2023-12-03T04:14:56,101 Created temporary directory: /tmp/pip-build-tracker-j1dvaota
2023-12-03T04:14:56,102 Initialized build tracking at /tmp/pip-build-tracker-j1dvaota
2023-12-03T04:14:56,102 Created build tracker: /tmp/pip-build-tracker-j1dvaota
2023-12-03T04:14:56,103 Entered build tracker: /tmp/pip-build-tracker-j1dvaota
2023-12-03T04:14:56,104 Created temporary directory: /tmp/pip-wheel-kjt9lvty
2023-12-03T04:14:56,107 Created temporary directory: /tmp/pip-ephem-wheel-cache-bfh173o7
2023-12-03T04:14:56,128 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-03T04:14:56,132 2 location(s) to search for versions of wgs-analysis:
2023-12-03T04:14:56,132 * https://pypi.org/simple/wgs-analysis/
2023-12-03T04:14:56,132 * https://www.piwheels.org/simple/wgs-analysis/
2023-12-03T04:14:56,133 Fetching project page and analyzing links: https://pypi.org/simple/wgs-analysis/
2023-12-03T04:14:56,133 Getting page https://pypi.org/simple/wgs-analysis/
2023-12-03T04:14:56,135 Found index url https://pypi.org/simple/
2023-12-03T04:14:56,344 Fetched page https://pypi.org/simple/wgs-analysis/ as application/vnd.pypi.simple.v1+json
2023-12-03T04:14:56,346   Found link https://files.pythonhosted.org/packages/ea/41/e71b578f8e83982d7807eb45a68c072a55c919b9800542fdff88ee5e5b29/wgs_analysis-0.0.3.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.3
2023-12-03T04:14:56,346   Found link https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.4
2023-12-03T04:14:56,347   Found link https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.5
2023-12-03T04:14:56,348 Fetching project page and analyzing links: https://www.piwheels.org/simple/wgs-analysis/
2023-12-03T04:14:56,348 Getting page https://www.piwheels.org/simple/wgs-analysis/
2023-12-03T04:14:56,350 Found index url https://www.piwheels.org/simple/
2023-12-03T04:14:56,507 Fetched page https://www.piwheels.org/simple/wgs-analysis/ as text/html
2023-12-03T04:14:56,508   Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.3-py3-none-any.whl#sha256=4ac67e1f4ba54135dfcbae668b4d17436fd92a2dd41627f0067d65bffa11f06e (from https://www.piwheels.org/simple/wgs-analysis/)
2023-12-03T04:14:56,509 Skipping link: not a file: https://www.piwheels.org/simple/wgs-analysis/
2023-12-03T04:14:56,510 Skipping link: not a file: https://pypi.org/simple/wgs-analysis/
2023-12-03T04:14:56,528 Given no hashes to check 1 links for project 'wgs-analysis': discarding no candidates
2023-12-03T04:14:56,546 Collecting wgs-analysis==0.0.4
2023-12-03T04:14:56,548   Created temporary directory: /tmp/pip-unpack-d_6ce6_m
2023-12-03T04:14:56,830   Downloading wgs_analysis-0.0.4.tar.gz (85 kB)
2023-12-03T04:14:56,993   Added wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-j1dvaota'
2023-12-03T04:14:56,996   Running setup.py (path:/tmp/pip-wheel-kjt9lvty/wgs-analysis_f8fd125b04b74befa01e935e93b49dbc/setup.py) egg_info for package wgs-analysis
2023-12-03T04:14:56,996   Created temporary directory: /tmp/pip-pip-egg-info-khpr1g9o
2023-12-03T04:14:56,997   Preparing metadata (setup.py): started
2023-12-03T04:14:56,998   Running command python setup.py egg_info
2023-12-03T04:14:58,115   running egg_info
2023-12-03T04:14:58,117   creating /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info
2023-12-03T04:14:58,141   writing /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/PKG-INFO
2023-12-03T04:14:58,143   writing dependency_links to /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/dependency_links.txt
2023-12-03T04:14:58,146   writing top-level names to /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/top_level.txt
2023-12-03T04:14:58,147   writing manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt'
2023-12-03T04:14:58,207   reading manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt'
2023-12-03T04:14:58,209   reading manifest template 'MANIFEST.in'
2023-12-03T04:14:58,212   writing manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt'
2023-12-03T04:14:58,317   Preparing metadata (setup.py): finished with status 'done'
2023-12-03T04:14:58,321   Source in /tmp/pip-wheel-kjt9lvty/wgs-analysis_f8fd125b04b74befa01e935e93b49dbc has version 0.0.4, which satisfies requirement wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz
2023-12-03T04:14:58,322   Removed wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-j1dvaota'
2023-12-03T04:14:58,326 Created temporary directory: /tmp/pip-unpack-jlobt1dp
2023-12-03T04:14:58,327 Created temporary directory: /tmp/pip-unpack-acbi_tsd
