2023-11-30T23:11:09,756 Created temporary directory: /tmp/pip-build-tracker-zpom83_w 2023-11-30T23:11:09,757 Initialized build tracking at /tmp/pip-build-tracker-zpom83_w 2023-11-30T23:11:09,758 Created build tracker: /tmp/pip-build-tracker-zpom83_w 2023-11-30T23:11:09,758 Entered build tracker: /tmp/pip-build-tracker-zpom83_w 2023-11-30T23:11:09,759 Created temporary directory: /tmp/pip-wheel-ic4fgheb 2023-11-30T23:11:09,763 Created temporary directory: /tmp/pip-ephem-wheel-cache-9seocsaf 2023-11-30T23:11:09,786 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-11-30T23:11:09,790 2 location(s) to search for versions of nmdc-runtime: 2023-11-30T23:11:09,790 * https://pypi.org/simple/nmdc-runtime/ 2023-11-30T23:11:09,790 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-30T23:11:09,791 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-11-30T23:11:09,792 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-11-30T23:11:09,793 Found index url https://pypi.org/simple/ 2023-11-30T23:11:10,018 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-11-30T23:11:10,025 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,026 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-11-30T23:11:10,026 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,027 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-11-30T23:11:10,028 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,029 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-11-30T23:11:10,030 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,031 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,032 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-11-30T23:11:10,033 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,033 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,034 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-11-30T23:11:10,035 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,036 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-11-30T23:11:10,037 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,037 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-11-30T23:11:10,038 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,039 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-11-30T23:11:10,039 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,040 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-11-30T23:11:10,041 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,042 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-11-30T23:11:10,043 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,044 Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10 2023-11-30T23:11:10,044 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,045 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2023-11-30T23:11:10,046 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/13/bd/6dd46143615928b35bc35b6f246fff3cb4c55d35a8555d47f7cd7565a605/nmdc_runtime-1.0.12-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,047 Found link https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2023-11-30T23:11:10,048 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,049 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2023-11-30T23:11:10,049 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-30T23:11:10,050 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-30T23:11:10,051 Found index url https://www.piwheels.org/simple/ 2023-11-30T23:11:10,259 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-11-30T23:11:10,264 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,265 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,265 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,266 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,267 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,267 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,268 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,268 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,269 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-11-30T23:11:10,270 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,270 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,271 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,271 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-11-30T23:11:10,272 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-11-30T23:11:10,273 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-11-30T23:11:10,294 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-11-30T23:11:10,314 Collecting nmdc-runtime==1.0.13 2023-11-30T23:11:10,316 Created temporary directory: /tmp/pip-unpack-35063l_y 2023-11-30T23:11:10,534 Downloading nmdc_runtime-1.0.13.tar.gz (63.7 MB) 2023-11-30T23:11:29,253 Added nmdc-runtime==1.0.13 from https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz to build tracker '/tmp/pip-build-tracker-zpom83_w' 2023-11-30T23:11:29,256 Running setup.py (path:/tmp/pip-wheel-ic4fgheb/nmdc-runtime_9bf622a2cc474c81a350186f664c3138/setup.py) egg_info for package nmdc-runtime 2023-11-30T23:11:29,257 Created temporary directory: /tmp/pip-pip-egg-info-gccvk6as 2023-11-30T23:11:29,258 Preparing metadata (setup.py): started 2023-11-30T23:11:29,259 Running command python setup.py egg_info 2023-11-30T23:11:30,018 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-30T23:11:30,019 !! 2023-11-30T23:11:30,020 ******************************************************************************** 2023-11-30T23:11:30,021 Requirements should be satisfied by a PEP 517 installer. 2023-11-30T23:11:30,021 If you are using pip, you can try `pip install --use-pep517`. 2023-11-30T23:11:30,022 ******************************************************************************** 2023-11-30T23:11:30,023 !! 