2023-12-06T18:19:38,525 Created temporary directory: /tmp/pip-build-tracker-xfpr2yhc 2023-12-06T18:19:38,527 Initialized build tracking at /tmp/pip-build-tracker-xfpr2yhc 2023-12-06T18:19:38,527 Created build tracker: /tmp/pip-build-tracker-xfpr2yhc 2023-12-06T18:19:38,527 Entered build tracker: /tmp/pip-build-tracker-xfpr2yhc 2023-12-06T18:19:38,528 Created temporary directory: /tmp/pip-wheel-j5n1l96u 2023-12-06T18:19:38,531 Created temporary directory: /tmp/pip-ephem-wheel-cache-gluic6u6 2023-12-06T18:19:38,553 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-06T18:19:38,556 2 location(s) to search for versions of sequana: 2023-12-06T18:19:38,556 * https://pypi.org/simple/sequana/ 2023-12-06T18:19:38,556 * https://www.piwheels.org/simple/sequana/ 2023-12-06T18:19:38,557 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-12-06T18:19:38,558 Getting page https://pypi.org/simple/sequana/ 2023-12-06T18:19:38,559 Found index url https://pypi.org/simple/ 2023-12-06T18:19:38,773 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-12-06T18:19:38,788 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-12-06T18:19:38,789 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-12-06T18:19:38,790 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-12-06T18:19:38,791 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.1 2023-12-06T18:19:38,791 Found link https://files.pythonhosted.org/packages/b2/eb/7cc9779f1bc2326e773b4aadcdbb887ee159d5577a264391849c4bf30675/sequana-0.1.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.2 2023-12-06T18:19:38,792 Found link https://files.pythonhosted.org/packages/a3/f2/ddd73eb6c5c5fdeb14929d10eb9da3ce0ba199de287e37e18ba9fda2fff0/sequana-0.1.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.4 2023-12-06T18:19:38,793 Found link https://files.pythonhosted.org/packages/c9/d3/5d43f18eba7cf6d8ffe14b211e78055cb11dc4ab2029ae6a8bf038016dc5/sequana-0.1.5.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.5 2023-12-06T18:19:38,793 Found link https://files.pythonhosted.org/packages/06/76/278f62063ff252e99e14d32fe8d312f8c4b6009e17057ba2412914b01e33/sequana-0.1.6.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.6 2023-12-06T18:19:38,794 Found link https://files.pythonhosted.org/packages/e2/68/6d81996d2150c703936789e5f763758f1abd852cb70a305d27a72f4ad07e/sequana-0.1.7.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.7 2023-12-06T18:19:38,795 Found link https://files.pythonhosted.org/packages/7d/07/16a171ad4d3b7b16f84b0daf209fe08c69049d3b2a999b9f033efc489b50/sequana-0.1.8.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.8 2023-12-06T18:19:38,796 Found link https://files.pythonhosted.org/packages/35/e4/866a0e92729208de63257f5cf28fcb8a55f17f7782625c0b76c25bc6e36d/sequana-0.1.9.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.9 2023-12-06T18:19:38,796 Found link https://files.pythonhosted.org/packages/41/e3/fb07d2f2af1ecb9723985d41e4bb5381b2ce629def70de356d01b4073bc2/sequana-0.1.10.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.10 2023-12-06T18:19:38,797 Found link https://files.pythonhosted.org/packages/3e/f9/018c06c7a186369e322ffba87f7464ee15512382c0667742b7f2f1916e56/sequana-0.1.11.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.11 2023-12-06T18:19:38,798 Found link https://files.pythonhosted.org/packages/57/f5/2c96c8ea3fdc5c514a119a9d07c5e200af33912ee359899b46f9f8ec16a9/sequana-0.1.12.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.12 2023-12-06T18:19:38,799 Found link https://files.pythonhosted.org/packages/d0/45/b4ca98abb0fd8ce106d881ef50ab5780c367f90c3dfd76520f96ce03f6d4/sequana-0.1.13.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.13 2023-12-06T18:19:38,800 Found link https://files.pythonhosted.org/packages/61/13/efcace55134bc652bc1ab30182602551f401973f8aa9f62b311cee14478e/sequana-0.1.14.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.14 2023-12-06T18:19:38,800 Found link https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.15 2023-12-06T18:19:38,801 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.16 2023-12-06T18:19:38,801 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2023-12-06T18:19:38,802 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.18 2023-12-06T18:19:38,802 Found link https://files.pythonhosted.org/packages/ea/f3/97de8d22730a166e2f6c67ad89dac248e5ff904d2cb5dbe95921425a6ca9/sequana-0.1.19.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.19 2023-12-06T18:19:38,803 Found link https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2023-12-06T18:19:38,804 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2023-12-06T18:19:38,804 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2023-12-06T18:19:38,805 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2023-12-06T18:19:38,806 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2023-12-06T18:19:38,806 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2023-12-06T18:19:38,807 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2023-12-06T18:19:38,808 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-12-06T18:19:38,808 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-12-06T18:19:38,809 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-12-06T18:19:38,810 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-12-06T18:19:38,811 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2023-12-06T18:19:38,812 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2023-12-06T18:19:38,812 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2023-12-06T18:19:38,813 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2023-12-06T18:19:38,813 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2023-12-06T18:19:38,814 Found link https://files.pythonhosted.org/packages/0b/4b/d9ffbc2b826fc1c9bd8059fb44e4965ad05668650dd9ff495e21a57b1fd0/sequana-0.6.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.4 2023-12-06T18:19:38,814 Found link https://files.pythonhosted.org/packages/c3/1d/8c938ea8d9ce30775f9e54d2c52be5febfdea65acb1f4ea4e1d0d0a76e22/sequana-0.6.5.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post1 2023-12-06T18:19:38,815 Found link https://files.pythonhosted.org/packages/da/5e/2859c6bfd78c5abb2bbb72a432e052678829511a166524da97c37d776c9a/sequana-0.6.5.post2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post2 2023-12-06T18:19:38,816 Found link https://files.pythonhosted.org/packages/74/dd/db06102f885ecc1ac569b3d0bf40798402cfe2d0ed0162c363580aff9979/sequana-0.6.5.post3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.5.post3 2023-12-06T18:19:38,816 Found link https://files.pythonhosted.org/packages/b8/5a/0e69348ba763eeed3686ee64c13b31b3b418c3d365488dc225ad7063bd87/sequana-0.7.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.0 2023-12-06T18:19:38,817 Found link https://files.pythonhosted.org/packages/3e/6f/642ff17496d724c79e63165f22215043153fdeca7272e7c2bb2d0f7d00b7/sequana-0.7.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.7.1 2023-12-06T18:19:38,818 Found link https://files.pythonhosted.org/packages/5a/0b/12b137f2edaaabd10323ac0a66af7b8aa2cf2af2c8a5b18e2d1467644eb2/sequana-0.8.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.8.0 2023-12-06T18:19:38,818 Found link 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https://files.pythonhosted.org/packages/0f/65/ebc06c97950f19d32900b54c15be8adc9c7325af10ccffb0f8b31740d6d8/sequana-0.15.4.tar.gz (from https://pypi.org/simple/sequana/), version: 0.15.4 2023-12-06T18:19:38,846 Found link https://files.pythonhosted.org/packages/38/8d/c3b11c7cb71d6e6aea0ff528c07ad849799ee7f840686edd60b5e60d4f15/sequana-0.16.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.16.0 2023-12-06T18:19:38,847 Found link https://files.pythonhosted.org/packages/74/79/fdc25c74b88dd1eb9577d6c892f4a19a7ceeaad2ee9327fcd99e24ffb347/sequana-0.16.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.16.1 2023-12-06T18:19:38,848 Found link https://files.pythonhosted.org/packages/9a/c7/8503ef6117a466d778212e65b96c225133667050af2b2651bf8827af7b87/sequana-0.16.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.16.2 2023-12-06T18:19:38,849 Found link https://files.pythonhosted.org/packages/e6/ff/fa439db5139144e79b9883f4bf1202f1dead4c19cf86e220c9f9cb2cb3d8/sequana-0.16.