052 writing top-level names to galaxy_app.egg-info/top_level.txt 2023-11-29T19:42:12,112 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:12,127 reading manifest template 'MANIFEST.in' 2023-11-29T19:42:12,732 adding license file 'LICENSE' 2023-11-29T19:42:12,758 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2023-11-29T19:42:12,763 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2023-11-29T19:42:12,764 !! 2023-11-29T19:42:12,765 ******************************************************************************** 2023-11-29T19:42:12,765 ############################ 2023-11-29T19:42:12,766 # Package would be ignored # 2023-11-29T19:42:12,766 ############################ 2023-11-29T19:42:12,767 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2023-11-29T19:42:12,767 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,768 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,769 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2023-11-29T19:42:12,769 to the `packages` configuration field. 2023-11-29T19:42:12,770 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,772 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,773 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,774 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,775 If you don't want 'galaxy.tools.bundled' to be distributed and are 2023-11-29T19:42:12,776 already explicitly excluding 'galaxy.tools.bundled' via 2023-11-29T19:42:12,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,777 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,778 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,779 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,781 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,782 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,783 even if it does not contain any `.py` files. 2023-11-29T19:42:12,784 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,784 directory, all directories are treated like packages. 2023-11-29T19:42:12,785 ******************************************************************************** 2023-11-29T19:42:12,786 !! 2023-11-29T19:42:12,787 check.warn(importable) 2023-11-29T19:42:12,787 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2023-11-29T19:42:12,788 !! 2023-11-29T19:42:12,789 ******************************************************************************** 2023-11-29T19:42:12,790 ############################ 2023-11-29T19:42:12,791 # Package would be ignored # 2023-11-29T19:42:12,791 ############################ 2023-11-29T19:42:12,792 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2023-11-29T19:42:12,792 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,793 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,794 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2023-11-29T19:42:12,794 to the `packages` configuration field. 2023-11-29T19:42:12,795 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,796 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,796 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,797 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,799 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2023-11-29T19:42:12,800 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2023-11-29T19:42:12,800 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,801 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,802 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,805 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,806 even if it does not contain any `.py` files. 2023-11-29T19:42:12,806 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,806 directory, all directories are treated like packages. 2023-11-29T19:42:12,807 ******************************************************************************** 2023-11-29T19:42:12,808 !! 2023-11-29T19:42:12,809 check.warn(importable) 2023-11-29T19:42:12,810 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2023-11-29T19:42:12,810 !! 2023-11-29T19:42:12,811 ******************************************************************************** 2023-11-29T19:42:12,812 ############################ 2023-11-29T19:42:12,813 # Package would be ignored # 2023-11-29T19:42:12,813 ############################ 2023-11-29T19:42:12,814 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2023-11-29T19:42:12,814 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,815 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,816 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2023-11-29T19:42:12,816 to the `packages` configuration field. 2023-11-29T19:42:12,818 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,819 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,820 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,823 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2023-11-29T19:42:12,823 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2023-11-29T19:42:12,824 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,825 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,826 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,827 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,828 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,829 even if it does not contain any `.py` files. 2023-11-29T19:42:12,829 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,830 directory, all directories are treated like packages. 2023-11-29T19:42:12,830 ******************************************************************************** 2023-11-29T19:42:12,831 !! 2023-11-29T19:42:12,832 check.warn(importable) 2023-11-29T19:42:12,832 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2023-11-29T19:42:12,833 !! 2023-11-29T19:42:12,834 ******************************************************************************** 2023-11-29T19:42:12,834 ############################ 2023-11-29T19:42:12,835 # Package would be ignored # 2023-11-29T19:42:12,835 ############################ 2023-11-29T19:42:12,836 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2023-11-29T19:42:12,836 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,837 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,838 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2023-11-29T19:42:12,838 to the `packages` configuration field. 2023-11-29T19:42:12,839 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,840 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,841 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,842 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,843 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,844 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2023-11-29T19:42:12,844 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2023-11-29T19:42:12,845 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,846 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,847 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,851 even if it does not contain any `.py` files. 2023-11-29T19:42:12,851 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,852 directory, all directories are treated like packages. 2023-11-29T19:42:12,852 ******************************************************************************** 2023-11-29T19:42:12,854 !! 2023-11-29T19:42:12,854 check.warn(importable) 2023-11-29T19:42:12,854 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2023-11-29T19:42:12,855 !! 2023-11-29T19:42:12,856 ******************************************************************************** 2023-11-29T19:42:12,857 ############################ 2023-11-29T19:42:12,857 # Package would be ignored # 2023-11-29T19:42:12,857 ############################ 2023-11-29T19:42:12,858 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2023-11-29T19:42:12,858 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,859 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,860 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2023-11-29T19:42:12,860 to the `packages` configuration field. 2023-11-29T19:42:12,861 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,862 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,863 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,864 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,865 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2023-11-29T19:42:12,865 already explicitly excluding 'galaxy.tools.bundled.extract' via 2023-11-29T19:42:12,866 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,866 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,867 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,868 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,869 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,872 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,872 even if it does not contain any `.py` files. 2023-11-29T19:42:12,873 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,874 directory, all directories are treated like packages. 2023-11-29T19:42:12,875 ******************************************************************************** 2023-11-29T19:42:12,876 !! 2023-11-29T19:42:12,876 check.warn(importable) 2023-11-29T19:42:12,877 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2023-11-29T19:42:12,877 !! 2023-11-29T19:42:12,878 ******************************************************************************** 2023-11-29T19:42:12,879 ############################ 2023-11-29T19:42:12,880 # Package would be ignored # 2023-11-29T19:42:12,880 ############################ 2023-11-29T19:42:12,881 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2023-11-29T19:42:12,881 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,882 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,883 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2023-11-29T19:42:12,883 to the `packages` configuration field. 2023-11-29T19:42:12,885 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,885 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,886 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,887 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,888 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,888 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2023-11-29T19:42:12,889 already explicitly excluding 'galaxy.tools.bundled.filters' via 2023-11-29T19:42:12,889 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,890 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,890 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,891 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,892 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,893 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,894 even if it does not contain any `.py` files. 2023-11-29T19:42:12,895 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,895 directory, all directories are treated like packages. 2023-11-29T19:42:12,896 ******************************************************************************** 2023-11-29T19:42:12,897 !! 2023-11-29T19:42:12,897 check.warn(importable) 2023-11-29T19:42:12,898 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2023-11-29T19:42:12,898 !! 2023-11-29T19:42:12,899 ******************************************************************************** 2023-11-29T19:42:12,900 ############################ 2023-11-29T19:42:12,901 # Package would be ignored # 2023-11-29T19:42:12,901 ############################ 2023-11-29T19:42:12,902 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2023-11-29T19:42:12,902 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,903 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,904 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2023-11-29T19:42:12,904 to the `packages` configuration field. 2023-11-29T19:42:12,906 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,906 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,907 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,908 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,909 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,910 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2023-11-29T19:42:12,911 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2023-11-29T19:42:12,911 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,912 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,914 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,917 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,917 even if it does not contain any `.py` files. 2023-11-29T19:42:12,918 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,918 directory, all directories are treated like packages. 2023-11-29T19:42:12,918 ******************************************************************************** 2023-11-29T19:42:12,919 !! 2023-11-29T19:42:12,920 check.warn(importable) 2023-11-29T19:42:12,920 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2023-11-29T19:42:12,921 !! 2023-11-29T19:42:12,922 ******************************************************************************** 2023-11-29T19:42:12,922 ############################ 2023-11-29T19:42:12,923 # Package would be ignored # 2023-11-29T19:42:12,923 ############################ 2023-11-29T19:42:12,924 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2023-11-29T19:42:12,924 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,925 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,926 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2023-11-29T19:42:12,926 to the `packages` configuration field. 2023-11-29T19:42:12,927 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,928 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,929 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,931 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2023-11-29T19:42:12,932 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2023-11-29T19:42:12,933 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,933 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,934 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,935 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,938 even if it does not contain any `.py` files. 2023-11-29T19:42:12,939 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,939 directory, all directories are treated like packages. 2023-11-29T19:42:12,940 ******************************************************************************** 2023-11-29T19:42:12,941 !! 2023-11-29T19:42:12,942 check.warn(importable) 2023-11-29T19:42:12,942 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2023-11-29T19:42:12,943 !! 2023-11-29T19:42:12,944 ******************************************************************************** 2023-11-29T19:42:12,945 ############################ 2023-11-29T19:42:12,945 # Package would be ignored # 2023-11-29T19:42:12,946 ############################ 2023-11-29T19:42:12,947 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2023-11-29T19:42:12,947 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,948 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,948 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2023-11-29T19:42:12,949 to the `packages` configuration field. 2023-11-29T19:42:12,950 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,950 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,951 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,952 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,952 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,953 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2023-11-29T19:42:12,954 already explicitly excluding 'galaxy.tools.bundled.maf' via 2023-11-29T19:42:12,954 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,955 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,955 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,956 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,957 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,959 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,959 even if it does not contain any `.py` files. 2023-11-29T19:42:12,960 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,960 directory, all directories are treated like packages. 2023-11-29T19:42:12,961 ******************************************************************************** 2023-11-29T19:42:12,962 !! 2023-11-29T19:42:12,963 check.warn(importable) 2023-11-29T19:42:12,963 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2023-11-29T19:42:12,964 !! 