2023-12-06T21:36:39,960 Created temporary directory: /tmp/pip-build-tracker-j2m_jt3e 2023-12-06T21:36:39,961 Initialized build tracking at /tmp/pip-build-tracker-j2m_jt3e 2023-12-06T21:36:39,961 Created build tracker: /tmp/pip-build-tracker-j2m_jt3e 2023-12-06T21:36:39,962 Entered build tracker: /tmp/pip-build-tracker-j2m_jt3e 2023-12-06T21:36:39,962 Created temporary directory: /tmp/pip-wheel-l4bhm0ay 2023-12-06T21:36:39,966 Created temporary directory: /tmp/pip-ephem-wheel-cache-8rndvvkf 2023-12-06T21:36:39,988 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-06T21:36:39,992 2 location(s) to search for versions of nmdc-runtime: 2023-12-06T21:36:39,992 * https://pypi.org/simple/nmdc-runtime/ 2023-12-06T21:36:39,992 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-06T21:36:39,992 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-12-06T21:36:39,993 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-12-06T21:36:39,995 Found index url https://pypi.org/simple/ 2023-12-06T21:36:40,245 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-12-06T21:36:40,251 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,252 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-12-06T21:36:40,253 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,254 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-12-06T21:36:40,254 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,255 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-12-06T21:36:40,256 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,257 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,258 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-12-06T21:36:40,258 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,259 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,260 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-12-06T21:36:40,261 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,262 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-12-06T21:36:40,262 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,263 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-12-06T21:36:40,264 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,264 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-12-06T21:36:40,265 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,266 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-12-06T21:36:40,267 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,268 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-12-06T21:36:40,269 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,270 Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10 2023-12-06T21:36:40,270 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,271 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2023-12-06T21:36:40,272 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/13/bd/6dd46143615928b35bc35b6f246fff3cb4c55d35a8555d47f7cd7565a605/nmdc_runtime-1.0.12-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,273 Found link https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2023-12-06T21:36:40,274 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,275 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2023-12-06T21:36:40,275 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/17/8d/0c38aaa9d5581eda908809321eb9218b90b859c2087483513edfe30e0ae9/nmdc_runtime-1.0.14-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,276 Found link https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.14 2023-12-06T21:36:40,277 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-06T21:36:40,277 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-06T21:36:40,279 Found index url https://www.piwheels.org/simple/ 2023-12-06T21:36:40,455 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-12-06T21:36:40,460 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.13-py3-none-any.whl#sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,461 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,461 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,462 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,462 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,463 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,464 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,464 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,465 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,466 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-06T21:36:40,466 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,466 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,467 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,467 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-06T21:36:40,468 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-06T21:36:40,469 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-12-06T21:36:40,489 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-12-06T21:36:40,507 Collecting nmdc-runtime==1.0.14 2023-12-06T21:36:40,509 Created temporary directory: /tmp/pip-unpack-jc28x4oz 2023-12-06T21:36:40,756 Downloading nmdc_runtime-1.0.14.tar.gz (63.7 MB) 2023-12-06T21:37:01,950 Added nmdc-runtime==1.0.14 from https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz to build tracker '/tmp/pip-build-tracker-j2m_jt3e' 2023-12-06T21:37:01,952 Running setup.py (path:/tmp/pip-wheel-l4bhm0ay/nmdc-runtime_513052cf1b58496d9f2492835d741a21/setup.py) egg_info for package nmdc-runtime 2023-12-06T21:37:01,953 Created temporary directory: /tmp/pip-pip-egg-info-czedk_cq 2023-12-06T21:37:01,953 Preparing metadata (setup.py): started 2023-12-06T21:37:01,955 Running command python setup.py egg_info 2023-12-06T21:37:02,671 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-12-06T21:37:02,671 !! 2023-12-06T21:37:02,673 ******************************************************************************** 2023-12-06T21:37:02,673 Requirements should be satisfied by a PEP 517 installer. 2023-12-06T21:37:02,674 If you are using pip, you can try `pip install --use-pep517`. 