2023-12-10T02:39:23,836 Created temporary directory: /tmp/pip-build-tracker-78rsvcyo
2023-12-10T02:39:23,837 Initialized build tracking at /tmp/pip-build-tracker-78rsvcyo
2023-12-10T02:39:23,838 Created build tracker: /tmp/pip-build-tracker-78rsvcyo
2023-12-10T02:39:23,838 Entered build tracker: /tmp/pip-build-tracker-78rsvcyo
2023-12-10T02:39:23,839 Created temporary directory: /tmp/pip-wheel-kx3tt4hi
2023-12-10T02:39:23,842 Created temporary directory: /tmp/pip-ephem-wheel-cache-emkdl343
2023-12-10T02:39:23,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-10T02:39:23,871 2 location(s) to search for versions of itaxotools-calculate-distances:
2023-12-10T02:39:23,871 * https://pypi.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:23,871 * https://www.piwheels.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:23,871 Fetching project page and analyzing links: https://pypi.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:23,872 Getting page https://pypi.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:23,874 Found index url https://pypi.org/simple/
2023-12-10T02:39:24,082 Fetched page https://pypi.org/simple/itaxotools-calculate-distances/ as application/vnd.pypi.simple.v1+json
2023-12-10T02:39:24,083   Skipping link: No binaries permitted for itaxotools-calculate-distances: https://files.pythonhosted.org/packages/0b/52/a5c727db5f4f907a53679aa6ed36a8b2bb9c74708674cdc53309f3990979/itaxotools_calculate_distances-0.1.1-cp37-abi3-macosx_10_12_x86_64.macosx_11_0_arm64.macosx_10_12_universal2.whl (from https://pypi.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4)
2023-12-10T02:39:24,084   Skipping link: No binaries permitted for itaxotools-calculate-distances: https://files.pythonhosted.org/packages/e7/ce/76222c4d671b69675a1fd35348705063097410b77ac29ac5d9a0c0595610/itaxotools_calculate_distances-0.1.1-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4)
2023-12-10T02:39:24,085   Skipping link: No binaries permitted for itaxotools-calculate-distances: https://files.pythonhosted.org/packages/fa/89/2e4ed3e034465c228a9e3093e669aadcca156a5ab7de43b0a999a4612174/itaxotools_calculate_distances-0.1.1-cp37-abi3-win_amd64.whl (from https://pypi.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4)
2023-12-10T02:39:24,086   Found link https://files.pythonhosted.org/packages/2a/1b/19802f51d3b61b1f0848f732827024bb7045a9a333425c182fc0fb9c9916/itaxotools_calculate_distances-0.1.1.tar.gz (from https://pypi.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4), version: 0.1.1
2023-12-10T02:39:24,086 Fetching project page and analyzing links: https://www.piwheels.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:24,087 Getting page https://www.piwheels.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:24,089 Found index url https://www.piwheels.org/simple/
2023-12-10T02:39:24,238 Fetched page https://www.piwheels.org/simple/itaxotools-calculate-distances/ as text/html
2023-12-10T02:39:24,240   Skipping link: No binaries permitted for itaxotools-calculate-distances: https://www.piwheels.org/simple/itaxotools-calculate-distances/itaxotools_calculate_distances-0.1.1-cp37-abi3-linux_armv7l.whl#sha256=99c3b2af85dd05ed02550409ab911ccfadbc7d52912751d78455d4d80e0feb84 (from https://www.piwheels.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4)
2023-12-10T02:39:24,240   Skipping link: No binaries permitted for itaxotools-calculate-distances: https://www.piwheels.org/simple/itaxotools-calculate-distances/itaxotools_calculate_distances-0.1.1-cp37-abi3-linux_armv6l.whl#sha256=99c3b2af85dd05ed02550409ab911ccfadbc7d52912751d78455d4d80e0feb84 (from https://www.piwheels.org/simple/itaxotools-calculate-distances/) (requires-python:>=3.8, <4)