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.16.3 2023-12-06T18:19:38,849 Fetching project page and analyzing links: https://www.piwheels.org/simple/sequana/ 2023-12-06T18:19:38,850 Getting page https://www.piwheels.org/simple/sequana/ 2023-12-06T18:19:38,851 Found index url https://www.piwheels.org/simple/ 2023-12-06T18:19:39,007 Fetched page https://www.piwheels.org/simple/sequana/ as text/html 2023-12-06T18:19:39,028 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.16.2-py3-none-any.whl#sha256=b0e22cbb99c84afc413819e17e09b5a6e7df381d9936bd09d63064de7379e627 (from https://www.piwheels.org/simple/sequana/) 2023-12-06T18:19:39,029 Skipping link: No binaries permitted for sequana: 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2023-12-06T18:19:39,075 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-12-06T18:19:39,076 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-12-06T18:19:39,077 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-12-06T18:19:39,077 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-12-06T18:19:39,078 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-12-06T18:19:39,079 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-12-06T18:19:39,109 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-12-06T18:19:39,129 Collecting sequana==0.16.3 2023-12-06T18:19:39,132 Created temporary directory: /tmp/pip-unpack-sctnny76 2023-12-06T18:19:39,354 Downloading sequana-0.16.3.tar.gz (1.6 MB) 2023-12-06T18:19:42,010 Added sequana==0.16.3 from https://files.pythonhosted.org/packages/e6/ff/fa439db5139144e79b9883f4bf1202f1dead4c19cf86e220c9f9cb2cb3d8/sequana-0.16.3.tar.gz to build tracker '/tmp/pip-build-tracker-xfpr2yhc' 2023-12-06T18:19:42,013 Running setup.py (path:/tmp/pip-wheel-j5n1l96u/sequana_abfa08c393a245499e17d6b51a60f7f9/setup.py) egg_info for package sequana 2023-12-06T18:19:42,015 Created temporary directory: /tmp/pip-pip-egg-info-6g9ay7ah 2023-12-06T18:19:42,016 Preparing metadata (setup.py): started 2023-12-06T18:19:42,018 Running command python setup.py egg_info 2023-12-06T18:19:42,890 running egg_info 2023-12-06T18:19:42,891 creating /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info 2023-12-06T18:19:42,916 writing /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/PKG-INFO 2023-12-06T18:19:42,927 writing dependency_links to /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/dependency_links.txt 2023-12-06T18:19:42,929 writing entry points to /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/entry_points.txt 2023-12-06T18:19:42,934 writing requirements to /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/requires.txt 2023-12-06T18:19:42,935 writing top-level names to /tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/top_level.txt 2023-12-06T18:19:42,936 writing manifest file '/tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/SOURCES.txt' 2023-12-06T18:19:43,133 reading manifest file '/tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/SOURCES.txt' 2023-12-06T18:19:43,135 reading manifest template 'MANIFEST.in' 2023-12-06T18:19:43,137 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-06T18:19:43,138 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-06T18:19:43,229 warning: no files found matching '*rules' under directory '*' 2023-12-06T18:19:43,230 warning: no files found matching 'test/requirements*txt' 2023-12-06T18:19:43,231 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-06T18:19:43,232 warning: no previously-included files matching '*' found under directory 'test' 2023-12-06T18:19:43,233 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-06T18:19:43,234 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-06T18:19:43,234 adding license file 'LICENSE' 2023-12-06T18:19:43,243 writing manifest file '/tmp/pip-pip-egg-info-6g9ay7ah/sequana.egg-info/SOURCES.txt' 2023-12-06T18:19:43,342 Preparing metadata (setup.py): finished with status 'done' 2023-12-06T18:19:43,347 Source in /tmp/pip-wheel-j5n1l96u/sequana_abfa08c393a245499e17d6b51a60f7f9 has version 0.16.3, which satisfies requirement sequana==0.16.3 from https://files.pythonhosted.org/packages/e6/ff/fa439db5139144e79b9883f4bf1202f1dead4c19cf86e220c9f9cb2cb3d8/sequana-0.16.3.tar.gz 2023-12-06T18:19:43,348 Removed sequana==0.16.3 from https://files.pythonhosted.org/packages/e6/ff/fa439db5139144e79b9883f4bf1202f1dead4c19cf86e220c9f9cb2cb3d8/sequana-0.16.3.tar.gz from build tracker '/tmp/pip-build-tracker-xfpr2yhc' 2023-12-06T18:19:43,356 Created temporary directory: /tmp/pip-unpack-6plv5nxi 2023-12-06T18:19:43,357 Created temporary directory: /tmp/pip-unpack-vxcgmcuq 2023-12-06T18:19:43,449 Building wheels for collected packages: sequana 2023-12-06T18:19:43,453 Created temporary directory: /tmp/pip-wheel-prdi9tqy 2023-12-06T18:19:43,454 Building wheel for sequana (setup.py): started 2023-12-06T18:19:43,455 Destination directory: /tmp/pip-wheel-prdi9tqy 2023-12-06T18:19:43,456 Running command python setup.py bdist_wheel 2023-12-06T18:19:44,304 running bdist_wheel 2023-12-06T18:19:44,438 running build 2023-12-06T18:19:44,438 running build_py 2023-12-06T18:19:44,468 creating build 2023-12-06T18:19:44,469 creating build/lib 2023-12-06T18:19:44,469 creating build/lib/sequana 2023-12-06T18:19:44,471 copying sequana/summary.py -> build/lib/sequana 2023-12-06T18:19:44,473 copying sequana/taxonomy.py -> build/lib/sequana 2023-12-06T18:19:44,475 copying sequana/cnv.py -> build/lib/sequana 2023-12-06T18:19:44,477 copying sequana/stats.py -> build/lib/sequana 2023-12-06T18:19:44,479 copying sequana/cpg_islands.py -> build/lib/sequana 2023-12-06T18:19:44,481 copying sequana/demultiplex.py -> build/lib/sequana 2023-12-06T18:19:44,483 copying sequana/bedtools.py -> build/lib/sequana 2023-12-06T18:19:44,487 copying sequana/lazyimports.py -> build/lib/sequana 2023-12-06T18:19:44,488 copying sequana/iem.py -> build/lib/sequana 2023-12-06T18:19:44,491 copying sequana/__init__.py -> build/lib/sequana 2023-12-06T18:19:44,492 copying sequana/protein.py -> build/lib/sequana 2023-12-06T18:19:44,494 copying sequana/mixture.py -> build/lib/sequana 2023-12-06T18:19:44,496 copying sequana/canu_scanner.py -> build/lib/sequana 2023-12-06T18:19:44,498 copying sequana/kmer.py -> build/lib/sequana 2023-12-06T18:19:44,500 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-12-06T18:19:44,501 copying sequana/vcf_filter.py -> build/lib/sequana 2023-12-06T18:19:44,504 copying sequana/contigs.py -> build/lib/sequana 2023-12-06T18:19:44,506 copying sequana/vst.py -> build/lib/sequana 2023-12-06T18:19:44,508 copying sequana/idr.py -> build/lib/sequana 2023-12-06T18:19:44,510 copying sequana/snpeff.py -> build/lib/sequana 2023-12-06T18:19:44,512 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-12-06T18:19:44,514 copying sequana/bed.py -> build/lib/sequana 2023-12-06T18:19:44,516 copying sequana/tools.py -> build/lib/sequana 2023-12-06T18:19:44,518 copying sequana/find_motif.py -> build/lib/sequana 2023-12-06T18:19:44,521 copying sequana/frip.py -> build/lib/sequana 2023-12-06T18:19:44,522 copying sequana/databases.py -> build/lib/sequana 2023-12-06T18:19:44,524 copying sequana/compare.py -> build/lib/sequana 2023-12-06T18:19:44,527 copying sequana/trf.py -> build/lib/sequana 2023-12-06T18:19:44,529 copying sequana/phantom.py -> build/lib/sequana 2023-12-06T18:19:44,531 copying sequana/fastq.py -> build/lib/sequana 2023-12-06T18:19:44,534 copying sequana/fastqc.py -> build/lib/sequana 2023-12-06T18:19:44,536 copying sequana/rnadiff.py -> build/lib/sequana 2023-12-06T18:19:44,539 copying sequana/misc.py -> build/lib/sequana 2023-12-06T18:19:44,541 copying sequana/datatools.py -> build/lib/sequana 2023-12-06T18:19:44,543 copying sequana/featurecounts.py -> build/lib/sequana 2023-12-06T18:19:44,545 copying sequana/sequence.py -> build/lib/sequana 2023-12-06T18:19:44,548 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-12-06T18:19:44,550 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-12-06T18:19:44,552 copying sequana/cigar.py -> build/lib/sequana 2023-12-06T18:19:44,554 copying sequana/pacbio.py -> build/lib/sequana 2023-12-06T18:19:44,557 copying sequana/gff3.py -> build/lib/sequana 2023-12-06T18:19:44,560 copying sequana/mgi.py -> build/lib/sequana 2023-12-06T18:19:44,561 copying sequana/kegg.py -> build/lib/sequana 2023-12-06T18:19:44,563 copying sequana/codon.py -> build/lib/sequana 2023-12-06T18:19:44,565 copying sequana/homer.py -> build/lib/sequana 2023-12-06T18:19:44,567 copying sequana/criteria.py -> build/lib/sequana 2023-12-06T18:19:44,569 copying sequana/genbank.py -> build/lib/sequana 2023-12-06T18:19:44,571 copying sequana/itol.py -> build/lib/sequana 2023-12-06T18:19:44,574 copying sequana/errors.py -> build/lib/sequana 2023-12-06T18:19:44,575 copying sequana/laa.py -> build/lib/sequana 2023-12-06T18:19:44,577 copying sequana/annotation.py -> build/lib/sequana 2023-12-06T18:19:44,579 