2023-12-07T14:45:32,007 Created temporary directory: /tmp/pip-build-tracker-9e4qlpfy
2023-12-07T14:45:32,008 Initialized build tracking at /tmp/pip-build-tracker-9e4qlpfy
2023-12-07T14:45:32,008 Created build tracker: /tmp/pip-build-tracker-9e4qlpfy
2023-12-07T14:45:32,009 Entered build tracker: /tmp/pip-build-tracker-9e4qlpfy
2023-12-07T14:45:32,010 Created temporary directory: /tmp/pip-wheel-tyyf0p42
2023-12-07T14:45:32,013 Created temporary directory: /tmp/pip-ephem-wheel-cache-xlh6w5nn
2023-12-07T14:45:32,035 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-07T14:45:32,038 2 location(s) to search for versions of moleculekit:
2023-12-07T14:45:32,038 * https://pypi.org/simple/moleculekit/
2023-12-07T14:45:32,038 * https://www.piwheels.org/simple/moleculekit/
2023-12-07T14:45:32,039 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-12-07T14:45:32,039 Getting page https://pypi.org/simple/moleculekit/
2023-12-07T14:45:32,041 Found index url https://pypi.org/simple/
2023-12-07T14:45:32,265 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-12-07T14:45:32,303   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,304   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-12-07T14:45:32,304   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,305   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-12-07T14:45:32,306   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,307   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-12-07T14:45:32,308   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,308   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-12-07T14:45:32,309   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,310   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-12-07T14:45:32,311   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,311   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-12-07T14:45:32,312   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,313   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-12-07T14:45:32,314   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,314   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-12-07T14:45:32,315   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,315   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-12-07T14:45:32,316   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,316   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-12-07T14:45:32,317   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,318   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-12-07T14:45:32,319   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,319   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-12-07T14:45:32,320   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,321   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-12-07T14:45:32,321   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,322   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-12-07T14:45:32,323   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,323   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-12-07T14:45:32,324   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,325   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-12-07T14:45:32,325   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,326   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-12-07T14:45:32,326   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,327   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-12-07T14:45:32,327   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,328   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-12-07T14:45:32,329   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,330   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-12-07T14:45:32,330   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,331   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-12-07T14:45:32,332   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,332   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-12-07T14:45:32,333   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,334   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-12-07T14:45:32,335   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,335   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-12-07T14:45:32,336   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,336   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-12-07T14:45:32,337   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,338   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-12-07T14:45:32,338   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,339   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-12-07T14:45:32,340   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,340   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-12-07T14:45:32,341   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,342   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-12-07T14:45:32,342   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,343   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-12-07T14:45:32,344   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,344   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-12-07T14:45:32,345   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,346   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-12-07T14:45:32,347   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T14:45:32,347   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-12-07T14:45:32,411   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2023-12-07T14:45:32,413   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-12-07T14:45:32,417   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2023-12-07T14:45:32,423   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-12-07T14:45:32,431   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-12-07T14:45:32,432   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2023-12-07T14:45:32,436   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-12-07T14:45:32,437   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-12-07T14:45:32,438   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-12-07T14:45:32,445   Found link https://files.pythonhosted.org/packages/75/c9/3ed46001d1cc28d02ee2ee30de3377bc39f9545ea0a7b7932b6c31770879/moleculekit-1.6.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.6
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2023-12-07T14:45:32,450   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-12-07T14:45:32,451   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-12-07T14:45:32,452   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-12-07T14:45:32,453   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-12-07T14:45:32,454   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-12-07T14:45:32,455   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-12-07T14:45:32,456   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-12-07T14:45:32,457   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-12-07T14:45:32,458   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-12-07T14:45:32,459   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-12-07T14:45:32,460   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-12-07T14:45:32,460   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-12-07T14:45:32,461   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-12-07T14:45:32,462   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-12-07T14:45:32,463   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-12-07T14:45:32,464   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-12-07T14:45:32,465   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-12-07T14:45:32,466   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-12-07T14:45:32,467   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-12-07T14:45:32,468   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-12-07T14:45:32,469   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-12-07T14:45:32,470   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-12-07T14:45:32,471   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-12-07T14:45:32,472   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2023-12-07T14:45:32,473   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2023-12-07T14:45:32,474 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-12-07T14:45:32,475 Getting page https://www.piwheels.org/simple/moleculekit/
2023-12-07T14:45:32,476 Found index url https://www.piwheels.org/simple/
2023-12-07T14:45:32,649 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-12-07T14:45:32,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,812   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,812   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,813   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,823   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,824   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,824   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,825   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,825   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,826   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,827   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,827   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,828   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,828   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,829   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,829   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,830   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,830   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,831   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,831   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,832   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,833   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,833   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,834   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,834   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,835   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,835   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,836   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,836   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,837   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,837   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,838   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,838   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,839   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,858   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,859   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,860   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,861   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,863   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,864   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,865   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,866   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,866   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,867   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,867   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,867   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,868   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,869   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,869   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,870   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.2-py3-none-any.whl#sha256=70e4609cb3c674eb4fe10a08e84363015b5902e945d850197ef2b13b7cbfe4e0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.1-py3-none-any.whl#sha256=4acefb42cd0b68d4405939bcd59aeb1210f253bbe06edd690250b8a74ef44745 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,871   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.0-py3-none-any.whl#sha256=6f3e1fa4e06e1223a1524393bc7ffeb8fb19caec93bb94da547be2ce0a526ca4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T14:45:32,872   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.32-py3-none-any.whl#sha256=7ed0aed2d398d06856936c77943277e58b3c5ec588e619d1bd18e433bfec7564 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,873   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.30-py3-none-any.whl#sha256=891f8d9b242d2964c64a6142804f2c8951d94829491c38a737abb1ca8635bc09 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T14:45:32,884 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
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2023-12-07T14:45:32,925 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-12-07T14:45:32,943 Collecting moleculekit==1.8.14
2023-12-07T14:45:32,946   Created temporary directory: /tmp/pip-unpack-eilr9i49
2023-12-07T14:45:33,165   Downloading moleculekit-1.8.14.tar.gz (6.2 MB)
2023-12-07T14:45:35,718   Added moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz to build tracker '/tmp/pip-build-tracker-9e4qlpfy'
2023-12-07T14:45:35,726   Created temporary directory: /tmp/pip-build-env-vp3p06ok
2023-12-07T14:45:35,731   Installing build dependencies: started
2023-12-07T14:45:35,732   Running command pip subprocess to install build dependencies
2023-12-07T14:45:36,877   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-07T14:45:37,371   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-07T14:45:38,781   Collecting setuptools
2023-12-07T14:45:38,795     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-07T14:45:39,377     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-07T14:45:39,381     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-07T14:45:39,384     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-07T14:45:39,388     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-07T14:45:39,392     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-07T14:45:39,656   Collecting numpy>=1.18.5
2023-12-07T14:45:39,672     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-12-07T14:45:41,309   Collecting Cython>=0.29.21
2023-12-07T14:45:41,326     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.6-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-12-07T14:45:41,718   Collecting toml
2023-12-07T14:45:41,733     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-12-07T14:45:41,899   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-12-07T14:45:41,918     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-12-07T14:45:44,658   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-12-07T14:45:44,727     Creating /tmp/pip-build-env-vp3p06ok/overlay/local/bin
2023-12-07T14:45:44,730     changing mode of /tmp/pip-build-env-vp3p06ok/overlay/local/bin/versioneer to 755
2023-12-07T14:45:56,891     changing mode of /tmp/pip-build-env-vp3p06ok/overlay/local/bin/f2py to 755
2023-12-07T14:46:01,732     changing mode of /tmp/pip-build-env-vp3p06ok/overlay/local/bin/cygdb to 755
2023-12-07T14:46:01,734     changing mode of /tmp/pip-build-env-vp3p06ok/overlay/local/bin/cython to 755
2023-12-07T14:46:01,736     changing mode of /tmp/pip-build-env-vp3p06ok/overlay/local/bin/cythonize to 755
2023-12-07T14:46:01,783   Successfully installed Cython-3.0.6 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 versioneer-0.28
2023-12-07T14:46:02,447   Installing build dependencies: finished with status 'done'
2023-12-07T14:46:02,450   Getting requirements to build wheel: started
2023-12-07T14:46:02,452   Running command Getting requirements to build wheel
2023-12-07T14:46:32,856   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-12-07T14:46:38,259   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,259   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,260   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,261   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,262   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,263   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,263   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,264   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,264   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,265   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-07T14:46:38,266   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T14:46:38,266   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-12-07T14:46:38,267   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-12-07T14:46:38,267   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-12-07T14:46:38,268   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-12-07T14:46:38,268   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-12-07T14:46:38,269   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-12-07T14:46:38,269   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-12-07T14:46:38,270   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-12-07T14:46:38,270   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-12-07T14:46:38,271   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-12-07T14:46:38,271   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-12-07T14:46:38,533   running egg_info
2023-12-07T14:46:38,539   writing moleculekit.egg-info/PKG-INFO
2023-12-07T14:46:38,542   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-07T14:46:38,544   writing requirements to moleculekit.egg-info/requires.txt
2023-12-07T14:46:38,545   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-07T14:46:38,572   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,573   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,573   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,574   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,575   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,575   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,576   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,576   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,577   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,577   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,578   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,579   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,579   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,580   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,580   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,581   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,581   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,582   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,582   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,583   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,583   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,583   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,584   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,584   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,585   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,585   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:38,586   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-12-07T14:46:40,273   Getting requirements to build wheel: finished with status 'done'
2023-12-07T14:46:40,286   Installing backend dependencies: started
2023-12-07T14:46:40,287   Running command pip subprocess to install backend dependencies
2023-12-07T14:46:41,520   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-07T14:46:42,046   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-07T14:46:42,536   Collecting wheel
2023-12-07T14:46:42,551     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2023-12-07T14:46:44,794   Installing collected packages: wheel
2023-12-07T14:46:45,011     Creating /tmp/pip-build-env-vp3p06ok/normal/local/bin
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2023-12-07T14:46:45,025   Successfully installed wheel-0.42.0
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2023-12-07T14:46:45,501   Created temporary directory: /tmp/pip-modern-metadata-qwjvvgjf
2023-12-07T14:46:45,503   Preparing metadata (pyproject.toml): started
2023-12-07T14:46:45,504   Running command Preparing metadata (pyproject.toml)
2023-12-07T14:46:47,893   running dist_info
2023-12-07T14:46:47,895   creating /tmp/pip-modern-metadata-qwjvvgjf/moleculekit.egg-info
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2023-12-07T14:46:47,956   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,956   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,957   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-07T14:46:47,958   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,959   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-07T14:46:47,961   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,961   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,962   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,962   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-07T14:46:47,963   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,963   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,964   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:47,964   reading manifest file '/tmp/pip-modern-metadata-qwjvvgjf/moleculekit.egg-info/SOURCES.txt'
2023-12-07T14:46:47,965   reading manifest template 'MANIFEST.in'
2023-12-07T14:46:48,189   no previously-included directories found matching 'moleculekit/test-data'
2023-12-07T14:46:48,190   no previously-included directories found matching 'moleculekit/tests'
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2023-12-07T14:46:48,192   adding license file 'LICENSE'
2023-12-07T14:46:48,202   writing manifest file '/tmp/pip-modern-metadata-qwjvvgjf/moleculekit.egg-info/SOURCES.txt'
2023-12-07T14:46:48,209   creating '/tmp/pip-modern-metadata-qwjvvgjf/moleculekit-1.8.14.dist-info'
2023-12-07T14:46:48,436   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-07T14:46:48,441   Source in /tmp/pip-wheel-tyyf0p42/moleculekit_5f4d60c8cd564b8e883872cc56615087 has version 1.8.14, which satisfies requirement moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz
2023-12-07T14:46:48,442   Removed moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz from build tracker '/tmp/pip-build-tracker-9e4qlpfy'
2023-12-07T14:46:48,447 Created temporary directory: /tmp/pip-unpack-bx2jx1bo
2023-12-07T14:46:48,448 Created temporary directory: /tmp/pip-unpack-w5fnpxgm
2023-12-07T14:46:48,456 Building wheels for collected packages: moleculekit
2023-12-07T14:46:48,460   Created temporary directory: /tmp/pip-wheel-ki7nczlx
2023-12-07T14:46:48,461   Destination directory: /tmp/pip-wheel-ki7nczlx
2023-12-07T14:46:48,463   Building wheel for moleculekit (pyproject.toml): started
2023-12-07T14:46:48,464   Running command Building wheel for moleculekit (pyproject.toml)
2023-12-07T14:46:50,635   running bdist_wheel
2023-12-07T14:46:50,650   running build
2023-12-07T14:46:50,650   running build_py
2023-12-07T14:46:50,657   creating build
2023-12-07T14:46:50,657   creating build/lib.linux-armv7l-cpython-311
2023-12-07T14:46:50,658   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,659   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,661   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,665   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,667   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,669   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,671   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,673   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,676   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,677   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,680   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,683   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,685   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,686   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,689   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,691   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,693   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,698   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,700   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,702   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,704   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,706   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:50,708   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,709   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,711   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,714   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,716   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,719   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,721   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,723   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,725   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,727   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,730   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,731   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,733   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,736   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,738   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,741   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-07T14:46:50,743   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-07T14:46:50,744   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-07T14:46:50,746   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-07T14:46:50,747   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-07T14:46:50,749   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-07T14:46:50,752   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-07T14:46:50,753   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-07T14:46:50,756   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-07T14:46:50,757   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-07T14:46:50,761   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-07T14:46:50,763   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-07T14:46:50,767   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,767   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,770   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,772   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,775   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,778   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,780   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,781   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,784   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,786   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,789   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,791   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,792   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,795   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-07T14:46:50,797   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-07T14:46:50,798   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-07T14:46:50,801   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-07T14:46:50,804   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,805   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,807   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,810   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,812   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,815   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,817   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-07T14:46:50,819   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-07T14:46:50,820   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-07T14:46:50,823   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-07T14:46:50,825   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-07T14:46:50,827   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-07T14:46:50,830   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-07T14:46:50,831   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-07T14:46:50,833   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-07T14:46:50,836   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-07T14:46:50,838   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-07T14:46:50,840   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-07T14:46:50,841   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-07T14:46:50,842   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-07T14:46:50,845   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-07T14:46:50,846   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-07T14:46:50,848   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-07T14:46:50,850   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-07T14:46:50,851   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-07T14:46:50,853   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-07T14:46:50,855   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-07T14:46:50,857   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-07T14:46:50,859   running egg_info
2023-12-07T14:46:50,864   writing moleculekit.egg-info/PKG-INFO
2023-12-07T14:46:50,867   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-07T14:46:50,869   writing requirements to moleculekit.egg-info/requires.txt
2023-12-07T14:46:50,870   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-07T14:46:50,886   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,887   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,887   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,888   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,888   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,889   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,889   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,890   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,890   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,891   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,891   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,892   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,892   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,893   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,893   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,894   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,894   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,895   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,895   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,896   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,896   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,897   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,898   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,898   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,899   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,899   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,900   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,900   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,901   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,901   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,902   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,903   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,903   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,904   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,904   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,905   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,905   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,906   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,906   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,907   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,907   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,908   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,908   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,909   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,909   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,910   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,910   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,911   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,912   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,912   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,913   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,913   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,913   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,914   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,914   dependency /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T14:46:50,915   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-07T14:46:50,916   reading manifest template 'MANIFEST.in'
2023-12-07T14:46:51,136   no previously-included directories found matching 'moleculekit/test-data'
2023-12-07T14:46:51,137   no previously-included directories found matching 'moleculekit/tests'
2023-12-07T14:46:51,138   no previously-included directories found matching 'package'
2023-12-07T14:46:51,139   adding license file 'LICENSE'
2023-12-07T14:46:51,152   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-07T14:46:51,160   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-12-07T14:46:51,161   !!

