2023-12-07T16:59:34,775 Created temporary directory: /tmp/pip-build-tracker-1xy0rhww
2023-12-07T16:59:34,777 Initialized build tracking at /tmp/pip-build-tracker-1xy0rhww
2023-12-07T16:59:34,777 Created build tracker: /tmp/pip-build-tracker-1xy0rhww
2023-12-07T16:59:34,777 Entered build tracker: /tmp/pip-build-tracker-1xy0rhww
2023-12-07T16:59:34,777 Created temporary directory: /tmp/pip-wheel-f0ei9ppu
2023-12-07T16:59:34,781 Created temporary directory: /tmp/pip-ephem-wheel-cache-f1gx33dl
2023-12-07T16:59:34,805 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-07T16:59:34,809 2 location(s) to search for versions of moleculekit:
2023-12-07T16:59:34,809 * https://pypi.org/simple/moleculekit/
2023-12-07T16:59:34,809 * https://www.piwheels.org/simple/moleculekit/
2023-12-07T16:59:34,809 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-12-07T16:59:34,810 Getting page https://pypi.org/simple/moleculekit/
2023-12-07T16:59:34,811 Found index url https://pypi.org/simple/
2023-12-07T16:59:34,866 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-12-07T16:59:34,906   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,906   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-12-07T16:59:34,907   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,907   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-12-07T16:59:34,907   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,907   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-12-07T16:59:34,908   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,908   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-12-07T16:59:34,908   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,908   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-12-07T16:59:34,909   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,909   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-12-07T16:59:34,909   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,909   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-12-07T16:59:34,910   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,910   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-12-07T16:59:34,910   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,910   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-12-07T16:59:34,911   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,911   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-12-07T16:59:34,911   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,911   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-12-07T16:59:34,912   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,912   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-12-07T16:59:34,912   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,912   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-12-07T16:59:34,913   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,913   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-12-07T16:59:34,913   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,913   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-12-07T16:59:34,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,914   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-12-07T16:59:34,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,914   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-12-07T16:59:34,914   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,915   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-12-07T16:59:34,915   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,915   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-12-07T16:59:34,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,916   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-12-07T16:59:34,916   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,916   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-12-07T16:59:34,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,917   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-12-07T16:59:34,917   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,917   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-12-07T16:59:34,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,918   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-12-07T16:59:34,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,918   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-12-07T16:59:34,918   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,919   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-12-07T16:59:34,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,919   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-12-07T16:59:34,919   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,920   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-12-07T16:59:34,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,920   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-12-07T16:59:34,920   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,921   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-12-07T16:59:34,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,921   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-12-07T16:59:34,921   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,922   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-12-07T16:59:34,922   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-07T16:59:34,922   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-12-07T16:59:34,965   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-12-07T16:59:34,966   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-12-07T16:59:34,966   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-12-07T16:59:34,967   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-12-07T16:59:34,967   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-12-07T16:59:34,968   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-12-07T16:59:34,968   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-12-07T16:59:34,969   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-12-07T16:59:34,969   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-12-07T16:59:34,970   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-12-07T16:59:34,971   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-12-07T16:59:34,971   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-12-07T16:59:34,972   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-12-07T16:59:34,972   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-12-07T16:59:34,973   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-12-07T16:59:34,973   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-12-07T16:59:34,974   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-12-07T16:59:34,974   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-12-07T16:59:34,975   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-12-07T16:59:34,975   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-12-07T16:59:34,976   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-12-07T16:59:34,977   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-12-07T16:59:34,977   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-12-07T16:59:34,978   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2023-12-07T16:59:34,978   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2023-12-07T16:59:34,979 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-12-07T16:59:34,979 Getting page https://www.piwheels.org/simple/moleculekit/
2023-12-07T16:59:34,980 Found index url https://www.piwheels.org/simple/
2023-12-07T16:59:35,063 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-12-07T16:59:35,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,171   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,172   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,173   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,174   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,175   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,175   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,175   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,175   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,176   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,177   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,177   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,177   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,177   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,177   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,178   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,178   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,178   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,178   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,178   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,179   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,179   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,179   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,179   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,179   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,180   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,181   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,181   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,181   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,181   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,181   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,182   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,182   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,182   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-07T16:59:35,182   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T16:59:35,192   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-07T16:59:35,199 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-12-07T16:59:35,199 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-12-07T16:59:35,240 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-12-07T16:59:35,258 Collecting moleculekit==1.8.14
2023-12-07T16:59:35,260   Created temporary directory: /tmp/pip-unpack-zxmyv3lz
2023-12-07T16:59:35,312   Downloading moleculekit-1.8.14.tar.gz (6.2 MB)
2023-12-07T16:59:37,323   Added moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz to build tracker '/tmp/pip-build-tracker-1xy0rhww'
2023-12-07T16:59:37,331   Created temporary directory: /tmp/pip-build-env-j10sna_x
2023-12-07T16:59:37,341   Installing build dependencies: started
2023-12-07T16:59:37,342   Running command pip subprocess to install build dependencies
2023-12-07T16:59:38,978   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-12-07T16:59:39,551   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-07T16:59:40,973   Collecting setuptools
2023-12-07T16:59:40,988     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-07T16:59:41,951   Collecting numpy>=1.18.5
2023-12-07T16:59:41,967     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-12-07T16:59:43,709   Collecting Cython>=0.29.21
2023-12-07T16:59:43,727     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.6-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-12-07T16:59:44,104   Collecting toml
2023-12-07T16:59:44,131     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-12-07T16:59:44,306   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-12-07T16:59:44,323     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-12-07T16:59:44,451   Collecting tomli (from versioneer[toml]==0.28)
2023-12-07T16:59:44,466     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-12-07T16:59:46,496   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-12-07T16:59:46,532     Creating /tmp/pip-build-env-j10sna_x/overlay/bin
2023-12-07T16:59:46,534     changing mode of /tmp/pip-build-env-j10sna_x/overlay/bin/versioneer to 755
2023-12-07T16:59:56,291     changing mode of /tmp/pip-build-env-j10sna_x/overlay/bin/f2py to 755
2023-12-07T16:59:59,930     changing mode of /tmp/pip-build-env-j10sna_x/overlay/bin/cygdb to 755
2023-12-07T16:59:59,932     changing mode of /tmp/pip-build-env-j10sna_x/overlay/bin/cython to 755
2023-12-07T16:59:59,934     changing mode of /tmp/pip-build-env-j10sna_x/overlay/bin/cythonize to 755
2023-12-07T16:59:59,959   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-12-07T16:59:59,959   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.2 which is incompatible.
2023-12-07T16:59:59,960   Successfully installed Cython-3.0.6 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-12-07T17:00:00,140   WARNING: There was an error checking the latest version of pip.
2023-12-07T17:00:00,565   Installing build dependencies: finished with status 'done'
2023-12-07T17:00:00,570   Getting requirements to build wheel: started
2023-12-07T17:00:00,571   Running command Getting requirements to build wheel
2023-12-07T17:00:34,100   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-12-07T17:00:39,964   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,964   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,965   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,965   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,965   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,965   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,965   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,966   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,966   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,966   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-12-07T17:00:39,966   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-07T17:00:39,966   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-12-07T17:00:39,966   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-12-07T17:00:39,966   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-12-07T17:00:39,967   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-12-07T17:00:39,967   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-12-07T17:00:39,967   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-12-07T17:00:39,967   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-12-07T17:00:39,967   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-12-07T17:00:39,967   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-12-07T17:00:39,967   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-12-07T17:00:39,968   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-12-07T17:00:40,257   running egg_info
2023-12-07T17:00:40,264   writing moleculekit.egg-info/PKG-INFO
2023-12-07T17:00:40,267   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-07T17:00:40,269   writing requirements to moleculekit.egg-info/requires.txt
2023-12-07T17:00:40,270   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-07T17:00:40,300   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,301   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,302   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,303   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,304   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,304   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:40,304   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-07T17:00:41,811   Running command pip subprocess to install backend dependencies
2023-12-07T17:00:43,148   Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
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2023-12-07T17:00:44,061   Collecting wheel
2023-12-07T17:00:44,077     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
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2023-12-07T17:00:45,903     Creating /tmp/pip-build-env-j10sna_x/normal/bin
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2023-12-07T17:00:46,319   Created temporary directory: /tmp/pip-modern-metadata-_dxn82ad
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2023-12-07T17:00:48,786   reading manifest file '/tmp/pip-modern-metadata-_dxn82ad/moleculekit.egg-info/SOURCES.txt'
2023-12-07T17:00:48,788   reading manifest template 'MANIFEST.in'
2023-12-07T17:00:49,035   no previously-included directories found matching 'moleculekit/test-data'
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2023-12-07T17:00:49,037   adding license file 'LICENSE'
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2023-12-07T17:00:49,059   creating '/tmp/pip-modern-metadata-_dxn82ad/moleculekit-1.8.14.dist-info'
2023-12-07T17:00:49,256   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-07T17:00:49,263   Source in /tmp/pip-wheel-f0ei9ppu/moleculekit_c7f0b5d6ef0e4a67bea14dbb92e4db84 has version 1.8.14, which satisfies requirement moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz
2023-12-07T17:00:49,264   Removed moleculekit==1.8.14 from https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz from build tracker '/tmp/pip-build-tracker-1xy0rhww'
2023-12-07T17:00:49,270 Created temporary directory: /tmp/pip-unpack-rs0c8t72
2023-12-07T17:00:49,270 Created temporary directory: /tmp/pip-unpack-d853m2b5
2023-12-07T17:00:49,279 Building wheels for collected packages: moleculekit
2023-12-07T17:00:49,284   Created temporary directory: /tmp/pip-wheel-pluolcl1
2023-12-07T17:00:49,284   Destination directory: /tmp/pip-wheel-pluolcl1
2023-12-07T17:00:49,286   Building wheel for moleculekit (pyproject.toml): started
2023-12-07T17:00:49,287   Running command Building wheel for moleculekit (pyproject.toml)
2023-12-07T17:00:51,517   running bdist_wheel
2023-12-07T17:00:51,533   running build
2023-12-07T17:00:51,533   running build_py
2023-12-07T17:00:51,541   creating build
2023-12-07T17:00:51,541   creating build/lib.linux-armv7l-cpython-39
2023-12-07T17:00:51,542   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,543   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,545   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,547   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,548   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,550   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,553   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,555   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,560   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,564   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,567   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,568   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,570   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,572   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,574   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,575   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,577   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,579   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,581   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,583   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,585   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,587   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:51,589   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,590   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,593   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,595   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,597   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,599   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,602   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,604   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,606   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,608   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,610   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,612   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,614   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,616   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-07T17:00:51,620   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-07T17:00:51,621   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-07T17:00:51,622   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-07T17:00:51,626   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-07T17:00:51,626   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-07T17:00:51,629   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-07T17:00:51,631   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-07T17:00:51,632   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-07T17:00:51,635   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-07T17:00:51,635   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-07T17:00:51,641   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-07T17:00:51,642   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-07T17:00:51,645   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-12-07T17:00:51,646   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-12-07T17:00:51,648   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,649   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,651   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,654   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,656   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,658   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,660   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-07T17:00:51,663   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,664   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,667   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,669   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,671   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,673   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,675   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,678   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,680   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,682   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,684   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,686   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,687   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,689   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,691   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,693   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-07T17:00:51,696   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-07T17:00:51,697   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-07T17:00:51,699   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-07T17:00:51,701   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-07T17:00:51,702   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-07T17:00:51,704   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-07T17:00:51,706   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-07T17:00:51,707   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-07T17:00:51,709   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-07T17:00:51,710   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-07T17:00:51,712   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-07T17:00:51,715   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-07T17:00:51,716   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-07T17:00:51,719   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-07T17:00:51,720   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-07T17:00:51,722   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-07T17:00:51,724   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-07T17:00:51,725   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-07T17:00:51,727   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-07T17:00:51,728   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-07T17:00:51,731   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-07T17:00:51,732   running egg_info
2023-12-07T17:00:51,738   writing moleculekit.egg-info/PKG-INFO
2023-12-07T17:00:51,740   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-07T17:00:51,742   writing requirements to moleculekit.egg-info/requires.txt
2023-12-07T17:00:51,743   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-07T17:00:51,760   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,761   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,762   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,763   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,764   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,765   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,766   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,767   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,768   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,768   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,768   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,768   dependency /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-07T17:00:51,773   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-07T17:00:51,782   reading manifest template 'MANIFEST.in'
2023-12-07T17:00:51,992   no previously-included directories found matching 'moleculekit/test-data'
2023-12-07T17:00:51,993   no previously-included directories found matching 'moleculekit/tests'
2023-12-07T17:00:51,994   no previously-included directories found matching 'package'
2023-12-07T17:00:51,994   adding license file 'LICENSE'
2023-12-07T17:00:52,011   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-07T17:00:52,021   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-12-07T17:00:52,021   !!