2023-12-06T21:37:02,675 ******************************************************************************** 2023-12-06T21:37:02,676 !! 2023-12-06T21:37:02,676 dist.fetch_build_eggs(dist.setup_requires) 2023-12-06T21:37:05,726 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-12-06T21:37:05,824 running egg_info 2023-12-06T21:37:05,826 creating /tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info 2023-12-06T21:37:05,852 writing /tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/PKG-INFO 2023-12-06T21:37:05,856 writing dependency_links to /tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/dependency_links.txt 2023-12-06T21:37:05,857 writing entry points to /tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/entry_points.txt 2023-12-06T21:37:05,859 writing top-level names to /tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/top_level.txt 2023-12-06T21:37:05,860 writing manifest file '/tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-06T21:37:06,050 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-12-06T21:37:06,056 reading manifest file '/tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-06T21:37:06,058 adding license file 'LICENSE' 2023-12-06T21:37:06,061 writing manifest file '/tmp/pip-pip-egg-info-czedk_cq/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-06T21:37:06,174 Preparing metadata (setup.py): finished with status 'done' 2023-12-06T21:37:06,178 Source in /tmp/pip-wheel-l4bhm0ay/nmdc-runtime_513052cf1b58496d9f2492835d741a21 has version 1.0.14, which satisfies requirement nmdc-runtime==1.0.14 from https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz 2023-12-06T21:37:06,179 Removed nmdc-runtime==1.0.14 from https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz from build tracker '/tmp/pip-build-tracker-j2m_jt3e' 2023-12-06T21:37:06,185 Created temporary directory: /tmp/pip-unpack-8syituvu 2023-12-06T21:37:06,186 Created temporary directory: /tmp/pip-unpack-zoboa64y 2023-12-06T21:37:06,189 Building wheels for collected packages: nmdc-runtime 2023-12-06T21:37:06,194 Created temporary directory: /tmp/pip-wheel-xq6go6w1 2023-12-06T21:37:06,194 Building wheel for nmdc-runtime (setup.py): started 2023-12-06T21:37:06,195 Destination directory: /tmp/pip-wheel-xq6go6w1 2023-12-06T21:37:06,196 Running command python setup.py bdist_wheel 2023-12-06T21:37:06,900 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-12-06T21:37:06,901 !! 2023-12-06T21:37:06,902 ******************************************************************************** 2023-12-06T21:37:06,902 Requirements should be satisfied by a PEP 517 installer. 2023-12-06T21:37:06,903 If you are using pip, you can try `pip install --use-pep517`. 2023-12-06T21:37:06,903 ******************************************************************************** 2023-12-06T21:37:06,904 !! 2023-12-06T21:37:06,905 dist.fetch_build_eggs(dist.setup_requires) 2023-12-06T21:37:07,435 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-12-06T21:37:07,527 running bdist_wheel 2023-12-06T21:37:07,634 running build 2023-12-06T21:37:07,634 running build_py 2023-12-06T21:37:07,664 creating build 2023-12-06T21:37:07,664 creating build/lib 2023-12-06T21:37:07,665 creating build/lib/nmdc_runtime 2023-12-06T21:37:07,667 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-12-06T21:37:07,668 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-12-06T21:37:07,671 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-12-06T21:37:07,672 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-12-06T21:37:07,674 creating build/lib/nmdc_runtime/minter 2023-12-06T21:37:07,675 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-12-06T21:37:07,677 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-12-06T21:37:07,679 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-12-06T21:37:07,681 creating build/lib/nmdc_runtime/domain 2023-12-06T21:37:07,682 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-12-06T21:37:07,684 creating build/lib/nmdc_runtime/site 2023-12-06T21:37:07,684 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,687 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,690 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,691 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,693 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,695 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-12-06T21:37:07,698 creating build/lib/nmdc_runtime/client 2023-12-06T21:37:07,699 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-12-06T21:37:07,701 creating build/lib/nmdc_runtime/infrastructure 2023-12-06T21:37:07,702 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-12-06T21:37:07,704 creating build/lib/nmdc_runtime/core 2023-12-06T21:37:07,705 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-12-06T21:37:07,707 creating build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,708 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,710 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,711 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,714 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,717 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,719 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-06T21:37:07,721 creating build/lib/nmdc_runtime/minter/domain 2023-12-06T21:37:07,722 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-12-06T21:37:07,724 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-12-06T21:37:07,726 creating build/lib/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,727 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,729 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,731 creating build/lib/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,732 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,735 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,737 creating build/lib/nmdc_runtime/domain/users 2023-12-06T21:37:07,738 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-12-06T21:37:07,739 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-12-06T21:37:07,741 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-12-06T21:37:07,743 