2023-12-07T14:46:51,162           ********************************************************************************
2023-12-07T14:46:51,163           ############################
2023-12-07T14:46:51,163           # Package would be ignored #
2023-12-07T14:46:51,164           ############################
2023-12-07T14:46:51,164           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-12-07T14:46:51,165           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,166           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,167           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-12-07T14:46:51,167           to the `packages` configuration field.

2023-12-07T14:46:51,168           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,169           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,169           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,170           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,172           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,173           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-12-07T14:46:51,173           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-12-07T14:46:51,174           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,174           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,175           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,175           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,176           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,177           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,178                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,178                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,179                 directory, all directories are treated like packages.
2023-12-07T14:46:51,179           ********************************************************************************

2023-12-07T14:46:51,180   !!
2023-12-07T14:46:51,180     check.warn(importable)
2023-12-07T14:46:51,181   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-12-07T14:46:51,181   !!

2023-12-07T14:46:51,182           ********************************************************************************
2023-12-07T14:46:51,183           ############################
2023-12-07T14:46:51,183           # Package would be ignored #
2023-12-07T14:46:51,184           ############################
2023-12-07T14:46:51,184           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-12-07T14:46:51,185           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,186           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,186           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-12-07T14:46:51,187           to the `packages` configuration field.

2023-12-07T14:46:51,187           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,188           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,189           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,190           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,191           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,192           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-12-07T14:46:51,192           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-12-07T14:46:51,192           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,193           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,193           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,194           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,195           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,197           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,197                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,198                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,198                 directory, all directories are treated like packages.
2023-12-07T14:46:51,199           ********************************************************************************

2023-12-07T14:46:51,200   !!
2023-12-07T14:46:51,201     check.warn(importable)
2023-12-07T14:46:51,201   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-12-07T14:46:51,202   !!