2023-11-29T19:42:12,965 ******************************************************************************** 2023-11-29T19:42:12,966 ############################ 2023-11-29T19:42:12,966 # Package would be ignored # 2023-11-29T19:42:12,967 ############################ 2023-11-29T19:42:12,967 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2023-11-29T19:42:12,968 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,969 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,970 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2023-11-29T19:42:12,970 to the `packages` configuration field. 2023-11-29T19:42:12,971 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,972 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,973 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,974 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,976 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2023-11-29T19:42:12,977 already explicitly excluding 'galaxy.tools.bundled.meme' via 2023-11-29T19:42:12,977 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:12,978 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:12,978 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:12,979 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:12,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:12,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:12,982 even if it does not contain any `.py` files. 2023-11-29T19:42:12,983 On the other hand, currently there is no concept of package data 2023-11-29T19:42:12,983 directory, all directories are treated like packages. 2023-11-29T19:42:12,984 ******************************************************************************** 2023-11-29T19:42:12,985 !! 2023-11-29T19:42:12,985 check.warn(importable) 2023-11-29T19:42:12,986 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2023-11-29T19:42:12,986 !! 2023-11-29T19:42:12,988 ******************************************************************************** 2023-11-29T19:42:12,988 ############################ 2023-11-29T19:42:12,988 # Package would be ignored # 2023-11-29T19:42:12,989 ############################ 2023-11-29T19:42:12,990 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2023-11-29T19:42:12,990 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:12,992 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:12,992 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2023-11-29T19:42:12,993 to the `packages` configuration field. 2023-11-29T19:42:12,994 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:12,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:12,995 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:12,996 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:12,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:12,998 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2023-11-29T19:42:12,999 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2023-11-29T19:42:12,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,000 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,001 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,002 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,003 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,005 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,005 even if it does not contain any `.py` files. 2023-11-29T19:42:13,006 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,006 directory, all directories are treated like packages. 2023-11-29T19:42:13,007 ******************************************************************************** 2023-11-29T19:42:13,008 !! 2023-11-29T19:42:13,009 check.warn(importable) 2023-11-29T19:42:13,009 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2023-11-29T19:42:13,010 !! 2023-11-29T19:42:13,011 ******************************************************************************** 2023-11-29T19:42:13,012 ############################ 2023-11-29T19:42:13,012 # Package would be ignored # 2023-11-29T19:42:13,013 ############################ 2023-11-29T19:42:13,013 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2023-11-29T19:42:13,014 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,015 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,015 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2023-11-29T19:42:13,016 to the `packages` configuration field. 2023-11-29T19:42:13,017 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,018 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,018 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,020 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2023-11-29T19:42:13,021 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2023-11-29T19:42:13,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,023 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,024 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,027 even if it does not contain any `.py` files. 2023-11-29T19:42:13,028 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,028 directory, all directories are treated like packages. 2023-11-29T19:42:13,029 ******************************************************************************** 2023-11-29T19:42:13,030 !! 2023-11-29T19:42:13,030 check.warn(importable) 2023-11-29T19:42:13,031 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2023-11-29T19:42:13,031 !! 2023-11-29T19:42:13,033 ******************************************************************************** 2023-11-29T19:42:13,033 ############################ 2023-11-29T19:42:13,034 # Package would be ignored # 2023-11-29T19:42:13,034 ############################ 2023-11-29T19:42:13,035 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2023-11-29T19:42:13,035 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,037 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,037 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2023-11-29T19:42:13,038 to the `packages` configuration field. 2023-11-29T19:42:13,039 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,040 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,040 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,041 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,042 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,043 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2023-11-29T19:42:13,044 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2023-11-29T19:42:13,044 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,045 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,045 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,046 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,047 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,048 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,049 even if it does not contain any `.py` files. 2023-11-29T19:42:13,049 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,050 directory, all directories are treated like packages. 2023-11-29T19:42:13,050 ******************************************************************************** 2023-11-29T19:42:13,051 !! 2023-11-29T19:42:13,052 check.warn(importable) 2023-11-29T19:42:13,052 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2023-11-29T19:42:13,053 !! 2023-11-29T19:42:13,054 ******************************************************************************** 2023-11-29T19:42:13,054 ############################ 2023-11-29T19:42:13,055 # Package would be ignored # 2023-11-29T19:42:13,055 ############################ 2023-11-29T19:42:13,056 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2023-11-29T19:42:13,056 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,058 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,058 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2023-11-29T19:42:13,059 to the `packages` configuration field. 2023-11-29T19:42:13,060 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,060 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,061 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,062 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,063 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,064 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2023-11-29T19:42:13,065 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2023-11-29T19:42:13,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,066 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,067 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,068 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,069 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,071 even if it does not contain any `.py` files. 2023-11-29T19:42:13,071 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,072 directory, all directories are treated like packages. 2023-11-29T19:42:13,072 ******************************************************************************** 2023-11-29T19:42:13,073 !! 2023-11-29T19:42:13,074 check.warn(importable) 2023-11-29T19:42:13,074 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2023-11-29T19:42:13,075 !! 2023-11-29T19:42:13,076 ******************************************************************************** 2023-11-29T19:42:13,077 ############################ 2023-11-29T19:42:13,077 # Package would be ignored # 2023-11-29T19:42:13,078 ############################ 2023-11-29T19:42:13,078 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2023-11-29T19:42:13,079 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,080 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,080 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2023-11-29T19:42:13,081 to the `packages` configuration field. 2023-11-29T19:42:13,082 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,083 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,084 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,085 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,086 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2023-11-29T19:42:13,086 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2023-11-29T19:42:13,087 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,088 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,089 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,092 even if it does not contain any `.py` files. 2023-11-29T19:42:13,093 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,093 directory, all directories are treated like packages. 2023-11-29T19:42:13,094 ******************************************************************************** 2023-11-29T19:42:13,095 !! 2023-11-29T19:42:13,096 check.warn(importable) 2023-11-29T19:42:13,096 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2023-11-29T19:42:13,097 !! 2023-11-29T19:42:13,098 ******************************************************************************** 2023-11-29T19:42:13,098 ############################ 2023-11-29T19:42:13,099 # Package would be ignored # 2023-11-29T19:42:13,100 ############################ 2023-11-29T19:42:13,100 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2023-11-29T19:42:13,101 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,102 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,102 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2023-11-29T19:42:13,103 to the `packages` configuration field. 2023-11-29T19:42:13,104 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,104 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,105 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,105 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,106 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,107 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2023-11-29T19:42:13,108 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2023-11-29T19:42:13,108 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,109 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,109 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,110 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,111 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,113 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,114 even if it does not contain any `.py` files. 2023-11-29T19:42:13,114 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,115 directory, all directories are treated like packages. 2023-11-29T19:42:13,115 ******************************************************************************** 2023-11-29T19:42:13,117 !! 2023-11-29T19:42:13,117 check.warn(importable) 2023-11-29T19:42:13,118 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2023-11-29T19:42:13,118 !! 2023-11-29T19:42:13,120 ******************************************************************************** 2023-11-29T19:42:13,120 ############################ 2023-11-29T19:42:13,121 # Package would be ignored # 2023-11-29T19:42:13,121 ############################ 2023-11-29T19:42:13,122 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2023-11-29T19:42:13,123 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,124 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,125 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2023-11-29T19:42:13,126 to the `packages` configuration field. 2023-11-29T19:42:13,127 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,127 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,128 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,129 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,132 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2023-11-29T19:42:13,132 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2023-11-29T19:42:13,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,134 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,135 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,139 even if it does not contain any `.py` files. 2023-11-29T19:42:13,140 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,140 directory, all directories are treated like packages. 2023-11-29T19:42:13,141 ******************************************************************************** 2023-11-29T19:42:13,142 !! 2023-11-29T19:42:13,142 check.warn(importable) 2023-11-29T19:42:13,143 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2023-11-29T19:42:13,143 !! 2023-11-29T19:42:13,144 ******************************************************************************** 2023-11-29T19:42:13,145 ############################ 2023-11-29T19:42:13,145 # Package would be ignored # 2023-11-29T19:42:13,146 ############################ 2023-11-29T19:42:13,146 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2023-11-29T19:42:13,147 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,148 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,148 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2023-11-29T19:42:13,149 to the `packages` configuration field. 2023-11-29T19:42:13,150 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,151 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,151 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,152 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,153 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,154 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2023-11-29T19:42:13,155 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2023-11-29T19:42:13,155 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,156 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,156 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,158 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,161 even if it does not contain any `.py` files. 2023-11-29T19:42:13,162 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,162 directory, all directories are treated like packages. 2023-11-29T19:42:13,163 ******************************************************************************** 2023-11-29T19:42:13,164 !! 2023-11-29T19:42:13,164 check.warn(importable) 2023-11-29T19:42:13,165 /tmp/pip-build-env-ne7tuv0_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2023-11-29T19:42:13,165 !! 2023-11-29T19:42:13,166 ******************************************************************************** 2023-11-29T19:42:13,167 ############################ 2023-11-29T19:42:13,167 # Package would be ignored # 2023-11-29T19:42:13,168 ############################ 2023-11-29T19:42:13,168 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2023-11-29T19:42:13,169 but it is absent from setuptools' `packages` configuration. 2023-11-29T19:42:13,170 This leads to an ambiguous overall configuration. If you want to distribute this 2023-11-29T19:42:13,170 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2023-11-29T19:42:13,171 to the `packages` configuration field. 2023-11-29T19:42:13,172 Alternatively, you can also rely on setuptools' discovery methods 2023-11-29T19:42:13,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-11-29T19:42:13,173 instead of `find_packages(...)