2023-12-03T04:14:56,101 Created temporary directory: /tmp/pip-build-tracker-j1dvaota 2023-12-03T04:14:56,102 Initialized build tracking at /tmp/pip-build-tracker-j1dvaota 2023-12-03T04:14:56,102 Created build tracker: /tmp/pip-build-tracker-j1dvaota 2023-12-03T04:14:56,103 Entered build tracker: /tmp/pip-build-tracker-j1dvaota 2023-12-03T04:14:56,104 Created temporary directory: /tmp/pip-wheel-kjt9lvty 2023-12-03T04:14:56,107 Created temporary directory: /tmp/pip-ephem-wheel-cache-bfh173o7 2023-12-03T04:14:56,128 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-03T04:14:56,132 2 location(s) to search for versions of wgs-analysis: 2023-12-03T04:14:56,132 * https://pypi.org/simple/wgs-analysis/ 2023-12-03T04:14:56,132 * https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T04:14:56,133 Fetching project page and analyzing links: https://pypi.org/simple/wgs-analysis/ 2023-12-03T04:14:56,133 Getting page https://pypi.org/simple/wgs-analysis/ 2023-12-03T04:14:56,135 Found index url https://pypi.org/simple/ 2023-12-03T04:14:56,344 Fetched page https://pypi.org/simple/wgs-analysis/ as application/vnd.pypi.simple.v1+json 2023-12-03T04:14:56,346 Found link https://files.pythonhosted.org/packages/ea/41/e71b578f8e83982d7807eb45a68c072a55c919b9800542fdff88ee5e5b29/wgs_analysis-0.0.3.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.3 2023-12-03T04:14:56,346 Found link https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.4 2023-12-03T04:14:56,347 Found link https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.5 2023-12-03T04:14:56,348 Fetching project page and analyzing links: https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T04:14:56,348 Getting page https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T04:14:56,350 Found index url https://www.piwheels.org/simple/ 2023-12-03T04:14:56,507 Fetched page https://www.piwheels.org/simple/wgs-analysis/ as text/html 2023-12-03T04:14:56,508 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.3-py3-none-any.whl#sha256=4ac67e1f4ba54135dfcbae668b4d17436fd92a2dd41627f0067d65bffa11f06e (from https://www.piwheels.org/simple/wgs-analysis/) 2023-12-03T04:14:56,509 Skipping link: not a file: https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T04:14:56,510 Skipping link: not a file: https://pypi.org/simple/wgs-analysis/ 2023-12-03T04:14:56,528 Given no hashes to check 1 links for project 'wgs-analysis': discarding no candidates 2023-12-03T04:14:56,546 Collecting wgs-analysis==0.0.4 2023-12-03T04:14:56,548 Created temporary directory: /tmp/pip-unpack-d_6ce6_m 2023-12-03T04:14:56,830 Downloading wgs_analysis-0.0.4.tar.gz (85 kB) 2023-12-03T04:14:56,993 Added wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-j1dvaota' 2023-12-03T04:14:56,996 Running setup.py (path:/tmp/pip-wheel-kjt9lvty/wgs-analysis_f8fd125b04b74befa01e935e93b49dbc/setup.py) egg_info for package wgs-analysis 2023-12-03T04:14:56,996 Created temporary directory: /tmp/pip-pip-egg-info-khpr1g9o 2023-12-03T04:14:56,997 Preparing metadata (setup.py): started 2023-12-03T04:14:56,998 Running command python setup.py egg_info 2023-12-03T04:14:58,115 running egg_info 2023-12-03T04:14:58,117 creating /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info 2023-12-03T04:14:58,141 writing /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/PKG-INFO 2023-12-03T04:14:58,143 writing dependency_links to /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/dependency_links.txt 2023-12-03T04:14:58,146 writing top-level names to /tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/top_level.txt 2023-12-03T04:14:58,147 writing manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T04:14:58,207 reading manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T04:14:58,209 reading manifest template 'MANIFEST.in' 2023-12-03T04:14:58,212 writing manifest file '/tmp/pip-pip-egg-info-khpr1g9o/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T04:14:58,317 Preparing metadata (setup.py): finished with status 'done' 2023-12-03T04:14:58,321 Source in /tmp/pip-wheel-kjt9lvty/wgs-analysis_f8fd125b04b74befa01e935e93b49dbc has version 0.0.4, which satisfies requirement wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz 2023-12-03T04:14:58,322 Removed wgs-analysis==0.0.4 from https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-j1dvaota' 2023-12-03T04:14:58,326 Created temporary directory: /tmp/pip-unpack-jlobt1dp 2023-12-03T04:14:58,327 Created temporary directory: /tmp/pip-unpack-acbi_tsd 2023-12-03T04:14:58,330 Building wheels for collected packages: wgs-analysis 2023-12-03T04:14:58,339 Created temporary directory: /tmp/pip-wheel-_czqjmf1 2023-12-03T04:14:58,339 Building wheel for wgs-analysis (setup.py): started 2023-12-03T04:14:58,341 Destination directory: /tmp/pip-wheel-_czqjmf1 2023-12-03T04:14:58,342 Running command python setup.py bdist_wheel 2023-12-03T04:14:59,436 running bdist_wheel 2023-12-03T04:14:59,513 running build 2023-12-03T04:14:59,514 running build_py 2023-12-03T04:14:59,521 creating build 2023-12-03T04:14:59,522 creating build/lib 2023-12-03T04:14:59,524 creating build/lib/wgs_analysis 2023-12-03T04:14:59,528 copying wgs_analysis/__init__.py -> build/lib/wgs_analysis 2023-12-03T04:14:59,535 copying wgs_analysis/_version.py -> build/lib/wgs_analysis 2023-12-03T04:14:59,540 copying wgs_analysis/refgenome.py -> build/lib/wgs_analysis 2023-12-03T04:14:59,549 creating build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,552 copying wgs_analysis/algorithms/rearrangement.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,561 copying wgs_analysis/algorithms/tree.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,571 copying wgs_analysis/algorithms/cnv.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,582 copying wgs_analysis/algorithms/__init__.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,591 copying wgs_analysis/algorithms/position.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,601 copying wgs_analysis/algorithms/merge.py -> build/lib/wgs_analysis/algorithms 2023-12-03T04:14:59,618 creating build/lib/wgs_analysis/tables 2023-12-03T04:14:59,624 copying wgs_analysis/tables/gene_matrix.py -> build/lib/wgs_analysis/tables 2023-12-03T04:14:59,642 copying wgs_analysis/tables/clones.py -> build/lib/wgs_analysis/tables 2023-12-03T04:14:59,653 copying wgs_analysis/tables/io.py -> build/lib/wgs_analysis/tables 2023-12-03T04:14:59,662 copying wgs_analysis/tables/__init__.py -> build/lib/wgs_analysis/tables 2023-12-03T04:14:59,669 copying wgs_analysis/tables/trees.py -> build/lib/wgs_analysis/tables 2023-12-03T04:14:59,886 creating build/lib/wgs_analysis/utils 2023-12-03T04:14:59,887 copying wgs_analysis/utils/__init__.py -> build/lib/wgs_analysis/utils 2023-12-03T04:14:59,889 copying wgs_analysis/utils/trees.py -> build/lib/wgs_analysis/utils 2023-12-03T04:14:59,891 creating build/lib/wgs_analysis/plots 2023-12-03T04:14:59,892 copying wgs_analysis/plots/circos.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,894 copying wgs_analysis/plots/clones.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,896 copying wgs_analysis/plots/rearrangement.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,898 copying wgs_analysis/plots/singlecell.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,900 copying wgs_analysis/plots/cnv.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,903 copying wgs_analysis/plots/general.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,904 copying wgs_analysis/plots/positions.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,906 copying wgs_analysis/plots/__init__.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,907 copying wgs_analysis/plots/snv.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,909 copying wgs_analysis/plots/trees.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,911 copying wgs_analysis/plots/heatmap.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,913 copying wgs_analysis/plots/utils.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,914 copying wgs_analysis/plots/colors.py -> build/lib/wgs_analysis/plots 2023-12-03T04:14:59,916 creating build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,917 copying wgs_analysis/annotation/rearrangement.py -> build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,919 copying wgs_analysis/annotation/cnv.py -> build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,921 copying wgs_analysis/annotation/__init__.py -> build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,922 copying wgs_analysis/annotation/snv.py -> build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,924 copying wgs_analysis/annotation/position.py -> build/lib/wgs_analysis/annotation 2023-12-03T04:14:59,926 creating build/lib/wgs_analysis/tests 