2023-12-07T14:46:51,203           ********************************************************************************
2023-12-07T14:46:51,203           ############################
2023-12-07T14:46:51,203           # Package would be ignored #
2023-12-07T14:46:51,204           ############################
2023-12-07T14:46:51,204           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-12-07T14:46:51,205           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,205           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,206           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-12-07T14:46:51,206           to the `packages` configuration field.

2023-12-07T14:46:51,207           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,208           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,208           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,209           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,210           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,211           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-12-07T14:46:51,211           already explicitly excluding 'moleculekit.distance_utils' via
2023-12-07T14:46:51,212           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,212           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,213           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,214           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,215           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,218           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,218                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,223                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,231                 directory, all directories are treated like packages.
2023-12-07T14:46:51,233           ********************************************************************************

2023-12-07T14:46:51,235   !!
2023-12-07T14:46:51,235     check.warn(importable)
2023-12-07T14:46:51,236   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-12-07T14:46:51,236   !!

2023-12-07T14:46:51,237           ********************************************************************************
2023-12-07T14:46:51,238           ############################
2023-12-07T14:46:51,238           # Package would be ignored #
2023-12-07T14:46:51,239           ############################
2023-12-07T14:46:51,240           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-12-07T14:46:51,240           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,241           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,242           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-12-07T14:46:51,242           to the `packages` configuration field.

2023-12-07T14:46:51,244           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,244           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,245           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,246           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,247           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,250           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-12-07T14:46:51,250           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-12-07T14:46:51,251           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,251           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,252           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,253           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,254           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,256           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,256                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,257                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,257                 directory, all directories are treated like packages.
2023-12-07T14:46:51,258           ********************************************************************************

2023-12-07T14:46:51,259   !!
2023-12-07T14:46:51,260     check.warn(importable)
2023-12-07T14:46:51,260   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-12-07T14:46:51,261   !!

2023-12-07T14:46:51,262           ********************************************************************************
2023-12-07T14:46:51,263           ############################
2023-12-07T14:46:51,263           # Package would be ignored #
2023-12-07T14:46:51,264           ############################
2023-12-07T14:46:51,264           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-12-07T14:46:51,265           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,276           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,276           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-12-07T14:46:51,277           to the `packages` configuration field.

2023-12-07T14:46:51,278           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,279           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,279           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,280           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,281           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,282           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-12-07T14:46:51,283           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-12-07T14:46:51,284           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,284           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,285           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,286           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,288           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,299           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,301                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,302                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,302                 directory, all directories are treated like packages.
2023-12-07T14:46:51,303           ********************************************************************************

2023-12-07T14:46:51,304   !!
2023-12-07T14:46:51,304     check.warn(importable)
2023-12-07T14:46:51,305   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-12-07T14:46:51,305   !!

2023-12-07T14:46:51,306           ********************************************************************************
2023-12-07T14:46:51,307           ############################
2023-12-07T14:46:51,307           # Package would be ignored #
2023-12-07T14:46:51,308           ############################
2023-12-07T14:46:51,308           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-12-07T14:46:51,309           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,314           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,315           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-12-07T14:46:51,318           to the `packages` configuration field.

2023-12-07T14:46:51,325           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,326           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,327           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,328           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,329           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,330           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-12-07T14:46:51,330           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-12-07T14:46:51,331           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,331           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,332           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,333           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,334           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,335           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,336                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,337                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,337                 directory, all directories are treated like packages.
2023-12-07T14:46:51,338           ********************************************************************************

2023-12-07T14:46:51,339   !!
2023-12-07T14:46:51,339     check.warn(importable)
2023-12-07T14:46:51,340   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-12-07T14:46:51,344   !!

2023-12-07T14:46:51,345           ********************************************************************************
2023-12-07T14:46:51,346           ############################
2023-12-07T14:46:51,347           # Package would be ignored #
2023-12-07T14:46:51,347           ############################
2023-12-07T14:46:51,348           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-12-07T14:46:51,349           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,349           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,350           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-12-07T14:46:51,350           to the `packages` configuration field.

2023-12-07T14:46:51,351           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,352           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,352           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,353           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,354           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,355           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-12-07T14:46:51,355           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-12-07T14:46:51,356           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,356           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,357           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,358           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,359           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,361           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,361                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,362                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,363                 directory, all directories are treated like packages.
2023-12-07T14:46:51,363           ********************************************************************************

2023-12-07T14:46:51,365   !!
2023-12-07T14:46:51,365     check.warn(importable)
2023-12-07T14:46:51,366   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-12-07T14:46:51,366   !!

2023-12-07T14:46:51,367           ********************************************************************************
2023-12-07T14:46:51,368           ############################
2023-12-07T14:46:51,368           # Package would be ignored #
2023-12-07T14:46:51,369           ############################
2023-12-07T14:46:51,370           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-12-07T14:46:51,370           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,371           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,372           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-12-07T14:46:51,372           to the `packages` configuration field.

2023-12-07T14:46:51,374           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,374           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,375           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,376           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,377           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,378           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-12-07T14:46:51,379           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-12-07T14:46:51,379           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,380           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,380           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,381           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,382           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,383           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,384                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,384                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,385                 directory, all directories are treated like packages.
2023-12-07T14:46:51,385           ********************************************************************************

2023-12-07T14:46:51,386   !!
2023-12-07T14:46:51,387     check.warn(importable)
2023-12-07T14:46:51,387   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-12-07T14:46:51,388   !!

2023-12-07T14:46:51,388           ********************************************************************************
2023-12-07T14:46:51,389           ############################
2023-12-07T14:46:51,389           # Package would be ignored #
2023-12-07T14:46:51,390           ############################
2023-12-07T14:46:51,390           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-12-07T14:46:51,391           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,392           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,393           package, please make sure that 'moleculekit.share' is explicitly added
2023-12-07T14:46:51,393           to the `packages` configuration field.

2023-12-07T14:46:51,394           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,395           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,395           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,396           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,397           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,424           If you don't want 'moleculekit.share' to be distributed and are
2023-12-07T14:46:51,429           already explicitly excluding 'moleculekit.share' via
2023-12-07T14:46:51,436           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,459           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,502           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,540           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,541           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,542           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,543                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,543                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,544                 directory, all directories are treated like packages.
2023-12-07T14:46:51,544           ********************************************************************************

2023-12-07T14:46:51,545   !!
2023-12-07T14:46:51,546     check.warn(importable)
2023-12-07T14:46:51,547   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-12-07T14:46:51,547   !!

2023-12-07T14:46:51,549           ********************************************************************************
2023-12-07T14:46:51,549           ############################
2023-12-07T14:46:51,549           # Package would be ignored #
2023-12-07T14:46:51,550           ############################
2023-12-07T14:46:51,551           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-12-07T14:46:51,551           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,552           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,552           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-12-07T14:46:51,553           to the `packages` configuration field.

2023-12-07T14:46:51,554           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,554           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,555           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,555           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,556           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,557           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-12-07T14:46:51,558           already explicitly excluding 'moleculekit.share.atomselect' via
2023-12-07T14:46:51,558           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,559           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,559           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,560           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,561           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,562           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,563                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,563                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,564                 directory, all directories are treated like packages.
2023-12-07T14:46:51,564           ********************************************************************************

2023-12-07T14:46:51,565   !!
2023-12-07T14:46:51,566     check.warn(importable)
2023-12-07T14:46:51,566   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-12-07T14:46:51,567   !!

2023-12-07T14:46:51,568           ********************************************************************************
2023-12-07T14:46:51,568           ############################
2023-12-07T14:46:51,569           # Package would be ignored #
2023-12-07T14:46:51,569           ############################
2023-12-07T14:46:51,570           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-12-07T14:46:51,570           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,571           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,572           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-12-07T14:46:51,572           to the `packages` configuration field.

2023-12-07T14:46:51,573           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,574           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,574           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,575           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,576           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,577           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-12-07T14:46:51,577           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-12-07T14:46:51,577           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,578           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,578           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,579           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,580           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,581           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,582                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,582                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,582                 directory, all directories are treated like packages.
2023-12-07T14:46:51,583           ********************************************************************************

2023-12-07T14:46:51,584   !!
2023-12-07T14:46:51,584     check.warn(importable)
2023-12-07T14:46:51,585   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-12-07T14:46:51,585   !!

2023-12-07T14:46:51,586           ********************************************************************************
2023-12-07T14:46:51,586           ############################
2023-12-07T14:46:51,587           # Package would be ignored #
2023-12-07T14:46:51,587           ############################
2023-12-07T14:46:51,588           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-12-07T14:46:51,588           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,589           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,590           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-12-07T14:46:51,590           to the `packages` configuration field.

