2023-12-14T01:28:24,847 Created temporary directory: /tmp/pip-build-tracker-6uhl03pf 2023-12-14T01:28:24,848 Initialized build tracking at /tmp/pip-build-tracker-6uhl03pf 2023-12-14T01:28:24,848 Created build tracker: /tmp/pip-build-tracker-6uhl03pf 2023-12-14T01:28:24,849 Entered build tracker: /tmp/pip-build-tracker-6uhl03pf 2023-12-14T01:28:24,850 Created temporary directory: /tmp/pip-wheel-17neh7wx 2023-12-14T01:28:24,853 Created temporary directory: /tmp/pip-ephem-wheel-cache-wfq32qbx 2023-12-14T01:28:24,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-14T01:28:24,878 2 location(s) to search for versions of cas-tools: 2023-12-14T01:28:24,878 * https://pypi.org/simple/cas-tools/ 2023-12-14T01:28:24,878 * https://www.piwheels.org/simple/cas-tools/ 2023-12-14T01:28:24,879 Fetching project page and analyzing links: https://pypi.org/simple/cas-tools/ 2023-12-14T01:28:24,880 Getting page https://pypi.org/simple/cas-tools/ 2023-12-14T01:28:24,881 Found index url https://pypi.org/simple/ 2023-12-14T01:28:25,016 Fetched page https://pypi.org/simple/cas-tools/ as application/vnd.pypi.simple.v1+json 2023-12-14T01:28:25,022 Found link https://files.pythonhosted.org/packages/39/25/84ad8f63a94c6504874dc8b8952559a8173e31c44d7085681005874aaaec/cas-tools-0.0.1.dev1.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev1 2023-12-14T01:28:25,023 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e7/15/c3d6bdb34ca613e297547d37a7d1500eb43dd369b4086bdf2564fb8abce8/cas_tools-0.0.1.dev1-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,023 Found link https://files.pythonhosted.org/packages/8b/08/a7b6ef7b2d95e0c54aecb418b2d9659844b67aa83fdfebe6ea61e276a64d/cas-tools-0.0.1.dev2.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev2 2023-12-14T01:28:25,024 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/08/9b/16ebcd2b8da3b0b0ca1000a97c32d40ded9b724fef4deecc5ff6a6121c26/cas_tools-0.0.1.dev2-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,025 Found link https://files.pythonhosted.org/packages/f2/fd/47959f06131aa2719e7f23e8f7a717b352712324361eb34cd0123eccb913/cas-tools-0.0.1.dev3.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev3 2023-12-14T01:28:25,025 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/38/43/db7f7e682c3100d5228b1cd6bb12ec5d6c1ed4d1413ff9e7af0b9d6c01c1/cas_tools-0.0.1.dev3-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,026 Found link https://files.pythonhosted.org/packages/5b/59/a17368c4058f72bb2058ee66924fed3e3bd76d7d080bde1930e5e9a916f3/cas-tools-0.0.1.dev4.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev4 2023-12-14T01:28:25,027 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/20/02/ebab61043190922d625bc6b41c2404962077e3b2813832ccec36959ae39c/cas_tools-0.0.1.dev4-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,028 Found link https://files.pythonhosted.org/packages/c0/26/eb1701b654d3ca93f9d6ddc1cc7bafde1a2414a3942a27fbd00f88bd837c/cas-tools-0.0.1.dev5.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev5 2023-12-14T01:28:25,028 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/34/e3/66acaf2480221181a8bad0260749bfd4ea7d49d94497834ed076f7f314c4/cas_tools-0.0.1.dev5-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,029 Found link https://files.pythonhosted.org/packages/31/fe/edf3090b4fce3a360bedde089374c1e8e427b26dab7874ac90c8e02b2500/cas-tools-0.0.1.dev6.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev6 2023-12-14T01:28:25,029 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/e6/e8/af79cbbc4e5b1328d467ce4440ab6d41a651808431a66f1b53203e54e63e/cas_tools-0.0.1.dev6-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,030 Found link https://files.pythonhosted.org/packages/5d/c6/45849e4bb4acb7ab50dc597dddee9a85ebc66a0293c618fb53d068b48459/cas-tools-0.0.1.dev7.