2023-12-05T00:35:42,307 Created temporary directory: /tmp/pip-build-tracker-7azwrtep 2023-12-05T00:35:42,308 Initialized build tracking at /tmp/pip-build-tracker-7azwrtep 2023-12-05T00:35:42,309 Created build tracker: /tmp/pip-build-tracker-7azwrtep 2023-12-05T00:35:42,309 Entered build tracker: /tmp/pip-build-tracker-7azwrtep 2023-12-05T00:35:42,310 Created temporary directory: /tmp/pip-wheel-oibhf9t6 2023-12-05T00:35:42,313 Created temporary directory: /tmp/pip-ephem-wheel-cache-4skdkq1k 2023-12-05T00:35:42,339 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-05T00:35:42,342 2 location(s) to search for versions of sequana: 2023-12-05T00:35:42,342 * https://pypi.org/simple/sequana/ 2023-12-05T00:35:42,342 * https://www.piwheels.org/simple/sequana/ 2023-12-05T00:35:42,343 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-12-05T00:35:42,344 Getting page https://pypi.org/simple/sequana/ 2023-12-05T00:35:42,345 Found index url https://pypi.org/simple/ 2023-12-05T00:35:42,564 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-12-05T00:35:42,579 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-12-05T00:35:42,580 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-12-05T00:35:42,581 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-12-05T00:35:42,581 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), 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2023-12-05T00:35:42,862 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.3.0-py3-none-any.whl#sha256=784c45559b3813a77c854c88c7f87f069fc80854dab49c4ce554d9e8d955bfee (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,862 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.1-py3-none-any.whl#sha256=6c243101661c5b7e001970929b3f0854775ff25ec464016bac56bed727d1af42 (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,863 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.0-py3-none-any.whl#sha256=3f93bab506968797bfa09bd546a7890f00035664062d87d06c5cc0cae18ae47d (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,863 Skipping link: No binaries permitted for sequana: 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2023-12-05T00:35:42,869 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.10-py3-none-any.whl#sha256=407656fa50b3fc2277e6d63fcd545fc4e9c13092a89a2a5cc782f84d008725b5 (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,870 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.9-py3-none-any.whl#sha256=d388a5c84fd9f1adb5094860b47e54b8ec1fc5dd60da99b5b7a4bd92471e1e5b (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,870 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.8-py3-none-any.whl#sha256=25d68d94847d23aecd8d532f01ab95b7a8318fb5dc9ad5bbc87731b0968dc4ea (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,871 Skipping link: No binaries permitted for sequana: 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2023-12-05T00:35:42,873 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,873 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,874 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,874 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,875 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-12-05T00:35:42,876 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-12-05T00:35:42,876 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-12-05T00:35:42,906 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-12-05T00:35:42,924 Collecting sequana==0.16.2 2023-12-05T00:35:42,927 Created temporary directory: /tmp/pip-unpack-jvdgpen1 2023-12-05T00:35:43,149 Downloading sequana-0.16.2.tar.gz (13.6 MB) 2023-12-05T00:35:49,669 Added sequana==0.16.2 from https://files.pythonhosted.org/packages/9a/c7/8503ef6117a466d778212e65b96c225133667050af2b2651bf8827af7b87/sequana-0.16.2.tar.gz to build tracker '/tmp/pip-build-tracker-7azwrtep' 2023-12-05T00:35:49,671 Running setup.py (path:/tmp/pip-wheel-oibhf9t6/sequana_f679bef8ad084a60aa00f681213255ef/setup.py) egg_info for package sequana 2023-12-05T00:35:49,672 Created temporary directory: /tmp/pip-pip-egg-info-rzlt_z9g 2023-12-05T00:35:49,673 Preparing metadata (setup.py): started 2023-12-05T00:35:49,675 Running command python setup.py egg_info 2023-12-05T00:35:50,798 running egg_info 2023-12-05T00:35:50,800 creating /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info 2023-12-05T00:35:50,836 writing /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/PKG-INFO 2023-12-05T00:35:50,852 writing dependency_links to /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/dependency_links.txt 2023-12-05T00:35:50,854 writing entry points to /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/entry_points.txt 2023-12-05T00:35:50,859 writing requirements to /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/requires.txt 2023-12-05T00:35:50,860 writing top-level names to /tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/top_level.txt 2023-12-05T00:35:50,862 writing manifest file '/tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/SOURCES.txt' 2023-12-05T00:35:51,134 reading manifest file '/tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/SOURCES.txt' 2023-12-05T00:35:51,136 reading manifest template 'MANIFEST.in' 2023-12-05T00:35:51,138 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-05T00:35:51,140 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-05T00:35:51,316 warning: no files found matching 'test/requirements*txt' 2023-12-05T00:35:51,318 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-05T00:35:51,319 warning: no previously-included files matching '*' found under directory 'test' 2023-12-05T00:35:51,319 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-05T00:35:51,320 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-05T00:35:51,321 adding license file 'LICENSE' 2023-12-05T00:35:51,333 writing manifest file '/tmp/pip-pip-egg-info-rzlt_z9g/sequana.egg-info/SOURCES.txt' 2023-12-05T00:35:51,439 Preparing metadata (setup.py): finished with status 'done' 2023-12-05T00:35:51,444 Source in /tmp/pip-wheel-oibhf9t6/sequana_f679bef8ad084a60aa00f681213255ef has version 0.16.2, which satisfies requirement sequana==0.16.2 from https://files.pythonhosted.org/packages/9a/c7/8503ef6117a466d778212e65b96c225133667050af2b2651bf8827af7b87/sequana-0.16.2.tar.gz 2023-12-05T00:35:51,445 Removed sequana==0.16.2 from https://files.pythonhosted.org/packages/9a/c7/8503ef6117a466d778212e65b96c225133667050af2b2651bf8827af7b87/sequana-0.16.2.tar.gz from build tracker '/tmp/pip-build-tracker-7azwrtep' 2023-12-05T00:35:51,452 Created temporary directory: /tmp/pip-unpack-zkx63jmy 2023-12-05T00:35:51,453 Created temporary directory: /tmp/pip-unpack-axm5c822 2023-12-05T00:35:51,541 Building wheels for collected packages: sequana 2023-12-05T00:35:51,546 Created temporary directory: /tmp/pip-wheel-hloykwqz 2023-12-05T00:35:51,547 Building wheel for sequana (setup.py): started 2023-12-05T00:35:51,548 Destination directory: /tmp/pip-wheel-hloykwqz 2023-12-05T00:35:51,549 Running command python setup.py bdist_wheel 2023-12-05T00:35:52,637 running bdist_wheel 2023-12-05T00:35:52,736 running build 2023-12-05T00:35:52,737 running build_py 2023-12-05T00:35:52,766 creating build 2023-12-05T00:35:52,767 creating build/lib 2023-12-05T00:35:52,768 creating build/lib/sequana 2023-12-05T00:35:52,769 copying sequana/phantom.py -> build/lib/sequana 2023-12-05T00:35:52,772 copying sequana/tools.py -> build/lib/sequana 2023-12-05T00:35:52,775 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-12-05T00:35:52,778 copying sequana/trf.py -> build/lib/sequana 2023-12-05T00:35:52,780 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-12-05T00:35:52,783 copying sequana/databases.py -> build/lib/sequana 2023-12-05T00:35:52,786 copying sequana/bedtools.py -> build/lib/sequana 2023-12-05T00:35:52,790 copying sequana/cnv.py -> build/lib/sequana 2023-12-05T00:35:52,792 copying sequana/bed.py -> build/lib/sequana 2023-12-05T00:35:52,794 copying sequana/phred.py -> build/lib/sequana 2023-12-05T00:35:52,796 copying sequana/summary.py -> build/lib/sequana 2023-12-05T00:35:52,799 copying sequana/datatools.py -> build/lib/sequana 2023-12-05T00:35:52,802 copying sequana/bamtools.py -> build/lib/sequana 2023-12-05T00:35:52,805 copying sequana/sequence.py -> build/lib/sequana 2023-12-05T00:35:52,809 copying sequana/atac.py -> build/lib/sequana 2023-12-05T00:35:52,811 copying sequana/idr.py -> build/lib/sequana 2023-12-05T00:35:52,813 copying sequana/genbank.py -> build/lib/sequana 2023-12-05T00:35:52,815 copying sequana/sniffer.py -> build/lib/sequana 2023-12-05T00:35:52,818 copying sequana/gff3_eggnog.py -> build/lib/sequana 2023-12-05T00:35:52,821 copying sequana/macs3.py -> build/lib/sequana 2023-12-05T00:35:52,824 copying sequana/homer.py -> build/lib/sequana 2023-12-05T00:35:52,826 copying sequana/coverage.py -> build/lib/sequana 2023-12-05T00:35:52,828 copying sequana/compare.py -> build/lib/sequana 2023-12-05T00:35:52,831 copying sequana/lazyimports.py -> build/lib/sequana 2023-12-05T00:35:52,833 copying sequana/featurecounts.py -> build/lib/sequana 2023-12-05T00:35:52,836 copying sequana/frip.py -> build/lib/sequana 2023-12-05T00:35:52,838 copying sequana/vcf_filter.py -> build/lib/sequana 2023-12-05T00:35:52,841 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-12-05T00:35:52,843 copying sequana/lazy.py -> build/lib/sequana 2023-12-05T00:35:52,845 copying sequana/cpg_islands.py -> build/lib/sequana 2023-12-05T00:35:52,847 copying sequana/laa.py -> build/lib/sequana 2023-12-05T00:35:52,849 copying sequana/annotation.py -> build/lib/sequana 2023-12-05T00:35:52,851 copying sequana/fasta.py -> build/lib/sequana 2023-12-05T00:35:52,854 copying sequana/mpileup.py -> build/lib/sequana 2023-12-05T00:35:52,856 copying sequana/diamond.py -> build/lib/sequana 2023-12-05T00:35:52,859 copying sequana/rnadiff.py -> build/lib/sequana 2023-12-05T00:35:52,862 copying sequana/find_motif.py -> build/lib/sequana 2023-12-05T00:35:52,865 copying sequana/mgi.py -> build/lib/sequana 2023-12-05T00:35:52,867 copying sequana/assembly.py -> build/lib/sequana 2023-12-05T00:35:52,869 copying sequana/demultiplex.py -> build/lib/sequana 2023-12-05T00:35:52,872 copying sequana/pacbio.py -> build/lib/sequana 2023-12-05T00:35:52,875 copying sequana/cigar.py -> build/lib/sequana 2023-12-05T00:35:52,877 copying sequana/fastqc.py -> build/lib/sequana 2023-12-05T00:35:52,879 copying sequana/iuapc.py -> build/lib/sequana 2023-12-05T00:35:52,882 copying sequana/stats.py -> build/lib/sequana 2023-12-05T00:35:52,884 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-12-05T00:35:52,887 copying sequana/protein.py -> build/lib/sequana 2023-12-05T00:35:52,889 copying sequana/snpeff.py -> build/lib/sequana 2023-12-05T00:35:52,891 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-12-05T00:35:52,894 copying sequana/mh.py -> build/lib/sequana 2023-12-05T00:35:52,896 copying sequana/vst.py -> build/lib/sequana 2023-12-05T00:35:52,898 copying sequana/codon.py -> build/lib/sequana 2023-12-05T00:35:52,900 copying sequana/gff3.py -> build/lib/sequana 2023-12-05T00:35:52,904 copying sequana/mixture.py -> build/lib/sequana 2023-12-05T00:35:52,906 copying sequana/kosak.py -> build/lib/sequana 2023-12-05T00:35:52,908 copying sequana/isoseq.py -> build/lib/sequana 2023-12-05T00:35:52,911 copying sequana/kegg.py -> build/lib/sequana 2023-12-05T00:35:52,913 copying sequana/vcftools.py -> build/lib/sequana 2023-12-05T00:35:52,915 copying sequana/fastq.py -> build/lib/sequana 2023-12-05T00:35:52,918 copying sequana/running_median.py -> build/lib/sequana 2023-12-05T00:35:52,920 copying sequana/test.py -> build/lib/sequana 2023-12-05T00:35:52,922 copying sequana/taxonomy.py -> build/lib/sequana 2023-12-05T00:35:52,924 copying sequana/krona.py -> build/lib/sequana 2023-12-05T00:35:52,926 copying sequana/contigs.py -> build/lib/sequana 2023-12-05T00:35:52,929 copying sequana/misc.py -> build/lib/sequana 2023-12-05T00:35:52,931 copying sequana/errors.py -> build/lib/sequana 2023-12-05T00:35:52,933 copying sequana/criteria.py -> build/lib/sequana 2023-12-05T00:35:52,935 copying sequana/itol.py -> build/lib/sequana 2023-12-05T00:35:52,937 copying sequana/canu_scanner.py -> build/lib/sequana 2023-12-05T00:35:52,939 copying sequana/kmer.py -> build/lib/sequana 2023-12-05T00:35:52,941 copying sequana/G4hunter.py -> build/lib/sequana 2023-12-05T00:35:52,943 copying sequana/__init__.py -> build/lib/sequana 2023-12-05T00:35:52,945 copying sequana/iem.py -> build/lib/sequana 2023-12-05T00:35:52,947 copying sequana/ribodesigner.py -> build/lib/sequana 2023-12-05T00:35:52,949 copying sequana/salmon.py -> build/lib/sequana 2023-12-05T00:35:52,952 creating build/lib/sequana/cython 2023-12-05T00:35:52,953 copying sequana/cython/setup.py -> build/lib/sequana/cython 2023-12-05T00:35:52,954 copying sequana/cython/__init__.py -> build/lib/sequana/cython 2023-12-05T00:35:52,956 creating build/lib/sequana/kraken 2023-12-05T00:35:52,957 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-12-05T00:35:52,960 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-12-05T00:35:52,963 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-12-05T00:35:52,964 creating build/lib/sequana/resources 2023-12-05T00:35:52,965 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-12-05T00:35:52,967 creating build/lib/sequana/plots 2023-12-05T00:35:52,968 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-12-05T00:35:52,970 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-12-05T00:35:52,972 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-12-05T00:35:52,974 creating build/lib/sequana/scripts 2023-12-05T00:35:52,975 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,977 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,979 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,981 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,983 copying sequana/scripts/utils.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,985 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-12-05T00:35:52,987 creating build/lib/sequana/utils 2023-12-05T00:35:52,988 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-12-05T00:35:52,991 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-12-05T00:35:52,993 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-12-05T00:35:52,994 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-12-05T00:35:52,996 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-12-05T00:35:52,998 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-12-05T00:35:53,000 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-12-05T00:35:53,002 creating build/lib/sequana/rules 2023-12-05T00:35:53,003 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2023-12-05T00:35:53,005 creating build/lib/sequana/viz 2023-12-05T00:35:53,006 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-12-05T00:35:53,008 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-12-05T00:35:53,010 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-12-05T00:35:53,013 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-12-05T00:35:53,015 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-12-05T00:35:53,017 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-12-05T00:35:53,019 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-12-05T00:35:53,021 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-12-05T00:35:53,023 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-12-05T00:35:53,025 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-12-05T00:35:53,026 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-12-05T00:35:53,028 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-12-05T00:35:53,031 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-12-05T00:35:53,033 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-12-05T00:35:53,034 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-12-05T00:35:53,036 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-12-05T00:35:53,038 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-12-05T00:35:53,039 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-12-05T00:35:53,041 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-12-05T00:35:53,044 creating build/lib/sequana/multiqc 2023-12-05T00:35:53,045 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,047 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,049 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,051 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,052 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,054 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,057 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,059 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,060 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,063 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,065 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,067 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-12-05T00:35:53,070 creating build/lib/sequana/modules_report 2023-12-05T00:35:53,071 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,073 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,075 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,078 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,079 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,081 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,083 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,085 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,087 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,090 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,092 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,095 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,097 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,099 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,100 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,103 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,105 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,107 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,109 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,111 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,113 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-12-05T00:35:53,116 creating build/lib/sequana/enrichment 2023-12-05T00:35:53,117 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,119 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,121 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,123 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,124 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,126 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,129 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,131 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,133 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-12-05T00:35:53,135 creating build/lib/sequana/resources/css 2023-12-05T00:35:53,136 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-12-05T00:35:53,138 creating build/lib/sequana/resources/data 2023-12-05T00:35:53,139 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-12-05T00:35:53,142 creating build/lib/sequana/resources/templates 2023-12-05T00:35:53,143 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-12-05T00:35:53,145 creating build/lib/sequana/resources/js 2023-12-05T00:35:53,146 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-12-05T00:35:53,148 creating build/lib/sequana/resources/images 2023-12-05T00:35:53,148 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-12-05T00:35:53,151 creating build/lib/sequana/resources/testing 2023-12-05T00:35:53,152 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-12-05T00:35:53,154 creating build/lib/sequana/resources/doc 2023-12-05T00:35:53,155 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-12-05T00:35:53,157 creating build/lib/sequana/resources/examples 2023-12-05T00:35:53,158 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-12-05T00:35:53,159 creating build/lib/sequana/resources/snpeff 2023-12-05T00:35:53,160 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-12-05T00:35:53,162 creating build/lib/sequana/resources/canvas 2023-12-05T00:35:53,163 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-12-05T00:35:53,165 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-12-05T00:35:53,167 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-12-05T00:35:53,168 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-12-05T00:35:53,170 creating build/lib/sequana/resources/doc/rnaseq_0 2023-12-05T00:35:53,171 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-12-05T00:35:53,173 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-05T00:35:53,174 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-05T00:35:53,176 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-05T00:35:53,177 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-05T00:35:53,179 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-05T00:35:53,180 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-05T00:35:53,183 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-05T00:35:53,183 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-05T00:35:53,186 creating build/lib/sequana/scripts/main 2023-12-05T00:35:53,187 copying sequana/scripts/main/eco.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,189 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,191 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,193 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,195 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,197 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,198 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,200 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,203 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,205 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,207 copying sequana/scripts/main/g4hunter.