2023-12-03T04:14:58,330 Building wheels for collected packages: wgs-analysis
2023-12-03T04:14:58,339   Created temporary directory: /tmp/pip-wheel-_czqjmf1
2023-12-03T04:14:58,339   Building wheel for wgs-analysis (setup.py): started
2023-12-03T04:14:58,341   Destination directory: /tmp/pip-wheel-_czqjmf1
2023-12-03T04:14:58,342   Running command python setup.py bdist_wheel
2023-12-03T04:14:59,436   running bdist_wheel
2023-12-03T04:14:59,513   running build
2023-12-03T04:14:59,514   running build_py
2023-12-03T04:14:59,521   creating build
2023-12-03T04:14:59,522   creating build/lib
2023-12-03T04:14:59,524   creating build/lib/wgs_analysis
2023-12-03T04:14:59,528   copying wgs_analysis/__init__.py -> build/lib/wgs_analysis
2023-12-03T04:14:59,535   copying wgs_analysis/_version.py -> build/lib/wgs_analysis
2023-12-03T04:14:59,540   copying wgs_analysis/refgenome.py -> build/lib/wgs_analysis
2023-12-03T04:14:59,549   creating build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,552   copying wgs_analysis/algorithms/rearrangement.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,561   copying wgs_analysis/algorithms/tree.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,571   copying wgs_analysis/algorithms/cnv.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,582   copying wgs_analysis/algorithms/__init__.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,591   copying wgs_analysis/algorithms/position.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,601   copying wgs_analysis/algorithms/merge.py -> build/lib/wgs_analysis/algorithms
2023-12-03T04:14:59,618   creating build/lib/wgs_analysis/tables
2023-12-03T04:14:59,624   copying wgs_analysis/tables/gene_matrix.py -> build/lib/wgs_analysis/tables
2023-12-03T04:14:59,642   copying wgs_analysis/tables/clones.py -> build/lib/wgs_analysis/tables
2023-12-03T04:14:59,653   copying wgs_analysis/tables/io.py -> build/lib/wgs_analysis/tables
2023-12-03T04:14:59,662   copying wgs_analysis/tables/__init__.py -> build/lib/wgs_analysis/tables
2023-12-03T04:14:59,669   copying wgs_analysis/tables/trees.py -> build/lib/wgs_analysis/tables
2023-12-03T04:14:59,886   creating build/lib/wgs_analysis/utils
2023-12-03T04:14:59,887   copying wgs_analysis/utils/__init__.py -> build/lib/wgs_analysis/utils
2023-12-03T04:14:59,889   copying wgs_analysis/utils/trees.py -> build/lib/wgs_analysis/utils
2023-12-03T04:14:59,891   creating build/lib/wgs_analysis/plots
2023-12-03T04:14:59,892   copying wgs_analysis/plots/circos.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,894   copying wgs_analysis/plots/clones.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,896   copying wgs_analysis/plots/rearrangement.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,898   copying wgs_analysis/plots/singlecell.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,900   copying wgs_analysis/plots/cnv.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,903   copying wgs_analysis/plots/general.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,904   copying wgs_analysis/plots/positions.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,906   copying wgs_analysis/plots/__init__.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,907   copying wgs_analysis/plots/snv.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,909   copying wgs_analysis/plots/trees.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,911   copying wgs_analysis/plots/heatmap.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,913   copying wgs_analysis/plots/utils.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,914   copying wgs_analysis/plots/colors.py -> build/lib/wgs_analysis/plots
2023-12-03T04:14:59,916   creating build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,917   copying wgs_analysis/annotation/rearrangement.py -> build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,919   copying wgs_analysis/annotation/cnv.py -> build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,921   copying wgs_analysis/annotation/__init__.py -> build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,922   copying wgs_analysis/annotation/snv.py -> build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,924   copying wgs_analysis/annotation/position.py -> build/lib/wgs_analysis/annotation
2023-12-03T04:14:59,926   creating build/lib/wgs_analysis/tests
2023-12-03T04:14:59,927   copying wgs_analysis/tests/test_breakpoint_db.py -> build/lib/wgs_analysis/tests
2023-12-03T04:14:59,928   copying wgs_analysis/tests/__init__.py -> build/lib/wgs_analysis/tests