copying sequana/bamtools.py -> build/lib/sequana 2023-12-06T18:19:44,582 copying sequana/macs3.py -> build/lib/sequana 2023-12-06T18:19:44,584 copying sequana/sniffer.py -> build/lib/sequana 2023-12-06T18:19:44,586 copying sequana/coverage.py -> build/lib/sequana 2023-12-06T18:19:44,588 copying sequana/mpileup.py -> build/lib/sequana 2023-12-06T18:19:44,590 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-12-06T18:19:44,593 copying sequana/isoseq.py -> build/lib/sequana 2023-12-06T18:19:44,595 copying sequana/fasta.py -> build/lib/sequana 2023-12-06T18:19:44,598 copying sequana/vcftools.py -> build/lib/sequana 2023-12-06T18:19:44,600 copying sequana/mh.py -> build/lib/sequana 2023-12-06T18:19:44,602 copying sequana/phred.py -> build/lib/sequana 2023-12-06T18:19:44,605 copying sequana/salmon.py -> build/lib/sequana 2023-12-06T18:19:44,607 copying sequana/lazy.py -> build/lib/sequana 2023-12-06T18:19:44,608 copying sequana/running_median.py -> build/lib/sequana 2023-12-06T18:19:44,610 copying sequana/iuapc.py -> build/lib/sequana 2023-12-06T18:19:44,612 copying sequana/krona.py -> build/lib/sequana 2023-12-06T18:19:44,614 copying sequana/G4hunter.py -> build/lib/sequana 2023-12-06T18:19:44,616 copying sequana/assembly.py -> build/lib/sequana 2023-12-06T18:19:44,618 copying sequana/ribodesigner.py -> build/lib/sequana 2023-12-06T18:19:44,621 creating build/lib/sequana/utils 2023-12-06T18:19:44,622 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-12-06T18:19:44,623 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-12-06T18:19:44,625 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-12-06T18:19:44,627 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-12-06T18:19:44,628 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-12-06T18:19:44,630 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-12-06T18:19:44,632 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-12-06T18:19:44,635 creating build/lib/sequana/kraken 2023-12-06T18:19:44,635 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-12-06T18:19:44,637 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-12-06T18:19:44,639 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-12-06T18:19:44,642 creating build/lib/sequana/cython 2023-12-06T18:19:44,643 copying sequana/cython/__init__.py -> build/lib/sequana/cython 2023-12-06T18:19:44,645 copying sequana/cython/setup.py -> build/lib/sequana/cython 2023-12-06T18:19:44,647 creating build/lib/sequana/multiqc 2023-12-06T18:19:44,648 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,650 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,652 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,654 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,656 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,658 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,660 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,662 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,664 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,666 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,668 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,670 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-12-06T18:19:44,673 creating build/lib/sequana/enrichment 2023-12-06T18:19:44,674 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,676 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,678 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,680 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,681 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,684 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,686 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,689 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,690 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-12-06T18:19:44,693 creating build/lib/sequana/scripts 2023-12-06T18:19:44,694 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,697 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,699 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,700 copying sequana/scripts/utils.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,702 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,703 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-12-06T18:19:44,707 creating build/lib/sequana/viz 2023-12-06T18:19:44,708 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-12-06T18:19:44,709 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-12-06T18:19:44,711 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-12-06T18:19:44,713 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-12-06T18:19:44,715 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-12-06T18:19:44,717 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-12-06T18:19:44,719 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-12-06T18:19:44,721 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-12-06T18:19:44,723 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-12-06T18:19:44,724 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-12-06T18:19:44,726 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-12-06T18:19:44,728 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-12-06T18:19:44,730 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-12-06T18:19:44,732 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-12-06T18:19:44,734 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-12-06T18:19:44,735 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-12-06T18:19:44,737 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-12-06T18:19:44,739 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-12-06T18:19:44,741 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-12-06T18:19:44,743 creating build/lib/sequana/resources 2023-12-06T18:19:44,744 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-12-06T18:19:44,746 creating build/lib/sequana/plots 2023-12-06T18:19:44,747 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-12-06T18:19:44,749 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-12-06T18:19:44,751 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-12-06T18:19:44,753 creating build/lib/sequana/modules_report 2023-12-06T18:19:44,754 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,757 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,759 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,761 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,763 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,765 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,767 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,769 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,771 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,773 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,775 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,777 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,779 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,781 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,784 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,785 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,787 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,789 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,791 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,793 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,795 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-12-06T18:19:44,798 creating build/lib/sequana/scripts/main 2023-12-06T18:19:44,799 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,801 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,803 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,805 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,806 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,808 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,809 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,811 copying sequana/scripts/main/g4hunter.