2023-12-07T17:00:52,021           ********************************************************************************
2023-12-07T17:00:52,022           ############################
2023-12-07T17:00:52,022           # Package would be ignored #
2023-12-07T17:00:52,022           ############################
2023-12-07T17:00:52,022           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-12-07T17:00:52,022           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,022           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,022           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-12-07T17:00:52,023           to the `packages` configuration field.

2023-12-07T17:00:52,023           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,023           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,023           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,023           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,024           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-12-07T17:00:52,024           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-12-07T17:00:52,024           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,024           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,024           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,024           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,025           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,025           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,025                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,025                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,025                 directory, all directories are treated like packages.
2023-12-07T17:00:52,026           ********************************************************************************

2023-12-07T17:00:52,026   !!
2023-12-07T17:00:52,026     check.warn(importable)
2023-12-07T17:00:52,026   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-12-07T17:00:52,026   !!

2023-12-07T17:00:52,027           ********************************************************************************
2023-12-07T17:00:52,027           ############################
2023-12-07T17:00:52,027           # Package would be ignored #
2023-12-07T17:00:52,027           ############################
2023-12-07T17:00:52,027           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-12-07T17:00:52,027           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,027           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,028           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-12-07T17:00:52,028           to the `packages` configuration field.

2023-12-07T17:00:52,028           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,028           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,028           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,028           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,029           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,029           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-12-07T17:00:52,029           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-12-07T17:00:52,029           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,029           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,029           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,029           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,030           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,030           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,030                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,030                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,030                 directory, all directories are treated like packages.
2023-12-07T17:00:52,030           ********************************************************************************

2023-12-07T17:00:52,031   !!
2023-12-07T17:00:52,031     check.warn(importable)
2023-12-07T17:00:52,031   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-12-07T17:00:52,031   !!

2023-12-07T17:00:52,031           ********************************************************************************
2023-12-07T17:00:52,031           ############################
2023-12-07T17:00:52,031           # Package would be ignored #
2023-12-07T17:00:52,032           ############################
2023-12-07T17:00:52,032           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-12-07T17:00:52,032           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,032           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,032           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-12-07T17:00:52,032           to the `packages` configuration field.

2023-12-07T17:00:52,032           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,033           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,033           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,033           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,033           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,033           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-12-07T17:00:52,034           already explicitly excluding 'moleculekit.distance_utils' via
2023-12-07T17:00:52,034           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,034           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,034           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,034           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,034           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,035           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,035                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,035                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,035                 directory, all directories are treated like packages.
2023-12-07T17:00:52,035           ********************************************************************************

2023-12-07T17:00:52,035   !!
2023-12-07T17:00:52,035     check.warn(importable)
2023-12-07T17:00:52,036   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-12-07T17:00:52,036   !!

2023-12-07T17:00:52,036           ********************************************************************************
2023-12-07T17:00:52,036           ############################
2023-12-07T17:00:52,036           # Package would be ignored #
2023-12-07T17:00:52,036           ############################
2023-12-07T17:00:52,036           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-12-07T17:00:52,036           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,037           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,037           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-12-07T17:00:52,037           to the `packages` configuration field.

2023-12-07T17:00:52,037           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,037           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,037           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,038           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,038           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,038           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-12-07T17:00:52,038           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-12-07T17:00:52,038           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,038           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,039           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,039           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,039           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,039           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,039                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,040                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,040                 directory, all directories are treated like packages.
2023-12-07T17:00:52,040           ********************************************************************************

2023-12-07T17:00:52,040   !!
2023-12-07T17:00:52,040     check.warn(importable)
2023-12-07T17:00:52,040   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-12-07T17:00:52,040   !!

2023-12-07T17:00:52,041           ********************************************************************************
2023-12-07T17:00:52,041           ############################
2023-12-07T17:00:52,041           # Package would be ignored #
2023-12-07T17:00:52,041           ############################
2023-12-07T17:00:52,041           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-12-07T17:00:52,041           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,041           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,041           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-12-07T17:00:52,042           to the `packages` configuration field.