2023-12-03T04:14:59,927 copying wgs_analysis/tests/test_breakpoint_db.py -> build/lib/wgs_analysis/tests 2023-12-03T04:14:59,928 copying wgs_analysis/tests/__init__.py -> build/lib/wgs_analysis/tests 2023-12-03T04:14:59,930 creating build/lib/wgs_analysis/snvs 2023-12-03T04:14:59,931 copying wgs_analysis/snvs/mutsig.py -> build/lib/wgs_analysis/snvs 2023-12-03T04:14:59,933 copying wgs_analysis/snvs/__init__.py -> build/lib/wgs_analysis/snvs 2023-12-03T04:14:59,935 creating build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,936 copying wgs_analysis/experiments/design_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,938 copying wgs_analysis/experiments/design_snv_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,940 copying wgs_analysis/experiments/design_experiment.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,942 copying wgs_analysis/experiments/design_break_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,944 copying wgs_analysis/experiments/design_utils.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,946 copying wgs_analysis/experiments/blat_server.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,948 copying wgs_analysis/experiments/__init__.py -> build/lib/wgs_analysis/experiments 2023-12-03T04:14:59,953 creating build/lib/wgs_analysis/data 2023-12-03T04:14:59,954 copying wgs_analysis/data/GRCh37-lite.fa.fai -> build/lib/wgs_analysis/data 2023-12-03T04:14:59,957 copying wgs_analysis/data/signatures_probabilities.tsv -> build/lib/wgs_analysis/data 2023-12-03T04:14:59,963 UPDATING build/lib/wgs_analysis/_version.py 2023-12-03T04:14:59,964 set build/lib/wgs_analysis/_version.py to '0.0.4' 2023-12-03T04:14:59,989 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-03T04:14:59,989 !! 2023-12-03T04:14:59,990 ******************************************************************************** 2023-12-03T04:14:59,991 Please avoid running ``setup.py`` directly. 2023-12-03T04:14:59,991 Instead, use pypa/build, pypa/installer or other 2023-12-03T04:14:59,992 standards-based tools. 2023-12-03T04:14:59,993 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-03T04:14:59,994 ******************************************************************************** 2023-12-03T04:14:59,995 !! 2023-12-03T04:14:59,995 self.initialize_options() 2023-12-03T04:15:00,013 installing to build/bdist.linux-armv7l/wheel 2023-12-03T04:15:00,014 running install 2023-12-03T04:15:00,038 running install_lib 2023-12-03T04:15:00,061 creating build/bdist.linux-armv7l 2023-12-03T04:15:00,062 creating build/bdist.linux-armv7l/wheel 2023-12-03T04:15:00,063 creating build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T04:15:00,065 creating build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T04:15:00,065 copying build/lib/wgs_analysis/data/GRCh37-lite.fa.fai -> build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T04:15:00,067 copying build/lib/wgs_analysis/data/signatures_probabilities.tsv -> build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T04:15:00,071 creating build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,071 copying build/lib/wgs_analysis/algorithms/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,073 copying build/lib/wgs_analysis/algorithms/tree.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,075 copying build/lib/wgs_analysis/algorithms/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,077 copying build/lib/wgs_analysis/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,079 copying build/lib/wgs_analysis/algorithms/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,080 copying build/lib/wgs_analysis/algorithms/merge.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T04:15:00,083 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,084 copying build/lib/wgs_analysis/tables/gene_matrix.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,086 copying build/lib/wgs_analysis/tables/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,089 copying build/lib/wgs_analysis/tables/io.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,091 copying build/lib/wgs_analysis/tables/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,093 copying build/lib/wgs_analysis/tables/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T04:15:00,096 creating build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T04:15:00,097 copying build/lib/wgs_analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T04:15:00,098 copying build/lib/wgs_analysis/utils/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T04:15:00,101 creating build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,101 copying build/lib/wgs_analysis/plots/circos.