2023-12-03T05:28:34,244 Created temporary directory: /tmp/pip-build-tracker-62fzykqe 2023-12-03T05:28:34,245 Initialized build tracking at /tmp/pip-build-tracker-62fzykqe 2023-12-03T05:28:34,245 Created build tracker: /tmp/pip-build-tracker-62fzykqe 2023-12-03T05:28:34,246 Entered build tracker: /tmp/pip-build-tracker-62fzykqe 2023-12-03T05:28:34,246 Created temporary directory: /tmp/pip-wheel-pmihsi74 2023-12-03T05:28:34,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-qnq6vhf9 2023-12-03T05:28:34,275 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-03T05:28:34,279 2 location(s) to search for versions of wgs-analysis: 2023-12-03T05:28:34,279 * https://pypi.org/simple/wgs-analysis/ 2023-12-03T05:28:34,279 * https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T05:28:34,280 Fetching project page and analyzing links: https://pypi.org/simple/wgs-analysis/ 2023-12-03T05:28:34,281 Getting page https://pypi.org/simple/wgs-analysis/ 2023-12-03T05:28:34,282 Found index url https://pypi.org/simple/ 2023-12-03T05:28:34,421 Fetched page https://pypi.org/simple/wgs-analysis/ as application/vnd.pypi.simple.v1+json 2023-12-03T05:28:34,422 Found link https://files.pythonhosted.org/packages/ea/41/e71b578f8e83982d7807eb45a68c072a55c919b9800542fdff88ee5e5b29/wgs_analysis-0.0.3.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.3 2023-12-03T05:28:34,423 Found link https://files.pythonhosted.org/packages/5e/4f/9c5fb434c620bd827da77df5c6fd3464951f6c1b9cb064baa81069dbeb30/wgs_analysis-0.0.4.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.4 2023-12-03T05:28:34,424 Found link https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz (from https://pypi.org/simple/wgs-analysis/), version: 0.0.5 2023-12-03T05:28:34,424 Fetching project page and analyzing links: https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T05:28:34,425 Getting page https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T05:28:34,426 Found index url https://www.piwheels.org/simple/ 2023-12-03T05:28:34,592 Fetched page https://www.piwheels.org/simple/wgs-analysis/ as text/html 2023-12-03T05:28:34,594 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.4-py3-none-any.whl#sha256=f09cf6243200b0ec3576094096445294c5845778bfcf6c93717e1cd83b8ac53e (from https://www.piwheels.org/simple/wgs-analysis/) 2023-12-03T05:28:34,594 Skipping link: No binaries permitted for wgs-analysis: https://www.piwheels.org/simple/wgs-analysis/wgs_analysis-0.0.3-py3-none-any.whl#sha256=4ac67e1f4ba54135dfcbae668b4d17436fd92a2dd41627f0067d65bffa11f06e (from https://www.piwheels.org/simple/wgs-analysis/) 2023-12-03T05:28:34,595 Skipping link: not a file: https://www.piwheels.org/simple/wgs-analysis/ 2023-12-03T05:28:34,596 Skipping link: not a file: https://pypi.org/simple/wgs-analysis/ 2023-12-03T05:28:34,615 Given no hashes to check 1 links for project 'wgs-analysis': discarding no candidates 2023-12-03T05:28:34,633 Collecting wgs-analysis==0.0.5 2023-12-03T05:28:34,635 Created temporary directory: /tmp/pip-unpack-glci2lm2 2023-12-03T05:28:34,849 Downloading wgs_analysis-0.0.5.tar.gz (87 kB) 2023-12-03T05:28:35,019 Added wgs-analysis==0.0.5 from https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-62fzykqe' 2023-12-03T05:28:35,022 Running setup.py (path:/tmp/pip-wheel-pmihsi74/wgs-analysis_6539d0c9705c4817b7c173d8907eff76/setup.py) egg_info for package wgs-analysis 2023-12-03T05:28:35,022 Created temporary directory: /tmp/pip-pip-egg-info-trzs26sr 2023-12-03T05:28:35,023 Preparing metadata (setup.py): started 2023-12-03T05:28:35,025 Running command python setup.py egg_info 2023-12-03T05:28:36,159 running egg_info 2023-12-03T05:28:36,160 creating /tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info 2023-12-03T05:28:36,184 writing /tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/PKG-INFO 2023-12-03T05:28:36,187 writing