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev7 2023-12-14T01:28:25,031 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/77/a6/b1664a1fc48c6e04bee19da0fbd2d517fed8603b7adf7e7c3556b51f46bb/cas_tools-0.0.1.dev7-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,031 Found link https://files.pythonhosted.org/packages/b9/5e/39f97fb29d99b0ef2f2ffcffe6cab596041f77151661c1a2ce8808c686da/cas-tools-0.0.1.dev8.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev8 2023-12-14T01:28:25,032 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/fe/5b/e35e24291fc1dc7deb8412af12e8ef38d089aa68cd1559e13671183637d9/cas_tools-0.0.1.dev8-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,032 Found link https://files.pythonhosted.org/packages/28/ec/5317b3525f1d8446524985a0eafd9be6ebd8d7ada90d82fef5a5830a585f/cas-tools-0.0.1.dev9.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev9 2023-12-14T01:28:25,033 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/5f/03/908dbfa19ffc6f6f5ca2af139a014f6c37df11b806ea533b4f60b455483f/cas_tools-0.0.1.dev9-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,033 Found link https://files.pythonhosted.org/packages/bc/7b/8d83e7c4a8092e943f141e7355efee65d1073c627ca29010a1d6b3de3c49/cas-tools-0.0.1.dev10.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev10 2023-12-14T01:28:25,034 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/5c/8f/e3ab1e6bfd12e8923bed3f58deb4f7c9b78cf8bfbefa99ca056a2b2cc629/cas_tools-0.0.1.dev10-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,034 Found link https://files.pythonhosted.org/packages/0f/7f/e5292b1dd5194b69f1c889d61a1b7d4de6626bc028686c2820b8dc2ef9bc/cas-tools-0.0.1.dev11.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev11 2023-12-14T01:28:25,035 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/44/d5/fade1277a18d2b06d23c28aa588ffa830cded8700d3f5df0aeb1dc96df50/cas_tools-0.0.1.dev11-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,036 Found link https://files.pythonhosted.org/packages/9f/bf/165ae60044eba072c68d8b261243f9426db3a1b1350baa015b8ddedd2b86/cas-tools-0.0.1.dev12.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev12 2023-12-14T01:28:25,037 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/0a/a4/16192439bc57c9b465c7cb24662df299d0e9a77f09c72784902afb233662/cas_tools-0.0.1.dev12-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,037 Found link https://files.pythonhosted.org/packages/37/27/4cc8301140c475d6780032593c4deea90ad16d67f782990c9589f25e3519/cas-tools-0.0.1.dev13.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev13 2023-12-14T01:28:25,038 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/b3/dd/0b1250e6647c40800b78e5b8f45e2a84ca3d65ab68ec0d4b453accd79e8f/cas_tools-0.0.1.dev13-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,038 Found link https://files.pythonhosted.org/packages/37/56/8d87b34b0fa0bda9637b14c9c9e276111f70a087daf852bd12a33f7fff89/cas-tools-0.0.1.dev14.tar.gz (from https://pypi.org/simple/cas-tools/), version: 0.0.1.dev14 2023-12-14T01:28:25,039 Skipping link: No binaries permitted for cas-tools: https://files.pythonhosted.org/packages/1c/44/08fb4da0aa85fcfd760ddaac70ca351555e5cdb9c69fb22d7418a6e38426/cas_tools-0.0.1.dev14-py3-none-any.whl (from https://pypi.org/simple/cas-tools/) 2023-12-14T01:28:25,040 Fetching project page and analyzing links: https://www.piwheels.org/simple/cas-tools/ 2023-12-14T01:28:25,041 Getting page https://www.piwheels.org/simple/cas-tools/ 2023-12-14T01:28:25,042 Found index url https://www.piwheels.org/simple/ 2023-12-14T01:28:25,210 Fetched page https://www.piwheels.org/simple/cas-tools/ as text/html 2023-12-14T01:28:25,214 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev13-py3-none-any.whl#sha256=e697eaf479a7f95a0617d50fb7d163d0ab959e46ed2005321b0e27a51615ea2c (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,215 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev12-py3-none-any.whl#sha256=8660a36d5ae41976b5432bb558e135257d612ebc8e96ee454a76c8c3c2df9d67 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,215 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev11-py3-none-any.whl#sha256=253c8aaaf9e5dfd4dc32c5ed874598cd8ff2b9cd53db343dbd0c0e8131f47d01 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,216 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev10-py3-none-any.whl#sha256=cc4db5cf1635cbcd278f78a84186e9c09806ec8d464217ed194e9afb2be4ee3c (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,216 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev9-py3-none-any.whl#sha256=d97fac5cb8e95f16397eb584ae82b0a123f953ea6c4b6ff1b27f087f6d2994ab (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,217 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev8-py3-none-any.whl#sha256=a6b2c441ada4352e8fe5b485ab027ee916fd54a1d613bc971749ec6d9e5978de (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,217 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev7-py3-none-any.whl#sha256=1826022909039fd8092dfa0adffda8e6833e680ec85b2938c90f77725fb1feb9 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,218 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev6-py3-none-any.whl#sha256=bc9d549ee95988005db8b88068e8b4b17d21a1e4ffa5c2045f683c29cfb33f44 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,218 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev5-py3-none-any.whl#sha256=106deb4084f234e1be8e30df33ac79669672b14a15caefd6069b584efbdefdbf (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,219 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev4-py3-none-any.whl#sha256=884485f1e67d6bcfc0781f3645378fcef01d605eab258622c0291a7d1e81b845 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,220 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev3-py3-none-any.whl#sha256=abf7a34cd83393262dd0c884c087f0578be24c49c3c6b7f70d97a5370a799502 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,220 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev2-py3-none-any.whl#sha256=2befe7822c5dcdf4c1c1c1041bea4b8ff79fdba77c1a19dfd2655d8e05ede19f (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,221 Skipping link: No binaries permitted for cas-tools: https://www.piwheels.org/simple/cas-tools/cas_tools-0.0.1.dev1-py3-none-any.whl#sha256=44c420d45db20626cfaa3e67b0fac798db383ceeda7559e02131debe0722a092 (from https://www.piwheels.org/simple/cas-tools/) 2023-12-14T01:28:25,221 Skipping link: not a file: https://www.piwheels.org/simple/cas-tools/ 2023-12-14T01:28:25,222 Skipping link: not a file: https://pypi.org/simple/cas-tools/ 2023-12-14T01:28:25,242 Given no hashes to check 1 links for project 'cas-tools': discarding no candidates 2023-12-14T01:28:25,261 Collecting cas-tools==0.0.1.dev14 2023-12-14T01:28:25,263 Created temporary directory: /tmp/pip-unpack-lx_5xq4a 2023-12-14T01:28:25,474 Downloading cas-tools-0.0.1.dev14.tar.gz (20 kB) 2023-12-14T01:28:25,540 Added cas-tools==0.0.1.dev14 from https://files.pythonhosted.org/packages/37/56/8d87b34b0fa0bda9637b14c9c9e276111f70a087daf852bd12a33f7fff89/cas-tools-0.0.1.dev14.tar.gz to build tracker '/tmp/pip-build-tracker-6uhl03pf' 2023-12-14T01:28:25,542 Running setup.py (path:/tmp/pip-wheel-17neh7wx/cas-tools_2647887ebf5940b498ac3854ab0094e6/setup.py) egg_info for package cas-tools 2023-12-14T01:28:25,543 Created temporary directory: /tmp/pip-pip-egg-info-so7gm5uj 2023-12-14T01:28:25,544 Preparing metadata (setup.py): started 2023-12-14T01:28:25,545 Running command python setup.py egg_info 2023-12-14T01:28:26,534 running egg_info 2023-12-14T01:28:26,535 creating /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info 2023-12-14T01:28:26,559 writing /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/PKG-INFO 2023-12-14T01:28:26,562 writing dependency_links to /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/dependency_links.txt 2023-12-14T01:28:26,563 writing entry points to /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/entry_points.txt 2023-12-14T01:28:26,565 writing requirements to /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/requires.txt 2023-12-14T01:28:26,566 writing top-level names to /tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/top_level.txt 2023-12-14T01:28:26,567 writing manifest file '/tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/SOURCES.txt' 2023-12-14T01:28:26,645 reading manifest file '/tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/SOURCES.txt' 2023-12-14T01:28:26,646 reading manifest template 'MANIFEST.in' 2023-12-14T01:28:26,650 writing manifest file '/tmp/pip-pip-egg-info-so7gm5uj/cas_tools.egg-info/SOURCES.txt' 2023-12-14T01:28:26,757 Preparing metadata (setup.py): finished with status 'done' 2023-12-14T01:28:26,761 Source in /tmp/pip-wheel-17neh7wx/cas-tools_2647887ebf5940b498ac3854ab0094e6 has version 0.0.1.dev14, which satisfies requirement cas-tools==0.0.1.dev14 from https://files.pythonhosted.org/packages/37/56/8d87b34b0fa0bda9637b14c9c9e276111f70a087daf852bd12a33f7fff89/cas-tools-0.0.1.dev14.tar.gz 2023-12-14T01:28:26,762 Removed cas-tools==0.0.1.dev14 from https://files.pythonhosted.org/packages/37/56/8d87b34b0fa0bda9637b14c9c9e276111f70a087daf852bd12a33f7fff89/cas-tools-0.0.1.dev14.tar.gz from build tracker '/tmp/pip-build-tracker-6uhl03pf' 2023-12-14T01:28:26,767 Created temporary directory: /tmp/pip-unpack-q49rlrfb 2023-12-14T01:28:26,768 Created temporary directory: /tmp/pip-unpack-hlqwytk5 2023-12-14T01:28:26,775 Building wheels for collected packages: cas-tools 2023-12-14T01:28:26,779 Created temporary directory: /tmp/pip-wheel-xc7aio6o 2023-12-14T01:28:26,780 Building wheel for cas-tools (setup.py): started 2023-12-14T01:28:26,781 Destination directory: /tmp/pip-wheel-xc7aio6o 2023-12-14T01:28:26,782 Running command python setup.py bdist_wheel 2023-12-14T01:28:27,777 running bdist_wheel 2023-12-14T01:28:27,873 running build 2023-12-14T01:28:27,874 running build_py 2023-12-14T01:28:27,901 creating build 2023-12-14T01:28:27,902 creating build/lib 2023-12-14T01:28:27,903 creating build/lib/cas 2023-12-14T01:28:27,904 copying src/cas/reports.py -> build/lib/cas 2023-12-14T01:28:27,906 copying src/cas/model.py -> build/lib/cas 2023-12-14T01:28:27,909 copying src/cas/flatten_data_to_tables.py -> build/lib/cas 2023-12-14T01:28:27,911 copying src/cas/__main__.py -> build/lib/cas 2023-12-14T01:28:27,913 copying src/cas/anndata_conversion.py -> build/lib/cas 2023-12-14T01:28:27,916 copying src/cas/__init__.py -> build/lib/cas 2023-12-14T01:28:27,917 copying src/cas/populate_cell_ids.py -> build/lib/cas 2023-12-14T01:28:27,919 copying src/cas/flatten_data_to_anndata.py -> build/lib/cas 2023-12-14T01:28:27,921 copying src/cas/file_utils.py -> build/lib/cas 2023-12-14T01:28:27,924 creating build/lib/cas/matrix_file 2023-12-14T01:28:27,925 copying src/cas/matrix_file/cxg_resolver.py -> build/lib/cas/matrix_file 2023-12-14T01:28:27,927 copying src/cas/matrix_file/base_resolver.py -> build/lib/cas/matrix_file 2023-12-14T01:28:27,929 copying src/cas/matrix_file/__init__.py -> build/lib/cas/matrix_file 2023-12-14T01:28:27,931 copying src/cas/matrix_file/resolver.py -> build/lib/cas/matrix_file 2023-12-14T01:28:27,933 creating build/lib/cas/accession 2023-12-14T01:28:27,934 copying src/cas/accession/hash_accession_manager.py -> build/lib/cas/accession 2023-12-14T01:28:27,936 copying src/cas/accession/incremental_accession_manager.py -> build/lib/cas/accession 2023-12-14T01:28:27,938 copying src/cas/accession/__init__.py -> build/lib/cas/accession 2023-12-14T01:28:27,939 copying src/cas/accession/base_accession_manager.py -> build/lib/cas/accession 2023-12-14T01:28:27,942 creating build/lib/cas/ingest 2023-12-14T01:28:27,943 copying src/cas/ingest/ingest_user_table.py -> build/lib/cas/ingest 2023-12-14T01:28:27,945 copying src/cas/ingest/config_validator.py -> build/lib/cas/ingest 2023-12-14T01:28:27,947 copying src/cas/ingest/__init__.py -> build/lib/cas/ingest 2023-12-14T01:28:27,948 running egg_info 2023-12-14T01:28:28,004 writing src/cas_tools.egg-info/PKG-INFO 2023-12-14T01:28:28,007 writing dependency_links to src/cas_tools.egg-info/dependency_links.txt 2023-12-14T01:28:28,009 writing entry points to src/cas_tools.egg-info/entry_points.txt 2023-12-14T01:28:28,022 writing requirements to src/cas_tools.egg-info/requires.txt 2023-12-14T01:28:28,023 writing top-level names to src/cas_tools.egg-info/top_level.txt 2023-12-14T01:28:28,052 reading manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2023-12-14T01:28:28,055 reading manifest template 'MANIFEST.in' 2023-12-14T01:28:28,058 writing manifest file 'src/cas_tools.egg-info/SOURCES.txt' 2023-12-14T01:28:28,062 copying src/cas/ingest/config_schema.yaml -> build/lib/cas/ingest 2023-12-14T01:28:28,089 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-14T01:28:28,090 !! 2023-12-14T01:28:28,091 ******************************************************************************** 2023-12-14T01:28:28,091 Please avoid running ``setup.py`` directly. 2023-12-14T01:28:28,092 Instead, use pypa/build, pypa/installer or other 2023-12-14T01:28:28,093 standards-based tools. 2023-12-14T01:28:28,094 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-14T01:28:28,094 ******************************************************************************** 2023-12-14T01:28:28,095 !! 2023-12-14T01:28:28,096 self.initialize_options() 2023-12-14T01:28:28,114 installing to build/bdist.linux-armv7l/wheel 2023-12-14T01:28:28,115 running install 2023-12-14T01:28:28,138 running install_lib 2023-12-14T01:28:28,162 creating build/bdist.linux-armv7l 2023-12-14T01:28:28,163 creating build/bdist.linux-armv7l/wheel 2023-12-14T01:28:28,165 creating build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,166 creating build/bdist.linux-armv7l/wheel/cas/matrix_file 2023-12-14T01:28:28,168 copying build/lib/cas/matrix_file/cxg_resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2023-12-14T01:28:28,170 copying build/lib/cas/matrix_file/base_resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2023-12-14T01:28:28,172 copying build/lib/cas/matrix_file/__init__.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2023-12-14T01:28:28,173 copying build/lib/cas/matrix_file/resolver.py -> build/bdist.linux-armv7l/wheel/cas/matrix_file 2023-12-14T01:28:28,175 copying build/lib/cas/reports.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,178 creating build/bdist.linux-armv7l/wheel/cas/accession 2023-12-14T01:28:28,179 copying build/lib/cas/accession/hash_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2023-12-14T01:28:28,181 copying build/lib/cas/accession/incremental_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2023-12-14T01:28:28,182 copying build/lib/cas/accession/__init__.py -> build/bdist.linux-armv7l/wheel/cas/accession 2023-12-14T01:28:28,184 copying build/lib/cas/accession/base_accession_manager.py -> build/bdist.linux-armv7l/wheel/cas/accession 2023-12-14T01:28:28,186 creating build/bdist.linux-armv7l/wheel/cas/ingest 2023-12-14T01:28:28,187 copying build/lib/cas/ingest/ingest_user_table.