`/`find:`). 2023-11-29T19:42:13,175 You can read more about "package discovery" on setuptools documentation page: 2023-11-29T19:42:13,176 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-11-29T19:42:13,177 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2023-11-29T19:42:13,177 already explicitly excluding 'galaxy.tools.bundled.stats' via 2023-11-29T19:42:13,178 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-11-29T19:42:13,178 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-11-29T19:42:13,179 combination with a more fine grained `package-data` configuration. 2023-11-29T19:42:13,180 You can read more about "package data files" on setuptools documentation page: 2023-11-29T19:42:13,181 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-11-29T19:42:13,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-11-29T19:42:13,184 even if it does not contain any `.py` files. 2023-11-29T19:42:13,184 On the other hand, currently there is no concept of package data 2023-11-29T19:42:13,185 directory, all directories are treated like packages. 2023-11-29T19:42:13,185 ******************************************************************************** 2023-11-29T19:42:13,186 !! 2023-11-29T19:42:13,187 check.warn(importable) 2023-11-29T19:42:13,188 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2023-11-29T19:42:13,188 copying galaxy/py.typed -> build/lib/galaxy 2023-11-29T19:42:13,189 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,189 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,190 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,190 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,191 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,192 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,192 copying galaxy/dependencies/typecheck-requirements.txt -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,193 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,193 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2023-11-29T19:42:13,194 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2023-11-29T19:42:13,195 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2023-11-29T19:42:13,195 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,195 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,196 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,196 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,197 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,197 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,198 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,198 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,198 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,199 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,200 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,200 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,201 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,201 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,202 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,202 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2023-11-29T19:42:13,203 creating build/lib/galaxy/tools/bundled 2023-11-29T19:42:13,203 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2023-11-29T19:42:13,204 creating build/lib/galaxy/tools/bundled/data_export 2023-11-29T19:42:13,204 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2023-11-29T19:42:13,205 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2023-11-29T19:42:13,205 copying galaxy/tools/bundled/data_export/send.py -> build/lib/galaxy/tools/bundled/data_export 2023-11-29T19:42:13,206 copying galaxy/tools/bundled/data_export/send.xml -> build/lib/galaxy/tools/bundled/data_export 2023-11-29T19:42:13,206 creating build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,207 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,207 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,208 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,209 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,209 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,210 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,210 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,211 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,212 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,212 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,213 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,214 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,214 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,215 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,216 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,216 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,217 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,217 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,218 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,218 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,218 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,219 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,219 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,220 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,220 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,221 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,221 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,222 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,222 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,223 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,224 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,224 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,225 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,225 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,226 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,226 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,227 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,227 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2023-11-29T19:42:13,228 creating build/lib/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:13,228 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:13,229 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:13,229 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:13,230 creating build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,230 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,231 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,231 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,232 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,232 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2023-11-29T19:42:13,233 creating build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,233 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,234 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,234 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,234 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,236 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,236 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,237 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,237 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,238 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,238 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,239 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,239 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,240 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,240 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,241 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,242 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,242 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,243 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,243 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,244 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,244 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,245 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,245 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,246 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,246 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,247 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,247 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,248 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,249 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,249 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,250 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,251 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,251 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,251 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,252 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,253 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,253 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,254 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,254 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,255 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,255 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,256 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,257 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,257 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,258 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,259 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,260 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,260 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,261 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,262 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,262 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,263 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,263 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,264 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,264 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,265 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,266 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,266 copying galaxy/tools/bundled/filters/sorter.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,267 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,267 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,268 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,268 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,269 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,270 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,271 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,271 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,272 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,272 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,273 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,273 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,275 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,277 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,279 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,281 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2023-11-29T19:42:13,283 creating build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,284 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,286 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,288 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,291 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,294 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,296 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,298 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,300 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,303 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:13,305 creating build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,306 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,309 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,311 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,314 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,316 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,319 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,322 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,324 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,326 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,329 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,331 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,334 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,337 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,340 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,342 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,345 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,348 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,350 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,353 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,356 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,358 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,361 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,363 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,366 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,369 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,372 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,375 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,378 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,381 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,383 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,386 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,389 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2023-11-29T19:42:13,392 creating build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,394 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,396 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,399 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,403 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,406 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,409 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,412 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,416 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,418 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,421 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,424 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,426 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,430 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,433 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,435 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,438 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,441 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,443 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,446 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,449 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,452 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,455 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,458 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,460 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,464 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,466 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,470 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,472 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,476 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,479 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,481 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,484 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,487 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,490 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2023-11-29T19:42:13,493 creating build/lib/galaxy/tools/bundled/meme 2023-11-29T19:42:13,495 copying galaxy/tools/bundled/meme/__init__.py -> build/lib/galaxy/tools/bundled/meme 2023-11-29T19:42:13,497 copying galaxy/tools/bundled/meme/fimo.xml -> build/lib/galaxy/tools/bundled/meme 2023-11-29T19:42:13,501 copying galaxy/tools/bundled/meme/fimo_wrapper.py -> build/lib/galaxy/tools/bundled/meme 2023-11-29T19:42:13,503 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2023-11-29T19:42:13,507 creating build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,508 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,510 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,513 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,516 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,519 