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-12-06T21:37:07,745 creating build/lib/nmdc_runtime/site/drsobjects 2023-12-06T21:37:07,746 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-06T21:37:07,748 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-06T21:37:07,749 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-06T21:37:07,752 creating build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,753 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,754 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,757 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,759 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,761 copying nmdc_runtime/site/translation/neon_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,764 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,766 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,767 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,769 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-12-06T21:37:07,771 creating build/lib/nmdc_runtime/site/export 2023-12-06T21:37:07,772 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-12-06T21:37:07,774 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-12-06T21:37:07,776 creating build/lib/nmdc_runtime/site/normalization 2023-12-06T21:37:07,777 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-12-06T21:37:07,779 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-12-06T21:37:07,781 creating build/lib/nmdc_runtime/site/backup 2023-12-06T21:37:07,782 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-12-06T21:37:07,783 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-12-06T21:37:07,785 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-12-06T21:37:07,787 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-12-06T21:37:07,789 creating build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,790 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,792 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,794 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,795 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,797 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-12-06T21:37:07,799 creating build/lib/nmdc_runtime/site/terminusdb 2023-12-06T21:37:07,800 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-06T21:37:07,802 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-06T21:37:07,804 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-06T21:37:07,806 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-06T21:37:07,810 creating build/lib/nmdc_runtime/site/changesheets 2023-12-06T21:37:07,811 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-12-06T21:37:07,813 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-12-06T21:37:07,815 creating build/lib/nmdc_runtime/infrastructure/database 2023-12-06T21:37:07,816 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-12-06T21:37:07,818 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-12-06T21:37:07,820 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:07,821 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:07,823 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:07,825 creating build/lib/nmdc_runtime/core/db 2023-12-06T21:37:07,826 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-12-06T21:37:07,827 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-12-06T21:37:07,829 creating build/lib/nmdc_runtime/core/exceptions 2023-12-06T21:37:07,830 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-06T21:37:07,832 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-06T21:37:07,834 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-06T21:37:07,881 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-06T21:37:07,881 !! 2023-12-06T21:37:07,882 ******************************************************************************** 2023-12-06T21:37:07,883 Please avoid running ``setup.py`` directly. 2023-12-06T21:37:07,883 Instead, use pypa/build, pypa/installer or other 2023-12-06T21:37:07,883 standards-based tools. 2023-12-06T21:37:07,885 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-06T21:37:07,885 ******************************************************************************** 2023-12-06T21:37:07,886 !! 2023-12-06T21:37:07,887 self.initialize_options() 2023-12-06T21:37:07,908 installing to build/bdist.linux-armv7l/wheel 2023-12-06T21:37:07,909 running install 2023-12-06T21:37:07,932 running install_lib 2023-12-06T21:37:07,960 creating build/bdist.linux-armv7l 2023-12-06T21:37:07,960 creating build/bdist.linux-armv7l/wheel 2023-12-06T21:37:07,962 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-06T21:37:07,963 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-06T21:37:07,965 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-06T21:37:07,966 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-06T21:37:07,968 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-06T21:37:07,970 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,971 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,972 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-06T21:37:07,974 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-06T21:37:07,976 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-06T21:37:07,978 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-06T21:37:07,980 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,981 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,983 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-06T21:37:07,985 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-12-06T21:37:07,986 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-06T21:37:07,987 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-06T21:37:07,989 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-06T21:37:07,991 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-06T21:37:07,992 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-06T21:37:07,994 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-12-06T21:37:07,996 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:07,997 