2023-12-07T14:46:51,591           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,591           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,592           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,593           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,594           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,595           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-12-07T14:46:51,596           already explicitly excluding 'moleculekit.tmalign' via
2023-12-07T14:46:51,596           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,596           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,597           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,598           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,599           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,601           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,601                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,602                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,602                 directory, all directories are treated like packages.
2023-12-07T14:46:51,603           ********************************************************************************

2023-12-07T14:46:51,603   !!
2023-12-07T14:46:51,604     check.warn(importable)
2023-12-07T14:46:51,604   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-12-07T14:46:51,605   !!

2023-12-07T14:46:51,606           ********************************************************************************
2023-12-07T14:46:51,606           ############################
2023-12-07T14:46:51,606           # Package would be ignored #
2023-12-07T14:46:51,607           ############################
2023-12-07T14:46:51,607           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-12-07T14:46:51,608           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,609           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,609           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-12-07T14:46:51,610           to the `packages` configuration field.

2023-12-07T14:46:51,611           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,611           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,611           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,612           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,613           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,615           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-12-07T14:46:51,615           already explicitly excluding 'moleculekit.tmalign.include' via
2023-12-07T14:46:51,616           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,616           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,616           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,617           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,618           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,620           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,620                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,621                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,621                 directory, all directories are treated like packages.
2023-12-07T14:46:51,622           ********************************************************************************

2023-12-07T14:46:51,623   !!
2023-12-07T14:46:51,623     check.warn(importable)
2023-12-07T14:46:51,624   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-12-07T14:46:51,624   !!

2023-12-07T14:46:51,625           ********************************************************************************
2023-12-07T14:46:51,626           ############################
2023-12-07T14:46:51,626           # Package would be ignored #
2023-12-07T14:46:51,627           ############################
2023-12-07T14:46:51,627           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-12-07T14:46:51,628           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,629           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,629           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-12-07T14:46:51,630           to the `packages` configuration field.

2023-12-07T14:46:51,631           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,631           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,631           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,632           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,633           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,634           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-12-07T14:46:51,634           already explicitly excluding 'moleculekit.tmalign.src' via
2023-12-07T14:46:51,635           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,635           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,635           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,636           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,637           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,638           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,639                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,639                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,640                 directory, all directories are treated like packages.
2023-12-07T14:46:51,640           ********************************************************************************

2023-12-07T14:46:51,641   !!
2023-12-07T14:46:51,642     check.warn(importable)
2023-12-07T14:46:51,642   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-12-07T14:46:51,643   !!

2023-12-07T14:46:51,644           ********************************************************************************
2023-12-07T14:46:51,644           ############################
2023-12-07T14:46:51,645           # Package would be ignored #
2023-12-07T14:46:51,645           ############################
2023-12-07T14:46:51,645           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-12-07T14:46:51,646           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,647           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,647           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-12-07T14:46:51,648           to the `packages` configuration field.

2023-12-07T14:46:51,649           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,649           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,650           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,651           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,652           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,653           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-12-07T14:46:51,653           already explicitly excluding 'moleculekit.wrapping' via
2023-12-07T14:46:51,654           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,654           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,655           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,656           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,656           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,658           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,658                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,659                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,659                 directory, all directories are treated like packages.
2023-12-07T14:46:51,659           ********************************************************************************

2023-12-07T14:46:51,660   !!
2023-12-07T14:46:51,661     check.warn(importable)
2023-12-07T14:46:51,661   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-12-07T14:46:51,661   !!

2023-12-07T14:46:51,662           ********************************************************************************
2023-12-07T14:46:51,663           ############################
2023-12-07T14:46:51,663           # Package would be ignored #
2023-12-07T14:46:51,664           ############################
2023-12-07T14:46:51,664           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-12-07T14:46:51,665           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,666           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,666           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-12-07T14:46:51,667           to the `packages` configuration field.

2023-12-07T14:46:51,668           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,668           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,668           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,669           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,670           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,671           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-12-07T14:46:51,672           already explicitly excluding 'moleculekit.xtc_utils' via
2023-12-07T14:46:51,672           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,673           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,673           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,674           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,675           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,676           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,677                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,677                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,678                 directory, all directories are treated like packages.
2023-12-07T14:46:51,678           ********************************************************************************

2023-12-07T14:46:51,679   !!
2023-12-07T14:46:51,680     check.warn(importable)
2023-12-07T14:46:51,680   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-12-07T14:46:51,681   !!

2023-12-07T14:46:51,682           ********************************************************************************
2023-12-07T14:46:51,682           ############################
2023-12-07T14:46:51,683           # Package would be ignored #
2023-12-07T14:46:51,684           ############################
2023-12-07T14:46:51,684           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-12-07T14:46:51,685           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,685           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,686           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-12-07T14:46:51,686           to the `packages` configuration field.

2023-12-07T14:46:51,687           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,688           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,688           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,689           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,690           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,691           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-12-07T14:46:51,691           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-12-07T14:46:51,692           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,692           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,692           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,693           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,694           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,696           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,696                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,696                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,697                 directory, all directories are treated like packages.
2023-12-07T14:46:51,697           ********************************************************************************

2023-12-07T14:46:51,698   !!
2023-12-07T14:46:51,699     check.warn(importable)
2023-12-07T14:46:51,699   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-12-07T14:46:51,700   !!

2023-12-07T14:46:51,701           ********************************************************************************
2023-12-07T14:46:51,701           ############################
2023-12-07T14:46:51,702           # Package would be ignored #
2023-12-07T14:46:51,702           ############################
2023-12-07T14:46:51,703           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-12-07T14:46:51,703           but it is absent from setuptools' `packages` configuration.

2023-12-07T14:46:51,704           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T14:46:51,705           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-12-07T14:46:51,705           to the `packages` configuration field.

2023-12-07T14:46:51,706           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T14:46:51,707           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T14:46:51,707           instead of `find_packages(...)`/`find:`).

2023-12-07T14:46:51,708           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T14:46:51,709           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T14:46:51,710           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-12-07T14:46:51,711           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-12-07T14:46:51,711           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T14:46:51,711           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T14:46:51,712           combination with a more fine grained `package-data` configuration.

2023-12-07T14:46:51,712           You can read more about "package data files" on setuptools documentation page:

2023-12-07T14:46:51,713           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T14:46:51,715           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T14:46:51,715                 even if it does not contain any `.py` files.
2023-12-07T14:46:51,715                 On the other hand, currently there is no concept of package data
2023-12-07T14:46:51,716                 directory, all directories are treated like packages.
2023-12-07T14:46:51,716           ********************************************************************************