dependency_links to /tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/dependency_links.txt 2023-12-03T05:28:36,189 writing top-level names to /tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/top_level.txt 2023-12-03T05:28:36,191 writing manifest file '/tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T05:28:36,250 reading manifest file '/tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T05:28:36,252 reading manifest template 'MANIFEST.in' 2023-12-03T05:28:36,255 writing manifest file '/tmp/pip-pip-egg-info-trzs26sr/wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T05:28:36,361 Preparing metadata (setup.py): finished with status 'done' 2023-12-03T05:28:36,364 Source in /tmp/pip-wheel-pmihsi74/wgs-analysis_6539d0c9705c4817b7c173d8907eff76 has version 0.0.5, which satisfies requirement wgs-analysis==0.0.5 from https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz 2023-12-03T05:28:36,365 Removed wgs-analysis==0.0.5 from https://files.pythonhosted.org/packages/ed/34/ebc409184e6fe5e6ef11da4afcb409c6ed8a1e94bbdaf21ae8dd106cc77d/wgs_analysis-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-62fzykqe' 2023-12-03T05:28:36,369 Created temporary directory: /tmp/pip-unpack-veks0vvw 2023-12-03T05:28:36,370 Created temporary directory: /tmp/pip-unpack-lf0gi_9s 2023-12-03T05:28:36,372 Building wheels for collected packages: wgs-analysis 2023-12-03T05:28:36,376 Created temporary directory: /tmp/pip-wheel-ca50_2id 2023-12-03T05:28:36,377 Building wheel for wgs-analysis (setup.py): started 2023-12-03T05:28:36,378 Destination directory: /tmp/pip-wheel-ca50_2id 2023-12-03T05:28:36,379 Running command python setup.py bdist_wheel 2023-12-03T05:28:37,382 running bdist_wheel 2023-12-03T05:28:37,450 running build 2023-12-03T05:28:37,451 running build_py 2023-12-03T05:28:37,455 creating build 2023-12-03T05:28:37,456 creating build/lib 2023-12-03T05:28:37,456 creating build/lib/wgs_analysis 2023-12-03T05:28:37,457 copying wgs_analysis/__init__.py -> build/lib/wgs_analysis 2023-12-03T05:28:37,459 copying wgs_analysis/refgenome.py -> build/lib/wgs_analysis 2023-12-03T05:28:37,461 copying wgs_analysis/_version.py -> build/lib/wgs_analysis 2023-12-03T05:28:37,463 creating build/lib/wgs_analysis/snvs 2023-12-03T05:28:37,464 copying wgs_analysis/snvs/__init__.py -> build/lib/wgs_analysis/snvs 2023-12-03T05:28:37,465 copying wgs_analysis/snvs/mutsig.py -> build/lib/wgs_analysis/snvs 2023-12-03T05:28:37,468 creating build/lib/wgs_analysis/utils 2023-12-03T05:28:37,469 copying wgs_analysis/utils/__init__.py -> build/lib/wgs_analysis/utils 2023-12-03T05:28:37,470 copying wgs_analysis/utils/trees.py -> build/lib/wgs_analysis/utils 2023-12-03T05:28:37,472 creating build/lib/wgs_analysis/tests 2023-12-03T05:28:37,473 copying wgs_analysis/tests/__init__.py -> build/lib/wgs_analysis/tests 2023-12-03T05:28:37,475 copying wgs_analysis/tests/test_breakpoint_db.py -> build/lib/wgs_analysis/tests 2023-12-03T05:28:37,477 creating build/lib/wgs_analysis/tables 2023-12-03T05:28:37,478 copying wgs_analysis/tables/__init__.py -> build/lib/wgs_analysis/tables 2023-12-03T05:28:37,480 copying wgs_analysis/tables/gene_matrix.py -> build/lib/wgs_analysis/tables 2023-12-03T05:28:37,482 copying wgs_analysis/tables/trees.py -> build/lib/wgs_analysis/tables 2023-12-03T05:28:37,484 copying wgs_analysis/tables/clones.py -> build/lib/wgs_analysis/tables 2023-12-03T05:28:37,486 copying wgs_analysis/tables/io.py -> build/lib/wgs_analysis/tables 2023-12-03T05:28:37,488 creating build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,489 copying wgs_analysis/annotation/snv.py -> build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,491 copying wgs_analysis/annotation/cnv.py -> build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,493 copying wgs_analysis/annotation/__init__.py -> build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,495 copying wgs_analysis/annotation/position.py -> build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,497 copying wgs_analysis/annotation/rearrangement.py -> build/lib/wgs_analysis/annotation 2023-12-03T05:28:37,499 creating build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,500 copying wgs_analysis/experiments/design_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,502 copying wgs_analysis/experiments/__init__.