2023-12-07T17:00:52,042           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,042           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,042           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,042           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,042           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,043           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-12-07T17:00:52,043           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-12-07T17:00:52,043           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,043           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,043           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,043           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,044           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,044           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,044                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,044                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,044                 directory, all directories are treated like packages.
2023-12-07T17:00:52,044           ********************************************************************************

2023-12-07T17:00:52,045   !!
2023-12-07T17:00:52,045     check.warn(importable)
2023-12-07T17:00:52,045   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-12-07T17:00:52,045   !!

2023-12-07T17:00:52,045           ********************************************************************************
2023-12-07T17:00:52,045           ############################
2023-12-07T17:00:52,046           # Package would be ignored #
2023-12-07T17:00:52,046           ############################
2023-12-07T17:00:52,046           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-12-07T17:00:52,046           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,046           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,046           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-12-07T17:00:52,047           to the `packages` configuration field.

2023-12-07T17:00:52,047           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,047           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,047           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,047           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,047           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,048           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-12-07T17:00:52,048           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-12-07T17:00:52,048           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,048           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,048           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,048           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,049           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,049           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,049                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,049                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,049                 directory, all directories are treated like packages.
2023-12-07T17:00:52,049           ********************************************************************************

2023-12-07T17:00:52,050   !!
2023-12-07T17:00:52,050     check.warn(importable)
2023-12-07T17:00:52,050   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-12-07T17:00:52,050   !!

2023-12-07T17:00:52,050           ********************************************************************************
2023-12-07T17:00:52,050           ############################
2023-12-07T17:00:52,050           # Package would be ignored #
2023-12-07T17:00:52,050           ############################
2023-12-07T17:00:52,051           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-12-07T17:00:52,051           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,051           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,051           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-12-07T17:00:52,051           to the `packages` configuration field.

2023-12-07T17:00:52,051           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,051           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,052           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,052           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,052           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,052           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-12-07T17:00:52,052           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-12-07T17:00:52,052           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,052           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,053           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,053           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,053           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,053           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,053                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,054                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,054                 directory, all directories are treated like packages.
2023-12-07T17:00:52,054           ********************************************************************************

2023-12-07T17:00:52,054   !!
2023-12-07T17:00:52,054     check.warn(importable)
2023-12-07T17:00:52,054   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-12-07T17:00:52,054   !!

2023-12-07T17:00:52,055           ********************************************************************************
2023-12-07T17:00:52,055           ############################
2023-12-07T17:00:52,055           # Package would be ignored #
2023-12-07T17:00:52,055           ############################
2023-12-07T17:00:52,055           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-12-07T17:00:52,055           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,055           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,055           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-12-07T17:00:52,056           to the `packages` configuration field.

2023-12-07T17:00:52,056           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,056           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,056           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,056           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,056           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,057           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-12-07T17:00:52,057           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-12-07T17:00:52,057           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,057           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,057           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,057           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,058           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,058           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,058                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,058                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,058                 directory, all directories are treated like packages.
2023-12-07T17:00:52,058           ********************************************************************************

2023-12-07T17:00:52,059   !!
2023-12-07T17:00:52,059     check.warn(importable)
2023-12-07T17:00:52,059   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-12-07T17:00:52,059   !!

2023-12-07T17:00:52,059           ********************************************************************************
2023-12-07T17:00:52,059           ############################
2023-12-07T17:00:52,059           # Package would be ignored #
2023-12-07T17:00:52,059           ############################
2023-12-07T17:00:52,060           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-12-07T17:00:52,060           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,060           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,060           package, please make sure that 'moleculekit.share' is explicitly added
2023-12-07T17:00:52,060           to the `packages` configuration field.

2023-12-07T17:00:52,060           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,060           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,060           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,061           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,061           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,061           If you don't want 'moleculekit.share' to be distributed and are
2023-12-07T17:00:52,061           already explicitly excluding 'moleculekit.share' via
2023-12-07T17:00:52,061           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,061           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,062           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,062           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,062           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,063           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,063                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,063                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,063                 directory, all directories are treated like packages.
2023-12-07T17:00:52,063           ********************************************************************************

2023-12-07T17:00:52,063   !!
2023-12-07T17:00:52,063     check.warn(importable)
2023-12-07T17:00:52,064   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-12-07T17:00:52,064   !!

2023-12-07T17:00:52,064           ********************************************************************************
2023-12-07T17:00:52,064           ############################
2023-12-07T17:00:52,064           # Package would be ignored #
2023-12-07T17:00:52,064           ############################
2023-12-07T17:00:52,065           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-12-07T17:00:52,065           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,065           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,065           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-12-07T17:00:52,065           to the `packages` configuration field.

2023-12-07T17:00:52,066           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,066           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,066           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,066           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,066           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,067           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-12-07T17:00:52,067           already explicitly excluding 'moleculekit.share.atomselect' via
2023-12-07T17:00:52,067           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,067           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,067           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,067           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,068           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,068           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,068                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,068                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,068                 directory, all directories are treated like packages.
2023-12-07T17:00:52,068           ********************************************************************************

2023-12-07T17:00:52,069   !!
2023-12-07T17:00:52,069     check.warn(importable)
2023-12-07T17:00:52,069   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-12-07T17:00:52,069   !!

2023-12-07T17:00:52,069           ********************************************************************************
2023-12-07T17:00:52,070           ############################
2023-12-07T17:00:52,070           # Package would be ignored #
2023-12-07T17:00:52,070           ############################
2023-12-07T17:00:52,070           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-12-07T17:00:52,070           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,070           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,070           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-12-07T17:00:52,071           to the `packages` configuration field.

2023-12-07T17:00:52,071           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,071           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,071           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,071           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,072           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,072           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-12-07T17:00:52,072           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-12-07T17:00:52,072           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,072           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,072           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,073           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,073           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,073           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,073                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,073                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,074                 directory, all directories are treated like packages.
2023-12-07T17:00:52,074           ********************************************************************************

2023-12-07T17:00:52,074   !!
2023-12-07T17:00:52,074     check.warn(importable)
2023-12-07T17:00:52,074   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-12-07T17:00:52,074   !!

2023-12-07T17:00:52,075           ********************************************************************************
2023-12-07T17:00:52,075           ############################
2023-12-07T17:00:52,075           # Package would be ignored #
2023-12-07T17:00:52,075           ############################
2023-12-07T17:00:52,075           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-12-07T17:00:52,075           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,075           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,076           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-12-07T17:00:52,076           to the `packages` configuration field.

2023-12-07T17:00:52,076           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,076           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,076           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,076           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,077           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,077           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-12-07T17:00:52,077           already explicitly excluding 'moleculekit.tmalign' via
2023-12-07T17:00:52,077           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,077           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,077           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,078           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,078           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,078           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,078                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,078                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,079                 directory, all directories are treated like packages.
2023-12-07T17:00:52,079           ********************************************************************************

2023-12-07T17:00:52,079   !!
2023-12-07T17:00:52,079     check.warn(importable)
2023-12-07T17:00:52,079   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-12-07T17:00:52,079   !!

2023-12-07T17:00:52,080           ********************************************************************************
2023-12-07T17:00:52,081           ############################
2023-12-07T17:00:52,081           # Package would be ignored #
2023-12-07T17:00:52,083           ############################
2023-12-07T17:00:52,083           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-12-07T17:00:52,084           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,084           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,084           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-12-07T17:00:52,084           to the `packages` configuration field.

2023-12-07T17:00:52,085           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,085           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,085           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,086           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,086           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-12-07T17:00:52,086           already explicitly excluding 'moleculekit.tmalign.include' via
2023-12-07T17:00:52,086           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,087           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,087           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,087           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,087           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,088           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,088                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,088                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,088                 directory, all directories are treated like packages.
2023-12-07T17:00:52,088           ********************************************************************************

2023-12-07T17:00:52,089   !!
2023-12-07T17:00:52,089     check.warn(importable)
2023-12-07T17:00:52,089   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-12-07T17:00:52,089   !!

2023-12-07T17:00:52,090           ********************************************************************************
2023-12-07T17:00:52,090           ############################
2023-12-07T17:00:52,090           # Package would be ignored #
2023-12-07T17:00:52,090           ############################
2023-12-07T17:00:52,090           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-12-07T17:00:52,090           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,091           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,091           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-12-07T17:00:52,091           to the `packages` configuration field.