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,209 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,211 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,213 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,216 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,217 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,219 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,221 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,223 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,225 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,227 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,229 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,230 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,232 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-12-05T00:35:53,234 creating build/lib/sequana/rules/SnpEff 2023-12-05T00:35:53,235 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2023-12-05T00:35:53,237 creating build/lib/sequana/rules/Pacbio 2023-12-05T00:35:53,238 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2023-12-05T00:35:53,240 creating build/lib/sequana/rules/picard-tools 2023-12-05T00:35:53,241 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2023-12-05T00:35:53,243 creating build/lib/sequana/rules/deeptools 2023-12-05T00:35:53,244 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2023-12-05T00:35:53,246 creating build/lib/sequana/rules/idr 2023-12-05T00:35:53,247 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2023-12-05T00:35:53,249 creating build/lib/sequana/rules/codecs 2023-12-05T00:35:53,250 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2023-12-05T00:35:53,409 copying sequana/Ld1S.fa -> build/lib/sequana 2023-12-05T00:35:53,952 copying sequana/rules/README.rst -> build/lib/sequana/rules 2023-12-05T00:35:53,954 creating build/lib/sequana/rules/samtools_sort 2023-12-05T00:35:53,955 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2023-12-05T00:35:53,957 creating build/lib/sequana/rules/miRNA_count_dynamic 2023-12-05T00:35:53,958 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2023-12-05T00:35:53,960 creating build/lib/sequana/rules/DupRadar 2023-12-05T00:35:53,961 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2023-12-05T00:35:53,963 creating build/lib/sequana/rules/salmon_index 2023-12-05T00:35:53,964 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2023-12-05T00:35:53,967 creating build/lib/sequana/rules/pacbio_quality 2023-12-05T00:35:53,967 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2023-12-05T00:35:53,970 creating build/lib/sequana/rules/prokka 2023-12-05T00:35:53,971 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2023-12-05T00:35:53,973 creating build/lib/sequana/rules/format_contigs 2023-12-05T00:35:53,974 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2023-12-05T00:35:53,976 creating build/lib/sequana/rules/bwa_bam_to_fastq 2023-12-05T00:35:53,977 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2023-12-05T00:35:53,979 creating build/lib/sequana/rules/freebayes_bcf_filter 2023-12-05T00:35:53,980 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2023-12-05T00:35:53,982 creating build/lib/sequana/rules/rnaseqc 2023-12-05T00:35:53,983 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2023-12-05T00:35:53,985 creating build/lib/sequana/rules/fastq_screen_report 2023-12-05T00:35:53,986 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2023-12-05T00:35:53,989 creating build/lib/sequana/rules/summary_pipeline 2023-12-05T00:35:53,989 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2023-12-05T00:35:53,992 creating build/lib/sequana/rules/igvtools 2023-12-05T00:35:53,993 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2023-12-05T00:35:53,995 creating build/lib/sequana/rules/fastq_sampling 2023-12-05T00:35:53,996 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2023-12-05T00:35:53,998 creating build/lib/sequana/rules/bed_to_gff 2023-12-05T00:35:53,999 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2023-12-05T00:35:54,001 creating build/lib/sequana/rules/salmon_mapping 2023-12-05T00:35:54,002 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2023-12-05T00:35:54,005 creating build/lib/sequana/rules/bamCoverage 2023-12-05T00:35:54,006 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2023-12-05T00:35:54,008 creating build/lib/sequana/rules/indel_realigner 2023-12-05T00:35:54,009 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2023-12-05T00:35:54,011 creating build/lib/sequana/rules/fastq_screen 2023-12-05T00:35:54,012 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2023-12-05T00:35:54,014 creating build/lib/sequana/rules/cutadapt 2023-12-05T00:35:54,015 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2023-12-05T00:35:54,018 creating build/lib/sequana/rules/spikes_counting 2023-12-05T00:35:54,019 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2023-12-05T00:35:54,021 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-12-05T00:35:54,022 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2023-12-05T00:35:54,024 creating build/lib/sequana/rules/extract_fasta_from_bed 2023-12-05T00:35:54,025 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2023-12-05T00:35:54,028 creating build/lib/sequana/rules/spades_get_fastq 2023-12-05T00:35:54,028 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2023-12-05T00:35:54,030 creating build/lib/sequana/rules/revcomp_rule 2023-12-05T00:35:54,031 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2023-12-05T00:35:54,033 creating build/lib/sequana/rules/bam_quality_filter 2023-12-05T00:35:54,034 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2023-12-05T00:35:54,036 creating build/lib/sequana/rules/kraken 2023-12-05T00:35:54,036 creating build/lib/sequana/rules/kraken/2.0 2023-12-05T00:35:54,037 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2023-12-05T00:35:54,040 creating build/lib/sequana/rules/kraken/1.1 2023-12-05T00:35:54,041 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2023-12-05T00:35:54,043 creating build/lib/sequana/rules/kraken/1.0 2023-12-05T00:35:54,044 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2023-12-05T00:35:54,046 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-12-05T00:35:54,047 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2023-12-05T00:35:54,050 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2023-12-05T00:35:54,051 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2023-12-05T00:35:54,053 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-12-05T00:35:54,054 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2023-12-05T00:35:54,056 creating build/lib/sequana/rules/picard-tools/reorderSam 2023-12-05T00:35:54,057 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2023-12-05T00:35:54,059 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-12-05T00:35:54,060 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-12-05T00:35:54,062 creating build/lib/sequana/rules/picard-tools/add_read_group 2023-12-05T00:35:54,063 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2023-12-05T00:35:54,066 creating build/lib/sequana/rules/deeptools/plotCoverage 2023-12-05T00:35:54,066 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2023-12-05T00:35:54,069 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-12-05T00:35:54,070 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2023-12-05T00:35:54,072 creating build/lib/sequana/rules/deeptools/multiBamSummary 2023-12-05T00:35:54,073 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2023-12-05T00:35:54,075 creating build/lib/sequana/rules/deeptools/plotCorrelation 2023-12-05T00:35:54,076 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2023-12-05T00:35:54,078 creating build/lib/sequana/rules/idr/union_peaks 2023-12-05T00:35:54,079 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2023-12-05T00:35:54,081 creating build/lib/sequana/rules/idr/metrics_peaks 2023-12-05T00:35:54,082 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2023-12-05T00:35:54,084 creating build/lib/sequana/rules/idr/compute_idr 2023-12-05T00:35:54,085 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2023-12-05T00:35:54,087 creating build/lib/sequana/rules/idr/stats_peakCalling 2023-12-05T00:35:54,088 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2023-12-05T00:35:54,090 creating build/lib/sequana/rules/idr/select_peaks 2023-12-05T00:35:54,091 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2023-12-05T00:35:54,093 creating build/lib/sequana/rules/idr/intersectionApproach 2023-12-05T00:35:54,094 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2023-12-05T00:35:54,096 creating build/lib/sequana/rules/idr/preIDR_dynamic 2023-12-05T00:35:54,097 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2023-12-05T00:35:54,100 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2023-12-05T00:35:54,101 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2023-12-05T00:35:54,103 creating build/lib/sequana/rules/codecs/gz_to_fastq 2023-12-05T00:35:54,103 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2023-12-05T00:35:54,105 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-12-05T00:35:54,106 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2023-12-05T00:35:54,108 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-12-05T00:35:54,109 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2023-12-05T00:35:54,112 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-12-05T00:35:54,112 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2023-12-05T00:35:54,115 creating build/lib/sequana/rules/codecs/fastq_to_gz 2023-12-05T00:35:54,115 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2023-12-05T00:35:54,117 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2023-12-05T00:35:54,118 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2023-12-05T00:35:54,120 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2023-12-05T00:35:54,121 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2023-12-05T00:35:54,124 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-12-05T00:35:54,125 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2023-12-05T00:35:54,127 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2023-12-05T00:35:54,128 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2023-12-05T00:35:54,130 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-12-05T00:35:54,130 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-12-05T00:35:54,132 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-12-05T00:35:54,134 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-12-05T00:35:54,135 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-12-05T00:35:54,137 creating build/lib/sequana/rules/SnpEff/snpeff 2023-12-05T00:35:54,138 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-12-05T00:35:54,139 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2023-12-05T00:35:54,141 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-12-05T00:35:54,142 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2023-12-05T00:35:54,144 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-12-05T00:35:54,147 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-05T00:35:54,149 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-12-05T00:35:54,152 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-12-05T00:35:54,156 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-05T00:35:54,159 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-12-05T00:35:54,161 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-12-05T00:35:54,163 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-12-05T00:35:54,165 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-12-05T00:35:54,168 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-05T00:35:54,172 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-12-05T00:35:54,183 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-12-05T00:35:54,193 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2023-12-05T00:35:54,195 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2023-12-05T00:35:54,197 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2023-12-05T00:35:54,199 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2023-12-05T00:35:54,202 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-05T00:35:54,206 