2023-12-07T14:46:51,717   !!
2023-12-07T14:46:51,717     check.warn(importable)
2023-12-07T14:46:51,718   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:51,718   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:51,719   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-07T14:46:51,719   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-07T14:46:51,720   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-07T14:46:51,720   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-07T14:46:51,720   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-07T14:46:51,721   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-07T14:46:51,721   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-07T14:46:51,722   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-07T14:46:51,722   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-07T14:46:51,723   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-07T14:46:51,723   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-07T14:46:51,724   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-07T14:46:51,724   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-07T14:46:51,725   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-07T14:46:51,725   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-07T14:46:51,726   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-07T14:46:51,726   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-07T14:46:51,727   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-07T14:46:51,727   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-12-07T14:46:51,728   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,728   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,729   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,729   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,730   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,730   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,730   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,731   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,731   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,732   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,732   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,733   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,733   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,734   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,734   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,735   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,735   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,736   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,736   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,737   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,737   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,738   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,738   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,739   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,739   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,740   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,740   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,741   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,742   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,742   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,743   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,743   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,744   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,744   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,744   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,745   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,745   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,746   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,746   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,747   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,747   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,748   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,748   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,749   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,749   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,750   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,750   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,751   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,751   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,752   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,752   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,753   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,753   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,754   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,754   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,755   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,755   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,756   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,756   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,757   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,757   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,758   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,758   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,759   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,759   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,759   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,760   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,760   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,761   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,761   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,762   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,762   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,763   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,763   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,764   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,764   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,764   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,765   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,765   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,766   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,766   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,767   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,767   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,768   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,769   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,769   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,769   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,770   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,770   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,771   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,771   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,772   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,773   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,774   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,777   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,779   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,781   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,783   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,785   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,787   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,788   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,790   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,793   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,795   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,797   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,798   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,800   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,803   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,805   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,807   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,809   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,811   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,813   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,815   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,817   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,819   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,821   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,823   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,825   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,827   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,829   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,831   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,833   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,835   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,837   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,839   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,841   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,843   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,846   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,848   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,850   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,852   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,854   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,856   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,858   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,860   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,862   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,864   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,866   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,868   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,870   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,872   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,874   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,876   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,878   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,880   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,882   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,884   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,886   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,888   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,890   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,892   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,894   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,896   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,898   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,900   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,902   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,904   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,906   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,908   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,911   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,913   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,915   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,917   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,919   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,921   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,923   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,925   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,927   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,929   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,931   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,933   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,935   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,937   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,939   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,941   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-07T14:46:51,943   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-07T14:46:51,944   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-07T14:46:51,964   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-07T14:46:51,966   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-07T14:46:51,968   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-07T14:46:51,969   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-07T14:46:51,971   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-07T14:46:51,972   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-07T14:46:51,978   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-07T14:46:51,979   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-07T14:46:52,001   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-07T14:46:52,003   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-07T14:46:52,004   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-07T14:46:52,027   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-07T14:46:52,029   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-07T14:46:52,031   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-07T14:46:52,032   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-07T14:46:52,035   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-07T14:46:52,037   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-07T14:46:52,039   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-07T14:46:52,040   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-07T14:46:52,043   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-07T14:46:52,046   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-07T14:46:52,048   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-07T14:46:52,049   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-07T14:46:52,073   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-07T14:46:52,075   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-07T14:46:52,076   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-07T14:46:52,095   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-07T14:46:52,098   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-07T14:46:52,099   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-07T14:46:52,126   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-07T14:46:52,128   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-07T14:46:52,130   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-07T14:46:52,149   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-07T14:46:52,159   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-07T14:46:52,159   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.14'
2023-12-07T14:46:52,160   running build_ext
2023-12-07T14:46:52,170   building 'moleculekit.interactions.hbonds' extension
2023-12-07T14:46:52,171   creating build/temp.linux-armv7l-cpython-311
2023-12-07T14:46:52,171   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-12-07T14:46:52,172   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-07T14:46:52,174   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-07T14:46:52,175   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-12-07T14:46:52,491   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:46:52,492                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:46:52,492                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:46:52,493                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-12-07T14:46:52,494   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:46:52,494      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:46:52,495         |  ^~~~~~~
2023-12-07T14:47:22,799   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:47:23,086   building 'moleculekit.interactions.pipi' extension
2023-12-07T14:47:23,087   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-07T14:47:23,088   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-12-07T14:47:23,391   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:47:23,391                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:47:23,392                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:47:23,392                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-12-07T14:47:23,393   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:47:23,393      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:47:23,394         |  ^~~~~~~
2023-12-07T14:47:56,223   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:47:56,510   building 'moleculekit.interactions.cationpi' extension
2023-12-07T14:47:56,511   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-07T14:47:56,511   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-12-07T14:47:56,819   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:47:56,820                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:47:56,821                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:47:56,821                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-12-07T14:47:56,822   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:47:56,822      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:47:56,823         |  ^~~~~~~
2023-12-07T14:48:28,948   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:48:29,234   building 'moleculekit.interactions.sigmahole' extension
2023-12-07T14:48:29,235   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-07T14:48:29,236   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-12-07T14:48:29,540   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:48:29,541                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:48:29,541                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:48:29,542                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-12-07T14:48:29,542   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:48:29,543      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:48:29,543         |  ^~~~~~~
2023-12-07T14:49:01,335   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:49:01,616   building 'moleculekit.wrapping' extension
2023-12-07T14:49:01,617   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-07T14:49:01,618   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-12-07T14:49:01,930   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:49:01,930                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:49:01,931                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:49:01,932                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-12-07T14:49:01,932   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:49:01,933      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:49:01,934         |  ^~~~~~~
2023-12-07T14:49:32,044   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:49:32,242   building 'moleculekit.bondguesser_utils' extension
2023-12-07T14:49:32,243   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-07T14:49:32,244   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-12-07T14:49:32,548   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:49:32,549                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:49:32,550                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:49:32,550                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-12-07T14:49:32,550   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:49:32,551      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:49:32,551         |  ^~~~~~~