2023-12-07T17:00:52,091           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,091           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,092           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,092           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,092           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,092           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-12-07T17:00:52,092           already explicitly excluding 'moleculekit.tmalign.src' via
2023-12-07T17:00:52,093           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,093           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,093           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,093           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,093           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,094           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,094                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,094                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,094                 directory, all directories are treated like packages.
2023-12-07T17:00:52,094           ********************************************************************************

2023-12-07T17:00:52,095   !!
2023-12-07T17:00:52,095     check.warn(importable)
2023-12-07T17:00:52,095   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-12-07T17:00:52,095   !!

2023-12-07T17:00:52,095           ********************************************************************************
2023-12-07T17:00:52,095           ############################
2023-12-07T17:00:52,095           # Package would be ignored #
2023-12-07T17:00:52,096           ############################
2023-12-07T17:00:52,096           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-12-07T17:00:52,096           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,096           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,096           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-12-07T17:00:52,096           to the `packages` configuration field.

2023-12-07T17:00:52,097           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,097           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,097           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,097           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,097           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,098           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-12-07T17:00:52,098           already explicitly excluding 'moleculekit.wrapping' via
2023-12-07T17:00:52,098           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,098           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,098           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,098           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,099           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,099           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,099                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,099                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,099                 directory, all directories are treated like packages.
2023-12-07T17:00:52,100           ********************************************************************************

2023-12-07T17:00:52,100   !!
2023-12-07T17:00:52,100     check.warn(importable)
2023-12-07T17:00:52,100   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-12-07T17:00:52,100   !!

2023-12-07T17:00:52,100           ********************************************************************************
2023-12-07T17:00:52,101           ############################
2023-12-07T17:00:52,101           # Package would be ignored #
2023-12-07T17:00:52,101           ############################
2023-12-07T17:00:52,101           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-12-07T17:00:52,101           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,101           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,101           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-12-07T17:00:52,102           to the `packages` configuration field.

2023-12-07T17:00:52,102           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,102           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,102           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,102           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,103           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,103           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-12-07T17:00:52,103           already explicitly excluding 'moleculekit.xtc_utils' via
2023-12-07T17:00:52,103           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,103           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,103           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,103           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,104           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,104           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,104                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,104                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,104                 directory, all directories are treated like packages.
2023-12-07T17:00:52,105           ********************************************************************************

2023-12-07T17:00:52,105   !!
2023-12-07T17:00:52,105     check.warn(importable)
2023-12-07T17:00:52,105   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-12-07T17:00:52,105   !!

2023-12-07T17:00:52,105           ********************************************************************************
2023-12-07T17:00:52,106           ############################
2023-12-07T17:00:52,106           # Package would be ignored #
2023-12-07T17:00:52,106           ############################
2023-12-07T17:00:52,106           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-12-07T17:00:52,106           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,107           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,107           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-12-07T17:00:52,107           to the `packages` configuration field.

2023-12-07T17:00:52,107           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,107           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,107           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,108           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,108           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,108           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-12-07T17:00:52,108           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-12-07T17:00:52,109           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,109           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,109           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,109           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,109           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,110           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,110                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,110                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,110                 directory, all directories are treated like packages.
2023-12-07T17:00:52,111           ********************************************************************************

2023-12-07T17:00:52,111   !!
2023-12-07T17:00:52,111     check.warn(importable)
2023-12-07T17:00:52,111   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-12-07T17:00:52,111   !!

2023-12-07T17:00:52,112           ********************************************************************************
2023-12-07T17:00:52,112           ############################
2023-12-07T17:00:52,112           # Package would be ignored #
2023-12-07T17:00:52,112           ############################
2023-12-07T17:00:52,113           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-12-07T17:00:52,113           but it is absent from setuptools' `packages` configuration.

2023-12-07T17:00:52,114           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-07T17:00:52,114           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-12-07T17:00:52,114           to the `packages` configuration field.

2023-12-07T17:00:52,114           Alternatively, you can also rely on setuptools' discovery methods
2023-12-07T17:00:52,115           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-07T17:00:52,115           instead of `find_packages(...)`/`find:`).

2023-12-07T17:00:52,116           You can read more about "package discovery" on setuptools documentation page:

2023-12-07T17:00:52,116           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-07T17:00:52,119           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-12-07T17:00:52,119           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-12-07T17:00:52,119           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-07T17:00:52,119           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-07T17:00:52,120           combination with a more fine grained `package-data` configuration.

2023-12-07T17:00:52,120           You can read more about "package data files" on setuptools documentation page:

2023-12-07T17:00:52,120           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-07T17:00:52,121           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-07T17:00:52,121                 even if it does not contain any `.py` files.
2023-12-07T17:00:52,121                 On the other hand, currently there is no concept of package data
2023-12-07T17:00:52,121                 directory, all directories are treated like packages.
2023-12-07T17:00:52,121           ********************************************************************************