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2023-12-05T00:35:54,208 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-12-05T00:35:54,211 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-12-05T00:35:54,214 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-12-05T00:35:54,216 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-12-05T00:35:54,219 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-12-05T00:35:54,221 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-12-05T00:35:54,224 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,227 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,230 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,233 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,237 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,239 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,243 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,246 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,252 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,255 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,258 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,262 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,268 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-12-05T00:35:54,270 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-12-05T00:35:54,272 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-12-05T00:35:54,276 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-12-05T00:35:54,279 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-12-05T00:35:54,282 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,284 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,286 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,288 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,290 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,292 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,294 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,302 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,304 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,307 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,308 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,311 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,312 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,320 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,338 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,340 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,342 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,344 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-12-05T00:35:54,346 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-12-05T00:35:54,348 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-12-05T00:35:54,351 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-12-05T00:35:54,354 copying sequana/resources/examples/test_kraken.out.summary -> build/lib/sequana/resources/examples 2023-12-05T00:35:54,356 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-12-05T00:35:54,360 copying sequana/scripts/main/enrichment.html -> build/lib/sequana/scripts/main 2023-12-05T00:35:54,418 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-05T00:35:54,419 !! 2023-12-05T00:35:54,421 ******************************************************************************** 2023-12-05T00:35:54,421 Please avoid running ``setup.py`` directly. 2023-12-05T00:35:54,422 Instead, use pypa/build, pypa/installer or other 2023-12-05T00:35:54,423 standards-based tools. 2023-12-05T00:35:54,424 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-05T00:35:54,425 ******************************************************************************** 2023-12-05T00:35:54,426 !! 2023-12-05T00:35:54,427 self.initialize_options() 2023-12-05T00:35:54,456 installing to build/bdist.linux-armv7l/wheel 2023-12-05T00:35:54,457 running install 2023-12-05T00:35:54,489 running install_lib 2023-12-05T00:35:54,514 creating build/bdist.linux-armv7l 2023-12-05T00:35:54,514 creating build/bdist.linux-armv7l/wheel 2023-12-05T00:35:54,517 creating build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,518 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,521 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,523 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,526 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,528 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,530 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,532 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,536 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,538 creating build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-05T00:35:54,538 copying build/lib/sequana/cython/setup.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-05T00:35:54,540 copying build/lib/sequana/cython/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-05T00:35:54,542 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,543 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,546 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,547 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,549 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,552 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,555 copying build/lib/sequana/atac.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,556 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,559 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,561 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,562 copying build/lib/sequana/gff3_eggnog.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,565 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,568 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-05T00:35:54,568 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-05T00:35:54,571 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-05T00:35:54,574 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-05T00:35:54,576 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,578 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,580 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,583 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,586 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,589 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-05T00:35:54,590 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,591 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,594 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,596 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,601 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,603 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,605 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-05T00:35:54,607 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,608 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,613 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,654 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,693 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,696 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,699 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,701 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,703 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,706 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,708 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,711 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,715 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,718 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,721 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-05T00:35:54,724 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,725 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,727 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,730 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,733 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,735 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,737 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-05T00:35:54,740 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,742 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,746 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,749 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,752 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,755 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,757 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,761 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,763 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,768 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,771 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,773 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,776 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,782 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,784 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-05T00:35:54,786 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,787 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,789 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,792 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,795 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,798 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-05T00:35:54,800 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,801 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,803 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,805 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,807 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,810 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,817 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,819 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,821 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,823 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,825 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,828 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,830 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,837 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,849 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,851 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,853 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,855 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,857 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,859 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-05T00:35:54,861 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-05T00:35:54,863 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-05T00:35:54,864 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-05T00:35:54,866 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-05T00:35:54,868 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-05T00:35:54,869 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-05T00:35:54,871 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-05T00:35:54,873 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-05T00:35:54,874 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-05T00:35:54,876 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-05T00:35:54,877 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-05T00:35:54,879 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-05T00:35:54,880 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-05T00:35:54,882 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-05T00:35:54,884 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,885 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,888 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,891 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,892 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,894 copying build/lib/sequana/resources/examples/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-05T00:35:54,897 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-05T00:35:54,898 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-05T00:35:54,901 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-05T00:35:54,903 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-05T00:35:54,904 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-05T00:35:54,906 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-05T00:35:54,907 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-05T00:35:54,909 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,911 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,913 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,915 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,917 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,919 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,922 copying build/lib/sequana/annotation.