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,522 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,526 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:13,529 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,531 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,534 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,536 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,539 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,542 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,548 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,551 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,555 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,557 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:13,560 creating build/lib/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:13,561 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:13,564 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:13,567 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:13,570 creating build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,572 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,575 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,577 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,580 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,583 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,586 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,589 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,592 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,595 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,598 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,601 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,603 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,606 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,609 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,612 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,615 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,618 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,621 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,623 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,626 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,629 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,632 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,635 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,638 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,641 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:13,644 creating build/lib/galaxy/tools/bundled/plotting 2023-11-29T19:42:13,645 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2023-11-29T19:42:13,649 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2023-11-29T19:42:13,651 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2023-11-29T19:42:13,654 creating build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,656 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,658 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,662 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,665 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,667 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,670 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,673 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,676 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:13,679 creating build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,680 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,683 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,686 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,688 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,691 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:13,694 creating build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,695 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,699 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,701 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,704 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,708 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,711 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,714 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,717 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:13,721 creating build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,722 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,724 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,727 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,729 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,732 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,735 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,738 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,741 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,743 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,746 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2023-11-29T19:42:13,748 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2023-11-29T19:42:13,750 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:13,752 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:13,755 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:13,757 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:13,759 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:13,762 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2023-11-29T19:42:13,764 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2023-11-29T19:42:13,804 installing to build/bdist.linux-aarch64/wheel 2023-11-29T19:42:13,805 running install 2023-11-29T19:42:13,828 running install_lib 2023-11-29T19:42:13,835 creating build/bdist.linux-aarch64 2023-11-29T19:42:13,836 creating build/bdist.linux-aarch64/wheel 2023-11-29T19:42:13,837 creating build/bdist.linux-aarch64/wheel/galaxy_ext 2023-11-29T19:42:13,838 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-aarch64/wheel/galaxy_ext 2023-11-29T19:42:13,840 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy_ext 2023-11-29T19:42:13,843 creating build/bdist.linux-aarch64/wheel/galaxy_ext/metadata 2023-11-29T19:42:13,844 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/metadata 2023-11-29T19:42:13,846 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/metadata 2023-11-29T19:42:13,848 creating build/bdist.linux-aarch64/wheel/galaxy_ext/container_monitor 2023-11-29T19:42:13,849 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/container_monitor 2023-11-29T19:42:13,851 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/container_monitor 2023-11-29T19:42:13,853 creating build/bdist.linux-aarch64/wheel/galaxy_ext/expressions 2023-11-29T19:42:13,854 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/expressions 2023-11-29T19:42:13,856 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy_ext/expressions 2023-11-29T19:42:13,859 creating build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,860 copying build/lib/galaxy/di.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,862 creating build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,863 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,867 creating build/bdist.linux-aarch64/wheel/galaxy/workflow/refactor 2023-11-29T19:42:13,868 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/refactor 2023-11-29T19:42:13,871 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/refactor 2023-11-29T19:42:13,872 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/refactor 2023-11-29T19:42:13,876 creating build/bdist.linux-aarch64/wheel/galaxy/workflow/reports 2023-11-29T19:42:13,877 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/reports 2023-11-29T19:42:13,879 creating build/bdist.linux-aarch64/wheel/galaxy/workflow/reports/generators 2023-11-29T19:42:13,880 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/reports/generators 2023-11-29T19:42:13,882 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/reports/generators 2023-11-29T19:42:13,885 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,886 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,890 creating build/bdist.linux-aarch64/wheel/galaxy/workflow/schedulers 2023-11-29T19:42:13,891 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/schedulers 2023-11-29T19:42:13,893 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/schedulers 2023-11-29T19:42:13,895 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,900 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,903 creating build/bdist.linux-aarch64/wheel/galaxy/workflow/resources 2023-11-29T19:42:13,904 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-aarch64/wheel/galaxy/workflow/resources 2023-11-29T19:42:13,906 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow/resources 2023-11-29T19:42:13,909 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,912 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,915 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,917 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-aarch64/wheel/galaxy/workflow 2023-11-29T19:42:13,920 creating build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,921 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,924 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,925 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,928 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,931 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,933 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,935 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,937 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,939 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,941 copying build/lib/galaxy/dependencies/typecheck-requirements.txt -> build/bdist.linux-aarch64/wheel/galaxy/dependencies 2023-11-29T19:42:13,943 copying build/lib/galaxy/py.typed -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,945 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,948 creating build/bdist.linux-aarch64/wheel/galaxy/forms 2023-11-29T19:42:13,949 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/forms 2023-11-29T19:42:13,951 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-aarch64/wheel/galaxy/forms 2023-11-29T19:42:13,954 copying build/lib/galaxy/main_config.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,956 creating build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,957 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,960 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,962 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,965 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,968 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-aarch64/wheel/galaxy/authnz 2023-11-29T19:42:13,971 copying build/lib/galaxy/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,973 creating build/bdist.linux-aarch64/wheel/galaxy/app_unittest_utils 2023-11-29T19:42:13,974 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-aarch64/wheel/galaxy/app_unittest_utils 2023-11-29T19:42:13,978 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/app_unittest_utils 2023-11-29T19:42:13,979 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-aarch64/wheel/galaxy/app_unittest_utils 2023-11-29T19:42:13,982 copying build/lib/galaxy/queues.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:13,985 creating build/bdist.linux-aarch64/wheel/galaxy/celery 2023-11-29T19:42:13,985 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-aarch64/wheel/galaxy/celery 2023-11-29T19:42:13,988 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/celery 2023-11-29T19:42:13,991 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-aarch64/wheel/galaxy/celery 2023-11-29T19:42:13,993 creating build/bdist.linux-aarch64/wheel/galaxy/visualization 2023-11-29T19:42:13,995 creating build/bdist.linux-aarch64/wheel/galaxy/visualization/genome 2023-11-29T19:42:13,996 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/genome 2023-11-29T19:42:13,999 creating build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,000 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,002 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,005 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,007 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,010 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,012 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/plugins 2023-11-29T19:42:14,015 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization 2023-11-29T19:42:14,017 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization 2023-11-29T19:42:14,020 creating build/bdist.linux-aarch64/wheel/galaxy/visualization/tracks 2023-11-29T19:42:14,021 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/tracks 2023-11-29T19:42:14,024 creating build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,025 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,028 creating build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,029 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,032 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,034 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,037 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,039 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers/phyloviz 2023-11-29T19:42:14,041 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,043 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,047 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,050 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-aarch64/wheel/galaxy/visualization/data_providers 2023-11-29T19:42:14,053 creating build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,054 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/splitters 2023-11-29T19:42:14,055 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/splitters 2023-11-29T19:42:14,058 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/splitters 2023-11-29T19:42:14,060 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/splitters 2023-11-29T19:42:14,062 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,064 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,065 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,067 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,069 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,071 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli 2023-11-29T19:42:14,072 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli 2023-11-29T19:42:14,074 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli 2023-11-29T19:42:14,077 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:14,078 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:14,080 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:14,082 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/shell 2023-11-29T19:42:14,085 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,086 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,088 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,090 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,093 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,095 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,097 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/cli/job 2023-11-29T19:42:14,099 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,101 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,104 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,106 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/condor 2023-11-29T19:42:14,108 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/condor 2023-11-29T19:42:14,110 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,113 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:14,114 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:14,117 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:14,120 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:14,122 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util/job_script 2023-11-29T19:42:14,124 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/util 2023-11-29T19:42:14,126 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,129 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,131 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,134 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,137 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,139 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,142 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,145 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,148 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:14,149 