2023-12-07T17:00:52,122   !!
2023-12-07T17:00:52,122     check.warn(importable)
2023-12-07T17:00:52,122   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:52,122   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:52,122   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-07T17:00:52,122   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-07T17:00:52,122   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-07T17:00:52,123   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-07T17:00:52,123   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-07T17:00:52,123   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-07T17:00:52,125   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-07T17:00:52,125   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-07T17:00:52,147   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-07T17:00:52,150   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-07T17:00:52,151   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-07T17:00:52,168   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-07T17:00:52,170   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-07T17:00:52,171   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-07T17:00:52,174   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-07T17:00:52,176   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-07T17:00:52,373   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-12-07T17:00:52,374   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-12-07T17:00:52,376   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-12-07T17:00:52,377   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,378   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,380   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,382   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,385   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,388   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,390   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,392   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,394   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,397   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,399   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,401   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,403   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,406   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,408   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,410   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,412   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,414   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,417   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,419   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,421   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,423   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,426   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,428   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,430   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,432   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,434   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,436   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,439   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,441   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,443   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,446   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,448   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,450   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,452   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,454   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,457   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,459   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,461   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,463   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,466   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,468   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,470   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,472   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,474   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,477   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,479   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,481   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,484   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,486   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,488   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,490   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,493   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,495   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,497   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,499   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,500   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,502   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,504   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,506   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,508   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,510   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,511   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,513   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,515   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,517   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,520   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,522   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,525   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,527   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,529   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,531   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,534   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,536   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,538   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,540   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,542   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,544   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,547   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,549   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,552   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,554   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,556   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,558   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,561   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,563   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,566   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,568   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,570   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,572   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,574   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,576   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,579   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,581   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,583   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,585   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,587   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,589   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,592   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,594   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,597   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,599   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,601   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,603   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,606   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,608   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,610   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,612   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,614   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,617   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,619   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,621   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,623   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,626   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,628   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,630   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,633   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,635   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,638   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,640   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,642   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,645   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,647   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,649   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,651   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,653   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,656   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,658   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,661   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,663   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,666   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,668   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,670   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,672   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,675   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,677   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,679   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,681   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,684   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,686   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,688   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,690   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,692   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,694   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,697   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,699   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,701   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,703   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,706   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,708   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,710   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,712   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,715   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,717   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,719   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,721   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,724   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,726   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,728   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,731   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,733   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,735   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,737   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,740   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,742   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,744   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,746   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,748   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,751   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,753   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,755   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,757   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,759   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,762   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,764   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,766   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-07T17:00:52,768   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-07T17:00:52,769   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-07T17:00:52,788   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-07T17:00:52,790   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-07T17:00:52,792   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-12-07T17:00:52,793   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-12-07T17:00:52,796   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-07T17:00:52,797   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-07T17:00:52,804   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-07T17:00:52,805   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-07T17:00:52,832   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-07T17:00:52,834   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-12-07T17:00:52,835   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-12-07T17:00:52,856   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-12-07T17:00:52,857   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-12-07T17:00:52,859   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-12-07T17:00:52,860   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-12-07T17:00:52,863   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-12-07T17:00:52,865   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-12-07T17:00:52,867   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-12-07T17:00:52,867   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-12-07T17:00:52,871   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-12-07T17:00:52,873   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-12-07T17:00:52,875   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-07T17:00:52,876   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-07T17:00:52,904   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-07T17:00:52,906   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-07T17:00:52,907   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-07T17:00:52,935   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-07T17:00:52,937   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-07T17:00:52,938   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-07T17:00:52,958   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-07T17:00:52,960   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-07T17:00:52,961   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-07T17:00:52,988   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-07T17:00:53,000   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-12-07T17:00:53,000   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.14'
2023-12-07T17:00:53,001   running build_ext
2023-12-07T17:00:53,011   building 'moleculekit.interactions.hbonds' extension
2023-12-07T17:00:53,012   creating build/temp.linux-armv7l-cpython-39
2023-12-07T17:00:53,013   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-12-07T17:00:53,013   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-07T17:00:53,014   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-07T17:00:53,015   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-12-07T17:00:53,271   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:00:53,271                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:00:53,271                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:00:53,271                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-12-07T17:00:53,272   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:00:53,272      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:00:53,272         |  ^~~~~~~
2023-12-07T17:01:19,440   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:01:19,756   building 'moleculekit.interactions.pipi' extension
2023-12-07T17:01:19,757   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-07T17:01:19,760   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-12-07T17:01:19,988   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:01:19,988                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:01:19,988                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:01:19,988                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-12-07T17:01:19,989   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:01:19,989      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:01:19,989         |  ^~~~~~~
2023-12-07T17:01:48,108   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:01:48,426   building 'moleculekit.interactions.cationpi' extension
2023-12-07T17:01:48,427   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-07T17:01:48,428   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-12-07T17:01:48,659   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:01:48,659                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:01:48,660                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:01:48,660                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-12-07T17:01:48,660   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:01:48,660      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:01:48,660         |  ^~~~~~~
2023-12-07T17:02:16,596   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:02:16,915   building 'moleculekit.interactions.sigmahole' extension
2023-12-07T17:02:16,915   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-07T17:02:16,916   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-12-07T17:02:17,149   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:02:17,149                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:02:17,149                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:02:17,149                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-12-07T17:02:17,150   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:02:17,150      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:02:17,150         |  ^~~~~~~
2023-12-07T17:02:44,574   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:02:44,895   building 'moleculekit.wrapping' extension
2023-12-07T17:02:44,896   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-07T17:02:44,897   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-12-07T17:02:45,133   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:02:45,133                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:02:45,133                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:02:45,133                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-12-07T17:02:45,134   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:02:45,134      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:02:45,134         |  ^~~~~~~