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,504 copying wgs_analysis/experiments/design_experiment.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,506 copying wgs_analysis/experiments/design_utils.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,507 copying wgs_analysis/experiments/blat_server.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,509 copying wgs_analysis/experiments/design_break_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,511 copying wgs_analysis/experiments/design_snv_primers.py -> build/lib/wgs_analysis/experiments 2023-12-03T05:28:37,514 creating build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,514 copying wgs_analysis/algorithms/cnv.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,517 copying wgs_analysis/algorithms/__init__.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,518 copying wgs_analysis/algorithms/position.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,519 copying wgs_analysis/algorithms/merge.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,521 copying wgs_analysis/algorithms/rearrangement.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,523 copying wgs_analysis/algorithms/tree.py -> build/lib/wgs_analysis/algorithms 2023-12-03T05:28:37,526 creating build/lib/wgs_analysis/plots 2023-12-03T05:28:37,527 copying wgs_analysis/plots/snv.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,529 copying wgs_analysis/plots/cnv.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,532 copying wgs_analysis/plots/heatmap.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,533 copying wgs_analysis/plots/__init__.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,534 copying wgs_analysis/plots/trees.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,536 copying wgs_analysis/plots/utils.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,538 copying wgs_analysis/plots/colors.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,539 copying wgs_analysis/plots/circos.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,542 copying wgs_analysis/plots/clones.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,543 copying wgs_analysis/plots/rearrangement.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,545 copying wgs_analysis/plots/singlecell.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,547 copying wgs_analysis/plots/general.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,549 copying wgs_analysis/plots/positions.py -> build/lib/wgs_analysis/plots 2023-12-03T05:28:37,556 creating build/lib/wgs_analysis/data 2023-12-03T05:28:37,557 copying wgs_analysis/data/signatures_probabilities.tsv -> build/lib/wgs_analysis/data 2023-12-03T05:28:37,560 copying wgs_analysis/data/GRCh37-lite.fa.fai -> build/lib/wgs_analysis/data 2023-12-03T05:28:37,562 copying wgs_analysis/data/GRCh38.fa.fai -> build/lib/wgs_analysis/data 2023-12-03T05:28:37,568 UPDATING build/lib/wgs_analysis/_version.py 2023-12-03T05:28:37,569 set build/lib/wgs_analysis/_version.py to '0.0.5' 2023-12-03T05:28:37,593 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-03T05:28:37,594 !! 2023-12-03T05:28:37,595 ******************************************************************************** 2023-12-03T05:28:37,596 Please avoid running ``setup.py`` directly. 2023-12-03T05:28:37,596 Instead, use pypa/build, pypa/installer or other 2023-12-03T05:28:37,597 standards-based tools. 