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:14,152 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:14,154 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners/state_handlers 2023-11-29T19:42:14,156 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,159 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,162 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,164 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,167 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,171 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,174 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/runners 2023-11-29T19:42:14,177 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,180 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,182 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,185 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,190 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,193 creating build/bdist.linux-aarch64/wheel/galaxy/jobs/rules 2023-11-29T19:42:14,194 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs/rules 2023-11-29T19:42:14,196 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,198 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,202 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-aarch64/wheel/galaxy/jobs 2023-11-29T19:42:14,206 creating build/bdist.linux-aarch64/wheel/galaxy/actions 2023-11-29T19:42:14,206 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/actions 2023-11-29T19:42:14,208 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-aarch64/wheel/galaxy/actions 2023-11-29T19:42:14,212 creating build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,213 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,216 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,218 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,221 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,224 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,226 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,228 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,230 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,233 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,235 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,238 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,240 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,243 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,247 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,252 copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,255 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,257 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,259 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,261 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,264 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,266 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,269 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,272 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,275 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,277 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,280 copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,282 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,285 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,287 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,289 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,291 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,293 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,295 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,298 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,300 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,302 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,305 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,308 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,310 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,313 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,315 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,317 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,319 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,322 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,325 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,328 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,330 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,333 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,335 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,337 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,341 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,343 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,347 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,350 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,352 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,356 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,359 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-aarch64/wheel/galaxy/managers 2023-11-29T19:42:14,363 creating build/bdist.linux-aarch64/wheel/galaxy/work 2023-11-29T19:42:14,364 copying build/lib/galaxy/work/context.py -> build/bdist.linux-aarch64/wheel/galaxy/work 2023-11-29T19:42:14,366 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/work 2023-11-29T19:42:14,368 creating build/bdist.linux-aarch64/wheel/galaxy/webhooks 2023-11-29T19:42:14,369 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/webhooks 2023-11-29T19:42:14,372 copying build/lib/galaxy/main.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:14,375 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed 2023-11-29T19:42:14,376 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,377 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,380 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,383 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,385 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,388 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,389 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,392 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,396 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,398 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,402 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,404 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/util 2023-11-29T19:42:14,406 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed 2023-11-29T19:42:14,408 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed 2023-11-29T19:42:14,410 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:14,412 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:14,413 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:14,415 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2023-11-29T19:42:14,418 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:14,420 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:14,424 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:14,425 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:14,427 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/metadata 2023-11-29T19:42:14,430 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:14,433 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install 2023-11-29T19:42:14,436 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:14,437 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:14,440 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:14,443 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/galaxy_install/tools 2023-11-29T19:42:14,445 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/metadata 2023-11-29T19:42:14,446 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/metadata 2023-11-29T19:42:14,450 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/metadata 2023-11-29T19:42:14,451 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed 2023-11-29T19:42:14,454 creating build/bdist.linux-aarch64/wheel/galaxy/tool_shed/tools 2023-11-29T19:42:14,454 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/tools 2023-11-29T19:42:14,456 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/tools 2023-11-29T19:42:14,459 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tool_shed/tools 2023-11-29T19:42:14,462 creating build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,463 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,466 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,469 creating build/bdist.linux-aarch64/wheel/galaxy/tools/util 2023-11-29T19:42:14,469 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/util 2023-11-29T19:42:14,473 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/util 2023-11-29T19:42:14,475 creating build/bdist.linux-aarch64/wheel/galaxy/tools/util/galaxyops 2023-11-29T19:42:14,476 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/util/galaxyops 2023-11-29T19:42:14,479 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,481 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,483 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,487 creating build/bdist.linux-aarch64/wheel/galaxy/tools/filters 2023-11-29T19:42:14,488 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/filters 2023-11-29T19:42:14,490 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,492 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,496 creating build/bdist.linux-aarch64/wheel/galaxy/tools/search 2023-11-29T19:42:14,497 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/search 2023-11-29T19:42:14,500 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,503 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,505 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,507 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,509 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,512 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,514 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,517 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,522 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,525 creating build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,526 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,528 copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,530 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,533 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,536 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,539 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,542 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,545 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,548 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,553 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,555 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,558 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/parameters 2023-11-29T19:42:14,562 creating build/bdist.linux-aarch64/wheel/galaxy/tools/data 2023-11-29T19:42:14,563 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/data 2023-11-29T19:42:14,565 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,568 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,570 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,572 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,575 creating build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,577 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,579 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,582 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,584 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,588 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,590 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,592 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,595 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/actions 2023-11-29T19:42:14,598 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,600 creating build/bdist.linux-aarch64/wheel/galaxy/tools/data_manager 2023-11-29T19:42:14,601 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/data_manager 2023-11-29T19:42:14,603 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/data_manager 2023-11-29T19:42:14,606 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,608 creating build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,609 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,611 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,614 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,616 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,618 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,620 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/imp_exp 2023-11-29T19:42:14,623 creating build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,624 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,626 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,628 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,630 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,632 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-aarch64/wheel/galaxy/tools/expressions 2023-11-29T19:42:14,634 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,636 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,638 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:14,642 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled 2023-11-29T19:42:14,644 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,646 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,648 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,650 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,652 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,654 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,657 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,659 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,661 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,663 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,665 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,667 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,669 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,671 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,673 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,675 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,677 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,680 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,682 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,684 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,686 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,689 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,691 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,694 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,696 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,698 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,700 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,703 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,706 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,708 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,710 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,712 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,714 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,716 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,718 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,720 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,722 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,724 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,726 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_source 2023-11-29T19:42:14,730 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,731 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,733 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,735 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,738 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,740 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,742 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,744 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,747 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,749 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,751 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,753 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,755 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,758 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,760 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,762 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,764 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,767 