2023-12-10T03:47:23,961 Created temporary directory: /tmp/pip-build-tracker-2e5_v9mu 2023-12-10T03:47:23,962 Initialized build tracking at /tmp/pip-build-tracker-2e5_v9mu 2023-12-10T03:47:23,962 Created build tracker: /tmp/pip-build-tracker-2e5_v9mu 2023-12-10T03:47:23,963 Entered build tracker: /tmp/pip-build-tracker-2e5_v9mu 2023-12-10T03:47:23,964 Created temporary directory: /tmp/pip-wheel-ghmsa9sb 2023-12-10T03:47:23,967 Created temporary directory: /tmp/pip-ephem-wheel-cache-e77hm9eo 2023-12-10T03:47:23,989 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-10T03:47:23,992 2 location(s) to search for versions of cas-tools: 2023-12-10T03:47:23,992 * https://pypi.org/simple/cas-tools/ 2023-12-10T03:47:23,992 * https://www.piwheels.org/simple/cas-tools/ 2023-12-10T03:47:23,993 Fetching project page and analyzing links: https://pypi.org/simple/cas-tools/ 2023-12-10T03:47:23,994 Getting page https://pypi.org/simple/cas-tools/ 2023-12-10T03:47:23,995 Found index url https://pypi.org/simple/ 2023-12-10T03:47:24,158 Fetched page https://pypi.org/simple/cas-tools/ as application/vnd.pypi.simple.v1+json 2023-12-10T03:47:24,161 Found link https://files.pythonhosted.org/packages/39/25/84ad8f63a94c6504874dc8b8952559a8173e31c44d7085681005874aaaec/cas-tools-0.0.1.dev1.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev1 2023-12-10T03:47:24,162 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e7/15/c3d6bdb34ca613e297547d37a7d1500eb43dd369b4086bdf2564fb8abce8/cas_tools-0.0.1.dev1-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,163 Found link https://files.pythonhosted.org/packages/8b/08/a7b6ef7b2d95e0c54aecb418b2d9659844b67aa83fdfebe6ea61e276a64d/cas-tools-0.0.1.dev2.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev2 2023-12-10T03:47:24,163 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/08/9b/16ebcd2b8da3b0b0ca1000a97c32d40ded9b724fef4deecc5ff6a6121c26/cas_tools-0.0.1.dev2-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,164 Found link https://files.pythonhosted.org/packages/f2/fd/47959f06131aa2719e7f23e8f7a717b352712324361eb34cd0123eccb913/cas-tools-0.0.1.dev3.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev3 2023-12-10T03:47:24,165 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/38/43/db7f7e682c3100d5228b1cd6bb12ec5d6c1ed4d1413ff9e7af0b9d6c01c1/cas_tools-0.0.1.dev3-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,165 Found link https://files.pythonhosted.org/packages/5b/59/a17368c4058f72bb2058ee66924fed3e3bd76d7d080bde1930e5e9a916f3/cas-tools-0.0.1.dev4.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev4 2023-12-10T03:47:24,166 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/20/02/ebab61043190922d625bc6b41c2404962077e3b2813832ccec36959ae39c/cas_tools-0.0.1.dev4-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,167 Found link https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev5 2023-12-10T03:47:24,167 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/34/e3/66acaf2480221181a8bad0260749bfd4ea7d49d94497834ed076f7f314c4/cas_tools-0.0.1.dev5-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,168 Found link https://files.pythonhosted.org/packages/31/fe/edf3090b4fce3a360bedde089374c1e8e427b26dab7874ac90c8e02b2500/cas-tools-0.0.1.dev6.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev6 2023-12-10T03:47:24,168 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e6/e8/af79cbbc4e5b1328d467ce4440ab6d41a651808431a66f1b53203e54e63e/cas_tools-0.0.1.dev6-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-10T03:47:24,169 Fetching project page and analyzing links: https://www.piwheels.org/simple/cas-tools/ 2023-12-10T03:47:24,170 Getting page https://www.piwheels.org/simple/cas-tools/ 2023-12-10T03:47:24,171 Found index url https://www.piwheels.org/simple/ 2023-12-10T03:47:24,335 Fetched page https://www.piwheels.org/simple/cas-tools/ as text/html 2023-12-10T03:47:24,338 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev4-py3-none-any.whl#sha256=884485f1e67d6bcfc0781f3645378fcef01d605eab258622c0291a7d1e81b845 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-10T03:47:24,338 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev3-py3-none-any.whl#sha256=abf7a34cd83393262dd0c884c087f0578be24c49c3c6b7f70d97a5370a799502 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-10T03:47:24,339 