2023-12-03T05:28:37,598 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-03T05:28:37,599 ******************************************************************************** 2023-12-03T05:28:37,600 !! 2023-12-03T05:28:37,600 self.initialize_options() 2023-12-03T05:28:37,619 installing to build/bdist.linux-armv7l/wheel 2023-12-03T05:28:37,619 running install 2023-12-03T05:28:37,642 running install_lib 2023-12-03T05:28:37,665 creating build/bdist.linux-armv7l 2023-12-03T05:28:37,666 creating build/bdist.linux-armv7l/wheel 2023-12-03T05:28:37,667 creating build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T05:28:37,669 creating build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T05:28:37,670 copying build/lib/wgs_analysis/snvs/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T05:28:37,671 copying build/lib/wgs_analysis/snvs/mutsig.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/snvs 2023-12-03T05:28:37,674 creating build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T05:28:37,675 copying build/lib/wgs_analysis/utils/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T05:28:37,676 copying build/lib/wgs_analysis/utils/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/utils 2023-12-03T05:28:37,678 creating build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T05:28:37,679 copying build/lib/wgs_analysis/data/signatures_probabilities.tsv -> build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T05:28:37,682 copying build/lib/wgs_analysis/data/GRCh37-lite.fa.fai -> build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T05:28:37,684 copying build/lib/wgs_analysis/data/GRCh38.fa.fai -> build/bdist.linux-armv7l/wheel/wgs_analysis/data 2023-12-03T05:28:37,685 copying build/lib/wgs_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T05:28:37,687 copying build/lib/wgs_analysis/refgenome.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T05:28:37,689 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T05:28:37,690 copying build/lib/wgs_analysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T05:28:37,692 copying build/lib/wgs_analysis/tests/test_breakpoint_db.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tests 2023-12-03T05:28:37,694 creating build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,695 copying build/lib/wgs_analysis/tables/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,697 copying build/lib/wgs_analysis/tables/gene_matrix.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,699 copying build/lib/wgs_analysis/tables/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,701 copying build/lib/wgs_analysis/tables/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,703 copying build/lib/wgs_analysis/tables/io.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/tables 2023-12-03T05:28:37,705 copying build/lib/wgs_analysis/_version.py -> build/bdist.linux-armv7l/wheel/wgs_analysis 2023-12-03T05:28:37,707 creating build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,708 copying build/lib/wgs_analysis/annotation/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,710 copying build/lib/wgs_analysis/annotation/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,713 copying build/lib/wgs_analysis/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,714 copying build/lib/wgs_analysis/annotation/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,716 copying build/lib/wgs_analysis/annotation/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/annotation 2023-12-03T05:28:37,719 creating build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,720 copying build/lib/wgs_analysis/experiments/design_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,722 copying build/lib/wgs_analysis/experiments/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,723 copying build/lib/wgs_analysis/experiments/design_experiment.