2023-12-07T14:49:34,838   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-12-07T14:49:34,838   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T14:49:34,839   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-12-07T14:49:34,839         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T14:49:34,840   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T14:49:34,841   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-12-07T14:49:34,842         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T14:49:34,842   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T14:49:34,843   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-12-07T14:49:34,844         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T14:49:34,845   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,845   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,846         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,846   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,847   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T14:49:34,848         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,848   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,849   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,850         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,851   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,852   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,852         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,853   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,853   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T14:49:34,854         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,854   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,855   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,855         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,856   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,857   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,857         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,858   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,859   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T14:49:34,860         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,860   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,861   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,862         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,863   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,863   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,864         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,865   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,866   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,866         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,867   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,868   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,868         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,869   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,870   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,870         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,871   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,872   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T14:49:34,873         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,873   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,874   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,874         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,875   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,875   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T14:49:34,876         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,876   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,877   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,877         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,878   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,879   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T14:49:34,879         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,880   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,881   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,882         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,883   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T14:49:34,884   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T14:49:34,884         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,885   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-12-07T14:49:34,886   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T14:49:34,887   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-12-07T14:49:34,887         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-12-07T14:49:34,888   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T14:49:34,889   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-12-07T14:49:34,889         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-07T14:50:01,255   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:50:01,521   building 'moleculekit.atomselect_utils' extension
2023-12-07T14:50:01,521   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-07T14:50:01,522   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-12-07T14:50:01,829   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:50:01,829                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:50:01,830                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:50:01,830                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-12-07T14:50:01,831   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:50:01,831      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:50:01,832         |  ^~~~~~~
2023-12-07T14:50:04,349   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-12-07T14:50:04,350   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T14:50:04,350   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-12-07T14:50:04,351         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-07T14:50:04,357   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-07T14:50:04,358   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T14:50:04,358   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-07T14:50:04,359         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T14:50:04,365   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-07T14:50:04,366   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T14:50:04,367   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-07T14:50:04,367         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T14:50:38,036   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:50:38,328   building 'moleculekit.distance_utils' extension
2023-12-07T14:50:38,329   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-07T14:50:38,329   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-12-07T14:50:38,636   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:50:38,637                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:50:38,638                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:50:38,638                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-12-07T14:50:38,639   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:50:38,639      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:50:38,640         |  ^~~~~~~
2023-12-07T14:51:17,138   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:51:17,427   building 'moleculekit.occupancy_utils' extension
2023-12-07T14:51:17,428   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-07T14:51:17,429   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-12-07T14:51:17,742   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:51:17,743                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:51:17,744                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:51:17,744                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-12-07T14:51:17,745   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:51:17,745      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:51:17,746         |  ^~~~~~~
2023-12-07T14:51:44,828   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:51:45,025   building 'moleculekit.xtc' extension
2023-12-07T14:51:45,026   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-07T14:51:45,026   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-07T14:51:45,027   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-12-07T14:51:45,672   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,673      66 |         "OK",
2023-12-07T14:51:45,674         |         ^~~~
2023-12-07T14:51:45,675   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,675      67 |         "Header",
2023-12-07T14:51:45,676         |         ^~~~~~~~
2023-12-07T14:51:45,677   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,678      68 |         "String",
2023-12-07T14:51:45,679         |         ^~~~~~~~
2023-12-07T14:51:45,680   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,680      69 |         "Double",
2023-12-07T14:51:45,681         |         ^~~~~~~~
2023-12-07T14:51:45,682   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,683      70 |         "Integer",
2023-12-07T14:51:45,684         |         ^~~~~~~~~
2023-12-07T14:51:45,684   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,685      71 |         "Float",
2023-12-07T14:51:45,686         |         ^~~~~~~
2023-12-07T14:51:45,686   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,687      72 |         "Unsigned integer",
2023-12-07T14:51:45,688         |         ^~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,689   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,690      73 |         "Compressed 3D coordinate",
2023-12-07T14:51:45,690         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,691   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,692      74 |         "Closing file",
2023-12-07T14:51:45,693         |         ^~~~~~~~~~~~~~
2023-12-07T14:51:45,694   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,694      75 |         "Magic number",
2023-12-07T14:51:45,695         |         ^~~~~~~~~~~~~~
2023-12-07T14:51:45,695   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,696      76 |         "Not enough memory",
2023-12-07T14:51:45,696         |         ^~~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,697   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,698      77 |         "End of file",
2023-12-07T14:51:45,698         |         ^~~~~~~~~~~~~
2023-12-07T14:51:45,699   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T14:51:45,700      78 |         "File not found"
2023-12-07T14:51:45,700         |         ^~~~~~~~~~~~~~~~
2023-12-07T14:51:45,701   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-07T14:51:45,701   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,702     459 |     while (size >= num && num_of_bits < 32)
2023-12-07T14:51:45,703         |            ~~~~~^~~~~~
2023-12-07T14:51:45,703   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-07T14:51:45,704   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,705     505 |     while (bytes[num_of_bytes] >= num)
2023-12-07T14:51:45,705         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-07T14:51:45,706   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-07T14:51:45,707   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,708     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-07T14:51:45,708         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,709   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,710     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-12-07T14:51:45,711         |                             ~~^~~~~~~~~~~~~~
2023-12-07T14:51:45,712   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,712     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-12-07T14:51:45,713         |                             ~~^~~~~~~~~~~~~~~~
2023-12-07T14:51:45,714   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-07T14:51:45,714   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,715     664 |                 if (lastbits < num_of_bits)
2023-12-07T14:51:45,716         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-12-07T14:51:45,717   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-07T14:51:45,717   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,718     785 |         if(size3>xfp->buf1size)
2023-12-07T14:51:45,719         |            ~~~~~^~~~~~~~~~~~~~
2023-12-07T14:51:45,720   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,720     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T14:51:45,721         |                          ^
2023-12-07T14:51:45,721   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,722     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,723         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,723   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,724     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,724         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,725   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,726     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,726         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,727   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,727     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,728         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,729   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,729     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,730         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,731   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,732     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-07T14:51:45,732         |                                    ~~~~~~~~~^~~~~~~~
2023-12-07T14:51:45,733   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,734     756 |         int smallidx,  minidx, maxidx;
2023-12-07T14:51:45,735         |                        ^~~~~~
2023-12-07T14:51:45,735   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,736     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-07T14:51:45,737         |                                ^~~~~~
2023-12-07T14:51:45,737   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-07T14:51:45,738     763 |         int errval=1;
2023-12-07T14:51:45,739         |             ^~~~~~
2023-12-07T14:51:45,740   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-07T14:51:45,740   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,741    1011 |         if(size3>xfp->buf1size)
2023-12-07T14:51:45,742         |            ~~~~~^~~~~~~~~~~~~~
2023-12-07T14:51:45,743   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,744    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T14:51:45,745         |                                 ~~~~~~~~^~~~~~~
2023-12-07T14:51:45,745   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,746    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T14:51:45,746         |                           ~~~~~~~~^~~~~~~
2023-12-07T14:51:45,747   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,747    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T14:51:45,748         |                           ~~~~~~~~^~~~~~~
2023-12-07T14:51:45,748   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,749    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-07T14:51:45,750         |                         ^
2023-12-07T14:51:45,750   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,751    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T14:51:45,751         |                          ^
2023-12-07T14:51:45,752   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,753    1275 |         if(tmp==(unsigned int)buf2[0])
2023-12-07T14:51:45,753         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,754   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,755    1001 |         int errval;
2023-12-07T14:51:45,756         |             ^~~~~~
2023-12-07T14:51:45,756   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-07T14:51:45,757   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,758    1316 |         if(size3>xfp->buf1size)
2023-12-07T14:51:45,759         |            ~~~~~^~~~~~~~~~~~~~
2023-12-07T14:51:45,760   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,760    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T14:51:45,761         |                          ^
2023-12-07T14:51:45,762   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,762    1289 |         int smallidx,  maxidx, minidx;
2023-12-07T14:51:45,763         |                                ^~~~~~
2023-12-07T14:51:45,764   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,764    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-07T14:51:45,765         |                                ^~~~~~
2023-12-07T14:51:45,766   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-07T14:51:45,767    1297 |         int errval=1;
2023-12-07T14:51:45,768         |             ^~~~~~
2023-12-07T14:51:45,769   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-07T14:51:45,769   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,770    1513 |         if(size3>xfp->buf1size) {
2023-12-07T14:51:45,771         |            ~~~~~^~~~~~~~~~~~~~
2023-12-07T14:51:45,772   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,772    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-07T14:51:45,773         |                         ^
2023-12-07T14:51:45,773   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T14:51:45,774    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T14:51:45,775         |                          ^
2023-12-07T14:51:45,775   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T14:51:45,776    1743 |         if(tmp==(unsigned int)buf2[0])
2023-12-07T14:51:45,777         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T14:51:45,777   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-07T14:51:45,778    1504 |         int errval=1;
2023-12-07T14:51:45,779         |             ^~~~~~
2023-12-07T14:51:48,592   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-12-07T14:51:48,860   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-12-07T14:51:49,638   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-12-07T14:51:49,639   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-07T14:51:49,640     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-12-07T14:51:49,640         |             ^~~
2023-12-07T14:51:49,648   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-12-07T14:51:49,648   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-07T14:51:49,649     418 |         int nf3 = nframes * 3;
2023-12-07T14:51:49,650         |             ^~~
2023-12-07T14:51:49,655   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-12-07T14:51:49,655   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-12-07T14:51:49,656     491 |         int reading_index = 0;
2023-12-07T14:51:49,657         |             ^~~~~~~~~~~~~
2023-12-07T14:51:49,657   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-12-07T14:51:49,658     492 |         int writing_index = 0;
2023-12-07T14:51:49,659         |             ^~~~~~~~~~~~~
2023-12-07T14:51:50,539   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-12-07T14:51:50,855   In file included from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T14:51:50,855                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T14:51:50,856                    from /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T14:51:50,856                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-12-07T14:51:50,857   /tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T14:51:50,858      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T14:51:50,858         |  ^~~~~~~
2023-12-07T14:52:14,730   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:52:15,011   building 'moleculekit.tmalign' extension
2023-12-07T14:52:15,012   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-07T14:52:15,013   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-07T14:52:15,014   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-12-07T14:52:48,747   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-vp3p06ok/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-12-07T14:53:11,299   In file included from /usr/include/c++/12/vector:70,