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,813 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,815 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,817 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,818 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,821 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,822 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,824 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,826 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,828 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,830 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,832 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,834 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,835 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,837 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,839 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-12-06T18:19:44,841 creating build/lib/sequana/resources/data 2023-12-06T18:19:44,842 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-12-06T18:19:44,845 creating build/lib/sequana/resources/testing 2023-12-06T18:19:44,846 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-12-06T18:19:44,848 creating build/lib/sequana/resources/templates 2023-12-06T18:19:44,849 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-12-06T18:19:44,851 creating build/lib/sequana/resources/snpeff 2023-12-06T18:19:44,852 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-12-06T18:19:44,854 creating build/lib/sequana/resources/canvas 2023-12-06T18:19:44,855 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-12-06T18:19:44,857 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-12-06T18:19:44,859 creating build/lib/sequana/resources/examples 2023-12-06T18:19:44,859 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-12-06T18:19:44,861 creating build/lib/sequana/resources/css 2023-12-06T18:19:44,862 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-12-06T18:19:44,864 creating build/lib/sequana/resources/images 2023-12-06T18:19:44,865 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-12-06T18:19:44,867 creating build/lib/sequana/resources/doc 2023-12-06T18:19:44,867 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-12-06T18:19:44,869 creating build/lib/sequana/resources/js 2023-12-06T18:19:44,870 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-12-06T18:19:44,872 creating build/lib/sequana/resources/doc/rnaseq_0 2023-12-06T18:19:44,872 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-12-06T18:19:44,874 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-12-06T18:19:44,875 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-12-06T18:19:44,877 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-06T18:19:44,878 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-06T18:19:44,880 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-06T18:19:44,880 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-06T18:19:44,882 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-06T18:19:44,883 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-06T18:19:44,885 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-06T18:19:44,886 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-06T18:19:44,981 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-12-06T18:19:44,983 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-12-06T18:19:44,986 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-12-06T18:19:44,989 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-12-06T18:19:44,991 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-12-06T18:19:45,000 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-06T18:19:45,005 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-06T18:19:45,009 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-12-06T18:19:45,017 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-12-06T18:19:45,020 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,022 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,024 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,031 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,039 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,041 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,043 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,045 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,047 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,049 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,051 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,053 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,055 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,068 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,070 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,073 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,075 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,077 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-12-06T18:19:45,079 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-12-06T18:19:45,081 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-12-06T18:19:45,083 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-12-06T18:19:45,085 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-12-06T18:19:45,087 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-12-06T18:19:45,090 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-12-06T18:19:45,092 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-12-06T18:19:45,094 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-12-06T18:19:45,097 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-12-06T18:19:45,100 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-12-06T18:19:45,102 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-06T18:19:45,105 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-12-06T18:19:45,109 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-12-06T18:19:45,111 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-06T18:19:45,114 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-12-06T18:19:45,117 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-12-06T18:19:45,121 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-12-06T18:19:45,123 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-12-06T18:19:45,126 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,130 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,135 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,138 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,146 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,150 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,153 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,155 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,159 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,162 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,164 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,170 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,172 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-12-06T18:19:45,214 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-06T18:19:45,214 !! 2023-12-06T18:19:45,215 ******************************************************************************** 2023-12-06T18:19:45,216 Please avoid running ``setup.py`` directly. 2023-12-06T18:19:45,216 Instead, use pypa/build, pypa/installer or other 2023-12-06T18:19:45,217 standards-based tools. 2023-12-06T18:19:45,218 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-06T18:19:45,218 ******************************************************************************** 2023-12-06T18:19:45,219 !! 2023-12-06T18:19:45,220 self.initialize_options() 2023-12-06T18:19:45,240 installing to build/bdist.linux-armv7l/wheel 2023-12-06T18:19:45,240 running install 2023-12-06T18:19:45,263 running install_lib 2023-12-06T18:19:45,288 creating build/bdist.linux-armv7l 2023-12-06T18:19:45,289 creating build/bdist.linux-armv7l/wheel 2023-12-06T18:19:45,291 creating build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,292 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,295 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,297 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,299 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,301 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,302 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,304 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,306 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,307 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,309 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,311 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,313 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-06T18:19:45,315 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,317 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,319 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,322 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,324 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,327 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,328 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,330 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-06T18:19:45,331 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-06T18:19:45,332 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-06T18:19:45,335 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-06T18:19:45,337 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,339 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,342 creating build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-06T18:19:45,343 copying build/lib/sequana/cython/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-06T18:19:45,344 copying build/lib/sequana/cython/setup.