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev2-py3-none-any.whl#sha256=2befe7822c5dcdf4c1c1c1041bea4b8ff79fdba77c1a19dfd2655d8e05ede19f (from https://www.piwheels.org/simple/cas-tools/) 2023-12-10T03:47:24,339 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev1-py3-none-any.whl#sha256=44c420d45db20626cfaa3e67b0fac798db383ceeda7559e02131debe0722a092 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-10T03:47:24,340 Skipping link: not a file: https://www.piwheels.org/simple/cas-tools/ 2023-12-10T03:47:24,340 Skipping link: not a file: https://pypi.org/simple/cas-tools/ 2023-12-10T03:47:24,359 Given no hashes to check 1 links for project 'cas-tools': discarding no candidates 2023-12-10T03:47:24,377 Collecting cas-tools==0.0.1.dev5 2023-12-10T03:47:24,379 Created temporary directory: /tmp/pip-unpack-z8jyfvwb 2023-12-10T03:47:24,591 Downloading cas-tools-0.0.1.dev5.tar.gz (14 kB) 2023-12-10T03:47:24,632 Added cas-tools==0.0.1.dev5 from https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz to build tracker '/tmp/pip-build-tracker-2e5_v9mu' 2023-12-10T03:47:24,634 Running setup.py (path:/tmp/pip-wheel-ghmsa9sb/cas-tools_39d4bca223094a46bcb8bb8248765df6/setup.py) egg_info for package cas-tools 2023-12-10T03:47:24,635 Created temporary directory: /tmp/pip-pip-egg-info-fp85x1if 2023-12-10T03:47:24,635 Preparing metadata (setup.py): started 2023-12-10T03:47:24,637 Running command python setup.py egg_info 2023-12-10T03:47:25,654 running egg_info 2023-12-10T03:47:25,655 creating /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info 2023-12-10T03:47:25,681 writing /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/PKG-INFO 2023-12-10T03:47:25,685 writing dependency_links to /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/dependency_links.txt 2023-12-10T03:47:25,687 writing entry points to /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/entry_points.txt 2023-12-10T03:47:25,688 writing requirements to /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/requires.txt 2023-12-10T03:47:25,690 writing top-level names to /tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/top_level.txt 2023-12-10T03:47:25,692 writing manifest file '/tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/SOURCES.txt' 2023-12-10T03:47:25,769 reading manifest file '/tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/SOURCES.txt' 2023-12-10T03:47:25,773 writing manifest file '/tmp/pip-pip-egg-info-fp85x1if/cas_tools.egg-info/SOURCES.txt' 2023-12-10T03:47:25,880 Preparing metadata (setup.py): finished with status 'done' 2023-12-10T03:47:25,884 Source in /tmp/pip-wheel-ghmsa9sb/cas-tools_39d4bca223094a46bcb8bb8248765df6 has version 0.0.1.dev5, which satisfies requirement cas-tools==0.0.1.dev5 from https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz 2023-12-10T03:47:25,885 Removed cas-tools==0.0.1.dev5 from https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz from build tracker '/tmp/pip-build-tracker-2e5_v9mu' 2023-12-10T03:47:25,889 Created temporary directory: /tmp/pip-unpack-53e3hp81 2023-12-10T03:47:25,891 Created temporary directory: /tmp/pip-unpack-z31ess38 2023-12-10T03:47:25,898 Building wheels for collected packages: cas-tools 2023-12-10T03:47:25,902 Created temporary directory: /tmp/pip-wheel-ew7tsfof 2023-12-10T03:47:25,902 Building wheel for cas-tools (setup.py): started 2023-12-10T03:47:25,904 Destination directory: /tmp/pip-wheel-ew7tsfof 2023-12-10T03:47:25,904 Running command python setup.py bdist_wheel 2023-12-10T03:47:26,865 running bdist_wheel 2023-12-10T03:47:26,955 running build 2023-12-10T03:47:26,956 running build_py 2023-12-10T03:47:26,982 creating build 2023-12-10T03:47:26,982 creating build/lib 2023-12-10T03:47:26,983 creating build/lib/cas 2023-12-10T03:47:26,984 copying src/cas/file_utils.py -> build/lib/cas 2023-12-10T03:47:26,986 copying src/cas/anndata_conversion.py -> build/lib/cas 2023-12-10T03:47:26,989 copying src/cas/populate_cell_ids.py -> build/lib/cas 2023-12-10T03:47:26,990 copying src/cas/flatten_data_to_anndata.py -> build/lib/cas 2023-12-10T03:47:26,993 copying src/cas/__init__.py -> build/lib/cas 2023-12-10T03:47:26,994 copying src/cas/model.py -> build/lib/cas 2023-12-10T03:47:26,996 copying src/cas/__main__.py -> build/lib/cas 2023-12-10T03:47:26,998 copying