2023-12-07T14:53:11,299                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-07T14:53:11,300   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-12-07T14:53:11,301   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-12-07T14:53:11,302     439 |       vector<_Tp, _Alloc>::
2023-12-07T14:53:11,302         |       ^~~~~~~~~~~~~~~~~~~
2023-12-07T14:53:12,105   In file included from /usr/include/c++/12/vector:64:
2023-12-07T14:53:12,105   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-07T14:53:12,106       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20760:32,
2023-12-07T14:53:12,107       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-07T14:53:12,107   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T14:53:12,108    1287 |           _M_realloc_insert(end(), __x);
2023-12-07T14:53:12,108         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T14:53:12,109   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-07T14:53:12,109       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20774:33,
2023-12-07T14:53:12,110       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-07T14:53:12,111   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T14:53:12,111    1287 |           _M_realloc_insert(end(), __x);
2023-12-07T14:53:12,112         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T14:53:12,113   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-07T14:53:12,114       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20859:34,
2023-12-07T14:53:12,115       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-07T14:53:12,115   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T14:53:12,116    1287 |           _M_realloc_insert(end(), __x);
2023-12-07T14:53:12,117         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T14:53:14,486   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-12-07T14:53:14,876   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-07T14:53:14,877   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.14'
2023-12-07T14:53:14,877   installing to build/bdist.linux-armv7l/wheel
2023-12-07T14:53:14,878   running install
2023-12-07T14:53:14,901   running install_lib
2023-12-07T14:53:14,907   creating build/bdist.linux-armv7l
2023-12-07T14:53:14,908   creating build/bdist.linux-armv7l/wheel
2023-12-07T14:53:14,910   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:14,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:14,913   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,914   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,916   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,919   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,921   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,928   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,930   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,938   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,940   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,942   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T14:53:14,948   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-07T14:53:14,949   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T14:53:14,950   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T14:53:14,953   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T14:53:14,956   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T14:53:14,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T14:53:14,960   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-07T14:53:14,962   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T14:53:14,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T14:53:14,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T14:53:14,967   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T14:53:14,969   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T14:53:14,971   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T14:53:14,972   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T14:53:14,974   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T14:53:14,977   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T14:53:14,977   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T14:53:14,998   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T14:53:15,000   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,023   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,025   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,027   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,047   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T14:53:15,048   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T14:53:15,251   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-07T14:53:15,252   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-07T14:53:15,255   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T14:53:15,257   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T14:53:15,259   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-12-07T14:53:15,264   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,265   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,267   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,270   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,272   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,273   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,275   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,278   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,279   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,282   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,284   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,286   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,288   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,290   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,292   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,295   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,297   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,299   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,301   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,303   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,305   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,307   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,309   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,311   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,313   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,316   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,318   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,320   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,322   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,325   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,327   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,329   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,331   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,333   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,335   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,337   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,341   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,344   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,346   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,348   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,350   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,352   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,355   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,357   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,359   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,361   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,363   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,365   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,367   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,374   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,376   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,396   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,424   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,430   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,478   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,488   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T14:53:15,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,500   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,502   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,507   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,509   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,511   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,516   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,518   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,520   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,522   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,526   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,540   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,542   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,544   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,555   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,561   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,571   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,579   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,591   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,593   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,595   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,602   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,604   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,606   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,608   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,614   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,616   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T14:53:15,622   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T14:53:15,623   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T14:53:15,625   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T14:53:15,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T14:53:15,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T14:53:15,631   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T14:53:15,632   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T14:53:15,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T14:53:15,657   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T14:53:15,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T14:53:15,662   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T14:53:15,664   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T14:53:15,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,669   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,696   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T14:53:15,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T14:53:15,699   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T14:53:15,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,722   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T14:53:15,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T14:53:15,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T14:53:15,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,751   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T14:53:15,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T14:53:15,754   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-07T14:53:15,755   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-07T14:53:15,761   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-07T14:53:15,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-07T14:53:15,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T14:53:15,783   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T14:53:15,785   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,787   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,793   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T14:53:15,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T14:53:15,796   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T14:53:15,797   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T14:53:15,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T14:53:15,802   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T14:53:15,805   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T14:53:15,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T14:53:15,808   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T14:53:15,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T14:53:15,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T14:53:15,814   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T14:53:15,833   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T14:53:15,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T14:53:15,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T14:53:15,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,856   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,916   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,917   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,919   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T14:53:15,920   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T14:53:15,922   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T14:53:15,924   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,926   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,929   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,932   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,934   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,936   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,939   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,941   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,943   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,945   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,947   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,949   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T14:53:15,952   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,953   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:15,957   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,002   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,004   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,006   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,008   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,027   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,028   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,030   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,051   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,073   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T14:53:16,074   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T14:53:16,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T14:53:16,100   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,147   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T14:53:16,150   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T14:53:16,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T14:53:16,153   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T14:53:16,173   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T14:53:16,174   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T14:53:16,176   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T14:53:16,197   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T14:53:16,198   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T14:53:16,200   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T14:53:16,223   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,226   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,229   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,232   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,234   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,236   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T14:53:16,238   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T14:53:16,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T14:53:16,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T14:53:16,242   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T14:53:16,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T14:53:16,247   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,249   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,251   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T14:53:16,252   running install_egg_info
2023-12-07T14:53:16,258   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.14-py3.11.egg-info
2023-12-07T14:53:16,270   running install_scripts
2023-12-07T14:53:16,321   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.14.dist-info/WHEEL
2023-12-07T14:53:16,324   creating '/tmp/pip-wheel-ki7nczlx/.tmp-v5n0h983/moleculekit-1.8.14-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-07T14:53:16,327   adding 'moleculekit/__init__.py'
2023-12-07T14:53:16,328   adding 'moleculekit/_version.py'
2023-12-07T14:53:16,330   adding 'moleculekit/align.py'
2023-12-07T14:53:16,650   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:16,661   adding 'moleculekit/bondguesser.py'
2023-12-07T14:53:16,912   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:16,921   adding 'moleculekit/config.py'
2023-12-07T14:53:16,922   adding 'moleculekit/dihedral.py'
2023-12-07T14:53:16,924   adding 'moleculekit/distance.py'
2023-12-07T14:53:17,235   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:17,246   adding 'moleculekit/home.py'
2023-12-07T14:53:17,247   adding 'moleculekit/logging.ini'
2023-12-07T14:53:17,261   adding 'moleculekit/molecule.py'
2023-12-07T14:53:17,490   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:17,498   adding 'moleculekit/opm.py'
2023-12-07T14:53:17,501   adding 'moleculekit/periodictable.py'
2023-12-07T14:53:17,502   adding 'moleculekit/pymolgraphics.py'
2023-12-07T14:53:17,503   adding 'moleculekit/rcsb.py'
2023-12-07T14:53:17,505   adding 'moleculekit/rdkitintegration.py'
2023-12-07T14:53:17,517   adding 'moleculekit/readers.py'
2023-12-07T14:53:18,120   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:18,142   adding 'moleculekit/util.py'
2023-12-07T14:53:18,143   adding 'moleculekit/version.py'
2023-12-07T14:53:18,145   adding 'moleculekit/viewer.py'
2023-12-07T14:53:18,146   adding 'moleculekit/vmd_wrapper'
2023-12-07T14:53:18,148   adding 'moleculekit/vmdgraphics.py'
2023-12-07T14:53:18,150   adding 'moleculekit/vmdviewer.py'
2023-12-07T14:53:18,403   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:18,416   adding 'moleculekit/writers.py'
2023-12-07T14:53:18,676   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:18,685   adding 'moleculekit/atomselect/__init__.py'
2023-12-07T14:53:18,686   adding 'moleculekit/atomselect/analyze.py'
2023-12-07T14:53:18,688   adding 'moleculekit/atomselect/atomselect.py'
2023-12-07T14:53:18,690   adding 'moleculekit/atomselect/languageparser.py'
2023-12-07T14:53:18,793   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-12-07T14:53:18,804   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-12-07T14:53:18,894   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-12-07T14:53:18,903   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-12-07T14:53:19,003   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-12-07T14:53:19,013   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-12-07T14:53:19,015   adding 'moleculekit/interactions/__init__.py'
2023-12-07T14:53:19,301   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:19,566   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:19,577   adding 'moleculekit/interactions/interactions.py'