2023-12-03T04:14:59,930   creating build/lib/wgs_analysis/snvs
2023-12-03T04:14:59,931   copying wgs_analysis/snvs/mutsig.py -> build/lib/wgs_analysis/snvs
2023-12-03T04:14:59,933   copying wgs_analysis/snvs/__init__.py -> build/lib/wgs_analysis/snvs
2023-12-03T04:14:59,935   creating build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,936   copying wgs_analysis/experiments/design_primers.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,938   copying wgs_analysis/experiments/design_snv_primers.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,940   copying wgs_analysis/experiments/design_experiment.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,942   copying wgs_analysis/experiments/design_break_primers.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,944   copying wgs_analysis/experiments/design_utils.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,946   copying wgs_analysis/experiments/blat_server.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,948   copying wgs_analysis/experiments/__init__.py -> build/lib/wgs_analysis/experiments
2023-12-03T04:14:59,953   creating build/lib/wgs_analysis/data
2023-12-03T04:14:59,954   copying wgs_analysis/data/GRCh37-lite.fa.fai -> build/lib/wgs_analysis/data
2023-12-03T04:14:59,957   copying wgs_analysis/data/signatures_probabilities.tsv -> build/lib/wgs_analysis/data
2023-12-03T04:14:59,963   UPDATING build/lib/wgs_analysis/_version.py
2023-12-03T04:14:59,964   set build/lib/wgs_analysis/_version.py to '0.0.4'
2023-12-03T04:14:59,989   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-03T04:14:59,989   !!

2023-12-03T04:14:59,990           ********************************************************************************
2023-12-03T04:14:59,991           Please avoid running ``setup.py`` directly.
2023-12-03T04:14:59,991           Instead, use pypa/build, pypa/installer or other
2023-12-03T04:14:59,992           standards-based tools.

2023-12-03T04:14:59,993           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-03T04:14:59,994           ********************************************************************************

2023-12-03T04:14:59,995   !!
2023-12-03T04:14:59,995     self.initialize_options()
2023-12-03T04:15:00,013   installing to build/bdist.linux-armv7l/wheel
2023-12-03T04:15:00,014   running install
2023-12-03T04:15:00,038   running install_lib
2023-12-03T04:15:00,061   creating build/bdist.linux-armv7l
2023-12-03T04:15:00,062   creating build/bdist.linux-armv7l/wheel
2023-12-03T04:15:00,063   creating build/bdist.linux-armv7l/wheel/wgs_analysis
2023-12-03T04:15:00,065   creating build/bdist.linux-armv7l/wheel/wgs_analysis/data
2023-12-03T04:15:00,065   copying build/lib/wgs_analysis/data/GRCh37-lite.fa.fai -> build/bdist.linux-armv7l/wheel/wgs_analysis/data
2023-12-03T04:15:00,067   copying build/lib/wgs_analysis/data/signatures_probabilities.tsv -> build/bdist.linux-armv7l/wheel/wgs_analysis/data
2023-12-03T04:15:00,071   creating build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,071   copying build/lib/wgs_analysis/algorithms/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,073   copying build/lib/wgs_analysis/algorithms/tree.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,075   copying build/lib/wgs_analysis/algorithms/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,077   copying build/lib/wgs_analysis/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,079   copying build/lib/wgs_analysis/algorithms/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,080   copying build/lib/wgs_analysis/algorithms/merge.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms
2023-12-03T04:15:00,083   creating build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,084   copying build/lib/wgs_analysis/tables/gene_matrix.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,086   copying build/lib/wgs_analysis/tables/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,089   copying build/lib/wgs_analysis/tables/io.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,091   copying build/lib/wgs_analysis/tables/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,093   copying build/lib/wgs_analysis/tables/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables
2023-12-03T04:15:00,096   creating build/bdist.linux-armv7l/wheel/wgs_analysis/utils
2023-12-03T04:15:00,097   copying build/lib/wgs_analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils
2023-12-03T04:15:00,098   copying build/lib/wgs_analysis/utils/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils