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-06T18:19:45,346 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,347 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,349 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,352 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,354 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,356 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,358 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,360 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,361 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,363 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,365 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,367 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,369 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,371 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,373 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,375 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,377 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,379 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,381 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,383 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,385 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-06T18:19:45,387 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,390 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,392 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,394 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,396 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,398 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,401 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,403 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,405 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,408 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,409 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,411 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,413 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,414 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,416 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,418 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,420 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,423 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,424 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-06T18:19:45,427 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,429 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,431 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,434 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,436 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,438 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,440 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,443 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,445 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,446 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,449 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,451 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,453 copying build/lib/sequana/scripts/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,455 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,456 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-06T18:19:45,460 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,460 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,463 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,465 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,466 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,468 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,470 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,472 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,473 copying build/lib/sequana/scripts/main/g4hunter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,475 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,476 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,478 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,480 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,482 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,483 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,485 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,487 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,489 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,491 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,493 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,495 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,497 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,499 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,501 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-06T18:19:45,503 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,505 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,507 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,510 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,512 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,514 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,516 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,518 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,519 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,522 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,524 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,526 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,528 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,530 copying build/lib/sequana/annotation.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,531 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,534 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,537 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,538 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,541 copying build/lib/sequana/mpileup.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,542 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,545 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,547 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,548 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,550 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,552 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,554 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,556 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,558 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,560 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,562 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,564 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,566 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,567 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,569 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,571 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,573 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,575 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,577 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,579 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,581 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,583 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-06T18:19:45,585 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,587 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,589 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,592 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-06T18:19:45,593 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,594 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,602 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,604 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,606 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,611 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,614 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,620 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,623 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,632 