2023-11-30T23:11:30,024 dist.fetch_build_eggs(dist.setup_requires) 2023-11-30T23:11:33,196 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-30T23:11:33,304 running egg_info 2023-11-30T23:11:33,306 creating /tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info 2023-11-30T23:11:33,335 writing /tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/PKG-INFO 2023-11-30T23:11:33,339 writing dependency_links to /tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/dependency_links.txt 2023-11-30T23:11:33,341 writing entry points to /tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/entry_points.txt 2023-11-30T23:11:33,343 writing top-level names to /tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/top_level.txt 2023-11-30T23:11:33,344 writing manifest file '/tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-30T23:11:33,547 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-30T23:11:33,554 reading manifest file '/tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-30T23:11:33,556 adding license file 'LICENSE' 2023-11-30T23:11:33,560 writing manifest file '/tmp/pip-pip-egg-info-gccvk6as/nmdc_runtime.egg-info/SOURCES.txt' 2023-11-30T23:11:33,677 Preparing metadata (setup.py): finished with status 'done' 2023-11-30T23:11:33,681 Source in /tmp/pip-wheel-ic4fgheb/nmdc-runtime_9bf622a2cc474c81a350186f664c3138 has version 1.0.13, which satisfies requirement nmdc-runtime==1.0.13 from https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz 2023-11-30T23:11:33,682 Removed nmdc-runtime==1.0.13 from https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz from build tracker '/tmp/pip-build-tracker-zpom83_w' 2023-11-30T23:11:33,688 Created temporary directory: /tmp/pip-unpack-nixappjc 2023-11-30T23:11:33,689 Created temporary directory: /tmp/pip-unpack-szqppgmb 2023-11-30T23:11:33,693 Building wheels for collected packages: nmdc-runtime 2023-11-30T23:11:33,697 Created temporary directory: /tmp/pip-wheel-r3a6fn4n 2023-11-30T23:11:33,698 Building wheel for nmdc-runtime (setup.py): started 2023-11-30T23:11:33,699 Destination directory: /tmp/pip-wheel-r3a6fn4n 2023-11-30T23:11:33,700 Running command python setup.py bdist_wheel 2023-11-30T23:11:34,462 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-11-30T23:11:34,462 !! 2023-11-30T23:11:34,463 ******************************************************************************** 2023-11-30T23:11:34,464 Requirements should be satisfied by a PEP 517 installer. 2023-11-30T23:11:34,465 If you are using pip, you can try `pip install --use-pep517`. 2023-11-30T23:11:34,466 ******************************************************************************** 2023-11-30T23:11:34,467 !! 2023-11-30T23:11:34,467 dist.fetch_build_eggs(dist.setup_requires) 2023-11-30T23:11:35,030 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-11-30T23:11:35,135 running bdist_wheel 2023-11-30T23:11:35,248 running build 2023-11-30T23:11:35,249 running build_py 2023-11-30T23:11:35,280 creating build 2023-11-30T23:11:35,281 creating build/lib 2023-11-30T23:11:35,282 creating build/lib/nmdc_runtime 2023-11-30T23:11:35,283 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-11-30T23:11:35,286 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-11-30T23:11:35,288 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-11-30T23:11:35,290 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-11-30T23:11:35,292 creating build/lib/nmdc_runtime/domain 2023-11-30T23:11:35,293 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-11-30T23:11:35,295 creating build/lib/nmdc_runtime/client 2023-11-30T23:11:35,296 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-11-30T23:11:35,299 creating build/lib/nmdc_runtime/minter 2023-11-30T23:11:35,300 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-11-30T23:11:35,302 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-11-30T23:11:35,304 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-11-30T23:11:35,306 creating build/lib/nmdc_runtime/site 2023-11-30T23:11:35,307 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,310 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,313 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,315 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,318 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,320 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-11-30T23:11:35,322 creating build/lib/nmdc_runtime/infrastructure 2023-11-30T23:11:35,323 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-11-30T23:11:35,325 creating build/lib/nmdc_runtime/core 2023-11-30T23:11:35,326 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-11-30T23:11:35,329 creating build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,329 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,332 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,334 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,337 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,338 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,341 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-11-30T23:11:35,344 creating build/lib/nmdc_runtime/domain/users 2023-11-30T23:11:35,345 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-11-30T23:11:35,347 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-11-30T23:11:35,348 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-11-30T23:11:35,350 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-11-30T23:11:35,352 creating build/lib/nmdc_runtime/minter/domain 2023-11-30T23:11:35,353 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-11-30T23:11:35,356 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-11-30T23:11:35,358 creating build/lib/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,359 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,361 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,363 creating build/lib/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,364 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,366 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,369 creating build/lib/nmdc_runtime/site/backup 2023-11-30T23:11:35,370 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-11-30T23:11:35,372 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-11-30T23:11:35,374 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-11-30T23:11:35,376 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-11-30T23:11:35,378 