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,923 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,926 copying build/lib/sequana/mpileup.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,929 copying build/lib/sequana/diamond.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,931 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,934 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,937 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,939 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,941 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,944 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,947 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,950 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-05T00:35:54,951 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-05T00:35:54,954 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-05T00:35:54,957 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-05T00:35:54,958 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,961 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,964 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,967 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,969 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:54,972 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:54,973 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:54,975 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:54,978 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,978 copying build/lib/sequana/scripts/main/eco.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,980 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,982 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,985 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,987 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,989 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,991 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,993 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,995 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,997 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:54,999 copying build/lib/sequana/scripts/main/enrichment.html -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,003 copying build/lib/sequana/scripts/main/g4hunter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,005 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,019 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,021 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,024 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,026 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,028 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,030 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,032 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,034 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,036 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,038 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,040 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,042 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-05T00:35:55,044 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:55,046 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:55,049 copying build/lib/sequana/scripts/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:55,051 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-05T00:35:55,052 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,054 copying build/lib/sequana/Ld1S.fa -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,604 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,606 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,609 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,609 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,612 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,613 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,615 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,617 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,619 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,622 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-05T00:35:55,624 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,626 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,629 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,632 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,633 copying build/lib/sequana/kosak.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,635 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,638 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,641 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,644 creating build/bdist.linux-armv7l/wheel/sequana/rules 2023-12-05T00:35:55,645 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-12-05T00:35:55,646 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2023-12-05T00:35:55,648 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-12-05T00:35:55,649 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2023-12-05T00:35:55,652 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-12-05T00:35:55,652 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2023-12-05T00:35:55,655 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-12-05T00:35:55,656 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2023-12-05T00:35:55,658 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-12-05T00:35:55,659 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2023-12-05T00:35:55,662 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-12-05T00:35:55,663 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2023-12-05T00:35:55,666 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2023-12-05T00:35:55,667 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-12-05T00:35:55,668 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2023-12-05T00:35:55,671 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-12-05T00:35:55,671 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2023-12-05T00:35:55,674 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-12-05T00:35:55,675 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2023-12-05T00:35:55,677 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-12-05T00:35:55,678 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2023-12-05T00:35:55,682 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-12-05T00:35:55,683 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2023-12-05T00:35:55,685 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-12-05T00:35:55,686 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2023-12-05T00:35:55,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-12-05T00:35:55,689 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2023-12-05T00:35:55,691 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-12-05T00:35:55,692 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2023-12-05T00:35:55,695 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-12-05T00:35:55,696 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2023-12-05T00:35:55,698 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-12-05T00:35:55,702 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-12-05T00:35:55,703 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2023-12-05T00:35:55,706 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-12-05T00:35:55,707 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2023-12-05T00:35:55,709 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-12-05T00:35:55,711 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2023-12-05T00:35:55,713 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-12-05T00:35:55,715 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2023-12-05T00:35:55,717 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-12-05T00:35:55,718 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2023-12-05T00:35:55,721 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2023-12-05T00:35:55,722 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-12-05T00:35:55,723 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2023-12-05T00:35:55,726 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-12-05T00:35:55,728 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2023-12-05T00:35:55,730 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2023-12-05T00:35:55,733 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-12-05T00:35:55,734 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2023-12-05T00:35:55,736 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-12-05T00:35:55,737 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2023-12-05T00:35:55,739 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-12-05T00:35:55,740 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2023-12-05T00:35:55,742 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-12-05T00:35:55,743 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2023-12-05T00:35:55,746 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-12-05T00:35:55,747 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2023-12-05T00:35:55,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-12-05T00:35:55,751 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2023-12-05T00:35:55,754 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-12-05T00:35:55,755 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2023-12-05T00:35:55,758 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-12-05T00:35:55,759 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2023-12-05T00:35:55,762 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-12-05T00:35:55,763 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2023-12-05T00:35:55,766 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-12-05T00:35:55,767 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2023-12-05T00:35:55,770 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-12-05T00:35:55,771 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2023-12-05T00:35:55,774 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-12-05T00:35:55,775 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2023-12-05T00:35:55,777 