src/cas/flatten_data_to_tables.py -> build/lib/cas 2023-12-10T03:47:27,000 running egg_info 2023-12-10T03:47:27,053 writing src/cas_tools.egg-info/PKG-INFO 2023-12-10T03:47:27,056 writing dependency_links to src/cas_tools.egg-info/dependency_links.txt 2023-12-10T03:47:27,057 writing entry points to src/cas_tools.egg-info/entry_points.txt 2023-12-10T03:47:27,059 writing requirements to src/cas_tools.egg-info/requires.txt 2023-12-10T03:47:27,060 writing top-level names to src/cas_tools.egg-info/top_level.txt 2023-12-10T03:47:27,086 reading manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2023-12-10T03:47:27,090 writing manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2023-12-10T03:47:27,115 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-10T03:47:27,116 !! 2023-12-10T03:47:27,117 ******************************************************************************** 2023-12-10T03:47:27,117 Please avoid running ``setup.py`` directly. 2023-12-10T03:47:27,118 Instead, use pypa/build, pypa/installer or other 2023-12-10T03:47:27,119 standards-based tools. 2023-12-10T03:47:27,120 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-10T03:47:27,120 ******************************************************************************** 2023-12-10T03:47:27,121 !! 2023-12-10T03:47:27,122 self.initialize_options() 2023-12-10T03:47:27,140 installing to build/bdist.linux-armv7l/wheel 2023-12-10T03:47:27,140 running install 2023-12-10T03:47:27,164 running install_lib 2023-12-10T03:47:27,188 creating build/bdist.linux-armv7l 2023-12-10T03:47:27,188 creating build/bdist.linux-armv7l/wheel 2023-12-10T03:47:27,190 creating build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,191 copying build/lib/cas/file_utils.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,193 copying build/lib/cas/anndata_conversion.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,195 copying build/lib/cas/populate_cell_ids.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,197 copying build/lib/cas/flatten_data_to_anndata.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,199 copying build/lib/cas/__init__.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,201 copying build/lib/cas/model.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,203 copying build/lib/cas/__main__.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,205 copying build/lib/cas/flatten_data_to_tables.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-10T03:47:27,207 running install_egg_info 2023-12-10T03:47:27,236 Copying src/cas_tools.egg-info to build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev5-py3.11.egg-info 2023-12-10T03:47:27,246 running install_scripts 2023-12-10T03:47:27,260 creating build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev5.dist-info/WHEEL 2023-12-10T03:47:27,263 creating '/tmp/pip-wheel-ew7tsfof/cas_tools-0.0.1.dev5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-10T03:47:27,265 adding 'cas/__init__.py' 2023-12-10T03:47:27,266 adding 'cas/__main__.py' 2023-12-10T03:47:27,268 adding 'cas/anndata_conversion.py' 2023-12-10T03:47:27,269 adding 'cas/file_utils.py' 2023-12-10T03:47:27,271 adding 'cas/flatten_data_to_anndata.py' 2023-12-10T03:47:27,273 adding 'cas/flatten_data_to_tables.py' 2023-12-10T03:47:27,275 adding 'cas/model.py' 2023-12-10T03:47:27,276 adding 'cas/populate_cell_ids.py' 2023-12-10T03:47:27,278 adding 'cas_tools-0.0.1.dev5.dist-info/METADATA' 2023-12-10T03:47:27,279 adding 'cas_tools-0.0.1.dev5.dist-info/WHEEL' 2023-12-10T03:47:27,280 adding 'cas_tools-0.0.1.dev5.dist-info/entry_points.txt' 2023-12-10T03:47:27,281 adding 'cas_tools-0.0.1.dev5.dist-info/top_level.txt' 2023-12-10T03:47:27,282 adding 'cas_tools-0.0.1.dev5.dist-info/RECORD' 2023-12-10T03:47:27,283 removing build/bdist.linux-armv7l/wheel 2023-12-10T03:47:27,399 Building wheel for cas-tools (setup.py): finished with status 'done' 2023-12-10T03:47:27,402 Created wheel for cas-tools: filename=cas_tools-0.0.1.dev5-py3-none-any.whl size=15815 sha256=106deb4084f234e1be8e30df33ac79669672b14a15caefd6069b584efbdefdbf 2023-12-10T03:47:27,403 Stored in directory: /tmp/pip-ephem-wheel-cache-e77hm9eo/wheels/a7/f3/38/2ebc507707b9c12dfda3c8084ee661ed4829027c36e6553e95 2023-12-10T03:47:27,412 Successfully built cas-tools 2023-12-10T03:47:27,416 Removed build tracker: '/tmp/pip-build-tracker-2e5_v9mu'