creating build/lib/nmdc_runtime/site/normalization 2023-11-30T23:11:35,379 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-11-30T23:11:35,381 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-11-30T23:11:35,384 creating build/lib/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,385 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,387 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,390 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,393 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,395 creating build/lib/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,396 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,398 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,400 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,402 creating build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,403 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,405 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,407 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,409 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,411 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-11-30T23:11:35,413 creating build/lib/nmdc_runtime/site/export 2023-11-30T23:11:35,414 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-11-30T23:11:35,416 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-11-30T23:11:35,418 creating build/lib/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,419 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,421 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,423 creating build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,424 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,426 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,429 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,431 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,434 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,436 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,438 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,441 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,443 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-11-30T23:11:35,445 creating build/lib/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,446 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,448 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,450 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,451 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,453 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,456 creating build/lib/nmdc_runtime/core/db 2023-11-30T23:11:35,457 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-11-30T23:11:35,459 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-11-30T23:11:35,461 creating build/lib/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,463 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,465 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,466 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,517 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-11-30T23:11:35,518 !! 2023-11-30T23:11:35,519 ******************************************************************************** 2023-11-30T23:11:35,520 Please avoid running ``setup.py`` directly. 2023-11-30T23:11:35,520 Instead, use pypa/build, pypa/installer or other 2023-11-30T23:11:35,521 standards-based tools. 2023-11-30T23:11:35,522 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-11-30T23:11:35,523 ******************************************************************************** 2023-11-30T23:11:35,524 !! 2023-11-30T23:11:35,525 self.initialize_options() 2023-11-30T23:11:35,547 installing to build/bdist.linux-aarch64/wheel 2023-11-30T23:11:35,548 running install 2023-11-30T23:11:35,572 running install_lib 2023-11-30T23:11:35,602 creating build/bdist.linux-aarch64 2023-11-30T23:11:35,602 creating build/bdist.linux-aarch64/wheel 2023-11-30T23:11:35,604 creating build/bdist.linux-aarch64/wheel/nmdc_runtime 2023-11-30T23:11:35,605 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime 2023-11-30T23:11:35,609 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/domain 2023-11-30T23:11:35,610 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/domain/users 2023-11-30T23:11:35,612 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/domain/users 2023-11-30T23:11:35,614 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/domain/users 2023-11-30T23:11:35,616 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/domain/users 2023-11-30T23:11:35,618 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/domain/users 2023-11-30T23:11:35,620 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/domain 2023-11-30T23:11:35,622 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/client 2023-11-30T23:11:35,623 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/client 2023-11-30T23:11:35,625 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/minter 2023-11-30T23:11:35,626 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter 2023-11-30T23:11:35,629 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/domain 2023-11-30T23:11:35,630 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/domain 2023-11-30T23:11:35,632 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/domain 2023-11-30T23:11:35,634 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,635 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,638 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/adapters 2023-11-30T23:11:35,640 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,641 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,644 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter/entrypoints 2023-11-30T23:11:35,645 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter 2023-11-30T23:11:35,647 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/minter 2023-11-30T23:11:35,649 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,651 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/backup 2023-11-30T23:11:35,652 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/backup 