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-12-05T00:35:55,778 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2023-12-05T00:35:55,781 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-12-05T00:35:55,782 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-12-05T00:35:55,783 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2023-12-05T00:35:55,786 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-12-05T00:35:55,787 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2023-12-05T00:35:55,790 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-12-05T00:35:55,790 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2023-12-05T00:35:55,793 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-12-05T00:35:55,794 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2023-12-05T00:35:55,796 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-12-05T00:35:55,797 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2023-12-05T00:35:55,800 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2023-12-05T00:35:55,802 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-12-05T00:35:55,804 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-12-05T00:35:55,805 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2023-12-05T00:35:55,808 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-12-05T00:35:55,809 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2023-12-05T00:35:55,813 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-12-05T00:35:55,814 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2023-12-05T00:35:55,816 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-12-05T00:35:55,817 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2023-12-05T00:35:55,819 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2023-12-05T00:35:55,821 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2023-12-05T00:35:55,824 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-12-05T00:35:55,825 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2023-12-05T00:35:55,828 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-12-05T00:35:55,830 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-12-05T00:35:55,831 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2023-12-05T00:35:55,834 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-12-05T00:35:55,836 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2023-12-05T00:35:55,839 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-12-05T00:35:55,840 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2023-12-05T00:35:55,843 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-12-05T00:35:55,844 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2023-12-05T00:35:55,847 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-12-05T00:35:55,848 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2023-12-05T00:35:55,851 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2023-12-05T00:35:55,853 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-12-05T00:35:55,854 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2023-12-05T00:35:55,857 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-12-05T00:35:55,858 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2023-12-05T00:35:55,862 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-12-05T00:35:55,863 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-12-05T00:35:55,864 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2023-12-05T00:35:55,867 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-12-05T00:35:55,868 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2023-12-05T00:35:55,871 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-12-05T00:35:55,872 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2023-12-05T00:35:55,875 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-12-05T00:35:55,876 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2023-12-05T00:35:55,879 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-12-05T00:35:55,880 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2023-12-05T00:35:55,885 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-12-05T00:35:55,886 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2023-12-05T00:35:55,889 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-12-05T00:35:55,890 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2023-12-05T00:35:55,897 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-12-05T00:35:55,899 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2023-12-05T00:35:55,904 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-12-05T00:35:55,905 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2023-12-05T00:35:55,911 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2023-12-05T00:35:55,953 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-12-05T00:35:55,954 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2023-12-05T00:35:55,956 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,959 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:55,963 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,964 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,966 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,968 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,971 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,973 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,975 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,978 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,980 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,982 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,984 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,986 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,988 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,990 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,992 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,994 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,996 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,998 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:55,999 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:56,002 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-05T00:35:56,004 copying build/lib/sequana/test.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,006 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,009 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,012 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,013 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,016 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,019 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,023 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,028 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,033 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,039 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,043 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,047 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,051 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,054 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,058 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,061 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-05T00:35:56,064 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,068 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,071 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,073 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,076 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,078 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,080 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,083 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,084 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,086 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,089 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,092 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,094 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,097 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,100 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,103 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,106 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,110 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,113 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,116 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,119 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,122 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,124 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,128 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,130 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,133 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,135 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,138 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,140 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-05T00:35:56,143 copying build/lib/sequana/G4hunter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,146 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,149 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,152 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,155 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-05T00:35:56,158 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,160 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,163 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,166 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,168 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,170 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,173 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,175 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,178 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,180 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-05T00:35:56,182 running install_egg_info 2023-12-05T00:35:56,249 running egg_info 2023-12-05T00:35:56,276 writing sequana.egg-info/PKG-INFO 2023-12-05T00:35:56,287 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-12-05T00:35:56,290 writing entry points to sequana.egg-info/entry_points.txt 2023-12-05T00:35:56,294 writing requirements to sequana.egg-info/requires.txt 2023-12-05T00:35:56,295 writing top-level names to sequana.egg-info/top_level.txt 2023-12-05T00:35:56,569 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-05T00:35:56,589 reading manifest template 'MANIFEST.in' 2023-12-05T00:35:56,592 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-05T00:35:56,594 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-05T00:35:57,248 warning: no files found matching 'test/requirements*txt' 2023-12-05T00:35:57,249 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-05T00:35:57,251 warning: no previously-included files matching '*' found under directory 'test' 2023-12-05T00:35:57,252 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-05T00:35:57,254 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-05T00:35:57,254 adding license file 'LICENSE' 2023-12-05T00:35:57,274 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-05T00:35:57,276 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.16.2-py3.11.egg-info 2023-12-05T00:35:57,291 running install_scripts 2023-12-05T00:35:57,321 creating build/bdist.linux-armv7l/wheel/sequana-0.16.2.dist-info/WHEEL 2023-12-05T00:35:57,323 creating '/tmp/pip-wheel-hloykwqz/sequana-0.16.