2023-12-07T17:03:11,080   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:03:11,294   building 'moleculekit.bondguesser_utils' extension
2023-12-07T17:03:11,294   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-07T17:03:11,295   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-12-07T17:03:11,533   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:03:11,533                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:03:11,533                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:03:11,533                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-12-07T17:03:11,533   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:03:11,533      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:03:11,534         |  ^~~~~~~
2023-12-07T17:03:13,087   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-12-07T17:03:13,087   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T17:03:13,087   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-12-07T17:03:13,087         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T17:03:13,087   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T17:03:13,088   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-12-07T17:03:13,088         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T17:03:13,088   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-07T17:03:13,088   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-12-07T17:03:13,088         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-12-07T17:03:13,088   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,089   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,089         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,089   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,089   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T17:03:13,089         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,089   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,089   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,090         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,090   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,090   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,090         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,090   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,090   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T17:03:13,090         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,091   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,091   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,091         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,091   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,091   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,091         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,091   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,092   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T17:03:13,092         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,092   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,092   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,092         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,092   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,092   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,093         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,093   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,093   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,093         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,093   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,093   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,093         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,094   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,094   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,094         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,094   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,094   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T17:03:13,094         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,095   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,095   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,095         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,095   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,095   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-07T17:03:13,095         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,095   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,096   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,096         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,096   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,096   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-07T17:03:13,096         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,096   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,096   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,097         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,097   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-07T17:03:13,097   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-07T17:03:13,097         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,115   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-12-07T17:03:13,116   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T17:03:13,116   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-12-07T17:03:13,116         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-12-07T17:03:13,116   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T17:03:13,116   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-12-07T17:03:13,117         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-07T17:03:36,224   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:03:36,533   building 'moleculekit.atomselect_utils' extension
2023-12-07T17:03:36,534   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-07T17:03:36,535   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-12-07T17:03:36,770   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:03:36,770                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:03:36,770                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:03:36,770                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-12-07T17:03:36,770   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:03:36,770      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:03:36,770         |  ^~~~~~~
2023-12-07T17:03:38,522   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-12-07T17:03:38,522   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T17:03:38,522   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-12-07T17:03:38,523         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-07T17:03:38,528   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-07T17:03:38,528   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T17:03:38,529   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-07T17:03:38,529         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T17:03:38,534   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-07T17:03:38,535   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-07T17:03:38,535   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-07T17:03:38,535         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T17:04:08,403   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:04:08,728   building 'moleculekit.distance_utils' extension
2023-12-07T17:04:08,729   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-07T17:04:08,729   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-12-07T17:04:08,960   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:04:08,960                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:04:08,960                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:04:08,960                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-12-07T17:04:08,961   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:04:08,961      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:04:08,961         |  ^~~~~~~
2023-12-07T17:04:44,122   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:04:44,453   building 'moleculekit.occupancy_utils' extension
2023-12-07T17:04:44,454   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-07T17:04:44,455   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-12-07T17:04:44,691   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:04:44,691                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:04:44,691                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:04:44,691                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-12-07T17:04:44,692   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:04:44,692      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:04:44,692         |  ^~~~~~~
2023-12-07T17:05:07,720   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:05:07,932   building 'moleculekit.xtc' extension
2023-12-07T17:05:07,932   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-12-07T17:05:07,933   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-12-07T17:05:07,934   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-12-07T17:05:08,172   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,172      66 |  "OK",
2023-12-07T17:05:08,172         |  ^~~~
2023-12-07T17:05:08,173   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,173      67 |  "Header",
2023-12-07T17:05:08,173         |  ^~~~~~~~
2023-12-07T17:05:08,173   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,173      68 |  "String",
2023-12-07T17:05:08,173         |  ^~~~~~~~
2023-12-07T17:05:08,174   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,174      69 |  "Double",
2023-12-07T17:05:08,174         |  ^~~~~~~~
2023-12-07T17:05:08,174   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,174      70 |  "Integer",
2023-12-07T17:05:08,174         |  ^~~~~~~~~
2023-12-07T17:05:08,175   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,175      71 |  "Float",
2023-12-07T17:05:08,175         |  ^~~~~~~
2023-12-07T17:05:08,175   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,175      72 |  "Unsigned integer",
2023-12-07T17:05:08,175         |  ^~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,176   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,176      73 |  "Compressed 3D coordinate",
2023-12-07T17:05:08,176         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,176   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,176      74 |  "Closing file",
2023-12-07T17:05:08,177         |  ^~~~~~~~~~~~~~
2023-12-07T17:05:08,177   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,177      75 |  "Magic number",
2023-12-07T17:05:08,177         |  ^~~~~~~~~~~~~~
2023-12-07T17:05:08,177   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,177      76 |  "Not enough memory",
2023-12-07T17:05:08,177         |  ^~~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,178   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,178      77 |  "End of file",
2023-12-07T17:05:08,178         |  ^~~~~~~~~~~~~
2023-12-07T17:05:08,178   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-07T17:05:08,178      78 |  "File not found"
2023-12-07T17:05:08,178         |  ^~~~~~~~~~~~~~~~
2023-12-07T17:05:08,187   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-07T17:05:08,187   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,187     459 |     while (size >= num && num_of_bits < 32)
2023-12-07T17:05:08,187         |            ~~~~~^~~~~~
2023-12-07T17:05:08,188   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-07T17:05:08,188   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,189     505 |     while (bytes[num_of_bytes] >= num)
2023-12-07T17:05:08,189         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-07T17:05:08,191   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-07T17:05:08,192   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,192     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-07T17:05:08,192         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,192   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,192     616 |   for (i = 0; i < num_of_bytes; i++)
2023-12-07T17:05:08,192         |               ~~^~~~~~~~~~~~~~
2023-12-07T17:05:08,193   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,193     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-12-07T17:05:08,193         |               ~~^~~~~~~~~~~~~~~~
2023-12-07T17:05:08,195   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-07T17:05:08,195   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,195     664 |   if (lastbits < num_of_bits)
2023-12-07T17:05:08,195         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-12-07T17:05:08,198   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-07T17:05:08,199   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,199     785 |  if(size3>xfp->buf1size)
2023-12-07T17:05:08,199         |     ~~~~~^~~~~~~~~~~~~~
2023-12-07T17:05:08,200   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,201     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T17:05:08,201         |                   ^
2023-12-07T17:05:08,203   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,203     932 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,204         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,204   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,204     935 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,204         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,204   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,204     938 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,204         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,205   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,205     945 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,205         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,205   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,205     948 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,205         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,206   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,206     951 |     if(countmjh >= size3 ) { return -1; }
2023-12-07T17:05:08,206         |        ~~~~~~~~~^~~~~~~~
2023-12-07T17:05:08,206   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,206     756 |  int smallidx,  minidx, maxidx;
2023-12-07T17:05:08,206         |                 ^~~~~~
2023-12-07T17:05:08,206   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,206     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-07T17:05:08,207         |                         ^~~~~~
2023-12-07T17:05:08,207   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-07T17:05:08,207     763 |  int errval=1;
2023-12-07T17:05:08,207         |      ^~~~~~
2023-12-07T17:05:08,207   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-07T17:05:08,208   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,208    1011 |  if(size3>xfp->buf1size)
2023-12-07T17:05:08,208         |     ~~~~~^~~~~~~~~~~~~~
2023-12-07T17:05:08,210   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,210    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T17:05:08,210         |                     ~~~~~~~~^~~~~~~
2023-12-07T17:05:08,210   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,211    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T17:05:08,211         |                    ~~~~~~~~^~~~~~~
2023-12-07T17:05:08,211   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,211    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-07T17:05:08,211         |                    ~~~~~~~~^~~~~~~
2023-12-07T17:05:08,213   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,213    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-07T17:05:08,213         |                  ^
2023-12-07T17:05:08,213   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,213    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T17:05:08,213         |                   ^
2023-12-07T17:05:08,217   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,217    1275 |  if(tmp==(unsigned int)buf2[0])
2023-12-07T17:05:08,217         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,217   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,218    1001 |  int errval;
2023-12-07T17:05:08,218         |      ^~~~~~
2023-12-07T17:05:08,220   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-07T17:05:08,220   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,220    1316 |  if(size3>xfp->buf1size)
2023-12-07T17:05:08,221         |     ~~~~~^~~~~~~~~~~~~~
2023-12-07T17:05:08,222   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,222    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T17:05:08,222         |                   ^
2023-12-07T17:05:08,225   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,225    1289 |  int smallidx,  maxidx, minidx;
2023-12-07T17:05:08,225         |                         ^~~~~~
2023-12-07T17:05:08,225   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,226    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-07T17:05:08,226         |                         ^~~~~~
2023-12-07T17:05:08,226   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-07T17:05:08,226    1297 |  int errval=1;
2023-12-07T17:05:08,226         |      ^~~~~~
2023-12-07T17:05:08,227   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-07T17:05:08,227   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,228    1513 |  if(size3>xfp->buf1size) {
2023-12-07T17:05:08,228         |     ~~~~~^~~~~~~~~~~~~~
2023-12-07T17:05:08,232   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,232    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-07T17:05:08,232         |                  ^
2023-12-07T17:05:08,232   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-07T17:05:08,232    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-07T17:05:08,232         |                   ^
2023-12-07T17:05:08,236   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-07T17:05:08,236    1743 |  if(tmp==(unsigned int)buf2[0])
2023-12-07T17:05:08,236         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-07T17:05:08,236   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-07T17:05:08,236    1504 |  int errval=1;
2023-12-07T17:05:08,237         |      ^~~~~~
2023-12-07T17:05:10,482   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-12-07T17:05:10,737   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-12-07T17:05:11,333   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-12-07T17:05:11,333   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-07T17:05:11,333     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-12-07T17:05:11,333         |      ^~~