2023-11-30T23:11:35,654 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/backup 2023-11-30T23:11:35,656 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/backup 2023-11-30T23:11:35,659 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/backup 2023-11-30T23:11:35,660 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,662 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/normalization 2023-11-30T23:11:35,663 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/normalization 2023-11-30T23:11:35,665 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/normalization 2023-11-30T23:11:35,668 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,669 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,671 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,674 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,677 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/terminusdb 2023-11-30T23:11:35,678 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,682 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,683 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,685 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,687 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/drsobjects 2023-11-30T23:11:35,689 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,690 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,692 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,694 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,697 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,699 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/validation 2023-11-30T23:11:35,701 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,704 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/export 2023-11-30T23:11:35,705 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/export 2023-11-30T23:11:35,707 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/export 2023-11-30T23:11:35,709 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,712 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,713 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,715 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/changesheets 2023-11-30T23:11:35,718 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,718 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,721 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,723 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,726 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,729 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,731 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,733 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,736 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,738 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site/translation 2023-11-30T23:11:35,740 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,743 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/site 2023-11-30T23:11:35,745 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime 2023-11-30T23:11:35,747 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure 2023-11-30T23:11:35,748 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,749 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,752 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,753 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,756 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database/models 2023-11-30T23:11:35,758 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure/database 2023-11-30T23:11:35,760 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/infrastructure 2023-11-30T23:11:35,762 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime 2023-11-30T23:11:35,764 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/core 2023-11-30T23:11:35,766 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/core/db 2023-11-30T23:11:35,768 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core/db 2023-11-30T23:11:35,770 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core/db 2023-11-30T23:11:35,773 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,773 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,776 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,777 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core/exceptions 2023-11-30T23:11:35,780 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/core 2023-11-30T23:11:35,781 creating build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,782 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,785 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,788 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,790 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,792 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,795 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime/lib 2023-11-30T23:11:35,797 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-aarch64/wheel/nmdc_runtime 2023-11-30T23:11:35,799 running install_egg_info 2023-11-30T23:11:35,856 running egg_info 2023-11-30T23:11:35,885 writing nmdc_runtime.egg-info/PKG-INFO 2023-11-30T23:11:35,889 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-11-30T23:11:35,890 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-11-30T23:11:35,892 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-11-30T23:11:36,006 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-11-30T23:11:36,010 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-30T23:11:36,076 adding license file 'LICENSE' 2023-11-30T23:11:36,093 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-11-30T23:11:36,096 Copying nmdc_runtime.egg-info to build/bdist.linux-aarch64/wheel/nmdc_runtime-1.0.13-py3.11.egg-info 2023-11-30T23:11:36,108 running install_scripts 2023-11-30T23:11:36,123 creating build/bdist.linux-aarch64/wheel/nmdc_runtime-1.0.13.dist-info/WHEEL 2023-11-30T23:11:36,126 creating '/tmp/pip-wheel-r3a6fn4n/nmdc_runtime-1.0.13-py3-none-any.whl' and adding 'build/bdist.linux-aarch64/wheel' to it 2023-11-30T23:11:36,129 adding 'nmdc_runtime/__init__.py' 