2023-12-03T04:15:00,101   creating build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,101   copying build/lib/wgs_analysis/plots/circos.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,104   copying build/lib/wgs_analysis/plots/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,105   copying build/lib/wgs_analysis/plots/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,108   copying build/lib/wgs_analysis/plots/singlecell.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,110   copying build/lib/wgs_analysis/plots/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,112   copying build/lib/wgs_analysis/plots/general.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,114   copying build/lib/wgs_analysis/plots/positions.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,116   copying build/lib/wgs_analysis/plots/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,117   copying build/lib/wgs_analysis/plots/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,119   copying build/lib/wgs_analysis/plots/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,121   copying build/lib/wgs_analysis/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,123   copying build/lib/wgs_analysis/plots/utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,125   copying build/lib/wgs_analysis/plots/colors.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots
2023-12-03T04:15:00,127   creating build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,128   copying build/lib/wgs_analysis/annotation/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,130   copying build/lib/wgs_analysis/annotation/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,132   copying build/lib/wgs_analysis/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,133   copying build/lib/wgs_analysis/annotation/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,135   copying build/lib/wgs_analysis/annotation/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation
2023-12-03T04:15:00,136   copying build/lib/wgs_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis
2023-12-03T04:15:00,138   creating build/bdist.linux-armv7l/wheel/wgs_analysis/tests
2023-12-03T04:15:00,139   copying build/lib/wgs_analysis/tests/test_breakpoint_db.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests
2023-12-03T04:15:00,141   copying build/lib/wgs_analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests
2023-12-03T04:15:00,142   creating build/bdist.linux-armv7l/wheel/wgs_analysis/snvs
2023-12-03T04:15:00,143   copying build/lib/wgs_analysis/snvs/mutsig.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs
2023-12-03T04:15:00,146   copying build/lib/wgs_analysis/snvs/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs
2023-12-03T04:15:00,147   creating build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,148   copying build/lib/wgs_analysis/experiments/design_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,150   copying build/lib/wgs_analysis/experiments/design_snv_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,152   copying build/lib/wgs_analysis/experiments/design_experiment.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,155   copying build/lib/wgs_analysis/experiments/design_break_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,157   copying build/lib/wgs_analysis/experiments/design_utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,159   copying build/lib/wgs_analysis/experiments/blat_server.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,160   copying build/lib/wgs_analysis/experiments/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments
2023-12-03T04:15:00,162   copying build/lib/wgs_analysis/_version.py -> build/bdist.linux-armv7l/wheel/wgs_analysis
2023-12-03T04:15:00,163   copying build/lib/wgs_analysis/refgenome.py -> build/bdist.linux-armv7l/wheel/wgs_analysis
2023-12-03T04:15:00,165   running install_egg_info
2023-12-03T04:15:00,228   running egg_info
2023-12-03T04:15:00,264   writing wgs_analysis.egg-info/PKG-INFO
2023-12-03T04:15:00,268   writing dependency_links to wgs_analysis.egg-info/dependency_links.txt
2023-12-03T04:15:00,270   writing top-level names to wgs_analysis.egg-info/top_level.txt
2023-12-03T04:15:00,319   reading manifest file 'wgs_analysis.egg-info/SOURCES.txt'
2023-12-03T04:15:00,322   reading manifest template 'MANIFEST.in'
2023-12-03T04:15:00,326   writing manifest file 'wgs_analysis.egg-info/SOURCES.txt'