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,770 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,773 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,775 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,777 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,779 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,781 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,784 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,786 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,788 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,790 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,792 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,794 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,796 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,798 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,800 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,803 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,804 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,806 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,808 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,811 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,813 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,815 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,817 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,820 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,823 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters/gff 2023-11-29T19:42:14,825 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,827 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,830 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,832 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,834 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,836 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,837 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,840 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,842 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,844 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,846 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,848 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,850 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,853 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,855 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,857 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,859 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,861 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,864 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,866 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,868 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,871 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,874 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,877 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,879 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,881 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,884 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,886 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,888 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,891 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,893 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,895 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,898 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,900 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,902 copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,904 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,906 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,908 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,910 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,912 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,915 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,917 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/filters 2023-11-29T19:42:14,920 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_export 2023-11-29T19:42:14,921 copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_export 2023-11-29T19:42:14,923 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_export 2023-11-29T19:42:14,926 copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_export 2023-11-29T19:42:14,928 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/data_export 2023-11-29T19:42:14,931 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,932 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,934 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,936 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,938 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,941 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_assembly 2023-11-29T19:42:14,944 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,945 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,948 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,951 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,953 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,956 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,957 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,960 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,962 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,964 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,966 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,968 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,970 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,973 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,976 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,978 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,980 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,983 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,985 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,988 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,990 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,992 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,994 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,997 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:14,999 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,002 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,004 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,006 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,008 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,011 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,013 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,015 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,017 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,020 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,022 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/maf 2023-11-29T19:42:15,025 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/meme 2023-11-29T19:42:15,026 copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/meme 2023-11-29T19:42:15,028 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/meme 2023-11-29T19:42:15,031 copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/meme 2023-11-29T19:42:15,033 copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/meme 2023-11-29T19:42:15,035 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled 2023-11-29T19:42:15,038 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,039 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,042 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,044 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,047 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,049 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,052 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,054 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,056 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,059 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,061 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,063 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,065 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,068 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,070 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,072 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,075 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,077 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,079 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,082 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,085 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,087 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,089 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,091 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,093 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,095 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,097 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,099 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,101 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,103 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,105 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,108 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,110 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/interactive 2023-11-29T19:42:15,113 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,114 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,117 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,120 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,122 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,124 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,126 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,129 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,131 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,133 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,136 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/stats 2023-11-29T19:42:15,139 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,140 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,142 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,144 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,146 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,149 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,152 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,154 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,156 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,158 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/next_gen_conversion 2023-11-29T19:42:15,161 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,162 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,165 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,167 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,169 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,172 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,174 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,177 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,179 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,181 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,184 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,186 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,188 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,190 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,193 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,195 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,197 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,199 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,202 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,204 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,206 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,208 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,210 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,213 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,215 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,218 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/phenotype_association 2023-11-29T19:42:15,221 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,222 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,224 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,227 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,229 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,231 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,234 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,236 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/metag_tools 2023-11-29T19:42:15,239 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:15,239 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:15,242 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:15,243 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/ngs_simulation 2023-11-29T19:42:15,246 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:15,247 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:15,250 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:15,251 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/expression_tools 2023-11-29T19:42:15,255 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,256 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,258 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,260 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,262 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,264 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/extract 2023-11-29T19:42:15,267 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/plotting 2023-11-29T19:42:15,268 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/plotting 2023-11-29T19:42:15,270 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/plotting 2023-11-29T19:42:15,273 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/plotting 2023-11-29T19:42:15,276 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,277 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,280 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,282 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,284 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,286 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,289 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,291 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,293 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/solid_tools 2023-11-29T19:42:15,296 creating build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,296 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,299 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,302 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,305 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,307 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,310 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,312 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,314 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/bundled/sr_mapping 2023-11-29T19:42:15,317 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:15,319 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:15,322 copying build/lib/galaxy/tools/test.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:15,325 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:15,327 creating build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports 2023-11-29T19:42:15,328 creating build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,330 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,332 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,334 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,336 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,339 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,341 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,345 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,347 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,350 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports/plugins 2023-11-29T19:42:15,352 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-aarch64/wheel/galaxy/tools/error_reports 2023-11-29T19:42:15,354 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-aarch64/wheel/galaxy/tools 2023-11-29T19:42:15,356 copying build/lib/galaxy/app.