2023-11-30T23:11:36,131 adding 'nmdc_runtime/containers.py' 2023-11-30T23:11:36,136 adding 'nmdc_runtime/main.py' 2023-11-30T23:11:36,139 adding 'nmdc_runtime/util.py' 2023-11-30T23:11:36,141 adding 'nmdc_runtime/client/__init__.py' 2023-11-30T23:11:36,143 adding 'nmdc_runtime/core/__init__.py' 2023-11-30T23:11:36,145 adding 'nmdc_runtime/core/db/Database.py' 2023-11-30T23:11:36,147 adding 'nmdc_runtime/core/db/__init__.py' 2023-11-30T23:11:36,149 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-11-30T23:11:36,150 adding 'nmdc_runtime/core/exceptions/base.py' 2023-11-30T23:11:36,151 adding 'nmdc_runtime/core/exceptions/token.py' 2023-11-30T23:11:36,153 adding 'nmdc_runtime/domain/__init__.py' 2023-11-30T23:11:36,155 adding 'nmdc_runtime/domain/users/__init__.py' 2023-11-30T23:11:36,157 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-11-30T23:11:36,158 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-11-30T23:11:36,159 adding 'nmdc_runtime/domain/users/userService.py' 2023-11-30T23:11:36,161 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-11-30T23:11:36,163 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-11-30T23:11:36,164 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-11-30T23:11:36,166 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-11-30T23:11:36,167 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-11-30T23:11:36,169 adding 'nmdc_runtime/lib/__init__.py' 2023-11-30T23:11:36,170 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-11-30T23:11:36,171 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-11-30T23:11:36,175 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-11-30T23:11:36,177 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-11-30T23:11:36,183 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-11-30T23:11:36,185 adding 'nmdc_runtime/minter/__init__.py' 2023-11-30T23:11:36,186 adding 'nmdc_runtime/minter/bootstrap.py' 2023-11-30T23:11:36,188 adding 'nmdc_runtime/minter/config.py' 2023-11-30T23:11:36,189 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-11-30T23:11:36,192 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-11-30T23:11:36,193 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-11-30T23:11:36,195 adding 'nmdc_runtime/minter/domain/model.py' 2023-11-30T23:11:36,196 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-11-30T23:11:36,198 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-11-30T23:11:36,200 adding 'nmdc_runtime/site/__init__.py' 2023-11-30T23:11:36,202 adding 'nmdc_runtime/site/graphs.py' 2023-11-30T23:11:36,205 adding 'nmdc_runtime/site/ops.py' 2023-11-30T23:11:36,208 adding 'nmdc_runtime/site/repository.py' 2023-11-30T23:11:36,211 adding 'nmdc_runtime/site/resources.py' 2023-11-30T23:11:36,212 adding 'nmdc_runtime/site/util.py' 2023-11-30T23:11:36,214 adding 'nmdc_runtime/site/backup/__init__.py' 2023-11-30T23:11:36,216 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-11-30T23:11:36,218 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-11-30T23:11:36,219 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-11-30T23:11:36,221 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-11-30T23:11:36,223 adding 'nmdc_runtime/site/changesheets/base.py' 2023-11-30T23:11:36,225 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-11-30T23:11:36,227 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-11-30T23:11:36,228 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-11-30T23:11:36,230 adding 'nmdc_runtime/site/export/__init__.py' 2023-11-30T23:11:36,232 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-11-30T23:11:36,234 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-11-30T23:11:36,235 adding 'nmdc_runtime/site/normalization/gold.py' 2023-11-30T23:11:36,237 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-11-30T23:11:36,239 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-11-30T23:11:36,240 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-11-30T23:11:36,248 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-11-30T23:11:36,250 adding 'nmdc_runtime/site/translation/__init__.py' 2023-11-30T23:11:36,252 adding 'nmdc_runtime/site/translation/emsl.py' 2023-11-30T23:11:36,253 adding 'nmdc_runtime/site/translation/gold.py' 2023-11-30T23:11:36,256 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-11-30T23:11:36,258 adding 'nmdc_runtime/site/translation/jgi.py' 2023-11-30T23:11:36,262 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-11-30T23:11:36,265 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-11-30T23:11:36,267 adding 'nmdc_runtime/site/translation/translator.py' 2023-11-30T23:11:36,269 adding 'nmdc_runtime/site/translation/util.py' 2023-11-30T23:11:36,270 adding 'nmdc_runtime/site/validation/__init__.py' 2023-11-30T23:11:36,272 adding 'nmdc_runtime/site/validation/emsl.py' 2023-11-30T23:11:36,273 adding 'nmdc_runtime/site/validation/gold.py' 2023-11-30T23:11:36,274 adding 'nmdc_runtime/site/validation/jgi.py' 2023-11-30T23:11:36,276 adding 'nmdc_runtime/site/validation/util.py' 2023-11-30T23:11:36,278 adding 'nmdc_runtime-1.0.13.dist-info/LICENSE' 2023-11-30T23:11:36,280 adding 'nmdc_runtime-1.0.13.dist-info/METADATA' 2023-11-30T23:11:36,281 adding 'nmdc_runtime-1.0.13.dist-info/WHEEL' 2023-11-30T23:11:36,282 adding 'nmdc_runtime-1.0.13.dist-info/entry_points.txt' 2023-11-30T23:11:36,283 adding 'nmdc_runtime-1.0.13.dist-info/top_level.txt' 2023-11-30T23:11:36,285 adding 'nmdc_runtime-1.0.13.dist-info/RECORD' 2023-11-30T23:11:36,289 removing build/bdist.linux-aarch64/wheel 2023-11-30T23:11:36,435 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-11-30T23:11:36,439 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.13-py3-none-any.whl size=121453 sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a 2023-11-30T23:11:36,440 Stored in directory: /tmp/pip-ephem-wheel-cache-9seocsaf/wheels/a1/ee/c4/fce46fc5bba4b684cf1e80b489411dfaa48b674b9bce6ec959 2023-11-30T23:11:36,454 Successfully built nmdc-runtime 2023-11-30T23:11:36,461 Removed build tracker: '/tmp/pip-build-tracker-zpom83_w'