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-05T00:35:57,326 adding 'sequana/G4hunter.py' 2023-12-05T00:36:13,995 adding 'sequana/Ld1S.fa' 2023-12-05T00:36:14,205 adding 'sequana/__init__.py' 2023-12-05T00:36:14,206 adding 'sequana/annotation.py' 2023-12-05T00:36:14,208 adding 'sequana/assembly.py' 2023-12-05T00:36:14,210 adding 'sequana/atac.py' 2023-12-05T00:36:14,217 adding 'sequana/bamtools.py' 2023-12-05T00:36:14,219 adding 'sequana/bed.py' 2023-12-05T00:36:14,228 adding 'sequana/bedtools.py' 2023-12-05T00:36:14,230 adding 'sequana/canu_scanner.py' 2023-12-05T00:36:14,232 adding 'sequana/cigar.py' 2023-12-05T00:36:14,234 adding 'sequana/cnv.py' 2023-12-05T00:36:14,235 adding 'sequana/codon.py' 2023-12-05T00:36:14,238 adding 'sequana/compare.py' 2023-12-05T00:36:14,240 adding 'sequana/contigs.py' 2023-12-05T00:36:14,242 adding 'sequana/coverage.py' 2023-12-05T00:36:14,244 adding 'sequana/cpg_islands.py' 2023-12-05T00:36:14,245 adding 'sequana/criteria.py' 2023-12-05T00:36:14,248 adding 'sequana/databases.py' 2023-12-05T00:36:14,249 adding 'sequana/datatools.py' 2023-12-05T00:36:14,251 adding 'sequana/demultiplex.py' 2023-12-05T00:36:14,253 adding 'sequana/diamond.py' 2023-12-05T00:36:14,254 adding 'sequana/errors.py' 2023-12-05T00:36:14,256 adding 'sequana/fasta.py' 2023-12-05T00:36:14,258 adding 'sequana/fasta_gff_correction.py' 2023-12-05T00:36:14,264 adding 'sequana/fastq.py' 2023-12-05T00:36:14,265 adding 'sequana/fastqc.py' 2023-12-05T00:36:14,268 adding 'sequana/featurecounts.py' 2023-12-05T00:36:14,269 adding 'sequana/find_motif.py' 2023-12-05T00:36:14,271 adding 'sequana/freebayes_bcf_filter.py' 2023-12-05T00:36:14,273 adding 'sequana/freebayes_vcf_filter.py' 2023-12-05T00:36:14,275 adding 'sequana/frip.py' 2023-12-05T00:36:14,277 adding 'sequana/genbank.py' 2023-12-05T00:36:14,280 adding 'sequana/gff3.py' 2023-12-05T00:36:14,283 adding 'sequana/gff3_eggnog.py' 2023-12-05T00:36:14,285 adding 'sequana/gtf_fixer.py' 2023-12-05T00:36:14,286 adding 'sequana/homer.py' 2023-12-05T00:36:14,288 adding 'sequana/idr.py' 2023-12-05T00:36:14,290 adding 'sequana/iem.py' 2023-12-05T00:36:14,293 adding 'sequana/isoseq.py' 2023-12-05T00:36:14,294 adding 'sequana/itol.py' 2023-12-05T00:36:14,296 adding 'sequana/iuapc.py' 2023-12-05T00:36:14,297 adding 'sequana/kegg.py' 2023-12-05T00:36:14,299 adding 'sequana/kmer.py' 2023-12-05T00:36:14,300 adding 'sequana/kosak.py' 2023-12-05T00:36:14,302 adding 'sequana/krona.py' 2023-12-05T00:36:14,304 adding 'sequana/laa.py' 2023-12-05T00:36:14,305 adding 'sequana/lazy.py' 2023-12-05T00:36:14,307 adding 'sequana/lazyimports.py' 2023-12-05T00:36:14,308 adding 'sequana/macs3.py' 2023-12-05T00:36:14,310 adding 'sequana/mgi.py' 2023-12-05T00:36:14,312 adding 'sequana/mh.py' 2023-12-05T00:36:14,313 adding 'sequana/misc.py' 2023-12-05T00:36:14,315 adding 'sequana/mixture.py' 2023-12-05T00:36:14,317 adding 'sequana/mpileup.py' 2023-12-05T00:36:14,322 adding 'sequana/pacbio.py' 2023-12-05T00:36:14,324 adding 'sequana/pacbio_amplicon.py' 2023-12-05T00:36:14,327 adding 'sequana/phantom.py' 2023-12-05T00:36:14,328 adding 'sequana/phred.py' 2023-12-05T00:36:14,330 adding 'sequana/protein.py' 2023-12-05T00:36:14,332 adding 'sequana/ribodesigner.py' 2023-12-05T00:36:14,338 adding 'sequana/rnadiff.py' 2023-12-05T00:36:14,340 adding 'sequana/running_median.py' 2023-12-05T00:36:14,342 adding 'sequana/salmon.py' 2023-12-05T00:36:14,346 adding 'sequana/sequence.py' 2023-12-05T00:36:14,348 adding 'sequana/sniffer.py' 2023-12-05T00:36:14,350 adding 'sequana/snpeff.py' 2023-12-05T00:36:14,352 adding 'sequana/stats.py' 2023-12-05T00:36:14,353 adding 'sequana/summary.py' 2023-12-05T00:36:14,356 adding 'sequana/taxonomy.py' 2023-12-05T00:36:14,357 adding 'sequana/test.py' 2023-12-05T00:36:14,360 adding 'sequana/tools.py' 2023-12-05T00:36:14,362 adding 'sequana/trf.py' 2023-12-05T00:36:14,364 adding 'sequana/vcf_filter.py' 2023-12-05T00:36:14,366 adding 'sequana/vcftools.py' 2023-12-05T00:36:14,367 adding 'sequana/vst.py' 2023-12-05T00:36:14,369 adding 'sequana/cython/__init__.py' 2023-12-05T00:36:14,370 adding 'sequana/cython/setup.py' 2023-12-05T00:36:14,372 adding 'sequana/enrichment/__init__.py' 2023-12-05T00:36:14,373 adding 'sequana/enrichment/gsea.py' 2023-12-05T00:36:14,377 adding 'sequana/enrichment/kegg.py' 2023-12-05T00:36:14,379 adding 'sequana/enrichment/mart.py' 2023-12-05T00:36:14,380 adding 'sequana/enrichment/ontology.py' 2023-12-05T00:36:14,383 adding 'sequana/enrichment/panther.py' 2023-12-05T00:36:14,385 adding 'sequana/enrichment/plot_go_terms.py' 2023-12-05T00:36:14,387 adding 'sequana/enrichment/quickgo.py' 2023-12-05T00:36:14,389 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-12-05T00:36:14,391 adding 'sequana/kraken/__init__.py' 2023-12-05T00:36:14,397 adding 'sequana/kraken/analysis.py' 2023-12-05T00:36:14,399 adding 'sequana/kraken/multikraken.py' 2023-12-05T00:36:14,400 adding 'sequana/modules_report/__init__.py' 2023-12-05T00:36:14,402 adding 'sequana/modules_report/bamqc.py' 2023-12-05T00:36:14,404 adding 'sequana/modules_report/base_module.py' 2023-12-05T00:36:14,405 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-12-05T00:36:14,408 adding 'sequana/modules_report/coverage.py' 2023-12-05T00:36:14,411 adding 'sequana/modules_report/cutadapt.py' 2023-12-05T00:36:14,413 adding 'sequana/modules_report/fastq_stats.py' 2023-12-05T00:36:14,415 adding 'sequana/modules_report/fastqc.py' 2023-12-05T00:36:14,416 adding 'sequana/modules_report/joint_calling.py' 2023-12-05T00:36:14,418 adding 'sequana/modules_report/kegg_enrichment.py' 2023-12-05T00:36:14,420 adding 'sequana/modules_report/kraken.py' 2023-12-05T00:36:14,423 adding 'sequana/modules_report/multi_summary.py' 2023-12-05T00:36:14,425 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-12-05T00:36:14,427 adding 'sequana/modules_report/panther_enrichment.py' 2023-12-05T00:36:14,429 adding 'sequana/modules_report/phix.py' 2023-12-05T00:36:14,430 adding 'sequana/modules_report/quast.py' 2023-12-05T00:36:14,433 adding 'sequana/modules_report/rnadiff.py' 2023-12-05T00:36:14,436 adding 'sequana/modules_report/summary.py' 2023-12-05T00:36:14,437 adding 'sequana/modules_report/trf.py' 2023-12-05T00:36:14,439 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-12-05T00:36:14,441 adding 'sequana/modules_report/variant_calling.py' 2023-12-05T00:36:14,443 adding 'sequana/multiqc/__init__.py' 2023-12-05T00:36:14,445 adding 'sequana/multiqc/bamtools_stats.py' 2023-12-05T00:36:14,447 adding 'sequana/multiqc/config.py' 2023-12-05T00:36:14,448 adding 'sequana/multiqc/coverage.py' 2023-12-05T00:36:14,450 adding 'sequana/multiqc/isoseq.py' 2023-12-05T00:36:14,452 adding 'sequana/multiqc/isoseq_qc.py' 2023-12-05T00:36:14,454 adding 'sequana/multiqc/kraken.py' 2023-12-05T00:36:14,456 adding 'sequana/multiqc/laa.py' 2023-12-05T00:36:14,458 adding 'sequana/multiqc/multiqc_config.yaml' 2023-12-05T00:36:14,459 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-12-05T00:36:14,461 adding 'sequana/multiqc/pacbio_qc.py' 2023-12-05T00:36:14,463 adding 'sequana/multiqc/plots.py' 2023-12-05T00:36:14,465 adding 'sequana/multiqc/quality_control.py' 2023-12-05T00:36:14,467 adding 'sequana/plots/__init__.py' 2023-12-05T00:36:14,469 adding 'sequana/plots/canvasjs_base.py' 2023-12-05T00:36:14,471 adding 'sequana/plots/canvasjs_linegraph.py' 2023-12-05T00:36:14,472 adding 'sequana/resources/__init__.py' 2023-12-05T00:36:14,474 adding 'sequana/resources/canvas/__init__.py' 2023-12-05T00:36:14,475 adding 'sequana/resources/canvas/bar.py' 2023-12-05T00:36:14,477 adding 'sequana/resources/css/__init__.py' 2023-12-05T00:36:14,487 adding 'sequana/resources/css/bootstrap.min.css' 2023-12-05T00:36:14,489 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-12-05T00:36:14,491 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-12-05T00:36:14,493 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-12-05T00:36:14,495 adding 'sequana/resources/css/report.css' 2023-12-05T00:36:14,508 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-12-05T00:36:14,522 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-12-05T00:36:14,524 adding 'sequana/resources/data/README.rst' 2023-12-05T00:36:14,525 adding 'sequana/resources/data/__init__.py' 2023-12-05T00:36:14,582 adding 'sequana/resources/data/kegg.csv' 2023-12-05T00:36:14,592 adding 'sequana/resources/data/measles.fa' 2023-12-05T00:36:14,594 adding 'sequana/resources/data/measles.fa.amb' 2023-12-05T00:36:14,595 adding 'sequana/resources/data/measles.fa.ann' 2023-12-05T00:36:14,598 adding 'sequana/resources/data/measles.fa.bwt' 2023-12-05T00:36:14,600 adding 'sequana/resources/data/measles.fa.pac' 2023-12-05T00:36:14,602 adding 'sequana/resources/data/measles.fa.sa' 2023-12-05T00:36:14,604 adding 'sequana/resources/data/panther.csv' 2023-12-05T00:36:14,607 adding 'sequana/resources/data/phiX174.fa' 2023-12-05T00:36:14,665 adding 'sequana/resources/data/virus.bed' 2023-12-05T00:36:14,668 adding 'sequana/resources/doc/__init__.py' 2023-12-05T00:36:14,670 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-12-05T00:36:14,671 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-12-05T00:36:14,673 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-12-05T00:36:14,675 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-12-05T00:36:14,676 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-12-05T00:36:14,678 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-12-05T00:36:14,680 adding 'sequana/resources/examples/README.rst' 2023-12-05T00:36:14,681 adding 'sequana/resources/examples/__init__.py' 2023-12-05T00:36:14,684 adding 'sequana/resources/examples/test.fastq.gz' 2023-12-05T00:36:14,686 adding 'sequana/resources/examples/test_kraken.out' 2023-12-05T00:36:14,687 adding 'sequana/resources/examples/test_kraken.out.summary' 2023-12-05T00:36:14,692 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-12-05T00:36:14,694 adding 'sequana/resources/images/__init__.py' 2023-12-05T00:36:14,703 adding 'sequana/resources/images/logo_256x256.png' 2023-12-05T00:36:14,705 adding 'sequana/resources/images/no_data.jpg' 2023-12-05T00:36:14,707 adding 'sequana/resources/images/no_data.png' 2023-12-05T00:36:14,708 adding 'sequana/resources/js/__init__.py' 2023-12-05T00:36:14,713 adding 'sequana/resources/js/bootstrap.min.js' 2023-12-05T00:36:14,716 adding 'sequana/resources/js/buttons.html5.min.js' 2023-12-05T00:36:14,717 adding 'sequana/resources/js/buttons.print.min.js' 2023-12-05T00:36:14,739 adding 'sequana/resources/js/canvasjs.min.js' 2023-12-05T00:36:14,743 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-12-05T00:36:14,784 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-12-05T00:36:14,797 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-12-05T00:36:14,810 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-12-05T00:36:14,822 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-12-05T00:36:14,835 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-12-05T00:36:14,837 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-12-05T00:36:14,838 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-12-05T00:36:14,841 adding 'sequana/resources/js/papaparse.min.js' 2023-12-05T00:36:14,842 adding 'sequana/resources/snpeff/__init__.py' 2023-12-05T00:36:14,844 adding 'sequana/resources/snpeff/snpEff.config' 2023-12-05T00:36:14,846 adding 'sequana/resources/templates/__init__.py' 2023-12-05T00:36:14,848 