2023-12-07T14:53:19,854   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:20,138   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-12-07T14:53:20,237   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-12-07T14:53:20,247   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-12-07T14:53:20,339   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-12-07T14:53:20,349   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-12-07T14:53:20,444   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-12-07T14:53:20,453   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-12-07T14:53:20,544   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-12-07T14:53:20,553   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-12-07T14:53:20,640   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-12-07T14:53:20,648   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-12-07T14:53:20,650   adding 'moleculekit/pdbx/__init__.py'
2023-12-07T14:53:20,653   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-12-07T14:53:20,656   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-12-07T14:53:20,658   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-12-07T14:53:20,660   adding 'moleculekit/pdbx/reader/__init__.py'
2023-12-07T14:53:20,662   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-12-07T14:53:20,663   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-12-07T14:53:20,665   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-12-07T14:53:20,666   adding 'moleculekit/pdbx/tests/__init__.py'
2023-12-07T14:53:20,668   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-12-07T14:53:20,669   adding 'moleculekit/pdbx/writer/__init__.py'
2023-12-07T14:53:20,671   adding 'moleculekit/ply/__init__.py'
2023-12-07T14:53:20,675   adding 'moleculekit/ply/lex.py'
2023-12-07T14:53:20,686   adding 'moleculekit/ply/yacc.py'
2023-12-07T14:53:20,689   adding 'moleculekit/projections/__init__.py'
2023-12-07T14:53:20,691   adding 'moleculekit/projections/metriccoordinate.py'
2023-12-07T14:53:20,694   adding 'moleculekit/projections/metricdihedral.py'
2023-12-07T14:53:20,698   adding 'moleculekit/projections/metricdistance.py'
2023-12-07T14:53:20,700   adding 'moleculekit/projections/metricfluctuation.py'
2023-12-07T14:53:20,702   adding 'moleculekit/projections/metricgyration.py'
2023-12-07T14:53:20,705   adding 'moleculekit/projections/metricplumed2.py'
2023-12-07T14:53:20,707   adding 'moleculekit/projections/metricrmsd.py'
2023-12-07T14:53:20,709   adding 'moleculekit/projections/metricsasa.py'
2023-12-07T14:53:20,711   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-12-07T14:53:20,713   adding 'moleculekit/projections/metricshell.py'
2023-12-07T14:53:20,714   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-12-07T14:53:20,716   adding 'moleculekit/projections/metrictmscore.py'
2023-12-07T14:53:20,717   adding 'moleculekit/projections/projection.py'
2023-12-07T14:53:20,718   adding 'moleculekit/projections/util.py'
2023-12-07T14:53:20,721   adding 'moleculekit/share/ALA.cif'
2023-12-07T14:53:20,722   adding 'moleculekit/share/backbone.cif'
2023-12-07T14:53:22,030   adding 'moleculekit/share/opm_sequences.json'
2023-12-07T14:53:22,115   adding 'moleculekit/share/atomselect/atomselect.json'
2023-12-07T14:53:22,120   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-12-07T14:53:22,121   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-12-07T14:53:22,122   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-12-07T14:53:22,123   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-12-07T14:53:22,125   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-12-07T14:53:22,126   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-12-07T14:53:22,127   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-12-07T14:53:22,128   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-12-07T14:53:22,130   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-12-07T14:53:22,131   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-12-07T14:53:22,132   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-12-07T14:53:22,133   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-12-07T14:53:22,134   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-12-07T14:53:22,136   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-12-07T14:53:22,137   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-12-07T14:53:22,138   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-12-07T14:53:22,139   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-12-07T14:53:22,140   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-12-07T14:53:22,142   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-12-07T14:53:22,143   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-12-07T14:53:22,144   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-12-07T14:53:22,145   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-12-07T14:53:22,147   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-12-07T14:53:22,148   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-12-07T14:53:22,149   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-12-07T14:53:22,151   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-12-07T14:53:22,152   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-12-07T14:53:22,153   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-12-07T14:53:22,155   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-12-07T14:53:22,156   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-12-07T14:53:22,157   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-12-07T14:53:22,158   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-12-07T14:53:22,159   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-12-07T14:53:22,161   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-12-07T14:53:22,162   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-12-07T14:53:22,163   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-12-07T14:53:22,164   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-12-07T14:53:22,166   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-12-07T14:53:22,167   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-12-07T14:53:22,168   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-12-07T14:53:22,169   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-12-07T14:53:22,171   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-12-07T14:53:22,172   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-12-07T14:53:22,173   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-12-07T14:53:22,175   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-12-07T14:53:22,176   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-12-07T14:53:22,177   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-12-07T14:53:22,178   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-12-07T14:53:22,179   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-12-07T14:53:22,180   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-12-07T14:53:22,181   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-12-07T14:53:22,183   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-12-07T14:53:22,184   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-12-07T14:53:22,185   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-12-07T14:53:22,186   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-12-07T14:53:22,187   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-12-07T14:53:22,188   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-12-07T14:53:22,190   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-12-07T14:53:22,191   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-12-07T14:53:22,192   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-12-07T14:53:22,193   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-12-07T14:53:22,194   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-12-07T14:53:22,196   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-12-07T14:53:22,197   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-12-07T14:53:22,198   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-12-07T14:53:22,199   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-12-07T14:53:22,201   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-12-07T14:53:22,202   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-12-07T14:53:22,203   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-12-07T14:53:22,204   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-12-07T14:53:22,206   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-12-07T14:53:22,207   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-12-07T14:53:22,208   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-12-07T14:53:22,209   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-12-07T14:53:22,210   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-12-07T14:53:22,211   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-12-07T14:53:22,213   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-12-07T14:53:22,214   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-12-07T14:53:22,215   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-12-07T14:53:22,216   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-12-07T14:53:22,218   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-12-07T14:53:22,219   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-12-07T14:53:22,220   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-12-07T14:53:22,221   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-12-07T14:53:22,223   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-12-07T14:53:22,224   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-12-07T14:53:22,225   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-12-07T14:53:22,227   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-12-07T14:53:22,228   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-12-07T14:53:22,229   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-12-07T14:53:22,230   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-12-07T14:53:22,232   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-12-07T14:53:22,233   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-12-07T14:53:22,234   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-12-07T14:53:22,235   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-12-07T14:53:22,236   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-12-07T14:53:22,238   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-12-07T14:53:22,239   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-12-07T14:53:22,240   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-12-07T14:53:22,241   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-12-07T14:53:22,242   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-12-07T14:53:22,243   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-12-07T14:53:22,244   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-12-07T14:53:22,245   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-12-07T14:53:22,247   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-12-07T14:53:22,248   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-12-07T14:53:22,249   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-12-07T14:53:22,250   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-12-07T14:53:22,251   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-12-07T14:53:22,252   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-12-07T14:53:22,254   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-12-07T14:53:22,255   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-12-07T14:53:22,256   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-12-07T14:53:22,257   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-12-07T14:53:22,258   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-12-07T14:53:22,259   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-12-07T14:53:22,261   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-12-07T14:53:22,262   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-12-07T14:53:22,263   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-12-07T14:53:22,264   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-12-07T14:53:22,265   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-12-07T14:53:22,267   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-12-07T14:53:22,268   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-12-07T14:53:22,269   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-12-07T14:53:22,270   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-12-07T14:53:22,271   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-12-07T14:53:22,273   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-12-07T14:53:22,274   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-12-07T14:53:22,275   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-12-07T14:53:22,276   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-12-07T14:53:22,277   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-12-07T14:53:22,279   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-12-07T14:53:22,280   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-12-07T14:53:22,281   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-12-07T14:53:22,282   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-12-07T14:53:22,283   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-12-07T14:53:22,285   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-12-07T14:53:22,286   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-12-07T14:53:22,287   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-12-07T14:53:22,288   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-12-07T14:53:22,290   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-12-07T14:53:22,291   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-12-07T14:53:22,292   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-12-07T14:53:22,293   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-12-07T14:53:22,295   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-12-07T14:53:22,296   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-12-07T14:53:22,297   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-12-07T14:53:22,298   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-12-07T14:53:22,299   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-12-07T14:53:22,300   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-12-07T14:53:22,302   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-12-07T14:53:22,303   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-12-07T14:53:22,304   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-12-07T14:53:22,305   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-12-07T14:53:22,306   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-12-07T14:53:22,307   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-12-07T14:53:22,309   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-12-07T14:53:22,310   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-12-07T14:53:22,311   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-12-07T14:53:22,312   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-12-07T14:53:22,313   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-12-07T14:53:22,315   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-12-07T14:53:22,316   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-12-07T14:53:22,317   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-12-07T14:53:22,318   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-12-07T14:53:22,319   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-12-07T14:53:22,320   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-12-07T14:53:22,322   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-12-07T14:53:22,323   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-12-07T14:53:22,324   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-12-07T14:53:22,325   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-12-07T14:53:22,326   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-12-07T14:53:22,328   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-12-07T14:53:22,329   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-12-07T14:53:22,330   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-12-07T14:53:22,332   adding 'moleculekit/smallmol/__init__.py'
2023-12-07T14:53:22,337   adding 'moleculekit/smallmol/smallmol.py'
2023-12-07T14:53:22,340   adding 'moleculekit/smallmol/smallmollib.py'
2023-12-07T14:53:22,341   adding 'moleculekit/smallmol/test_smallmol.py'
2023-12-07T14:53:22,343   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-12-07T14:53:22,345   adding 'moleculekit/smallmol/util.py'
2023-12-07T14:53:22,347   adding 'moleculekit/smallmol/tools/__init__.py'
2023-12-07T14:53:22,349   adding 'moleculekit/smallmol/tools/clustering.py'
2023-12-07T14:53:22,350   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-12-07T14:53:22,352   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-12-07T14:53:22,441   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-12-07T14:53:22,449   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-12-07T14:53:22,451   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-12-07T14:53:22,452   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-12-07T14:53:22,470   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-12-07T14:53:22,473   adding 'moleculekit/tools/__init__.py'
2023-12-07T14:53:22,475   adding 'moleculekit/tools/atomtyper.py'
2023-12-07T14:53:22,477   adding 'moleculekit/tools/autosegment.py'
2023-12-07T14:53:22,479   adding 'moleculekit/tools/crystalpacking.py'
2023-12-07T14:53:22,483   adding 'moleculekit/tools/detect.py'
2023-12-07T14:53:22,485   adding 'moleculekit/tools/docking.py'
2023-12-07T14:53:22,486   adding 'moleculekit/tools/graphalignment.py'
2023-12-07T14:53:22,488   adding 'moleculekit/tools/hhblitsprofile.py'
2023-12-07T14:53:22,490   adding 'moleculekit/tools/moleculechecks.py'
2023-12-07T14:53:22,496   adding 'moleculekit/tools/preparation.py'
2023-12-07T14:53:22,498   adding 'moleculekit/tools/preparation_customres.py'
2023-12-07T14:53:22,500   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-12-07T14:53:22,503   adding 'moleculekit/tools/voxeldescriptors.py'
2023-12-07T14:53:22,505   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-12-07T14:53:22,506   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-12-07T14:53:22,597   adding 'moleculekit/wrapping/wrapping.cpp'
2023-12-07T14:53:22,606   adding 'moleculekit/wrapping/wrapping.pyx'
2023-12-07T14:53:22,695   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-12-07T14:53:22,704   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-12-07T14:53:22,705   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-12-07T14:53:22,708   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-12-07T14:53:22,710   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-12-07T14:53:22,711   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-12-07T14:53:22,719   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-12-07T14:53:22,721   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-12-07T14:53:22,723   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-12-07T14:53:22,725   adding 'moleculekit-1.8.14.dist-info/LICENSE'
2023-12-07T14:53:22,726   adding 'moleculekit-1.8.14.dist-info/METADATA'
2023-12-07T14:53:22,727   adding 'moleculekit-1.8.14.dist-info/WHEEL'
2023-12-07T14:53:22,728   adding 'moleculekit-1.8.14.dist-info/top_level.txt'
2023-12-07T14:53:22,733   adding 'moleculekit-1.8.14.dist-info/RECORD'
2023-12-07T14:53:22,870   removing build/bdist.linux-armv7l/wheel
2023-12-07T14:53:23,154   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-12-07T14:53:23,426   Created wheel for moleculekit: filename=moleculekit-1.8.14-cp311-cp311-linux_armv7l.whl size=12912032 sha256=8629ac0797c90996eccc556595395a73f694a991add5f87b742e90afa9657440
2023-12-07T14:53:23,428   Stored in directory: /tmp/pip-ephem-wheel-cache-xlh6w5nn/wheels/e4/49/4c/a1ec3c8f08effa6023766f66d7f33926bf609568c952bb9c4c
2023-12-07T14:53:23,452 Successfully built moleculekit
2023-12-07T14:53:23,757 Removed build tracker: '/tmp/pip-build-tracker-9e4qlpfy'