2023-12-10T02:39:24,241 Skipping link: not a file: https://www.piwheels.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:24,242 Skipping link: not a file: https://pypi.org/simple/itaxotools-calculate-distances/
2023-12-10T02:39:24,260 Given no hashes to check 1 links for project 'itaxotools-calculate-distances': discarding no candidates
2023-12-10T02:39:24,278 Collecting itaxotools-calculate-distances==0.1.1
2023-12-10T02:39:24,281   Created temporary directory: /tmp/pip-unpack-8w5o_2lk
2023-12-10T02:39:24,411   Downloading itaxotools_calculate_distances-0.1.1.tar.gz (26 kB)
2023-12-10T02:39:24,459   Added itaxotools-calculate-distances==0.1.1 from https://files.pythonhosted.org/packages/2a/1b/19802f51d3b61b1f0848f732827024bb7045a9a333425c182fc0fb9c9916/itaxotools_calculate_distances-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-78rsvcyo'
2023-12-10T02:39:24,462   Created temporary directory: /tmp/pip-build-env-oel99fl5
2023-12-10T02:39:24,467   Installing build dependencies: started
2023-12-10T02:39:24,468   Running command pip subprocess to install build dependencies
2023-12-10T02:39:25,611   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-10T02:39:26,113   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-10T02:39:27,178   Collecting maturin
2023-12-10T02:39:27,198     Using cached https://www.piwheels.org/simple/maturin/maturin-1.4.0-cp311-cp311-linux_armv7l.whl (6.3 MB)
2023-12-10T02:39:29,647   Installing collected packages: maturin
2023-12-10T02:39:30,169   Successfully installed maturin-1.4.0
2023-12-10T02:39:30,684   Installing build dependencies: finished with status 'done'
2023-12-10T02:39:30,687   Getting requirements to build wheel: started
2023-12-10T02:39:30,688   Running command Getting requirements to build wheel
2023-12-10T02:39:30,883   Getting requirements to build wheel: finished with status 'done'
2023-12-10T02:39:30,886   Created temporary directory: /tmp/pip-modern-metadata-1jqjwy0s
2023-12-10T02:39:30,888   Preparing metadata (pyproject.toml): started
2023-12-10T02:39:30,890   Running command Preparing metadata (pyproject.toml)
2023-12-10T02:39:31,215   ⚠️  Warning: Please use maturin in pyproject.toml with a version constraint, e.g. `requires = ["maturin>=1.0,<2.0"]`. This will become an error.
2023-12-10T02:39:31,550       Updating crates.io index
2023-12-10T02:39:32,314    Downloading crates ...
2023-12-10T02:39:32,692     Downloaded inventory-impl v0.1.11
2023-12-10T02:39:32,704     Downloaded pyo3-macros v0.13.2
2023-12-10T02:39:32,714     Downloaded numpy v0.13.2
2023-12-10T02:39:32,755     Downloaded ghost v0.1.14
2023-12-10T02:39:32,792     Downloaded pyo3 v0.13.2
2023-12-10T02:39:33,103     Downloaded parking_lot v0.11.2
2023-12-10T02:39:33,152     Downloaded parking_lot_core v0.8.6
2023-12-10T02:39:33,189     Downloaded indoc v0.3.6
2023-12-10T02:39:33,225     Downloaded paste v0.1.18
2023-12-10T02:39:33,269     Downloaded inventory v0.1.11
2023-12-10T02:39:33,288     Downloaded paste-impl v0.1.18
2023-12-10T02:39:33,302     Downloaded indoc-impl v0.3.6
2023-12-10T02:39:33,314     Downloaded pyo3-macros-backend v0.13.2
2023-12-10T02:39:33,343     Downloaded cfg-if v0.1.10
2023-12-10T02:39:33,385   📦 Including license file "/tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f/LICENSE"
2023-12-10T02:39:33,387   🍹 Building a mixed python/rust project
2023-12-10T02:39:33,387   🔗 Found pyo3 bindings with abi3 support for Python ≥ 3.7
2023-12-10T02:39:33,659   🐍 Not using a specific python interpreter
2023-12-10T02:39:33,660   📡 Using build options features from pyproject.toml
2023-12-10T02:39:33,670   itaxotools_calculate_distances-0.1.1.dist-info
2023-12-10T02:39:33,671   Checking for Rust toolchain....