adding 'sequana/resources/templates/base.html' 2023-12-05T00:36:14,849 adding 'sequana/resources/templates/joint_calling.html' 2023-12-05T00:36:14,851 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-12-05T00:36:14,853 adding 'sequana/resources/templates/standard.html' 2023-12-05T00:36:14,854 adding 'sequana/resources/templates/vcf_diff.html' 2023-12-05T00:36:14,856 adding 'sequana/resources/testing/README.rst' 2023-12-05T00:36:14,858 adding 'sequana/resources/testing/__init__.py' 2023-12-05T00:36:14,859 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-12-05T00:36:14,867 adding 'sequana/resources/testing/test.fasta' 2023-12-05T00:36:14,880 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-12-05T00:36:14,884 adding 'sequana/resources/testing/test_blast_local.xml' 2023-12-05T00:36:14,917 adding 'sequana/resources/testing/test_coverage.csv' 2023-12-05T00:36:14,920 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-12-05T00:36:14,922 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-12-05T00:36:14,923 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-12-05T00:36:14,924 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-12-05T00:36:14,926 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-12-05T00:36:14,927 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-12-05T00:36:14,928 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-12-05T00:36:14,930 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-12-05T00:36:14,931 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-12-05T00:36:14,933 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-12-05T00:36:15,151 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-12-05T00:36:15,156 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-12-05T00:36:15,158 adding 'sequana/rules/README.rst' 2023-12-05T00:36:15,159 adding 'sequana/rules/__init__.py' 2023-12-05T00:36:15,161 adding 'sequana/rules/DupRadar/DupRadar.rules' 2023-12-05T00:36:15,162 adding 'sequana/rules/Pacbio/__init__.py' 2023-12-05T00:36:15,163 adding 'sequana/rules/SnpEff/__init__.py' 2023-12-05T00:36:15,165 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2023-12-05T00:36:15,167 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2023-12-05T00:36:15,170 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2023-12-05T00:36:15,172 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2023-12-05T00:36:15,174 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2023-12-05T00:36:15,175 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2023-12-05T00:36:15,177 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2023-12-05T00:36:15,179 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2023-12-05T00:36:15,181 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2023-12-05T00:36:15,183 adding 'sequana/rules/codecs/__init__.py' 2023-12-05T00:36:15,184 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2023-12-05T00:36:15,186 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2023-12-05T00:36:15,188 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2023-12-05T00:36:15,190 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2023-12-05T00:36:15,192 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2023-12-05T00:36:15,193 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2023-12-05T00:36:15,195 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2023-12-05T00:36:15,197 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2023-12-05T00:36:15,198 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2023-12-05T00:36:15,200 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2023-12-05T00:36:15,202 adding 'sequana/rules/cutadapt/cutadapt.rules' 2023-12-05T00:36:15,203 adding 'sequana/rules/deeptools/__init__.py' 2023-12-05T00:36:15,205 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2023-12-05T00:36:15,207 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2023-12-05T00:36:15,208 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2023-12-05T00:36:15,210 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2023-12-05T00:36:15,212 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2023-12-05T00:36:15,214 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2023-12-05T00:36:15,216 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2023-12-05T00:36:15,218 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2023-12-05T00:36:15,220 adding 'sequana/rules/format_contigs/format_contigs.rules' 2023-12-05T00:36:15,222 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2023-12-05T00:36:15,224 adding 'sequana/rules/idr/__init__.py' 2023-12-05T00:36:15,226 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2023-12-05T00:36:15,227 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2023-12-05T00:36:15,230 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2023-12-05T00:36:15,232 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2023-12-05T00:36:15,234 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2023-12-05T00:36:15,236 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2023-12-05T00:36:15,238 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2023-12-05T00:36:15,240 adding 'sequana/rules/igvtools/igvtools.rules' 2023-12-05T00:36:15,242 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2023-12-05T00:36:15,244 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2023-12-05T00:36:15,246 adding 'sequana/rules/kraken/1.0/kraken.rules' 2023-12-05T00:36:15,248 adding 'sequana/rules/kraken/1.1/kraken.rules' 2023-12-05T00:36:15,251 adding 'sequana/rules/kraken/2.0/kraken.rules' 2023-12-05T00:36:15,252 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2023-12-05T00:36:15,254 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2023-12-05T00:36:15,256 adding 'sequana/rules/picard-tools/__init__.py' 2023-12-05T00:36:15,258 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2023-12-05T00:36:15,260 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2023-12-05T00:36:15,262 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2023-12-05T00:36:15,264 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2023-12-05T00:36:15,266 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2023-12-05T00:36:15,268 adding 'sequana/rules/prokka/prokka.rules' 2023-12-05T00:36:15,270 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2023-12-05T00:36:15,272 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2023-12-05T00:36:15,274 adding 'sequana/rules/salmon_index/salmon_index.rules' 2023-12-05T00:36:15,276 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2023-12-05T00:36:15,278 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2023-12-05T00:36:15,280 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2023-12-05T00:36:15,282 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2023-12-05T00:36:15,284 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2023-12-05T00:36:15,286 adding 'sequana/scripts/__init__.py' 2023-12-05T00:36:15,287 adding 'sequana/scripts/common.py' 2023-12-05T00:36:15,290 adding 'sequana/scripts/coverage.py' 2023-12-05T00:36:15,292 adding 'sequana/scripts/substractor.py' 2023-12-05T00:36:15,294 adding 'sequana/scripts/taxonomy.py' 2023-12-05T00:36:15,296 adding 'sequana/scripts/utils.py' 2023-12-05T00:36:15,298 adding 'sequana/scripts/main/__init__.py' 2023-12-05T00:36:15,300 adding 'sequana/scripts/main/biomart.py' 2023-12-05T00:36:15,301 adding 'sequana/scripts/main/eco.py' 2023-12-05T00:36:15,305 adding 'sequana/scripts/main/enrichment.html' 2023-12-05T00:36:15,308 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-12-05T00:36:15,309 adding 'sequana/scripts/main/enrichment_panther.py' 2023-12-05T00:36:15,311 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-12-05T00:36:15,313 adding 'sequana/scripts/main/fasta.py' 2023-12-05T00:36:15,315 adding 'sequana/scripts/main/fastq.py' 2023-12-05T00:36:15,316 adding 'sequana/scripts/main/feature_count.py' 2023-12-05T00:36:15,318 adding 'sequana/scripts/main/g4hunter.py' 2023-12-05T00:36:15,319 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-12-05T00:36:15,321 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-12-05T00:36:15,323 adding 'sequana/scripts/main/gtf_fixer.py' 2023-12-05T00:36:15,325 adding 'sequana/scripts/main/lane_merging.py' 2023-12-05T00:36:15,326 adding 'sequana/scripts/main/main.py' 2023-12-05T00:36:15,328 adding 'sequana/scripts/main/mapping.py' 2023-12-05T00:36:15,330 adding 'sequana/scripts/main/ribodesigner.py' 2023-12-05T00:36:15,332 adding 'sequana/scripts/main/rnadiff.py' 2023-12-05T00:36:15,334 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-12-05T00:36:15,336 adding 'sequana/scripts/main/salmon.py' 2023-12-05T00:36:15,337 adding 'sequana/scripts/main/samplesheet.py' 2023-12-05T00:36:15,339 adding 'sequana/scripts/main/summary.py' 2023-12-05T00:36:15,340 adding 'sequana/scripts/main/taxonomy.py' 2023-12-05T00:36:15,343 adding 'sequana/scripts/main/variants_comparison.py' 2023-12-05T00:36:15,344 adding 'sequana/utils/__init__.py' 2023-12-05T00:36:15,346 adding 'sequana/utils/config.py' 2023-12-05T00:36:15,348 adding 'sequana/utils/datatables_js.py' 2023-12-05T00:36:15,350 adding 'sequana/utils/df2html.py' 2023-12-05T00:36:15,352 adding 'sequana/utils/pandas.py' 2023-12-05T00:36:15,354 adding 'sequana/utils/singleton.py' 2023-12-05T00:36:15,355 adding 'sequana/utils/tree.py' 2023-12-05T00:36:15,357 adding 'sequana/viz/__init__.py' 2023-12-05T00:36:15,359 adding 'sequana/viz/anova.py' 2023-12-05T00:36:15,361 adding 'sequana/viz/boxplot.py' 2023-12-05T00:36:15,363 adding 'sequana/viz/clusterisation.py' 2023-12-05T00:36:15,365 adding 'sequana/viz/core.py' 2023-12-05T00:36:15,368 adding 'sequana/viz/corrplot.py' 2023-12-05T00:36:15,371 adding 'sequana/viz/dendogram.py' 2023-12-05T00:36:15,374 adding 'sequana/viz/heatmap.py' 2023-12-05T00:36:15,376 adding 'sequana/viz/hinton.py' 2023-12-05T00:36:15,377 adding 'sequana/viz/hist2d.py' 2023-12-05T00:36:15,378 adding 'sequana/viz/imshow.py' 2023-12-05T00:36:15,380 adding 'sequana/viz/isomap.py' 2023-12-05T00:36:15,382 adding 'sequana/viz/linkage.py' 2023-12-05T00:36:15,383 adding 'sequana/viz/mds.py' 2023-12-05T00:36:15,385 adding 'sequana/viz/pca.py' 2023-12-05T00:36:15,386 adding 'sequana/viz/plotly.py' 2023-12-05T00:36:15,388 adding 'sequana/viz/scatter.py' 2023-12-05T00:36:15,390 adding 'sequana/viz/venn.py' 2023-12-05T00:36:15,391 adding 'sequana/viz/volcano.py' 2023-12-05T00:36:15,394 adding 'sequana-0.16.2.dist-info/LICENSE' 2023-12-05T00:36:15,396 adding 'sequana-0.16.2.dist-info/METADATA' 2023-12-05T00:36:15,397 adding 'sequana-0.16.2.dist-info/WHEEL' 2023-12-05T00:36:15,398 adding 'sequana-0.16.2.dist-info/entry_points.txt' 2023-12-05T00:36:15,399 adding 'sequana-0.16.2.dist-info/top_level.txt' 2023-12-05T00:36:15,404 adding 'sequana-0.16.2.dist-info/RECORD' 2023-12-05T00:36:15,668 removing build/bdist.linux-armv7l/wheel 2023-12-05T00:36:15,937 Building wheel for sequana (setup.py): finished with status 'done' 2023-12-05T00:36:16,055 Created wheel for sequana: filename=sequana-0.16.2-py3-none-any.whl size=11749635 sha256=b0e22cbb99c84afc413819e17e09b5a6e7df381d9936bd09d63064de7379e627 2023-12-05T00:36:16,057 Stored in directory: /tmp/pip-ephem-wheel-cache-4skdkq1k/wheels/92/25/1f/46bfebe93237bcb5c807c3f80d78e55077eedf8056ddc77c9f 2023-12-05T00:36:16,085 Successfully built sequana 2023-12-05T00:36:16,403 Removed build tracker: '/tmp/pip-build-tracker-7azwrtep'