2023-12-07T17:05:11,340   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-12-07T17:05:11,340   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-07T17:05:11,340     418 |  int nf3 = nframes * 3;
2023-12-07T17:05:11,340         |      ^~~
2023-12-07T17:05:11,344   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-12-07T17:05:11,345   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-12-07T17:05:11,345     491 |  int reading_index = 0;
2023-12-07T17:05:11,345         |      ^~~~~~~~~~~~~
2023-12-07T17:05:11,345   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-12-07T17:05:11,345     492 |  int writing_index = 0;
2023-12-07T17:05:11,345         |      ^~~~~~~~~~~~~
2023-12-07T17:05:12,098   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-12-07T17:05:12,334   In file included from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-07T17:05:12,334                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-07T17:05:12,334                    from /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-07T17:05:12,334                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-12-07T17:05:12,334   /tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-07T17:05:12,335      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-07T17:05:12,335         |  ^~~~~~~
2023-12-07T17:05:32,417   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:05:32,741   building 'moleculekit.tmalign' extension
2023-12-07T17:05:32,742   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-07T17:05:32,742   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-07T17:05:32,744   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-12-07T17:06:02,158   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-j10sna_x/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-12-07T17:06:20,650   In file included from /usr/include/c++/10/vector:72,
2023-12-07T17:06:20,650                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-07T17:06:20,650   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-12-07T17:06:20,651   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-12-07T17:06:20,651     426 |       vector<_Tp, _Alloc>::
2023-12-07T17:06:20,651         |       ^~~~~~~~~~~~~~~~~~~
2023-12-07T17:06:21,227   In file included from /usr/include/c++/10/vector:67,
2023-12-07T17:06:21,227                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-07T17:06:21,228   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-12-07T17:06:21,228   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T17:06:21,228    1198 |    _M_realloc_insert(end(), __x);
2023-12-07T17:06:21,228         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T17:06:21,228   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T17:06:21,229    1198 |    _M_realloc_insert(end(), __x);
2023-12-07T17:06:21,229         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T17:06:21,229   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-07T17:06:21,229    1198 |    _M_realloc_insert(end(), __x);
2023-12-07T17:06:21,230         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-07T17:06:23,670   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-12-07T17:06:24,111   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-12-07T17:06:24,111   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.14'
2023-12-07T17:06:24,111   installing to build/bdist.linux-armv7l/wheel
2023-12-07T17:06:24,112   running install
2023-12-07T17:06:24,136   running install_lib
2023-12-07T17:06:24,143   creating build/bdist.linux-armv7l
2023-12-07T17:06:24,144   creating build/bdist.linux-armv7l/wheel
2023-12-07T17:06:24,146   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,149   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,169   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T17:06:24,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T17:06:24,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-07T17:06:24,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-07T17:06:24,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,188   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,220   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T17:06:24,221   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T17:06:24,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-07T17:06:24,242   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T17:06:24,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T17:06:24,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-07T17:06:24,268   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T17:06:24,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T17:06:24,271   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-07T17:06:24,297   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,329   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,353   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T17:06:24,354   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T17:06:24,374   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-07T17:06:24,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-07T17:06:24,400   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T17:06:24,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T17:06:24,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-07T17:06:24,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,422   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T17:06:24,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T17:06:24,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T17:06:24,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T17:06:24,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-07T17:06:24,431   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T17:06:24,432   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T17:06:24,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T17:06:24,436   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T17:06:24,437   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T17:06:24,439   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T17:06:24,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-07T17:06:24,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-07T17:06:24,468   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T17:06:24,469   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T17:06:24,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T17:06:24,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-07T17:06:24,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,479   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T17:06:24,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T17:06:24,484   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T17:06:24,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-07T17:06:24,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,493   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T17:06:24,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T17:06:24,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-07T17:06:24,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,534   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-07T17:06:24,536   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T17:06:24,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T17:06:24,540   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T17:06:24,542   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T17:06:24,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-07T17:06:24,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-07T17:06:24,548   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T17:06:24,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T17:06:24,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T17:06:24,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T17:06:24,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-07T17:06:24,560   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T17:06:24,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T17:06:24,564   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-07T17:06:24,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,568   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,571   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T17:06:24,572   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T17:06:24,575   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-07T17:06:24,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,624   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,626   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T17:06:24,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T17:06:24,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T17:06:24,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T17:06:24,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-07T17:06:24,637   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-07T17:06:24,652   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:24,776   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T17:06:24,777   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T17:06:24,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-07T17:06:24,822   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T17:06:24,824   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-07T17:06:24,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-07T17:06:24,829   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-12-07T17:06:24,834   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,836   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,838   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,857   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,859   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,861   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,912   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,916   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,954   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,958   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,964   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,966   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,970   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,978   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,980   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,984   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,992   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,994   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,996   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:24,998   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,006   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,008   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,010   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,012   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,014   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,020   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,024   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,028   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,030   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,047   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,049   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T17:06:25,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,093   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,095   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,132   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T17:06:25,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-07T17:06:25,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,163   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,165   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,167   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,171   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,173   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-07T17:06:25,196   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T17:06:25,198   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T17:06:25,200   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-07T17:06:25,393   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,395   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,398   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,399   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,403   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,405   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,408   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,412   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,415   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,420   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,423   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,426   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,430   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,433   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-07T17:06:25,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,455   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,457   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,492   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T17:06:25,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T17:06:25,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T17:06:25,514   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-07T17:06:25,515   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-07T17:06:25,521   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-07T17:06:25,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-07T17:06:25,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-07T17:06:25,526   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T17:06:25,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T17:06:25,546   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-07T17:06:25,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-07T17:06:25,573   running install_egg_info
2023-12-07T17:06:25,579   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.14-py3.9.egg-info
2023-12-07T17:06:25,592   running install_scripts
2023-12-07T17:06:25,651   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.14.dist-info/WHEEL
2023-12-07T17:06:25,657   creating '/tmp/pip-wheel-pluolcl1/.tmp-piefz1ls/moleculekit-1.8.14-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-07T17:06:25,660   adding 'moleculekit/__init__.py'
2023-12-07T17:06:25,661   adding 'moleculekit/_version.py'
2023-12-07T17:06:25,663   adding 'moleculekit/align.py'
2023-12-07T17:06:25,974   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:25,986   adding 'moleculekit/bondguesser.py'
2023-12-07T17:06:26,231   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:26,240   adding 'moleculekit/config.py'
2023-12-07T17:06:26,242   adding 'moleculekit/dihedral.py'
2023-12-07T17:06:26,244   adding 'moleculekit/distance.py'
2023-12-07T17:06:26,564   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:26,576   adding 'moleculekit/home.py'
2023-12-07T17:06:26,577   adding 'moleculekit/logging.ini'
2023-12-07T17:06:26,591   adding 'moleculekit/molecule.py'
2023-12-07T17:06:26,818   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:26,827   adding 'moleculekit/opm.py'
2023-12-07T17:06:26,829   adding 'moleculekit/periodictable.py'
2023-12-07T17:06:26,830   adding 'moleculekit/pymolgraphics.py'
2023-12-07T17:06:26,832   adding 'moleculekit/rcsb.py'
2023-12-07T17:06:26,833   adding 'moleculekit/rdkitintegration.py'
2023-12-07T17:06:26,845   adding 'moleculekit/readers.py'
2023-12-07T17:06:27,452   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:27,476   adding 'moleculekit/util.py'
2023-12-07T17:06:27,478   adding 'moleculekit/version.py'
2023-12-07T17:06:27,479   adding 'moleculekit/viewer.py'
2023-12-07T17:06:27,481   adding 'moleculekit/vmd_wrapper'
2023-12-07T17:06:27,482   adding 'moleculekit/vmdgraphics.py'
2023-12-07T17:06:27,484   adding 'moleculekit/vmdviewer.py'
2023-12-07T17:06:27,738   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:27,751   adding 'moleculekit/writers.py'
2023-12-07T17:06:28,019   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:28,029   adding 'moleculekit/atomselect/__init__.py'
2023-12-07T17:06:28,031   adding 'moleculekit/atomselect/analyze.py'
2023-12-07T17:06:28,033   adding 'moleculekit/atomselect/atomselect.py'
2023-12-07T17:06:28,035   adding 'moleculekit/atomselect/languageparser.py'
2023-12-07T17:06:28,139   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-12-07T17:06:28,150   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-12-07T17:06:28,242   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-12-07T17:06:28,252   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-12-07T17:06:28,353   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-12-07T17:06:28,363   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-12-07T17:06:28,365   adding 'moleculekit/interactions/__init__.py'
2023-12-07T17:06:28,653   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:28,924   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:28,935   adding 'moleculekit/interactions/interactions.py'
2023-12-07T17:06:29,218   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:29,507   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-12-07T17:06:29,609   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-12-07T17:06:29,618   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-12-07T17:06:29,710   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-12-07T17:06:29,719   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-12-07T17:06:29,813   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-12-07T17:06:29,822   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-12-07T17:06:29,915   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-12-07T17:06:29,924   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-12-07T17:06:30,012   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-12-07T17:06:30,020   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-12-07T17:06:30,022   adding 'moleculekit/pdbx/__init__.py'
2023-12-07T17:06:30,026   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-12-07T17:06:30,029   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-12-07T17:06:30,031   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-12-07T17:06:30,032   adding 'moleculekit/pdbx/reader/__init__.py'