2023-12-10T02:39:33,671   Running `maturin pep517 write-dist-info --metadata-directory /tmp/pip-modern-metadata-1jqjwy0s --interpreter /usr/bin/python3`
2023-12-10T02:39:33,694   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-10T02:39:33,698   Source in /tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f has version 0.1.1, which satisfies requirement itaxotools-calculate-distances==0.1.1 from https://files.pythonhosted.org/packages/2a/1b/19802f51d3b61b1f0848f732827024bb7045a9a333425c182fc0fb9c9916/itaxotools_calculate_distances-0.1.1.tar.gz
2023-12-10T02:39:33,699   Removed itaxotools-calculate-distances==0.1.1 from https://files.pythonhosted.org/packages/2a/1b/19802f51d3b61b1f0848f732827024bb7045a9a333425c182fc0fb9c9916/itaxotools_calculate_distances-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-78rsvcyo'
2023-12-10T02:39:33,705 Created temporary directory: /tmp/pip-unpack-kn4ul9jb
2023-12-10T02:39:33,706 Created temporary directory: /tmp/pip-unpack-or4ietgc
2023-12-10T02:39:33,712 Building wheels for collected packages: itaxotools-calculate-distances
2023-12-10T02:39:33,716   Created temporary directory: /tmp/pip-wheel-48x6v1i3
2023-12-10T02:39:33,716   Destination directory: /tmp/pip-wheel-48x6v1i3
2023-12-10T02:39:33,718   Building wheel for itaxotools-calculate-distances (pyproject.toml): started
2023-12-10T02:39:33,719   Running command Building wheel for itaxotools-calculate-distances (pyproject.toml)
2023-12-10T02:39:33,889   Running `maturin pep517 build-wheel -i /usr/bin/python3 --compatibility off`
2023-12-10T02:39:33,903   ⚠️  Warning: Please use maturin in pyproject.toml with a version constraint, e.g. `requires = ["maturin>=1.0,<2.0"]`. This will become an error.
2023-12-10T02:39:34,308   📦 Including license file "/tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f/LICENSE"
2023-12-10T02:39:34,309   🍹 Building a mixed python/rust project
2023-12-10T02:39:34,309   🔗 Found pyo3 bindings with abi3 support for Python ≥ 3.7
2023-12-10T02:39:34,578   🐍 Not using a specific python interpreter
2023-12-10T02:39:34,579   📡 Using build options features from pyproject.toml
2023-12-10T02:39:35,115      Compiling autocfg v1.1.0
2023-12-10T02:39:35,116      Compiling proc-macro2 v1.0.70
2023-12-10T02:39:35,117      Compiling unicode-ident v1.0.12
2023-12-10T02:39:35,118      Compiling syn v1.0.109
2023-12-10T02:39:35,517      Compiling cfg-if v1.0.0
2023-12-10T02:39:35,670      Compiling scopeguard v1.2.0
2023-12-10T02:39:36,006      Compiling proc-macro-hack v0.5.20+deprecated
2023-12-10T02:39:37,161      Compiling libc v0.2.150
2023-12-10T02:39:38,096      Compiling memoffset v0.9.0
2023-12-10T02:39:39,424      Compiling num-traits v0.2.17
2023-12-10T02:39:39,878      Compiling crossbeam-utils v0.8.16