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,726 copying build/lib/wgs_analysis/experiments/design_utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,727 copying build/lib/wgs_analysis/experiments/blat_server.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,729 copying build/lib/wgs_analysis/experiments/design_break_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,731 copying build/lib/wgs_analysis/experiments/design_snv_primers.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/experiments 2023-12-03T05:28:37,734 creating build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,735 copying build/lib/wgs_analysis/algorithms/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,737 copying build/lib/wgs_analysis/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,738 copying build/lib/wgs_analysis/algorithms/position.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,740 copying build/lib/wgs_analysis/algorithms/merge.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,742 copying build/lib/wgs_analysis/algorithms/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,744 copying build/lib/wgs_analysis/algorithms/tree.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/algorithms 2023-12-03T05:28:37,746 creating build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,747 copying build/lib/wgs_analysis/plots/snv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,750 copying build/lib/wgs_analysis/plots/cnv.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,752 copying build/lib/wgs_analysis/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,754 copying build/lib/wgs_analysis/plots/__init__.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,756 copying build/lib/wgs_analysis/plots/trees.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,758 copying build/lib/wgs_analysis/plots/utils.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,760 copying build/lib/wgs_analysis/plots/colors.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,762 copying build/lib/wgs_analysis/plots/circos.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,764 copying build/lib/wgs_analysis/plots/clones.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,766 copying build/lib/wgs_analysis/plots/rearrangement.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,768 copying build/lib/wgs_analysis/plots/singlecell.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,771 copying build/lib/wgs_analysis/plots/general.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,773 copying build/lib/wgs_analysis/plots/positions.py -> build/bdist.linux-armv7l/wheel/wgs_analysis/plots 2023-12-03T05:28:37,774 running install_egg_info 2023-12-03T05:28:37,834 running egg_info 2023-12-03T05:28:37,858 writing wgs_analysis.egg-info/PKG-INFO 2023-12-03T05:28:37,861 writing dependency_links to wgs_analysis.egg-info/dependency_links.txt 2023-12-03T05:28:37,863 writing top-level names to wgs_analysis.egg-info/top_level.txt 2023-12-03T05:28:37,896 reading manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T05:28:37,899 reading manifest template 'MANIFEST.in' 2023-12-03T05:28:37,903 writing manifest file 'wgs_analysis.egg-info/SOURCES.txt' 2023-12-03T05:28:37,905 Copying wgs_analysis.egg-info to build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.5-py3.11.egg-info 2023-12-03T05:28:37,913 running install_scripts 2023-12-03T05:28:37,921 creating build/bdist.linux-armv7l/wheel/wgs_analysis-0.0.5.dist-info/WHEEL 2023-12-03T05:28:37,923 creating '/tmp/pip-wheel-ca50_2id/wgs_analysis-0.