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:15,359 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:15,362 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-aarch64/wheel/galaxy 2023-11-29T19:42:15,365 creating build/bdist.linux-aarch64/wheel/tool_shed_client 2023-11-29T19:42:15,366 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-aarch64/wheel/tool_shed_client 2023-11-29T19:42:15,368 creating build/bdist.linux-aarch64/wheel/tool_shed_client/schema 2023-11-29T19:42:15,369 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-aarch64/wheel/tool_shed_client/schema 2023-11-29T19:42:15,372 running install_egg_info 2023-11-29T19:42:15,383 Copying galaxy_app.egg-info to build/bdist.linux-aarch64/wheel/galaxy_app-23.1.2-py3.11.egg-info 2023-11-29T19:42:15,398 running install_scripts 2023-11-29T19:42:15,428 creating build/bdist.linux-aarch64/wheel/galaxy_app-23.1.2.dist-info/WHEEL 2023-11-29T19:42:15,430 creating '/tmp/pip-wheel-jd4jgdba/.tmp-1zddf29d/galaxy_app-23.1.2-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it 2023-11-29T19:42:15,433 adding 'galaxy/__init__.py' 2023-11-29T19:42:15,438 adding 'galaxy/app.py' 2023-11-29T19:42:15,440 adding 'galaxy/config_watchers.py' 2023-11-29T19:42:15,442 adding 'galaxy/di.py' 2023-11-29T19:42:15,445 adding 'galaxy/main.py' 2023-11-29T19:42:15,447 adding 'galaxy/main_config.py' 2023-11-29T19:42:15,449 adding 'galaxy/py.typed' 2023-11-29T19:42:15,451 adding 'galaxy/queue_worker.py' 2023-11-29T19:42:15,453 adding 'galaxy/queues.py' 2023-11-29T19:42:15,455 adding 'galaxy/structured_app.py' 2023-11-29T19:42:15,457 adding 'galaxy/actions/__init__.py' 2023-11-29T19:42:15,460 adding 'galaxy/actions/library.py' 2023-11-29T19:42:15,462 adding 'galaxy/app_unittest_utils/__init__.py' 2023-11-29T19:42:15,465 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2023-11-29T19:42:15,466 adding 'galaxy/app_unittest_utils/tools_support.py' 2023-11-29T19:42:15,469 adding 'galaxy/authnz/__init__.py' 2023-11-29T19:42:15,472 adding 'galaxy/authnz/custos_authnz.py' 2023-11-29T19:42:15,476 adding 'galaxy/authnz/managers.py' 2023-11-29T19:42:15,479 adding 'galaxy/authnz/psa_authnz.py' 2023-11-29T19:42:15,481 adding 'galaxy/authnz/util.py' 2023-11-29T19:42:15,484 adding 'galaxy/celery/__init__.py' 2023-11-29T19:42:15,486 adding 'galaxy/celery/_serialization.py' 2023-11-29T19:42:15,488 adding 'galaxy/celery/tasks.py' 2023-11-29T19:42:15,492 adding 'galaxy/dependencies/__init__.py' 2023-11-29T19:42:15,493 adding 'galaxy/dependencies/conditional-requirements.txt' 2023-11-29T19:42:15,495 adding 'galaxy/dependencies/dev-requirements.txt' 2023-11-29T19:42:15,497 adding 'galaxy/dependencies/lint-requirements.txt' 2023-11-29T19:42:15,499 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2023-11-29T19:42:15,501 adding 'galaxy/dependencies/pinned-requirements.txt' 2023-11-29T19:42:15,502 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2023-11-29T19:42:15,504 adding 'galaxy/dependencies/typecheck-requirements.txt' 2023-11-29T19:42:15,506 adding 'galaxy/dependencies/update.sh' 2023-11-29T19:42:15,508 adding 'galaxy/dependencies/update_lint_requirements.sh' 2023-11-29T19:42:15,510 adding 'galaxy/forms/__init__.py' 2023-11-29T19:42:15,512 adding 'galaxy/forms/forms.py' 2023-11-29T19:42:15,529 adding 'galaxy/jobs/__init__.py' 2023-11-29T19:42:15,535 adding 'galaxy/jobs/command_factory.py' 2023-11-29T19:42:15,544 adding 'galaxy/jobs/dynamic_tool_destination.py' 2023-11-29T19:42:15,551 adding 'galaxy/jobs/handler.py' 2023-11-29T19:42:15,553 adding 'galaxy/jobs/manager.py' 2023-11-29T19:42:15,556 adding 'galaxy/jobs/mapper.py' 2023-11-29T19:42:15,558 adding 'galaxy/jobs/rule_helper.py' 2023-11-29T19:42:15,559 adding 'galaxy/jobs/stock_rules.py' 2023-11-29T19:42:15,562 adding 'galaxy/jobs/rules/__init__.py' 2023-11-29T19:42:15,568 adding 'galaxy/jobs/runners/__init__.py' 2023-11-29T19:42:15,571 adding 'galaxy/jobs/runners/aws.py' 2023-11-29T19:42:15,574 adding 'galaxy/jobs/runners/chronos.py' 2023-11-29T19:42:15,576 adding 'galaxy/jobs/runners/cli.py' 2023-11-29T19:42:15,578 adding 'galaxy/jobs/runners/condor.py' 2023-11-29T19:42:15,582 adding 'galaxy/jobs/runners/drmaa.py' 2023-11-29T19:42:15,585 adding 'galaxy/jobs/runners/godocker.py' 2023-11-29T19:42:15,590 adding 'galaxy/jobs/runners/kubernetes.py' 2023-11-29T19:42:15,593 adding 'galaxy/jobs/runners/local.py' 2023-11-29T19:42:15,597 adding 'galaxy/jobs/runners/pbs.py' 2023-11-29T19:42:15,604 adding 'galaxy/jobs/runners/pulsar.py' 2023-11-29T19:42:15,606 adding 'galaxy/jobs/runners/slurm.py' 2023-11-29T19:42:15,608 adding 'galaxy/jobs/runners/state_handler_factory.py' 2023-11-29T19:42:15,610 adding 'galaxy/jobs/runners/tasks.py' 2023-11-29T19:42:15,614 adding 'galaxy/jobs/runners/univa.py' 2023-11-29T19:42:15,617 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2023-11-29T19:42:15,619 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2023-11-29T19:42:15,621 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2023-11-29T19:42:15,623 adding 'galaxy/jobs/runners/util/__init__.py' 2023-11-29T19:42:15,625 adding 'galaxy/jobs/runners/util/env.py' 2023-11-29T19:42:15,626 adding 'galaxy/jobs/runners/util/external.py' 2023-11-29T19:42:15,628 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2023-11-29T19:42:15,630 adding 'galaxy/jobs/runners/util/kill.py' 2023-11-29T19:42:15,631 adding 'galaxy/jobs/runners/util/process_groups.py' 2023-11-29T19:42:15,634 adding 'galaxy/jobs/runners/util/pykube_util.py' 2023-11-29T19:42:15,635 adding 'galaxy/jobs/runners/util/sudo.py' 2023-11-29T19:42:15,637 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2023-11-29T19:42:15,639 adding 'galaxy/jobs/runners/util/cli/factory.py' 2023-11-29T19:42:15,641 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2023-11-29T19:42:15,643 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2023-11-29T19:42:15,645 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2023-11-29T19:42:15,647 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2023-11-29T19:42:15,648 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2023-11-29T19:42:15,650 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2023-11-29T19:42:15,652 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2023-11-29T19:42:15,654 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2023-11-29T19:42:15,656 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2023-11-29T19:42:15,658 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2023-11-29T19:42:15,660 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2023-11-29T19:42:15,662 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2023-11-29T19:42:15,664 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2023-11-29T19:42:15,666 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2023-11-29T19:42:15,668 adding 'galaxy/jobs/splitters/__init__.py' 2023-11-29T19:42:15,669 adding 'galaxy/jobs/splitters/basic.py' 2023-11-29T19:42:15,671 adding 'galaxy/jobs/splitters/multi.py' 2023-11-29T19:42:15,675 adding 'galaxy/managers/__init__.py' 2023-11-29T19:42:15,677 adding 'galaxy/managers/annotatable.py' 2023-11-29T19:42:15,678 adding 'galaxy/managers/api_keys.py' 2023-11-29T19:42:15,686 adding 'galaxy/managers/base.py' 2023-11-29T19:42:15,688 adding 'galaxy/managers/citations.py' 2023-11-29T19:42:15,691 adding 'galaxy/managers/cloud.py' 2023-11-29T19:42:15,693 adding 'galaxy/managers/cloudauthzs.py' 2023-11-29T19:42:15,697 adding 'galaxy/managers/collections.py' 2023-11-29T19:42:15,700 adding 'galaxy/managers/collections_util.py' 2023-11-29T19:42:15,702 adding 'galaxy/managers/configuration.py' 2023-11-29T19:42:15,705 adding 'galaxy/managers/context.py' 2023-11-29T19:42:15,710 adding 'galaxy/managers/datasets.py' 2023-11-29T19:42:15,712 adding 'galaxy/managers/datatypes.py' 2023-11-29T19:42:15,713 adding 'galaxy/managers/deletable.py' 2023-11-29T19:42:15,715 adding 'galaxy/managers/display_applications.py' 2023-11-29T19:42:15,717 adding 'galaxy/managers/executables.py' 2023-11-29T19:42:15,718 adding 'galaxy/managers/export_tracker.py' 2023-11-29T19:42:15,721 adding 'galaxy/managers/folders.py' 2023-11-29T19:42:15,723 adding 'galaxy/managers/genomes.py' 2023-11-29T19:42:15,725 adding 'galaxy/managers/group_roles.py' 2023-11-29T19:42:15,727 adding 'galaxy/managers/group_users.py' 2023-11-29T19:42:15,728 adding 'galaxy/managers/groups.py' 2023-11-29T19:42:15,732 adding 'galaxy/managers/hdas.py' 2023-11-29T19:42:15,734 adding 'galaxy/managers/hdcas.py' 2023-11-29T19:42:15,739 adding 'galaxy/managers/histories.py' 2023-11-29T19:42:15,743 adding 'galaxy/managers/history_contents.py' 2023-11-29T19:42:15,745 adding 'galaxy/managers/interactivetool.py' 2023-11-29T19:42:15,747 adding 'galaxy/managers/job_connections.py' 2023-11-29T19:42:15,752 adding 'galaxy/managers/jobs.py' 2023-11-29T19:42:15,754 adding 'galaxy/managers/lddas.py' 2023-11-29T19:42:15,757 adding 'galaxy/managers/libraries.py' 2023-11-29T19:42:15,759 adding 'galaxy/managers/library_datasets.py' 2023-11-29T19:42:15,771 adding 'galaxy/managers/licenses.json' 2023-11-29T19:42:15,774 adding 'galaxy/managers/licenses.py' 2023-11-29T19:42:15,775 adding 'galaxy/managers/markdown_export_base.css' 2023-11-29T19:42:15,777 adding 'galaxy/managers/markdown_parse.py' 2023-11-29T19:42:15,781 adding 'galaxy/managers/markdown_util.py' 2023-11-29T19:42:15,783 adding 'galaxy/managers/metrics.py' 2023-11-29T19:42:15,785 adding 'galaxy/managers/model_stores.py' 2023-11-29T19:42:15,787 adding 'galaxy/managers/notification.py' 2023-11-29T19:42:15,791 adding 'galaxy/managers/pages.py' 2023-11-29T19:42:15,793 adding 'galaxy/managers/quotas.py' 2023-11-29T19:42:15,795 adding 'galaxy/managers/ratable.py' 2023-11-29T19:42:15,797 adding 'galaxy/managers/rbac_secured.py' 2023-11-29T19:42:15,798 adding 'galaxy/managers/remote_files.py' 2023-11-29T19:42:15,800 adding 'galaxy/managers/roles.py' 2023-11-29T19:42:15,802 adding 'galaxy/managers/secured.py' 2023-11-29T19:42:15,803 adding 'galaxy/managers/session.py' 2023-11-29T19:42:15,806 adding 'galaxy/managers/sharable.py' 2023-11-29T19:42:15,808 adding 'galaxy/managers/taggable.py' 2023-11-29T19:42:15,809 adding 'galaxy/managers/tags.py' 2023-11-29T19:42:15,811 adding 'galaxy/managers/tasks.py' 2023-11-29T19:42:15,812 adding 'galaxy/managers/tool_data.py' 2023-11-29T19:42:15,814 adding 'galaxy/managers/tools.py' 2023-11-29T19:42:15,818 adding 'galaxy/managers/users.py' 2023-11-29T19:42:15,820 adding 'galaxy/managers/visualizations.py' 2023-11-29T19:42:15,831 adding 'galaxy/managers/workflows.py' 2023-11-29T19:42:15,833 adding 'galaxy/tool_shed/__init__.py' 2023-11-29T19:42:15,835 adding 'galaxy/tool_shed/cache.py' 2023-11-29T19:42:15,836 adding 'galaxy/tool_shed/repository_type.py' 2023-11-29T19:42:15,838 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2023-11-29T19:42:15,843 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2023-11-29T19:42:15,849 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2023-11-29T19:42:15,851 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2023-11-29T19:42:15,853 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2023-11-29T19:42:15,855 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2023-11-29T19:42:15,857 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2023-11-29T19:42:15,861 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2023-11-29T19:42:15,863 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2023-11-29T19:42:15,865 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2023-11-29T19:42:15,869 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2023-11-29T19:42:15,871 adding 'galaxy/tool_shed/metadata/__init__.py' 2023-11-29T19:42:15,877 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2023-11-29T19:42:15,879 adding 'galaxy/tool_shed/tools/__init__.py' 2023-11-29T19:42:15,881 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2023-11-29T19:42:15,883 adding 'galaxy/tool_shed/tools/tool_validator.py' 2023-11-29T19:42:15,885 adding 'galaxy/tool_shed/util/__init__.py' 2023-11-29T19:42:15,886 adding 'galaxy/tool_shed/util/basic_util.py' 2023-11-29T19:42:15,888 adding 'galaxy/tool_shed/util/container_util.py' 2023-11-29T19:42:15,890 adding 'galaxy/tool_shed/util/dependency_display.py' 2023-11-29T19:42:15,892 adding 'galaxy/tool_shed/util/hg_util.py' 2023-11-29T19:42:15,894 adding 'galaxy/tool_shed/util/metadata_util.py' 2023-11-29T19:42:15,898 adding 'galaxy/tool_shed/util/repository_util.py' 2023-11-29T19:42:15,900 adding 'galaxy/tool_shed/util/shed_util_common.py' 2023-11-29T19:42:15,903 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2023-11-29T19:42:15,905 adding 'galaxy/tool_shed/util/tool_util.py' 2023-11-29T19:42:15,909 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2023-11-29T19:42:15,931 adding 'galaxy/tools/__init__.py' 2023-11-29T19:42:15,934 adding 'galaxy/tools/apply_rules.xml' 2023-11-29T19:42:15,935 adding 'galaxy/tools/biotools.py' 2023-11-29T19:42:15,937 adding 'galaxy/tools/build_list.xml' 2023-11-29T19:42:15,938 adding 'galaxy/tools/build_list_1.2.0.xml' 2023-11-29T19:42:15,940 adding 'galaxy/tools/cache.py' 2023-11-29T19:42:15,944 adding 'galaxy/tools/data_fetch.py' 2023-11-29T19:42:15,946 adding 'galaxy/tools/data_fetch.xml' 2023-11-29T19:42:15,947 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2023-11-29T19:42:15,949 adding 'galaxy/tools/errors.py' 2023-11-29T19:42:15,954 adding 'galaxy/tools/evaluation.py' 2023-11-29T19:42:15,955 adding 'galaxy/tools/exception_handling.py' 2023-11-29T19:42:15,959 adding 'galaxy/tools/execute.py' 2023-11-29T19:42:15,961 adding 'galaxy/tools/extract_dataset.xml' 2023-11-29T19:42:15,962 adding 'galaxy/tools/filter_empty_collection.xml' 2023-11-29T19:42:15,964 adding 'galaxy/tools/filter_failed_collection.xml' 2023-11-29T19:42:15,965 adding 'galaxy/tools/filter_from_file.xml' 2023-11-29T19:42:15,966 adding 'galaxy/tools/flatten_collection.xml' 2023-11-29T19:42:15,968 adding 'galaxy/tools/merge_collection.xml' 2023-11-29T19:42:15,971 adding 'galaxy/tools/recommendations.py' 2023-11-29T19:42:15,973 adding 'galaxy/tools/relabel_from_file.xml' 2023-11-29T19:42:15,974 adding 'galaxy/tools/remote_tool_eval.py' 2023-11-29T19:42:15,976 adding 'galaxy/tools/repositories.py' 2023-11-29T19:42:15,978 adding 'galaxy/tools/sort_collection_list.xml' 2023-11-29T19:42:15,979 adding 'galaxy/tools/special_tools.py' 2023-11-29T19:42:15,981 adding 'galaxy/tools/tag_collection_from_file.xml' 2023-11-29T19:42:15,983 adding 'galaxy/tools/test.py' 2023-11-29T19:42:15,985 adding 'galaxy/tools/unzip_collection.xml' 2023-11-29T19:42:15,988 adding 'galaxy/tools/wrappers.py' 2023-11-29T19:42:15,990 adding 'galaxy/tools/zip_collection.xml' 2023-11-29T19:42:15,998 adding 'galaxy/tools/actions/__init__.py' 2023-11-29T19:42:16,000 adding 'galaxy/tools/actions/data_manager.py' 2023-11-29T19:42:16,002 adding 'galaxy/tools/actions/data_source.py' 2023-11-29T19:42:16,003 adding 'galaxy/tools/actions/history_imp_exp.py' 2023-11-29T19:42:16,005 adding 'galaxy/tools/actions/metadata.py' 2023-11-29T19:42:16,007 adding 'galaxy/tools/actions/model_operations.py' 2023-11-29T19:42:16,008 adding 'galaxy/tools/actions/upload.py' 2023-11-29T19:42:16,011 adding 'galaxy/tools/actions/upload_common.py' 2023-11-29T19:42:16,013 adding 'galaxy/tools/bundled/__init__.py' 2023-11-29T19:42:16,015 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2023-11-29T19:42:16,017 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2023-11-29T19:42:16,018 adding 'galaxy/tools/bundled/data_export/send.py' 2023-11-29T19:42:16,020 adding 'galaxy/tools/bundled/data_export/send.xml' 2023-11-29T19:42:16,022 adding 'galaxy/tools/bundled/data_source/__init__.py' 2023-11-29T19:42:16,024 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2023-11-29T19:42:16,025 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2023-11-29T19:42:16,027 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2023-11-29T19:42:16,028 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2023-11-29T19:42:16,030 adding 'galaxy/tools/bundled/data_source/data_source.py' 2023-11-29T19:42:16,031 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2023-11-29T19:42:16,033 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2023-11-29T19:42:16,034 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2023-11-29T19:42:16,036 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2023-11-29T19:42:16,037 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2023-11-29T19:42:16,039 adding 'galaxy/tools/bundled/data_source/genbank.py' 2023-11-29T19:42:16,040 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2023-11-29T19:42:16,041 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2023-11-29T19:42:16,043 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2023-11-29T19:42:16,044 