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-06T21:37:07,998 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-06T21:37:08,000 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-06T21:37:08,002 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-06T21:37:08,004 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,006 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,009 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,010 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,012 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,013 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,015 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,018 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,020 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,023 copying build/lib/nmdc_runtime/site/translation/neon_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,025 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,027 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,029 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,031 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-06T21:37:08,033 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-06T21:37:08,034 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-06T21:37:08,035 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-06T21:37:08,037 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-06T21:37:08,038 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-06T21:37:08,040 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-06T21:37:08,042 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-06T21:37:08,043 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-06T21:37:08,045 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-06T21:37:08,046 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-06T21:37:08,048 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-06T21:37:08,050 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,051 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,053 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,055 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,056 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,058 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-06T21:37:08,059 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,062 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-06T21:37:08,063 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-06T21:37:08,065 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-06T21:37:08,066 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-06T21:37:08,069 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-06T21:37:08,073 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-06T21:37:08,073 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-06T21:37:08,076 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-06T21:37:08,077 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-06T21:37:08,080 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-12-06T21:37:08,081 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-12-06T21:37:08,083 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-06T21:37:08,084 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-06T21:37:08,087 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-06T21:37:08,089 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-12-06T21:37:08,090 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-06T21:37:08,092 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:08,093 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:08,095 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-06T21:37:08,096 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-06T21:37:08,098 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-06T21:37:08,100 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-12-06T21:37:08,101 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-12-06T21:37:08,103 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-06T21:37:08,104 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-06T21:37:08,105 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-06T21:37:08,107 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-12-06T21:37:08,109 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-06T21:37:08,110 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-06T21:37:08,111 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-06T21:37:08,113 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-06T21:37:08,115 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-06T21:37:08,117 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,117 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,119 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,121 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,124 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,127 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,129 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-06T21:37:08,131 running install_egg_info 2023-12-06T21:37:08,186 running egg_info 2023-12-06T21:37:08,212 writing nmdc_runtime.egg-info/PKG-INFO 2023-12-06T21:37:08,215 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-12-06T21:37:08,217 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-12-06T21:37:08,219 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-12-06T21:37:08,324 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-12-06T21:37:08,327 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-12-06T21:37:08,388 adding license file 'LICENSE' 2023-12-06T21:37:08,405 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-12-06T21:37:08,407 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.14-py3.11.egg-info 2023-12-06T21:37:08,418 running install_scripts 2023-12-06T21:37:08,433 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.0.14.dist-info/WHEEL 2023-12-06T21:37:08,435 creating '/tmp/pip-wheel-xq6go6w1/nmdc_runtime-1.0.