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2023-12-14T01:28:28,189 copying build/lib/cas/ingest/config_schema.yaml -> build/bdist.linux-armv7l/wheel/cas/ingest 2023-12-14T01:28:28,191 copying build/lib/cas/ingest/config_validator.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2023-12-14T01:28:28,193 copying build/lib/cas/ingest/__init__.py -> build/bdist.linux-armv7l/wheel/cas/ingest 2023-12-14T01:28:28,194 copying build/lib/cas/model.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,196 copying build/lib/cas/flatten_data_to_tables.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,199 copying build/lib/cas/__main__.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,201 copying build/lib/cas/anndata_conversion.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,203 copying build/lib/cas/__init__.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,205 copying build/lib/cas/populate_cell_ids.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,207 copying build/lib/cas/flatten_data_to_anndata.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,209 copying build/lib/cas/file_utils.py -> build/bdist.linux-armv7l/wheel/cas 2023-12-14T01:28:28,211 running install_egg_info 2023-12-14T01:28:28,240 Copying src/cas_tools.egg-info to build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev14-py3.11.egg-info 2023-12-14T01:28:28,251 running install_scripts 2023-12-14T01:28:28,265 creating build/bdist.linux-armv7l/wheel/cas_tools-0.0.1.dev14.dist-info/WHEEL 2023-12-14T01:28:28,268 creating '/tmp/pip-wheel-xc7aio6o/cas_tools-0.0.1.dev14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-14T01:28:28,270 adding 'cas/__init__.py' 2023-12-14T01:28:28,271 adding 'cas/__main__.py' 2023-12-14T01:28:28,273 adding 'cas/anndata_conversion.py' 2023-12-14T01:28:28,275 adding 'cas/file_utils.py' 2023-12-14T01:28:28,276 adding 'cas/flatten_data_to_anndata.py' 2023-12-14T01:28:28,278 adding 'cas/flatten_data_to_tables.py' 2023-12-14T01:28:28,280 adding 'cas/model.py' 2023-12-14T01:28:28,282 adding 'cas/populate_cell_ids.py' 2023-12-14T01:28:28,283 adding 'cas/reports.py' 2023-12-14T01:28:28,285 adding 'cas/accession/__init__.py' 2023-12-14T01:28:28,286 adding 'cas/accession/base_accession_manager.py' 2023-12-14T01:28:28,288 adding 'cas/accession/hash_accession_manager.py' 2023-12-14T01:28:28,289 adding 'cas/accession/incremental_accession_manager.py' 2023-12-14T01:28:28,290 adding 'cas/ingest/__init__.py' 2023-12-14T01:28:28,292 adding 'cas/ingest/config_schema.yaml' 2023-12-14T01:28:28,293 adding 'cas/ingest/config_validator.py' 2023-12-14T01:28:28,295 adding 'cas/ingest/ingest_user_table.py' 2023-12-14T01:28:28,297 adding 'cas/matrix_file/__init__.py' 2023-12-14T01:28:28,298 adding 'cas/matrix_file/base_resolver.py' 2023-12-14T01:28:28,299 adding 'cas/matrix_file/cxg_resolver.py' 2023-12-14T01:28:28,300 adding 'cas/matrix_file/resolver.py' 2023-12-14T01:28:28,303 adding 'cas_tools-0.0.1.dev14.dist-info/METADATA' 2023-12-14T01:28:28,304 adding 'cas_tools-0.0.1.dev14.dist-info/WHEEL' 2023-12-14T01:28:28,305 adding 'cas_tools-0.0.1.dev14.dist-info/entry_points.txt' 2023-12-14T01:28:28,306 adding 'cas_tools-0.0.1.dev14.dist-info/top_level.txt' 2023-12-14T01:28:28,307 adding 'cas_tools-0.0.1.dev14.dist-info/RECORD' 2023-12-14T01:28:28,308 removing build/bdist.linux-armv7l/wheel 2023-12-14T01:28:28,426 Building wheel for cas-tools (setup.py): finished with status 'done' 2023-12-14T01:28:28,429 Created wheel for cas-tools: filename=cas_tools-0.0.1.dev14-py3-none-any.whl size=25199 sha256=0ea8f51a2a54a73c13c73f9db360c2f3f711335a1eca2627d841cc172bf45db1 2023-12-14T01:28:28,430 Stored in directory: /tmp/pip-ephem-wheel-cache-wfq32qbx/wheels/13/0a/4a/3f05bb98266e6477025d0f068281fc309ac56859a31542871a 2023-12-14T01:28:28,440 Successfully built cas-tools 2023-12-14T01:28:28,443 Removed build tracker: '/tmp/pip-build-tracker-6uhl03pf'