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2023-11-29T19:42:16,046 adding 'galaxy/tools/bundled/data_source/import.py' 2023-11-29T19:42:16,047 adding 'galaxy/tools/bundled/data_source/import.xml' 2023-11-29T19:42:16,048 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2023-11-29T19:42:16,050 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2023-11-29T19:42:16,052 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2023-11-29T19:42:16,054 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2023-11-29T19:42:16,056 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2023-11-29T19:42:16,058 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2023-11-29T19:42:16,061 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2023-11-29T19:42:16,063 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2023-11-29T19:42:16,064 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2023-11-29T19:42:16,065 adding 'galaxy/tools/bundled/data_source/sra.xml' 2023-11-29T19:42:16,067 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2023-11-29T19:42:16,068 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2023-11-29T19:42:16,070 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2023-11-29T19:42:16,072 adding 'galaxy/tools/bundled/data_source/upload.py' 2023-11-29T19:42:16,074 adding 'galaxy/tools/bundled/data_source/upload.xml' 2023-11-29T19:42:16,076 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2023-11-29T19:42:16,077 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2023-11-29T19:42:16,079 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2023-11-29T19:42:16,081 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2023-11-29T19:42:16,082 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2023-11-29T19:42:16,084 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2023-11-29T19:42:16,086 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2023-11-29T19:42:16,088 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2023-11-29T19:42:16,090 adding 'galaxy/tools/bundled/extract/__init__.py' 2023-11-29T19:42:16,092 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2023-11-29T19:42:16,094 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2023-11-29T19:42:16,095 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2023-11-29T19:42:16,097 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2023-11-29T19:42:16,100 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2023-11-29T19:42:16,102 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2023-11-29T19:42:16,103 adding 'galaxy/tools/bundled/filters/__init__.py' 2023-11-29T19:42:16,105 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2023-11-29T19:42:16,106 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2023-11-29T19:42:16,108 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2023-11-29T19:42:16,109 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2023-11-29T19:42:16,111 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2023-11-29T19:42:16,113 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2023-11-29T19:42:16,114 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2023-11-29T19:42:16,116 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2023-11-29T19:42:16,117 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2023-11-29T19:42:16,119 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2023-11-29T19:42:16,120 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2023-11-29T19:42:16,122 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2023-11-29T19:42:16,123 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2023-11-29T19:42:16,125 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2023-11-29T19:42:16,126 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2023-11-29T19:42:16,127 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2023-11-29T19:42:16,129 adding 'galaxy/tools/bundled/filters/compare.xml' 2023-11-29T19:42:16,130 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2023-11-29T19:42:16,131 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2023-11-29T19:42:16,133 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2023-11-29T19:42:16,134 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2023-11-29T19:42:16,135 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2023-11-29T19:42:16,137 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2023-11-29T19:42:16,138 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2023-11-29T19:42:16,140 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2023-11-29T19:42:16,141 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2023-11-29T19:42:16,143 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2023-11-29T19:42:16,144 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2023-11-29T19:42:16,146 adding 'galaxy/tools/bundled/filters/grep.py' 2023-11-29T19:42:16,148 adding 'galaxy/tools/bundled/filters/grep.xml' 2023-11-29T19:42:16,149 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2023-11-29T19:42:16,151 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2023-11-29T19:42:16,152 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2023-11-29T19:42:16,154 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2023-11-29T19:42:16,156 adding 'galaxy/tools/bundled/filters/join.py' 2023-11-29T19:42:16,158 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2023-11-29T19:42:16,159 adding 'galaxy/tools/bundled/filters/joiner.xml' 2023-11-29T19:42:16,161 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2023-11-29T19:42:16,162 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2023-11-29T19:42:16,164 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2023-11-29T19:42:16,165 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2023-11-29T19:42:16,166 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2023-11-29T19:42:16,168 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2023-11-29T19:42:16,169 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2023-11-29T19:42:16,171 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2023-11-29T19:42:16,172 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2023-11-29T19:42:16,174 adding 'galaxy/tools/bundled/filters/randomlines.py' 2023-11-29T19:42:16,175 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2023-11-29T19:42:16,177 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2023-11-29T19:42:16,178 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2023-11-29T19:42:16,179 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2023-11-29T19:42:16,181 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2023-11-29T19:42:16,187 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2023-11-29T19:42:16,189 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2023-11-29T19:42:16,190 adding 'galaxy/tools/bundled/filters/sorter.py' 2023-11-29T19:42:16,192 adding 'galaxy/tools/bundled/filters/sorter.xml' 2023-11-29T19:42:16,193 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2023-11-29T19:42:16,194 adding 'galaxy/tools/bundled/filters/trimmer.py' 2023-11-29T19:42:16,196 adding 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'galaxy/tools/bundled/maf/maf_filter.py' 2023-11-29T19:42:16,302 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2023-11-29T19:42:16,303 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2023-11-29T19:42:16,305 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2023-11-29T19:42:16,306 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2023-11-29T19:42:16,307 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2023-11-29T19:42:16,309 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2023-11-29T19:42:16,310 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2023-11-29T19:42:16,312 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2023-11-29T19:42:16,313 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2023-11-29T19:42:16,315 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2023-11-29T19:42:16,317 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2023-11-29T19:42:16,318 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 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'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2023-11-29T19:42:16,467 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2023-11-29T19:42:16,469 adding 'galaxy/tools/bundled/stats/__init__.py' 2023-11-29T19:42:16,470 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2023-11-29T19:42:16,472 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2023-11-29T19:42:16,474 adding 'galaxy/tools/bundled/stats/filtering.py' 2023-11-29T19:42:16,476 adding 'galaxy/tools/bundled/stats/filtering.xml' 2023-11-29T19:42:16,478 adding 'galaxy/tools/bundled/stats/grouping.py' 2023-11-29T19:42:16,479 adding 'galaxy/tools/bundled/stats/grouping.xml' 2023-11-29T19:42:16,481 adding 'galaxy/tools/bundled/stats/gsummary.py' 2023-11-29T19:42:16,483 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2023-11-29T19:42:16,484 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2023-11-29T19:42:16,487 adding 'galaxy/tools/data/__init__.py' 2023-11-29T19:42:16,488 adding 'galaxy/tools/data_manager/__init__.py' 2023-11-29T19:42:16,491 adding 'galaxy/tools/data_manager/manager.py' 2023-11-29T19:42:16,493 adding 'galaxy/tools/error_reports/__init__.py' 2023-11-29T19:42:16,495 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2023-11-29T19:42:16,497 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2023-11-29T19:42:16,498 adding 'galaxy/tools/error_reports/plugins/email.py' 2023-11-29T19:42:16,500 adding 'galaxy/tools/error_reports/plugins/github.py' 2023-11-29T19:42:16,502 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2023-11-29T19:42:16,504 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2023-11-29T19:42:16,505 adding 'galaxy/tools/error_reports/plugins/json.py' 2023-11-29T19:42:16,506 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2023-11-29T19:42:16,508 adding 'galaxy/tools/error_reports/plugins/slack.py' 2023-11-29T19:42:16,510 adding 'galaxy/tools/expressions/__init__.py' 2023-11-29T19:42:16,511 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2023-11-29T19:42:16,513 adding 'galaxy/tools/expressions/evaluation.py' 2023-11-29T19:42:16,514 adding 'galaxy/tools/expressions/script.py' 2023-11-29T19:42:16,515 adding 'galaxy/tools/expressions/util.py' 2023-11-29T19:42:16,517 adding 'galaxy/tools/filters/__init__.py' 2023-11-29T19:42:16,519 adding 'galaxy/tools/imp_exp/__init__.py' 2023-11-29T19:42:16,521 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2023-11-29T19:42:16,522 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2023-11-29T19:42:16,524 adding 'galaxy/tools/imp_exp/export_history.py' 2023-11-29T19:42:16,525 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2023-11-29T19:42:16,526 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2023-11-29T19:42:16,530 adding 'galaxy/tools/parameters/__init__.py' 2023-11-29T19:42:16,543 adding 'galaxy/tools/parameters/basic.py' 2023-11-29T19:42:16,545 adding 'galaxy/tools/parameters/dataset_matcher.py' 2023-11-29T19:42:16,550 adding 'galaxy/tools/parameters/dynamic_options.py' 2023-11-29T19:42:16,554 adding 'galaxy/tools/parameters/grouping.py' 2023-11-29T19:42:16,556 adding 'galaxy/tools/parameters/history_query.py' 2023-11-29T19:42:16,557 adding 'galaxy/tools/parameters/input_translation.py' 2023-11-29T19:42:16,559 adding 'galaxy/tools/parameters/meta.py' 2023-11-29T19:42:16,561 adding 'galaxy/tools/parameters/sanitize.py' 2023-11-29T19:42:16,565 adding 'galaxy/tools/parameters/validation.py' 2023-11-29T19:42:16,567 adding 'galaxy/tools/parameters/wrapped.py' 2023-11-29T19:42:16,569 adding 'galaxy/tools/parameters/wrapped_json.py' 2023-11-29T19:42:16,572 adding 'galaxy/tools/search/__init__.py' 2023-11-29T19:42:16,574 adding 'galaxy/tools/util/__init__.py' 2023-11-29T19:42:16,578 adding 'galaxy/tools/util/maf_utilities.py' 2023-11-29T19:42:16,581 adding 'galaxy/tools/util/galaxyops/__init__.py' 2023-11-29T19:42:16,583 adding 'galaxy/visualization/__init__.py' 2023-11-29T19:42:16,585 adding 'galaxy/visualization/genomes.py' 2023-11-29T19:42:16,587 adding 'galaxy/visualization/data_providers/__init__.py' 2023-11-29T19:42:16,589 adding 'galaxy/visualization/data_providers/basic.py' 2023-11-29T19:42:16,591 adding 'galaxy/visualization/data_providers/cigar.py' 2023-11-29T19:42:16,598 adding 'galaxy/visualization/data_providers/genome.py' 2023-11-29T19:42:16,600 adding 'galaxy/visualization/data_providers/registry.py' 2023-11-29T19:42:16,602 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2023-11-29T19:42:16,604 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2023-11-29T19:42:16,606 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2023-11-29T19:42:16,608 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2023-11-29T19:42:16,609 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2023-11-29T19:42:16,611 adding 'galaxy/visualization/genome/__init__.py' 2023-11-29T19:42:16,613 adding 'galaxy/visualization/plugins/__init__.py' 2023-11-29T19:42:16,616 adding 'galaxy/visualization/plugins/config_parser.py' 2023-11-29T19:42:16,619 adding 'galaxy/visualization/plugins/plugin.py' 2023-11-29T19:42:16,621 adding 'galaxy/visualization/plugins/registry.py' 2023-11-29T19:42:16,623 adding 'galaxy/visualization/plugins/resource_parser.py' 2023-11-29T19:42:16,625 adding 'galaxy/visualization/plugins/utils.py' 2023-11-29T19:42:16,627 adding 'galaxy/visualization/tracks/__init__.py' 2023-11-29T19:42:16,629 adding 'galaxy/webhooks/__init__.py' 2023-11-29T19:42:16,631 adding 'galaxy/work/__init__.py' 2023-11-29T19:42:16,632 adding 'galaxy/work/context.py' 2023-11-29T19:42:16,634 adding 'galaxy/workflow/__init__.py' 2023-11-29T19:42:16,637 adding 'galaxy/workflow/extract.py' 2023-11-29T19:42:16,651 adding 'galaxy/workflow/modules.py' 2023-11-29T19:42:16,653 adding 'galaxy/workflow/render.py' 2023-11-29T19:42:16,657 adding 'galaxy/workflow/run.py' 2023-11-29T19:42:16,661 adding 'galaxy/workflow/run_request.py' 2023-11-29T19:42:16,664 adding 'galaxy/workflow/scheduling_manager.py' 2023-11-29T19:42:16,665 adding 'galaxy/workflow/steps.py' 2023-11-29T19:42:16,667 adding 'galaxy/workflow/trs_proxy.py' 2023-11-29T19:42:16,669 adding 'galaxy/workflow/refactor/__init__.py' 2023-11-29T19:42:16,672 adding 'galaxy/workflow/refactor/execute.py' 2023-11-29T19:42:16,674 adding 'galaxy/workflow/refactor/schema.py' 2023-11-29T19:42:16,676 adding 'galaxy/workflow/reports/__init__.py' 2023-11-29T19:42:16,678 adding 'galaxy/workflow/reports/generators/__init__.py' 2023-11-29T19:42:16,679 adding 'galaxy/workflow/reports/generators/markdown.py' 2023-11-29T19:42:16,682 adding 'galaxy/workflow/resources/__init__.py' 2023-11-29T19:42:16,683 adding 'galaxy/workflow/resources/example.py.sample' 2023-11-29T19:42:16,685 adding 'galaxy/workflow/schedulers/__init__.py' 2023-11-29T19:42:16,686 adding 'galaxy/workflow/schedulers/core.py' 2023-11-29T19:42:16,689 adding 'galaxy_ext/__init__.py' 2023-11-29T19:42:16,690 adding 'galaxy_ext/py.typed' 2023-11-29T19:42:16,692 adding 'galaxy_ext/container_monitor/__init__.py' 2023-11-29T19:42:16,694 adding 'galaxy_ext/container_monitor/monitor.py' 2023-11-29T19:42:16,695 adding 'galaxy_ext/expressions/__init__.py' 2023-11-29T19:42:16,697 adding 'galaxy_ext/expressions/handle_job.py' 2023-11-29T19:42:16,698 adding 'galaxy_ext/metadata/__init__.py' 2023-11-29T19:42:16,700 adding 'galaxy_ext/metadata/set_metadata.py' 2023-11-29T19:42:16,702 adding 'tool_shed_client/__init__.py' 2023-11-29T19:42:16,704 adding 'tool_shed_client/schema/__init__.py' 2023-11-29T19:42:16,707 adding 'galaxy_app-23.1.2.dist-info/LICENSE' 2023-11-29T19:42:16,710 adding 'galaxy_app-23.1.2.dist-info/METADATA' 2023-11-29T19:42:16,711 adding 'galaxy_app-23.1.2.dist-info/WHEEL' 2023-11-29T19:42:16,713 adding 'galaxy_app-23.1.2.dist-info/entry_points.txt' 2023-11-29T19:42:16,714 adding 'galaxy_app-23.1.2.dist-info/top_level.txt' 2023-11-29T19:42:16,724 adding 'galaxy_app-23.1.2.dist-info/RECORD' 2023-11-29T19:42:16,754 removing build/bdist.linux-aarch64/wheel 2023-11-29T19:42:17,013 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2023-11-29T19:42:17,045 Created wheel for galaxy-app: filename=galaxy_app-23.1.2-py3-none-any.whl size=1396696 sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 2023-11-29T19:42:17,046 Stored in directory: /tmp/pip-ephem-wheel-cache-5ocg_mpw/wheels/9b/02/b6/fbb4027ea46e6372b8a890796bd4afbc1ef61b5f09513030e5 2023-11-29T19:42:17,080 Successfully built galaxy-app 2023-11-29T19:42:17,124 Removed build tracker: '/tmp/pip-build-tracker-h9f_98f6'