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-06T18:19:45,635 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,636 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,648 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,659 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,662 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,663 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,665 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,667 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,669 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,672 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,674 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,676 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,678 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,680 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,682 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,702 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,704 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,707 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,709 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,710 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-06T18:19:45,712 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-06T18:19:45,714 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,715 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,716 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,718 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,720 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,722 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,724 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-06T18:19:45,726 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-06T18:19:45,727 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-06T18:19:45,728 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-06T18:19:45,731 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-06T18:19:45,732 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-06T18:19:45,734 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-06T18:19:45,736 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-06T18:19:45,736 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-06T18:19:45,739 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-06T18:19:45,740 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-06T18:19:45,742 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-06T18:19:45,745 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,745 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,748 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,749 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,751 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,755 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,757 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-06T18:19:45,760 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,761 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,763 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,765 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,768 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,771 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-06T18:19:45,773 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-06T18:19:45,774 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-06T18:19:45,776 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-06T18:19:45,777 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-06T18:19:45,779 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-06T18:19:45,780 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-06T18:19:45,782 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-06T18:19:45,783 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-06T18:19:45,785 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-06T18:19:45,786 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-06T18:19:45,787 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-06T18:19:45,788 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-06T18:19:45,790 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-06T18:19:45,791 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-06T18:19:45,793 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,794 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,797 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,801 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,803 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,809 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,811 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,814 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,817 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,819 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,822 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,825 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,827 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,832 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,835 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-06T18:19:45,837 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-06T18:19:45,838 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-06T18:19:45,840 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-06T18:19:45,842 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-06T18:19:45,844 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,846 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,847 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,850 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,852 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,854 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,855 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,858 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,860 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,862 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,864 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,866 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,868 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,870 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,872 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,874 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,877 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,878 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,880 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,883 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,885 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,887 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,889 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-06T18:19:45,892 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,894 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,896 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,898 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,900 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,902 copying build/lib/sequana/G4hunter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,904 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,906 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-06T18:19:45,909 running install_egg_info 2023-12-06T18:19:45,939 running egg_info 2023-12-06T18:19:45,965 writing sequana.egg-info/PKG-INFO 2023-12-06T18:19:45,975 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-12-06T18:19:45,978 writing entry points to sequana.egg-info/entry_points.txt 2023-12-06T18:19:45,982 writing requirements to sequana.egg-info/requires.txt 2023-12-06T18:19:45,984 writing top-level names to sequana.egg-info/top_level.txt 2023-12-06T18:19:46,105 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-06T18:19:46,112 reading manifest template 'MANIFEST.in' 2023-12-06T18:19:46,115 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-06T18:19:46,116 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-06T18:19:46,388 warning: no files found matching '*rules' under directory '*' 2023-12-06T18:19:46,389 warning: no files found matching 'test/requirements*txt' 2023-12-06T18:19:46,391 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-06T18:19:46,392 warning: no previously-included files matching '*' found under directory 'test' 2023-12-06T18:19:46,393 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-06T18:19:46,394 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-06T18:19:46,394 adding license file 'LICENSE' 2023-12-06T18:19:46,406 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-06T18:19:46,408 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.16.3-py3.11.egg-info 2023-12-06T18:19:46,421 running install_scripts 2023-12-06T18:19:46,450 creating build/bdist.linux-armv7l/wheel/sequana-0.16.3.dist-info/WHEEL 2023-12-06T18:19:46,453 creating '/tmp/pip-wheel-prdi9tqy/sequana-0.16.