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,104 copying build/lib/wgs_analysis/plots/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,105 copying build/lib/wgs_analysis/plots/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,108 copying build/lib/wgs_analysis/plots/singlecell.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,110 copying build/lib/wgs_analysis/plots/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,112 copying build/lib/wgs_analysis/plots/general.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,114 copying build/lib/wgs_analysis/plots/positions.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,116 copying build/lib/wgs_analysis/plots/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,117 copying build/lib/wgs_analysis/plots/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,119 copying build/lib/wgs_analysis/plots/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,121 copying build/lib/wgs_analysis/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,123 copying build/lib/wgs_analysis/plots/utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,125 copying build/lib/wgs_analysis/plots/colors.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T04:15:00,127 creating build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,128 copying build/lib/wgs_analysis/annotation/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,130 copying build/lib/wgs_analysis/annotation/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,132 copying build/lib/wgs_analysis/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,133 copying build/lib/wgs_analysis/annotation/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,135 copying build/lib/wgs_analysis/annotation/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T04:15:00,136 copying build/lib/wgs_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T04:15:00,138 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T04:15:00,139 copying build/lib/wgs_analysis/tests/test_breakpoint_db.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T04:15:00,141 copying build/lib/wgs_analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T04:15:00,142 creating build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T04:15:00,143 copying build/lib/wgs_analysis/snvs/mutsig.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T04:15:00,146 copying build/lib/wgs_analysis/snvs/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T04:15:00,147 creating build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,148 copying build/lib/wgs_analysis/experiments/design_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,150 copying build/lib/wgs_analysis/experiments/design_snv_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,152 copying build/lib/wgs_analysis/experiments/design_experiment.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,155 copying build/lib/wgs_analysis/experiments/design_break_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,157 copying build/lib/wgs_analysis/experiments/design_utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,159 copying build/lib/wgs_analysis/experiments/blat_server.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,160 copying build/lib/wgs_analysis/experiments/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T04:15:00,162 copying build/lib/wgs_analysis/_version.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T04:15:00,163 copying build/lib/wgs_analysis/refgenome.