2023-12-07T17:06:30,034   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-12-07T17:06:30,036   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-12-07T17:06:30,037   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-12-07T17:06:30,038   adding 'moleculekit/pdbx/tests/__init__.py'
2023-12-07T17:06:30,040   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-12-07T17:06:30,041   adding 'moleculekit/pdbx/writer/__init__.py'
2023-12-07T17:06:30,043   adding 'moleculekit/ply/__init__.py'
2023-12-07T17:06:30,047   adding 'moleculekit/ply/lex.py'
2023-12-07T17:06:30,059   adding 'moleculekit/ply/yacc.py'
2023-12-07T17:06:30,062   adding 'moleculekit/projections/__init__.py'
2023-12-07T17:06:30,063   adding 'moleculekit/projections/metriccoordinate.py'
2023-12-07T17:06:30,067   adding 'moleculekit/projections/metricdihedral.py'
2023-12-07T17:06:30,071   adding 'moleculekit/projections/metricdistance.py'
2023-12-07T17:06:30,073   adding 'moleculekit/projections/metricfluctuation.py'
2023-12-07T17:06:30,075   adding 'moleculekit/projections/metricgyration.py'
2023-12-07T17:06:30,078   adding 'moleculekit/projections/metricplumed2.py'
2023-12-07T17:06:30,080   adding 'moleculekit/projections/metricrmsd.py'
2023-12-07T17:06:30,082   adding 'moleculekit/projections/metricsasa.py'
2023-12-07T17:06:30,084   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-12-07T17:06:30,086   adding 'moleculekit/projections/metricshell.py'
2023-12-07T17:06:30,088   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-12-07T17:06:30,089   adding 'moleculekit/projections/metrictmscore.py'
2023-12-07T17:06:30,091   adding 'moleculekit/projections/projection.py'
2023-12-07T17:06:30,092   adding 'moleculekit/projections/util.py'
2023-12-07T17:06:30,094   adding 'moleculekit/share/ALA.cif'
2023-12-07T17:06:30,096   adding 'moleculekit/share/backbone.cif'
2023-12-07T17:06:31,404   adding 'moleculekit/share/opm_sequences.json'
2023-12-07T17:06:31,489   adding 'moleculekit/share/atomselect/atomselect.json'
2023-12-07T17:06:31,494   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-12-07T17:06:31,495   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-12-07T17:06:31,497   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-12-07T17:06:31,498   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-12-07T17:06:31,499   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-12-07T17:06:31,500   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-12-07T17:06:31,501   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-12-07T17:06:31,503   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-12-07T17:06:31,504   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-12-07T17:06:31,505   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-12-07T17:06:31,506   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-12-07T17:06:31,508   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-12-07T17:06:31,509   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-12-07T17:06:31,510   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-12-07T17:06:31,511   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-12-07T17:06:31,512   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-12-07T17:06:31,514   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-12-07T17:06:31,515   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-12-07T17:06:31,516   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-12-07T17:06:31,518   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-12-07T17:06:31,519   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-12-07T17:06:31,520   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-12-07T17:06:31,521   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-12-07T17:06:31,524   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-12-07T17:06:31,526   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-12-07T17:06:31,527   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-12-07T17:06:31,528   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-12-07T17:06:31,530   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-12-07T17:06:31,531   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-12-07T17:06:31,532   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-12-07T17:06:31,533   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-12-07T17:06:31,534   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-12-07T17:06:31,536   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-12-07T17:06:31,537   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-12-07T17:06:31,538   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-12-07T17:06:31,539   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-12-07T17:06:31,541   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-12-07T17:06:31,542   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-12-07T17:06:31,543   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-12-07T17:06:31,544   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-12-07T17:06:31,546   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-12-07T17:06:31,547   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-12-07T17:06:31,548   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-12-07T17:06:31,550   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-12-07T17:06:31,551   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-12-07T17:06:31,552   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-12-07T17:06:31,553   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-12-07T17:06:31,555   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-12-07T17:06:31,556   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-12-07T17:06:31,557   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-12-07T17:06:31,559   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-12-07T17:06:31,560   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-12-07T17:06:31,561   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-12-07T17:06:31,562   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-12-07T17:06:31,563   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-12-07T17:06:31,565   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-12-07T17:06:31,566   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-12-07T17:06:31,567   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-12-07T17:06:31,568   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-12-07T17:06:31,570   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-12-07T17:06:31,571   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-12-07T17:06:31,572   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-12-07T17:06:31,573   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-12-07T17:06:31,574   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-12-07T17:06:31,576   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-12-07T17:06:31,577   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-12-07T17:06:31,578   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-12-07T17:06:31,579   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-12-07T17:06:31,581   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-12-07T17:06:31,582   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-12-07T17:06:31,583   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-12-07T17:06:31,584   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-12-07T17:06:31,586   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-12-07T17:06:31,587   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-12-07T17:06:31,588   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-12-07T17:06:31,589   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-12-07T17:06:31,590   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-12-07T17:06:31,592   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-12-07T17:06:31,593   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-12-07T17:06:31,594   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-12-07T17:06:31,595   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-12-07T17:06:31,597   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-12-07T17:06:31,598   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-12-07T17:06:31,599   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-12-07T17:06:31,600   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-12-07T17:06:31,602   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-12-07T17:06:31,603   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-12-07T17:06:31,604   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-12-07T17:06:31,605   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-12-07T17:06:31,607   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-12-07T17:06:31,608   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-12-07T17:06:31,609   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-12-07T17:06:31,610   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-12-07T17:06:31,612   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-12-07T17:06:31,613   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-12-07T17:06:31,614   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-12-07T17:06:31,616   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-12-07T17:06:31,617   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-12-07T17:06:31,618   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-12-07T17:06:31,620   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-12-07T17:06:31,621   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-12-07T17:06:31,622   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-12-07T17:06:31,623   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-12-07T17:06:31,624   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-12-07T17:06:31,626   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-12-07T17:06:31,627   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-12-07T17:06:31,628   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-12-07T17:06:31,629   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-12-07T17:06:31,631   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-12-07T17:06:31,632   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-12-07T17:06:31,633   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-12-07T17:06:31,634   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-12-07T17:06:31,636   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-12-07T17:06:31,637   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-12-07T17:06:31,638   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-12-07T17:06:31,639   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-12-07T17:06:31,641   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-12-07T17:06:31,642   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-12-07T17:06:31,643   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-12-07T17:06:31,644   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-12-07T17:06:31,646   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-12-07T17:06:31,647   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-12-07T17:06:31,648   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-12-07T17:06:31,649   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-12-07T17:06:31,651   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-12-07T17:06:31,652   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-12-07T17:06:31,653   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-12-07T17:06:31,654   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-12-07T17:06:31,656   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-12-07T17:06:31,657   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-12-07T17:06:31,658   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-12-07T17:06:31,659   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-12-07T17:06:31,661   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-12-07T17:06:31,662   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-12-07T17:06:31,663   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-12-07T17:06:31,664   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-12-07T17:06:31,666   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-12-07T17:06:31,667   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-12-07T17:06:31,668   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-12-07T17:06:31,669   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-12-07T17:06:31,671   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-12-07T17:06:31,672   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-12-07T17:06:31,673   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-12-07T17:06:31,674   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-12-07T17:06:31,676   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-12-07T17:06:31,677   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-12-07T17:06:31,678   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-12-07T17:06:31,679   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-12-07T17:06:31,681   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-12-07T17:06:31,682   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-12-07T17:06:31,683   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-12-07T17:06:31,684   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-12-07T17:06:31,685   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-12-07T17:06:31,687   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-12-07T17:06:31,688   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-12-07T17:06:31,689   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-12-07T17:06:31,691   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-12-07T17:06:31,692   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-12-07T17:06:31,693   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-12-07T17:06:31,694   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-12-07T17:06:31,696   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-12-07T17:06:31,697   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-12-07T17:06:31,698   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-12-07T17:06:31,699   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-12-07T17:06:31,700   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-12-07T17:06:31,701   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-12-07T17:06:31,703   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-12-07T17:06:31,704   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-12-07T17:06:31,705   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-12-07T17:06:31,706   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-12-07T17:06:31,708   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-12-07T17:06:31,709   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-12-07T17:06:31,710   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-12-07T17:06:31,711   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-12-07T17:06:31,713   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-12-07T17:06:31,714   adding 'moleculekit/smallmol/__init__.py'
2023-12-07T17:06:31,720   adding 'moleculekit/smallmol/smallmol.py'
2023-12-07T17:06:31,722   adding 'moleculekit/smallmol/smallmollib.py'
2023-12-07T17:06:31,724   adding 'moleculekit/smallmol/test_smallmol.py'
2023-12-07T17:06:31,726   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-12-07T17:06:31,728   adding 'moleculekit/smallmol/util.py'
2023-12-07T17:06:31,730   adding 'moleculekit/smallmol/tools/__init__.py'
2023-12-07T17:06:31,731   adding 'moleculekit/smallmol/tools/clustering.py'
2023-12-07T17:06:31,733   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-12-07T17:06:31,734   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-12-07T17:06:31,825   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-12-07T17:06:31,834   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-12-07T17:06:31,835   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-12-07T17:06:31,837   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-12-07T17:06:31,854   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-12-07T17:06:31,857   adding 'moleculekit/tools/__init__.py'
2023-12-07T17:06:31,859   adding 'moleculekit/tools/atomtyper.py'
2023-12-07T17:06:31,862   adding 'moleculekit/tools/autosegment.py'
2023-12-07T17:06:31,863   adding 'moleculekit/tools/crystalpacking.py'
2023-12-07T17:06:31,867   adding 'moleculekit/tools/detect.py'
2023-12-07T17:06:31,869   adding 'moleculekit/tools/docking.py'
2023-12-07T17:06:31,871   adding 'moleculekit/tools/graphalignment.py'
2023-12-07T17:06:31,873   adding 'moleculekit/tools/hhblitsprofile.py'
2023-12-07T17:06:31,874   adding 'moleculekit/tools/moleculechecks.py'
2023-12-07T17:06:31,880   adding 'moleculekit/tools/preparation.py'
2023-12-07T17:06:31,883   adding 'moleculekit/tools/preparation_customres.py'
2023-12-07T17:06:31,885   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-12-07T17:06:31,888   adding 'moleculekit/tools/voxeldescriptors.py'
2023-12-07T17:06:31,890   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-12-07T17:06:31,891   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-12-07T17:06:31,984   adding 'moleculekit/wrapping/wrapping.cpp'
2023-12-07T17:06:31,993   adding 'moleculekit/wrapping/wrapping.pyx'
2023-12-07T17:06:32,083   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-12-07T17:06:32,092   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-12-07T17:06:32,093   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-12-07T17:06:32,096   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-12-07T17:06:32,098   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-12-07T17:06:32,099   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-12-07T17:06:32,106   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-12-07T17:06:32,108   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-12-07T17:06:32,110   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-12-07T17:06:32,112   adding 'moleculekit-1.8.14.dist-info/LICENSE'
2023-12-07T17:06:32,114   adding 'moleculekit-1.8.14.dist-info/METADATA'
2023-12-07T17:06:32,115   adding 'moleculekit-1.8.14.dist-info/WHEEL'
2023-12-07T17:06:32,116   adding 'moleculekit-1.8.14.dist-info/top_level.txt'
2023-12-07T17:06:32,120   adding 'moleculekit-1.8.14.dist-info/RECORD'
2023-12-07T17:06:32,250   removing build/bdist.linux-armv7l/wheel
2023-12-07T17:06:32,516   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-12-07T17:06:32,763   Created wheel for moleculekit: filename=moleculekit-1.8.14-cp39-cp39-linux_armv7l.whl size=12630508 sha256=e277c15109b7b3caa507bc1876045eab24d0e904508747d8163e6ef9e2908adc
2023-12-07T17:06:32,764   Stored in directory: /tmp/pip-ephem-wheel-cache-f1gx33dl/wheels/9e/51/0d/abd4cba7eec2db8464c96c61bda59aa8e8897fa70e2f21cc86
2023-12-07T17:06:32,790 Successfully built moleculekit
2023-12-07T17:06:33,077 Removed build tracker: '/tmp/pip-build-tracker-1xy0rhww'