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-06T21:37:08,438 adding 'nmdc_runtime/__init__.py' 2023-12-06T21:37:08,439 adding 'nmdc_runtime/containers.py' 2023-12-06T21:37:08,440 adding 'nmdc_runtime/main.py' 2023-12-06T21:37:08,443 adding 'nmdc_runtime/util.py' 2023-12-06T21:37:08,445 adding 'nmdc_runtime/client/__init__.py' 2023-12-06T21:37:08,446 adding 'nmdc_runtime/core/__init__.py' 2023-12-06T21:37:08,448 adding 'nmdc_runtime/core/db/Database.py' 2023-12-06T21:37:08,449 adding 'nmdc_runtime/core/db/__init__.py' 2023-12-06T21:37:08,451 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-12-06T21:37:08,452 adding 'nmdc_runtime/core/exceptions/base.py' 2023-12-06T21:37:08,453 adding 'nmdc_runtime/core/exceptions/token.py' 2023-12-06T21:37:08,455 adding 'nmdc_runtime/domain/__init__.py' 2023-12-06T21:37:08,456 adding 'nmdc_runtime/domain/users/__init__.py' 2023-12-06T21:37:08,457 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-12-06T21:37:08,458 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-12-06T21:37:08,459 adding 'nmdc_runtime/domain/users/userService.py' 2023-12-06T21:37:08,461 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-12-06T21:37:08,463 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-12-06T21:37:08,464 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-12-06T21:37:08,465 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-12-06T21:37:08,466 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-12-06T21:37:08,468 adding 'nmdc_runtime/lib/__init__.py' 2023-12-06T21:37:08,469 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-12-06T21:37:08,471 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-12-06T21:37:08,474 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-12-06T21:37:08,476 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-12-06T21:37:08,481 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-12-06T21:37:08,483 adding 'nmdc_runtime/minter/__init__.py' 2023-12-06T21:37:08,484 adding 'nmdc_runtime/minter/bootstrap.py' 2023-12-06T21:37:08,486 adding 'nmdc_runtime/minter/config.py' 2023-12-06T21:37:08,487 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-12-06T21:37:08,489 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-12-06T21:37:08,491 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-12-06T21:37:08,492 adding 'nmdc_runtime/minter/domain/model.py' 2023-12-06T21:37:08,493 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-12-06T21:37:08,495 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-12-06T21:37:08,497 adding 'nmdc_runtime/site/__init__.py' 2023-12-06T21:37:08,498 adding 'nmdc_runtime/site/graphs.py' 2023-12-06T21:37:08,502 adding 'nmdc_runtime/site/ops.py' 2023-12-06T21:37:08,504 adding 'nmdc_runtime/site/repository.py' 2023-12-06T21:37:08,507 adding 'nmdc_runtime/site/resources.py' 2023-12-06T21:37:08,508 adding 'nmdc_runtime/site/util.py' 2023-12-06T21:37:08,510 adding 'nmdc_runtime/site/backup/__init__.py' 2023-12-06T21:37:08,511 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-12-06T21:37:08,513 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-12-06T21:37:08,514 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-12-06T21:37:08,516 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-12-06T21:37:08,517 adding 'nmdc_runtime/site/changesheets/base.py' 2023-12-06T21:37:08,519 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-12-06T21:37:08,520 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-12-06T21:37:08,522 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-12-06T21:37:08,523 adding 'nmdc_runtime/site/export/__init__.py' 2023-12-06T21:37:08,525 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-12-06T21:37:08,527 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-12-06T21:37:08,528 adding 'nmdc_runtime/site/normalization/gold.py' 2023-12-06T21:37:08,530 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-12-06T21:37:08,531 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-12-06T21:37:08,533 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-12-06T21:37:08,541 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-12-06T21:37:08,543 adding 'nmdc_runtime/site/translation/__init__.py' 2023-12-06T21:37:08,544 adding 'nmdc_runtime/site/translation/emsl.py' 2023-12-06T21:37:08,545 adding 'nmdc_runtime/site/translation/gold.py' 2023-12-06T21:37:08,548 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-12-06T21:37:08,550 adding 'nmdc_runtime/site/translation/jgi.py' 2023-12-06T21:37:08,553 adding 'nmdc_runtime/site/translation/neon_translator.py' 2023-12-06T21:37:08,557 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-12-06T21:37:08,558 adding 'nmdc_runtime/site/translation/translator.py' 2023-12-06T21:37:08,560 adding 'nmdc_runtime/site/translation/util.py' 2023-12-06T21:37:08,561 adding 'nmdc_runtime/site/validation/__init__.py' 2023-12-06T21:37:08,563 adding 'nmdc_runtime/site/validation/emsl.py' 2023-12-06T21:37:08,564 adding 'nmdc_runtime/site/validation/gold.py' 2023-12-06T21:37:08,565 adding 'nmdc_runtime/site/validation/jgi.py' 2023-12-06T21:37:08,567 adding 'nmdc_runtime/site/validation/util.py' 2023-12-06T21:37:08,569 adding 'nmdc_runtime-1.0.14.dist-info/LICENSE' 2023-12-06T21:37:08,571 adding 'nmdc_runtime-1.0.14.dist-info/METADATA' 2023-12-06T21:37:08,572 adding 'nmdc_runtime-1.0.14.dist-info/WHEEL' 2023-12-06T21:37:08,573 adding 'nmdc_runtime-1.0.14.dist-info/entry_points.txt' 2023-12-06T21:37:08,573 adding 'nmdc_runtime-1.0.14.dist-info/top_level.txt' 2023-12-06T21:37:08,575 adding 'nmdc_runtime-1.0.14.dist-info/RECORD' 2023-12-06T21:37:08,578 removing build/bdist.linux-armv7l/wheel 2023-12-06T21:37:08,718 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-12-06T21:37:08,722 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.0.14-py3-none-any.whl size=121476 sha256=7ea5bd4e9b9348aee578b0f6c64bdc35467a36da334a44d91c50fa1417405f13 2023-12-06T21:37:08,723 Stored in directory: /tmp/pip-ephem-wheel-cache-8rndvvkf/wheels/e3/b3/2a/62208f5aefa8cad12482f613faacc3b2da8d9f74f2a09cab71 2023-12-06T21:37:08,736 Successfully built nmdc-runtime 2023-12-06T21:37:08,743 Removed build tracker: '/tmp/pip-build-tracker-j2m_jt3e'