2023-12-10T02:39:41,649      Compiling quote v1.0.33
2023-12-10T02:39:42,485      Compiling crossbeam-epoch v0.9.15
2023-12-10T02:39:44,285      Compiling lock_api v0.4.11
2023-12-10T02:39:44,458      Compiling parking_lot_core v0.8.6
2023-12-10T02:39:45,798      Compiling syn v2.0.39
2023-12-10T02:39:54,991      Compiling num-integer v0.1.45
2023-12-10T02:39:56,178      Compiling matrixmultiply v0.3.8
2023-12-10T02:39:57,438      Compiling instant v0.1.12
2023-12-10T02:39:57,717      Compiling smallvec v1.11.2
2023-12-10T02:39:59,705      Compiling unindent v0.1.11
2023-12-10T02:40:00,532      Compiling inventory v0.1.11
2023-12-10T02:40:07,146      Compiling paste-impl v0.1.18
2023-12-10T02:40:11,775      Compiling pyo3 v0.13.2
2023-12-10T02:40:13,753      Compiling rawpointer v0.2.1
2023-12-10T02:40:13,992      Compiling rayon-core v1.12.0
2023-12-10T02:40:16,139      Compiling ghost v0.1.14
2023-12-10T02:40:19,087      Compiling pyo3-macros-backend v0.13.2
2023-12-10T02:40:22,231      Compiling parking_lot v0.11.2
2023-12-10T02:40:25,722      Compiling paste v0.1.18
2023-12-10T02:40:25,887      Compiling crossbeam-deque v0.8.3
2023-12-10T02:40:32,475      Compiling num-complex v0.4.4
2023-12-10T02:40:38,399      Compiling either v1.9.0
2023-12-10T02:40:39,449      Compiling ndarray v0.15.6
2023-12-10T02:40:39,712      Compiling cfg-if v0.1.10
2023-12-10T02:40:39,870      Compiling rayon v1.8.0
2023-12-10T02:40:47,174      Compiling inventory-impl v0.1.11
2023-12-10T02:40:50,977      Compiling ctor v0.1.26
2023-12-10T02:40:53,561      Compiling indoc-impl v0.3.6
2023-12-10T02:40:56,983      Compiling pyo3-macros v0.13.2
2023-12-10T02:40:57,080      Compiling indoc v0.3.6
2023-12-10T02:41:22,524      Compiling numpy v0.13.2
2023-12-10T02:41:33,983      Compiling calculate_distances v0.1.1 (/tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f)
2023-12-10T02:41:34,400   warning: unnecessary parentheses around `if` condition
2023-12-10T02:41:34,401      --> src/distance.rs:161:8
2023-12-10T02:41:34,401       |
2023-12-10T02:41:34,402   161 |     if (end >= start) {
2023-12-10T02:41:34,402       |        ^            ^
2023-12-10T02:41:34,403       |
2023-12-10T02:41:34,403       = note: `#[warn(unused_parens)]` on by default
2023-12-10T02:41:34,404   help: remove these parentheses
2023-12-10T02:41:34,404       |
2023-12-10T02:41:34,405   161 -     if (end >= start) {
2023-12-10T02:41:34,405   161 +     if end >= start {
2023-12-10T02:41:34,406       |

2023-12-10T02:41:35,803   warning: method `iter` is never used
2023-12-10T02:41:35,803     --> src/column.rs:32:12
2023-12-10T02:41:35,804      |
2023-12-10T02:41:35,805   14 | impl<'s> Column<'s> {
2023-12-10T02:41:35,805      | ------------------- method in this implementation
2023-12-10T02:41:35,806   ...