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-06T18:19:46,455 adding 'sequana/G4hunter.py' 2023-12-06T18:19:46,457 adding 'sequana/__init__.py' 2023-12-06T18:19:46,458 adding 'sequana/annotation.py' 2023-12-06T18:19:46,460 adding 'sequana/assembly.py' 2023-12-06T18:19:46,468 adding 'sequana/bamtools.py' 2023-12-06T18:19:46,470 adding 'sequana/bed.py' 2023-12-06T18:19:46,479 adding 'sequana/bedtools.py' 2023-12-06T18:19:46,481 adding 'sequana/canu_scanner.py' 2023-12-06T18:19:46,483 adding 'sequana/cigar.py' 2023-12-06T18:19:46,484 adding 'sequana/cnv.py' 2023-12-06T18:19:46,485 adding 'sequana/codon.py' 2023-12-06T18:19:46,488 adding 'sequana/compare.py' 2023-12-06T18:19:46,490 adding 'sequana/contigs.py' 2023-12-06T18:19:46,492 adding 'sequana/coverage.py' 2023-12-06T18:19:46,493 adding 'sequana/cpg_islands.py' 2023-12-06T18:19:46,495 adding 'sequana/criteria.py' 2023-12-06T18:19:46,497 adding 'sequana/databases.py' 2023-12-06T18:19:46,498 adding 'sequana/datatools.py' 2023-12-06T18:19:46,500 adding 'sequana/demultiplex.py' 2023-12-06T18:19:46,501 adding 'sequana/errors.py' 2023-12-06T18:19:46,503 adding 'sequana/fasta.py' 2023-12-06T18:19:46,506 adding 'sequana/fasta_gff_correction.py' 2023-12-06T18:19:46,511 adding 'sequana/fastq.py' 2023-12-06T18:19:46,512 adding 'sequana/fastqc.py' 2023-12-06T18:19:46,515 adding 'sequana/featurecounts.py' 2023-12-06T18:19:46,517 adding 'sequana/find_motif.py' 2023-12-06T18:19:46,518 adding 'sequana/freebayes_bcf_filter.py' 2023-12-06T18:19:46,520 adding 'sequana/freebayes_vcf_filter.py' 2023-12-06T18:19:46,522 adding 'sequana/frip.py' 2023-12-06T18:19:46,523 adding 'sequana/genbank.py' 2023-12-06T18:19:46,526 adding 'sequana/gff3.py' 2023-12-06T18:19:46,528 adding 'sequana/gtf_fixer.py' 2023-12-06T18:19:46,529 adding 'sequana/homer.py' 2023-12-06T18:19:46,531 adding 'sequana/idr.py' 2023-12-06T18:19:46,533 adding 'sequana/iem.py' 2023-12-06T18:19:46,536 adding 'sequana/isoseq.py' 2023-12-06T18:19:46,537 adding 'sequana/itol.py' 2023-12-06T18:19:46,539 adding 'sequana/iuapc.py' 2023-12-06T18:19:46,540 adding 'sequana/kegg.py' 2023-12-06T18:19:46,541 adding 'sequana/kmer.py' 2023-12-06T18:19:46,543 adding 'sequana/krona.py' 2023-12-06T18:19:46,545 adding 'sequana/laa.py' 2023-12-06T18:19:46,546 adding 'sequana/lazy.py' 2023-12-06T18:19:46,547 adding 'sequana/lazyimports.py' 2023-12-06T18:19:46,549 adding 'sequana/macs3.py' 2023-12-06T18:19:46,551 adding 'sequana/mgi.py' 2023-12-06T18:19:46,552 adding 'sequana/mh.py' 2023-12-06T18:19:46,553 adding 'sequana/misc.py' 2023-12-06T18:19:46,555 adding 'sequana/mixture.py' 2023-12-06T18:19:46,557 adding 'sequana/mpileup.py' 2023-12-06T18:19:46,561 adding 'sequana/pacbio.py' 2023-12-06T18:19:46,563 adding 'sequana/pacbio_amplicon.py' 2023-12-06T18:19:46,566 adding 'sequana/phantom.py' 2023-12-06T18:19:46,567 adding 'sequana/phred.py' 2023-12-06T18:19:46,568 adding 'sequana/protein.py' 2023-12-06T18:19:46,570 adding 'sequana/ribodesigner.py' 2023-12-06T18:19:46,576 adding 'sequana/rnadiff.py' 2023-12-06T18:19:46,578 adding 'sequana/running_median.py' 2023-12-06T18:19:46,580 adding 'sequana/salmon.py' 2023-12-06T18:19:46,583 adding 'sequana/sequence.py' 2023-12-06T18:19:46,585 adding 'sequana/sniffer.py' 2023-12-06T18:19:46,587 adding 'sequana/snpeff.py' 2023-12-06T18:19:46,588 adding 'sequana/stats.py' 2023-12-06T18:19:46,590 adding 'sequana/summary.py' 2023-12-06T18:19:46,592 adding 'sequana/taxonomy.py' 2023-12-06T18:19:46,594 adding 'sequana/tools.py' 2023-12-06T18:19:46,596 adding 'sequana/trf.py' 2023-12-06T18:19:46,598 adding 'sequana/vcf_filter.py' 2023-12-06T18:19:46,600 adding 'sequana/vcftools.py' 2023-12-06T18:19:46,601 adding 'sequana/vst.py' 2023-12-06T18:19:46,602 adding 'sequana/cython/__init__.py' 2023-12-06T18:19:46,603 adding 'sequana/cython/setup.py' 2023-12-06T18:19:46,605 adding 'sequana/enrichment/__init__.py' 2023-12-06T18:19:46,606 adding 'sequana/enrichment/gsea.py' 2023-12-06T18:19:46,610 adding 'sequana/enrichment/kegg.py' 2023-12-06T18:19:46,611 adding 'sequana/enrichment/mart.py' 2023-12-06T18:19:46,613 adding 'sequana/enrichment/ontology.py' 2023-12-06T18:19:46,615 adding 'sequana/enrichment/panther.py' 2023-12-06T18:19:46,617 adding 'sequana/enrichment/plot_go_terms.py' 2023-12-06T18:19:46,618 adding 'sequana/enrichment/quickgo.py' 2023-12-06T18:19:46,620 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-12-06T18:19:46,622 adding 'sequana/kraken/__init__.py' 2023-12-06T18:19:46,628 adding 'sequana/kraken/analysis.py' 2023-12-06T18:19:46,630 adding 'sequana/kraken/multikraken.py' 2023-12-06T18:19:46,631 adding 'sequana/modules_report/__init__.py' 2023-12-06T18:19:46,632 adding 'sequana/modules_report/bamqc.py' 2023-12-06T18:19:46,634 adding 'sequana/modules_report/base_module.py' 2023-12-06T18:19:46,636 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-12-06T18:19:46,639 adding 'sequana/modules_report/coverage.py' 2023-12-06T18:19:46,641 adding 'sequana/modules_report/cutadapt.py' 2023-12-06T18:19:46,643 adding 'sequana/modules_report/fastq_stats.py' 2023-12-06T18:19:46,644 adding 'sequana/modules_report/fastqc.py' 2023-12-06T18:19:46,646 adding 'sequana/modules_report/joint_calling.py' 2023-12-06T18:19:46,647 adding 'sequana/modules_report/kegg_enrichment.py' 2023-12-06T18:19:46,649 adding 'sequana/modules_report/kraken.py' 2023-12-06T18:19:46,651 adding 'sequana/modules_report/multi_summary.py' 2023-12-06T18:19:46,653 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-12-06T18:19:46,655 adding 'sequana/modules_report/panther_enrichment.py' 2023-12-06T18:19:46,656 adding 'sequana/modules_report/phix.py' 2023-12-06T18:19:46,658 adding 'sequana/modules_report/quast.py' 2023-12-06T18:19:46,660 adding 'sequana/modules_report/rnadiff.py' 2023-12-06T18:19:46,663 adding 'sequana/modules_report/summary.py' 2023-12-06T18:19:46,664 adding 'sequana/modules_report/trf.py' 2023-12-06T18:19:46,666 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-12-06T18:19:46,667 adding 'sequana/modules_report/variant_calling.py' 2023-12-06T18:19:46,669 adding 'sequana/multiqc/__init__.py' 2023-12-06T18:19:46,671 adding 'sequana/multiqc/bamtools_stats.py' 2023-12-06T18:19:46,672 adding 'sequana/multiqc/config.py' 2023-12-06T18:19:46,673 adding 'sequana/multiqc/coverage.py' 2023-12-06T18:19:46,675 adding 'sequana/multiqc/isoseq.py' 2023-12-06T18:19:46,677 adding 'sequana/multiqc/isoseq_qc.py' 2023-12-06T18:19:46,678 adding 'sequana/multiqc/kraken.py' 2023-12-06T18:19:46,679 adding 'sequana/multiqc/laa.py' 2023-12-06T18:19:46,681 adding 'sequana/multiqc/multiqc_config.yaml' 2023-12-06T18:19:46,682 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-12-06T18:19:46,684 adding 'sequana/multiqc/pacbio_qc.py' 2023-12-06T18:19:46,685 adding 'sequana/multiqc/plots.py' 2023-12-06T18:19:46,686 adding 'sequana/multiqc/quality_control.py' 2023-12-06T18:19:46,688 adding 'sequana/plots/__init__.py' 2023-12-06T18:19:46,689 adding 'sequana/plots/canvasjs_base.py' 2023-12-06T18:19:46,691 adding 'sequana/plots/canvasjs_linegraph.py' 2023-12-06T18:19:46,692 adding 'sequana/resources/__init__.py' 2023-12-06T18:19:46,693 adding 'sequana/resources/canvas/__init__.py' 2023-12-06T18:19:46,694 adding 'sequana/resources/canvas/bar.py' 2023-12-06T18:19:46,696 adding 'sequana/resources/css/__init__.py' 2023-12-06T18:19:46,705 adding 'sequana/resources/css/bootstrap.min.css' 2023-12-06T18:19:46,708 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-12-06T18:19:46,709 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-12-06T18:19:46,711 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-12-06T18:19:46,712 adding 'sequana/resources/css/report.css' 2023-12-06T18:19:46,725 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-12-06T18:19:46,739 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-12-06T18:19:46,741 adding 'sequana/resources/data/README.rst' 2023-12-06T18:19:46,742 adding 'sequana/resources/data/__init__.py' 2023-12-06T18:19:46,800 adding 'sequana/resources/data/kegg.csv' 2023-12-06T18:19:46,810 adding 'sequana/resources/data/measles.fa' 2023-12-06T18:19:46,812 adding 'sequana/resources/data/panther.csv' 2023-12-06T18:19:46,814 adding 'sequana/resources/data/phiX174.fa' 2023-12-06T18:19:46,873 adding 'sequana/resources/data/virus.bed' 