2023-12-03T04:15:00,327   Copying wgs_analysis.egg-info to build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.4-py3.11.egg-info
2023-12-03T04:15:00,334   running install_scripts
2023-12-03T04:15:00,343   creating build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.4.dist-info/WHEEL
2023-12-03T04:15:00,346   creating '/tmp/pip-wheel-_czqjmf1/wgs_analysis-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-03T04:15:00,348   adding 'wgs_analysis/__init__.py'
2023-12-03T04:15:00,349   adding 'wgs_analysis/_version.py'
2023-12-03T04:15:00,350   adding 'wgs_analysis/refgenome.py'
2023-12-03T04:15:00,352   adding 'wgs_analysis/algorithms/__init__.py'
2023-12-03T04:15:00,353   adding 'wgs_analysis/algorithms/cnv.py'
2023-12-03T04:15:00,354   adding 'wgs_analysis/algorithms/merge.py'
2023-12-03T04:15:00,356   adding 'wgs_analysis/algorithms/position.py'
2023-12-03T04:15:00,357   adding 'wgs_analysis/algorithms/rearrangement.py'
2023-12-03T04:15:00,358   adding 'wgs_analysis/algorithms/tree.py'
2023-12-03T04:15:00,360   adding 'wgs_analysis/annotation/__init__.py'
2023-12-03T04:15:00,361   adding 'wgs_analysis/annotation/cnv.py'
2023-12-03T04:15:00,363   adding 'wgs_analysis/annotation/position.py'
2023-12-03T04:15:00,364   adding 'wgs_analysis/annotation/rearrangement.py'
2023-12-03T04:15:00,365   adding 'wgs_analysis/annotation/snv.py'
2023-12-03T04:15:00,367   adding 'wgs_analysis/data/GRCh37-lite.fa.fai'
2023-12-03T04:15:00,374   adding 'wgs_analysis/data/signatures_probabilities.tsv'
2023-12-03T04:15:00,376   adding 'wgs_analysis/experiments/__init__.py'
2023-12-03T04:15:00,378   adding 'wgs_analysis/experiments/blat_server.py'
2023-12-03T04:15:00,379   adding 'wgs_analysis/experiments/design_break_primers.py'
2023-12-03T04:15:00,381   adding 'wgs_analysis/experiments/design_experiment.py'
2023-12-03T04:15:00,383   adding 'wgs_analysis/experiments/design_primers.py'
2023-12-03T04:15:00,384   adding 'wgs_analysis/experiments/design_snv_primers.py'
2023-12-03T04:15:00,386   adding 'wgs_analysis/experiments/design_utils.py'
2023-12-03T04:15:00,387   adding 'wgs_analysis/plots/__init__.py'
2023-12-03T04:15:00,389   adding 'wgs_analysis/plots/circos.py'
2023-12-03T04:15:00,390   adding 'wgs_analysis/plots/clones.py'
2023-12-03T04:15:00,393   adding 'wgs_analysis/plots/cnv.py'
2023-12-03T04:15:00,395   adding 'wgs_analysis/plots/colors.py'
2023-12-03T04:15:00,396   adding 'wgs_analysis/plots/general.py'
2023-12-03T04:15:00,397   adding 'wgs_analysis/plots/heatmap.py'
2023-12-03T04:15:00,398   adding 'wgs_analysis/plots/positions.py'
2023-12-03T04:15:00,400   adding 'wgs_analysis/plots/rearrangement.py'
2023-12-03T04:15:00,402   adding 'wgs_analysis/plots/singlecell.py'
2023-12-03T04:15:00,404   adding 'wgs_analysis/plots/snv.py'
2023-12-03T04:15:00,405   adding 'wgs_analysis/plots/trees.py'
2023-12-03T04:15:00,407   adding 'wgs_analysis/plots/utils.py'
2023-12-03T04:15:00,409   adding 'wgs_analysis/snvs/__init__.py'
2023-12-03T04:15:00,410   adding 'wgs_analysis/snvs/mutsig.py'
2023-12-03T04:15:00,412   adding 'wgs_analysis/tables/__init__.py'
2023-12-03T04:15:00,414   adding 'wgs_analysis/tables/clones.py'
2023-12-03T04:15:00,416   adding 'wgs_analysis/tables/gene_matrix.py'
2023-12-03T04:15:00,417   adding 'wgs_analysis/tables/io.py'
2023-12-03T04:15:00,419   adding 'wgs_analysis/tables/trees.py'
2023-12-03T04:15:00,421   adding 'wgs_analysis/tests/__init__.py'
2023-12-03T04:15:00,422   adding 'wgs_analysis/tests/test_breakpoint_db.py'
2023-12-03T04:15:00,423   adding 'wgs_analysis/utils/__init__.py'
2023-12-03T04:15:00,425   adding 'wgs_analysis/utils/trees.py'
2023-12-03T04:15:00,426   adding 'wgs_analysis-0.0.4.dist-info/METADATA'
2023-12-03T04:15:00,427   adding 'wgs_analysis-0.0.4.dist-info/WHEEL'
2023-12-03T04:15:00,428   adding 'wgs_analysis-0.0.4.dist-info/top_level.txt'
2023-12-03T04:15:00,429   adding 'wgs_analysis-0.0.4.dist-info/RECORD'
2023-12-03T04:15:00,432   removing build/bdist.linux-armv7l/wheel
2023-12-03T04:15:00,552   Building wheel for wgs-analysis (setup.py): finished with status 'done'
2023-12-03T04:15:00,556   Created wheel for wgs-analysis: filename=wgs_analysis-0.0.4-py3-none-any.whl size=82266 sha256=f09cf6243200b0ec3576094096445294c5845778bfcf6c93717e1cd83b8ac53e
2023-12-03T04:15:00,557   Stored in directory: /tmp/pip-ephem-wheel-cache-bfh173o7/wheels/dd/8b/69/19f3c7a656b4c73c977e6510158d4c989d759c36188fe22516
2023-12-03T04:15:00,567 Successfully built wgs-analysis
2023-12-03T04:15:00,573 Removed build tracker: '/tmp/pip-build-tracker-j1dvaota'