2023-12-10T02:41:35,806   32 |     pub fn iter(&self) -> impl Iterator<Item = &str> {
2023-12-10T02:41:35,807      |            ^^^^
2023-12-10T02:41:35,807      |
2023-12-10T02:41:35,808      = note: `#[warn(dead_code)]` on by default

2023-12-10T02:41:35,830   warning: panic message is not a string literal
2023-12-10T02:41:35,831     --> src/needle/table.rs:28:20
2023-12-10T02:41:35,831      |
2023-12-10T02:41:35,832   28 |             panic!(format!("{:?} is not a valid index", [x, y]))
2023-12-10T02:41:35,832      |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-12-10T02:41:35,833      |
2023-12-10T02:41:35,833      = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
2023-12-10T02:41:35,834      = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
2023-12-10T02:41:35,835      = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
2023-12-10T02:41:35,835      = note: `#[warn(non_fmt_panics)]` on by default
2023-12-10T02:41:35,836   help: remove the `format!(..)` macro call
2023-12-10T02:41:35,836      |
2023-12-10T02:41:35,837   28 -             panic!(format!("{:?} is not a valid index", [x, y]))
2023-12-10T02:41:35,837   28 +             panic!("{:?} is not a valid index", [x, y])
2023-12-10T02:41:35,838      |

2023-12-10T02:41:35,839   warning: panic message is not a string literal
2023-12-10T02:41:35,840     --> src/needle/table.rs:44:20
2023-12-10T02:41:35,840      |
2023-12-10T02:41:35,841   44 |             panic!(format!("{:?} is not a valid index", [x, y]))
2023-12-10T02:41:35,842      |                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
2023-12-10T02:41:35,842      |
2023-12-10T02:41:35,843      = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021
2023-12-10T02:41:35,843      = note: for more information, see <https://doc.rust-lang.org/nightly/edition-guide/rust-2021/panic-macro-consistency.html>
2023-12-10T02:41:35,844      = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here
2023-12-10T02:41:35,844   help: remove the `format!(..)` macro call
2023-12-10T02:41:35,845      |
2023-12-10T02:41:35,845   44 -             panic!(format!("{:?} is not a valid index", [x, y]))
2023-12-10T02:41:35,846   44 +             panic!("{:?} is not a valid index", [x, y])
2023-12-10T02:41:35,846      |

2023-12-10T02:41:44,047   warning: `calculate_distances` (lib) generated 4 warnings (run `cargo fix --lib -p calculate_distances` to apply 3 suggestions)
2023-12-10T02:41:44,048       Finished release [optimized] target(s) in 2m 09s
2023-12-10T02:41:44,048   warning: the following packages contain code that will be rejected by a future version of Rust: pyo3 v0.13.2, pyo3-macros-backend v0.13.2
2023-12-10T02:41:44,072   note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
2023-12-10T02:41:45,132   📦 Built wheel for abi3 Python ≥ 3.7 to /tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f/target/wheels/itaxotools_calculate_distances-0.1.1-cp37-abi3-linux_armv7l.whl
2023-12-10T02:41:45,134   /tmp/pip-wheel-kx3tt4hi/itaxotools-calculate-distances_1c496109d7ee4b20875397a34945d77f/target/wheels/itaxotools_calculate_distances-0.1.1-cp37-abi3-linux_armv7l.whl
2023-12-10T02:41:45,179   Building wheel for itaxotools-calculate-distances (pyproject.toml): finished with status 'done'
2023-12-10T02:41:45,196   Created wheel for itaxotools-calculate-distances: filename=itaxotools_calculate_distances-0.1.1-cp37-abi3-linux_armv7l.whl size=1252112 sha256=20591e6004e71e1a6371683e88b909bd02632aeed0ac6d2a2bb7ae4a148abb1c
2023-12-10T02:41:45,197   Stored in directory: /tmp/pip-ephem-wheel-cache-emkdl343/wheels/87/44/c3/cf717ee229246f313bab33bc306c122d791d87b08c543c1384
2023-12-10T02:41:45,209 Successfully built itaxotools-calculate-distances
2023-12-10T02:41:45,252 Removed build tracker: '/tmp/pip-build-tracker-78rsvcyo'