2023-12-06T18:19:46,876 adding 'sequana/resources/doc/__init__.py' 2023-12-06T18:19:46,878 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-12-06T18:19:46,879 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-12-06T18:19:46,880 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-12-06T18:19:46,881 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-12-06T18:19:46,882 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-12-06T18:19:46,884 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-12-06T18:19:46,885 adding 'sequana/resources/examples/README.rst' 2023-12-06T18:19:46,886 adding 'sequana/resources/examples/__init__.py' 2023-12-06T18:19:46,889 adding 'sequana/resources/examples/test.fastq.gz' 2023-12-06T18:19:46,891 adding 'sequana/resources/examples/test_kraken.out' 2023-12-06T18:19:46,896 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-12-06T18:19:46,897 adding 'sequana/resources/images/__init__.py' 2023-12-06T18:19:46,906 adding 'sequana/resources/images/logo_256x256.png' 2023-12-06T18:19:46,908 adding 'sequana/resources/images/no_data.jpg' 2023-12-06T18:19:46,910 adding 'sequana/resources/images/no_data.png' 2023-12-06T18:19:46,911 adding 'sequana/resources/js/__init__.py' 2023-12-06T18:19:46,916 adding 'sequana/resources/js/bootstrap.min.js' 2023-12-06T18:19:46,918 adding 'sequana/resources/js/buttons.html5.min.js' 2023-12-06T18:19:46,920 adding 'sequana/resources/js/buttons.print.min.js' 2023-12-06T18:19:46,942 adding 'sequana/resources/js/canvasjs.min.js' 2023-12-06T18:19:46,946 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-12-06T18:19:46,986 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-12-06T18:19:47,000 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-12-06T18:19:47,013 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-12-06T18:19:47,026 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-12-06T18:19:47,037 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-12-06T18:19:47,039 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-12-06T18:19:47,040 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-12-06T18:19:47,042 adding 'sequana/resources/js/papaparse.min.js' 2023-12-06T18:19:47,044 adding 'sequana/resources/snpeff/__init__.py' 2023-12-06T18:19:47,045 adding 'sequana/resources/snpeff/snpEff.config' 2023-12-06T18:19:47,047 adding 'sequana/resources/templates/__init__.py' 2023-12-06T18:19:47,048 adding 'sequana/resources/templates/base.html' 2023-12-06T18:19:47,049 adding 'sequana/resources/templates/joint_calling.html' 2023-12-06T18:19:47,051 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-12-06T18:19:47,052 adding 'sequana/resources/templates/standard.html' 2023-12-06T18:19:47,054 adding 'sequana/resources/templates/vcf_diff.html' 2023-12-06T18:19:47,055 adding 'sequana/resources/testing/README.rst' 2023-12-06T18:19:47,056 adding 'sequana/resources/testing/__init__.py' 2023-12-06T18:19:47,058 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-12-06T18:19:47,065 adding 'sequana/resources/testing/test.fasta' 2023-12-06T18:19:47,079 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-12-06T18:19:47,083 adding 'sequana/resources/testing/test_blast_local.xml' 2023-12-06T18:19:47,116 adding 'sequana/resources/testing/test_coverage.csv' 2023-12-06T18:19:47,119 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-12-06T18:19:47,120 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-12-06T18:19:47,121 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-12-06T18:19:47,122 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-12-06T18:19:47,123 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-12-06T18:19:47,124 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-12-06T18:19:47,126 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-12-06T18:19:47,127 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-12-06T18:19:47,128 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-12-06T18:19:47,129 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-12-06T18:19:47,351 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-12-06T18:19:47,356 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-12-06T18:19:47,358 adding 'sequana/scripts/__init__.py' 2023-12-06T18:19:47,359 adding 'sequana/scripts/common.py' 2023-12-06T18:19:47,361 adding 'sequana/scripts/coverage.py' 2023-12-06T18:19:47,363 adding 'sequana/scripts/substractor.py' 2023-12-06T18:19:47,365 adding 'sequana/scripts/taxonomy.py' 2023-12-06T18:19:47,366 adding 'sequana/scripts/utils.py' 2023-12-06T18:19:47,368 adding 'sequana/scripts/main/__init__.py' 2023-12-06T18:19:47,369 adding 'sequana/scripts/main/biomart.py' 2023-12-06T18:19:47,371 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-12-06T18:19:47,373 adding 'sequana/scripts/main/enrichment_panther.py' 2023-12-06T18:19:47,374 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-12-06T18:19:47,376 adding 'sequana/scripts/main/fasta.py' 2023-12-06T18:19:47,377 adding 'sequana/scripts/main/fastq.py' 2023-12-06T18:19:47,378 adding 'sequana/scripts/main/feature_count.py' 2023-12-06T18:19:47,379 adding 'sequana/scripts/main/g4hunter.py' 2023-12-06T18:19:47,381 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-12-06T18:19:47,382 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-12-06T18:19:47,383 adding 'sequana/scripts/main/gtf_fixer.py' 2023-12-06T18:19:47,385 adding 'sequana/scripts/main/lane_merging.py' 2023-12-06T18:19:47,386 adding 'sequana/scripts/main/main.py' 2023-12-06T18:19:47,388 adding 'sequana/scripts/main/mapping.py' 2023-12-06T18:19:47,389 adding 'sequana/scripts/main/ribodesigner.py' 2023-12-06T18:19:47,391 adding 'sequana/scripts/main/rnadiff.py' 2023-12-06T18:19:47,393 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-12-06T18:19:47,394 adding 'sequana/scripts/main/salmon.py' 2023-12-06T18:19:47,395 adding 'sequana/scripts/main/samplesheet.py' 2023-12-06T18:19:47,396 adding 'sequana/scripts/main/summary.py' 2023-12-06T18:19:47,397 adding 'sequana/scripts/main/taxonomy.py' 2023-12-06T18:19:47,399 adding 'sequana/scripts/main/variants_comparison.py' 2023-12-06T18:19:47,400 adding 'sequana/utils/__init__.py' 2023-12-06T18:19:47,401 adding 'sequana/utils/config.py' 2023-12-06T18:19:47,404 adding 'sequana/utils/datatables_js.py' 2023-12-06T18:19:47,405 adding 'sequana/utils/df2html.py' 2023-12-06T18:19:47,406 adding 'sequana/utils/pandas.py' 2023-12-06T18:19:47,408 adding 'sequana/utils/singleton.py' 2023-12-06T18:19:47,409 adding 'sequana/utils/tree.py' 2023-12-06T18:19:47,410 adding 'sequana/viz/__init__.py' 2023-12-06T18:19:47,412 adding 'sequana/viz/anova.py' 2023-12-06T18:19:47,413 adding 'sequana/viz/boxplot.py' 2023-12-06T18:19:47,414 adding 'sequana/viz/clusterisation.py' 2023-12-06T18:19:47,416 adding 'sequana/viz/core.py' 2023-12-06T18:19:47,418 adding 'sequana/viz/corrplot.py' 2023-12-06T18:19:47,420 adding 'sequana/viz/dendogram.py' 2023-12-06T18:19:47,422 adding 'sequana/viz/heatmap.py' 2023-12-06T18:19:47,424 adding 'sequana/viz/hinton.py' 2023-12-06T18:19:47,425 adding 'sequana/viz/hist2d.py' 2023-12-06T18:19:47,427 adding 'sequana/viz/imshow.py' 2023-12-06T18:19:47,428 adding 'sequana/viz/isomap.py' 2023-12-06T18:19:47,429 adding 'sequana/viz/linkage.py' 2023-12-06T18:19:47,431 adding 'sequana/viz/mds.py' 2023-12-06T18:19:47,432 adding 'sequana/viz/pca.py' 2023-12-06T18:19:47,433 adding 'sequana/viz/plotly.py' 2023-12-06T18:19:47,435 adding 'sequana/viz/scatter.py' 2023-12-06T18:19:47,436 adding 'sequana/viz/venn.py' 2023-12-06T18:19:47,438 adding 'sequana/viz/volcano.py' 2023-12-06T18:19:47,440 adding 'sequana-0.16.3.dist-info/LICENSE' 2023-12-06T18:19:47,442 adding 'sequana-0.16.3.dist-info/METADATA' 2023-12-06T18:19:47,443 adding 'sequana-0.16.3.dist-info/WHEEL' 2023-12-06T18:19:47,444 adding 'sequana-0.16.3.dist-info/entry_points.txt' 2023-12-06T18:19:47,445 adding 'sequana-0.16.3.dist-info/top_level.txt' 2023-12-06T18:19:47,449 adding 'sequana-0.16.3.dist-info/RECORD' 2023-12-06T18:19:47,473 removing build/bdist.linux-armv7l/wheel 2023-12-06T18:19:47,632 Building wheel for sequana (setup.py): finished with status 'done' 2023-12-06T18:19:47,651 Created wheel for sequana: filename=sequana-0.16.3-py3-none-any.whl size=1713154 sha256=bc5fac5643bd6104c61aef4750454aa84459d5e6dfa4f8f6031e576e7924e71c 2023-12-06T18:19:47,652 Stored in directory: /tmp/pip-ephem-wheel-cache-gluic6u6/wheels/73/d8/1a/94c80a7e33914d523e0a0a4e719bc59f8ae8457f891651a2cb 2023-12-06T18:19:47,674 Successfully built sequana 2023-12-06T18:19:47,724 Removed build tracker: '/tmp/pip-build-tracker-xfpr2yhc'