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-03T05:28:37,925 adding 'wgs_analysis/__init__.py' 2023-12-03T05:28:37,927 adding 'wgs_analysis/_version.py' 2023-12-03T05:28:37,928 adding 'wgs_analysis/refgenome.py' 2023-12-03T05:28:37,930 adding 'wgs_analysis/algorithms/__init__.py' 2023-12-03T05:28:37,931 adding 'wgs_analysis/algorithms/cnv.py' 2023-12-03T05:28:37,933 adding 'wgs_analysis/algorithms/merge.py' 2023-12-03T05:28:37,934 adding 'wgs_analysis/algorithms/position.py' 2023-12-03T05:28:37,935 adding 'wgs_analysis/algorithms/rearrangement.py' 2023-12-03T05:28:37,937 adding 'wgs_analysis/algorithms/tree.py' 2023-12-03T05:28:37,939 adding 'wgs_analysis/annotation/__init__.py' 2023-12-03T05:28:37,940 adding 'wgs_analysis/annotation/cnv.py' 2023-12-03T05:28:37,941 adding 'wgs_analysis/annotation/position.py' 2023-12-03T05:28:37,943 adding 'wgs_analysis/annotation/rearrangement.py' 2023-12-03T05:28:37,944 adding 'wgs_analysis/annotation/snv.py' 2023-12-03T05:28:37,946 adding 'wgs_analysis/data/GRCh37-lite.fa.fai' 2023-12-03T05:28:37,947 adding 'wgs_analysis/data/GRCh38.fa.fai' 2023-12-03T05:28:37,954 adding 'wgs_analysis/data/signatures_probabilities.tsv' 2023-12-03T05:28:37,956 adding 'wgs_analysis/experiments/__init__.py' 2023-12-03T05:28:37,957 adding 'wgs_analysis/experiments/blat_server.py' 2023-12-03T05:28:37,959 adding 'wgs_analysis/experiments/design_break_primers.py' 2023-12-03T05:28:37,961 adding 'wgs_analysis/experiments/design_experiment.py' 2023-12-03T05:28:37,963 adding 'wgs_analysis/experiments/design_primers.py' 2023-12-03T05:28:37,964 adding 'wgs_analysis/experiments/design_snv_primers.py' 2023-12-03T05:28:37,965 adding 'wgs_analysis/experiments/design_utils.py' 2023-12-03T05:28:37,967 adding 'wgs_analysis/plots/__init__.py' 2023-12-03T05:28:37,969 adding 'wgs_analysis/plots/circos.py' 2023-12-03T05:28:37,970 adding 'wgs_analysis/plots/clones.py' 2023-12-03T05:28:37,973 adding 'wgs_analysis/plots/cnv.py' 2023-12-03T05:28:37,975 adding 'wgs_analysis/plots/colors.py' 2023-12-03T05:28:37,976 adding 'wgs_analysis/plots/general.py' 2023-12-03T05:28:37,977 adding 'wgs_analysis/plots/heatmap.py' 2023-12-03T05:28:37,978 adding 'wgs_analysis/plots/positions.py' 2023-12-03T05:28:37,981 adding 'wgs_analysis/plots/rearrangement.py' 2023-12-03T05:28:37,983 adding 'wgs_analysis/plots/singlecell.py' 2023-12-03T05:28:37,984 adding 'wgs_analysis/plots/snv.py' 2023-12-03T05:28:37,986 adding 'wgs_analysis/plots/trees.py' 2023-12-03T05:28:37,987 adding 'wgs_analysis/plots/utils.py' 2023-12-03T05:28:37,989 adding 'wgs_analysis/snvs/__init__.py' 2023-12-03T05:28:37,991 adding 'wgs_analysis/snvs/mutsig.py' 2023-12-03T05:28:37,993 adding 'wgs_analysis/tables/__init__.py' 2023-12-03T05:28:37,995 adding 'wgs_analysis/tables/clones.py' 2023-12-03T05:28:37,996 adding 'wgs_analysis/tables/gene_matrix.py' 2023-12-03T05:28:37,998 adding 'wgs_analysis/tables/io.py' 2023-12-03T05:28:38,000 adding 'wgs_analysis/tables/trees.py' 2023-12-03T05:28:38,002 adding 'wgs_analysis/tests/__init__.py' 2023-12-03T05:28:38,003 adding 'wgs_analysis/tests/test_breakpoint_db.py' 2023-12-03T05:28:38,005 adding 'wgs_analysis/utils/__init__.py' 2023-12-03T05:28:38,006 adding 'wgs_analysis/utils/trees.py' 2023-12-03T05:28:38,008 adding 'wgs_analysis-0.0.5.dist-info/METADATA' 2023-12-03T05:28:38,009 adding 'wgs_analysis-0.0.5.dist-info/WHEEL' 2023-12-03T05:28:38,010 adding 'wgs_analysis-0.0.5.dist-info/top_level.txt' 2023-12-03T05:28:38,011 adding 'wgs_analysis-0.0.5.dist-info/RECORD' 2023-12-03T05:28:38,013 removing build/bdist.linux-armv7l/wheel 2023-12-03T05:28:38,135 Building wheel for wgs-analysis (setup.py): finished with status 'done' 2023-12-03T05:28:38,138 Created wheel for wgs-analysis: filename=wgs_analysis-0.0.5-py3-none-any.whl size=84351 sha256=1e3d9db0b923ec19958bc3323e01451d5df339a188209616ea356719dacae254 2023-12-03T05:28:38,140 Stored in directory: /tmp/pip-ephem-wheel-cache-qnq6vhf9/wheels/a1/04/1d/6ba6c3c95a360146646efb899009ef4c8bdb5ee6dcab808739 2023-12-03T05:28:38,150 Successfully built wgs-analysis 2023-12-03T05:28:38,156 Removed build tracker: '/tmp/pip-build-tracker-62fzykqe'