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T04:15:00,165 running install_egg_info 2023-12-03T04:15:00,228 running egg_info 2023-12-03T04:15:00,264 writing wgs_analysis.egg-info/PKG-INFO 2023-12-03T04:15:00,268 writing dependency_links to wgs_analysis.egg-info/dependency_links.txt 2023-12-03T04:15:00,270 writing top-level names to wgs_analysis.egg-info/top_level.txt 2023-12-03T04:15:00,319 reading manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T04:15:00,322 reading manifest template 'MANIFEST.in' 2023-12-03T04:15:00,326 writing manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T04:15:00,327 Copying wgs_analysis.egg-info to build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.4-py3.11.egg-info 2023-12-03T04:15:00,334 running install_scripts 2023-12-03T04:15:00,343 creating build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.4.dist-info/WHEEL 2023-12-03T04:15:00,346 creating '/tmp/pip-wheel-_czqjmf1/wgs_analysis-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-03T04:15:00,348 adding 'wgs_analysis/__init__.py' 2023-12-03T04:15:00,349 adding 'wgs_analysis/_version.py' 2023-12-03T04:15:00,350 adding 'wgs_analysis/refgenome.py' 2023-12-03T04:15:00,352 adding 'wgs_analysis/algorithms/__init__.py' 2023-12-03T04:15:00,353 adding 'wgs_analysis/algorithms/cnv.py' 2023-12-03T04:15:00,354 adding 'wgs_analysis/algorithms/merge.py' 2023-12-03T04:15:00,356 adding 'wgs_analysis/algorithms/position.py' 2023-12-03T04:15:00,357 adding 'wgs_analysis/algorithms/rearrangement.py' 2023-12-03T04:15:00,358 adding 'wgs_analysis/algorithms/tree.py' 2023-12-03T04:15:00,360 adding 'wgs_analysis/annotation/__init__.py' 2023-12-03T04:15:00,361 adding 'wgs_analysis/annotation/cnv.py' 2023-12-03T04:15:00,363 adding 'wgs_analysis/annotation/position.py' 2023-12-03T04:15:00,364 adding 'wgs_analysis/annotation/rearrangement.py' 2023-12-03T04:15:00,365 adding 'wgs_analysis/annotation/snv.py' 2023-12-03T04:15:00,367 adding 'wgs_analysis/data/GRCh37-lite.fa.fai' 2023-12-03T04:15:00,374 adding 'wgs_analysis/data/signatures_probabilities.tsv' 2023-12-03T04:15:00,376 adding 'wgs_analysis/experiments/__init__.py' 2023-12-03T04:15:00,378 adding 'wgs_analysis/experiments/blat_server.py' 2023-12-03T04:15:00,379 adding 'wgs_analysis/experiments/design_break_primers.py' 2023-12-03T04:15:00,381 adding 'wgs_analysis/experiments/design_experiment.py' 2023-12-03T04:15:00,383 adding 'wgs_analysis/experiments/design_primers.py' 2023-12-03T04:15:00,384 adding 'wgs_analysis/experiments/design_snv_primers.py' 2023-12-03T04:15:00,386 adding 'wgs_analysis/experiments/design_utils.py' 2023-12-03T04:15:00,387 adding 'wgs_analysis/plots/__init__.py' 2023-12-03T04:15:00,389 adding 'wgs_analysis/plots/circos.py' 2023-12-03T04:15:00,390 adding 'wgs_analysis/plots/clones.py' 2023-12-03T04:15:00,393 adding 'wgs_analysis/plots/cnv.py' 2023-12-03T04:15:00,395 adding 'wgs_analysis/plots/colors.py' 2023-12-03T04:15:00,396 adding 'wgs_analysis/plots/general.py' 2023-12-03T04:15:00,397 adding 'wgs_analysis/plots/heatmap.py' 2023-12-03T04:15:00,398 adding 'wgs_analysis/plots/positions.py' 2023-12-03T04:15:00,400 adding 'wgs_analysis/plots/rearrangement.py' 2023-12-03T04:15:00,402 adding 'wgs_analysis/plots/singlecell.py' 2023-12-03T04:15:00,404 adding 'wgs_analysis/plots/snv.py' 2023-12-03T04:15:00,405 adding 'wgs_analysis/plots/trees.py' 2023-12-03T04:15:00,407 adding 'wgs_analysis/plots/utils.py' 2023-12-03T04:15:00,409 adding 'wgs_analysis/snvs/__init__.py' 2023-12-03T04:15:00,410 adding 'wgs_analysis/snvs/mutsig.py' 2023-12-03T04:15:00,412 adding 'wgs_analysis/tables/__init__.py' 2023-12-03T04:15:00,414 adding 'wgs_analysis/tables/clones.py' 2023-12-03T04:15:00,416 adding 'wgs_analysis/tables/gene_matrix.py' 2023-12-03T04:15:00,417 adding 'wgs_analysis/tables/io.py' 2023-12-03T04:15:00,419 adding 'wgs_analysis/tables/trees.py' 2023-12-03T04:15:00,421 adding 'wgs_analysis/tests/__init__.py' 2023-12-03T04:15:00,422 adding 'wgs_analysis/tests/test_breakpoint_db.py' 2023-12-03T04:15:00,423 adding 'wgs_analysis/utils/__init__.py' 2023-12-03T04:15:00,425 adding 'wgs_analysis/utils/trees.py' 2023-12-03T04:15:00,426 adding 'wgs_analysis-0.0.4.dist-info/METADATA' 2023-12-03T04:15:00,427 adding 'wgs_analysis-0.0.4.dist-info/WHEEL' 2023-12-03T04:15:00,428 adding 'wgs_analysis-0.0.4.dist-info/top_level.txt' 2023-12-03T04:15:00,429 adding 'wgs_analysis-0.0.4.dist-info/RECORD' 2023-12-03T04:15:00,432 removing build/bdist.linux-armv7l/wheel 2023-12-03T04:15:00,552 Building wheel for wgs-analysis (setup.py): finished with status 'done' 2023-12-03T04:15:00,556 Created wheel for wgs-analysis: filename=wgs_analysis-0.0.4-py3-none-any.whl size=82266 sha256=f09cf6243200b0ec3576094096445294c5845778bfcf6c93717e1cd83b8ac53e 2023-12-03T04:15:00,557 Stored in directory: /tmp/pip-ephem-wheel-cache-bfh173o7/wheels/dd/8b/69/19f3c7a656b4c73c977e6510158d4c989d759c36188fe22516 2023-12-03T04:15:00,567 Successfully built wgs-analysis 2023-12-03T04:15:00,573 Removed build tracker: '/tmp/pip-build-tracker-j1dvaota'