2023-12-14T01:20:56,106 Created temporary directory: /tmp/pip-build-tracker-wo1cgim4
2023-12-14T01:20:56,107 Initialized build tracking at /tmp/pip-build-tracker-wo1cgim4
2023-12-14T01:20:56,108 Created build tracker: /tmp/pip-build-tracker-wo1cgim4
2023-12-14T01:20:56,108 Entered build tracker: /tmp/pip-build-tracker-wo1cgim4
2023-12-14T01:20:56,109 Created temporary directory: /tmp/pip-wheel-e8uf7y6o
2023-12-14T01:20:56,112 Created temporary directory: /tmp/pip-ephem-wheel-cache-p11jxfbx
2023-12-14T01:20:56,134 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T01:20:56,138 2 location(s) to search for versions of moleculekit:
2023-12-14T01:20:56,138 * https://pypi.org/simple/moleculekit/
2023-12-14T01:20:56,138 * https://www.piwheels.org/simple/moleculekit/
2023-12-14T01:20:56,138 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-12-14T01:20:56,139 Getting page https://pypi.org/simple/moleculekit/
2023-12-14T01:20:56,141 Found index url https://pypi.org/simple/
2023-12-14T01:20:56,480 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-12-14T01:20:56,519   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,519   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-12-14T01:20:56,520   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,521   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-12-14T01:20:56,521   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,523   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,525   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,526   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,531   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,532   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,534   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,535   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,536   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-12-14T01:20:56,536   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,538   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-12-14T01:20:56,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,540   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-12-14T01:20:56,541   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,541   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-12-14T01:20:56,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,543   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-14T01:20:56,543   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-12-14T01:20:56,544   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,545   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,552   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,553   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,554   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-14T01:20:56,665   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-12-14T01:20:56,666   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-12-14T01:20:56,667   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-12-14T01:20:56,668   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-12-14T01:20:56,669   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-12-14T01:20:56,670   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-12-14T01:20:56,671   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-12-14T01:20:56,672   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-12-14T01:20:56,673   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
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2023-12-14T01:20:56,675   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-12-14T01:20:56,676   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-12-14T01:20:56,677   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-12-14T01:20:56,677   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-12-14T01:20:56,678   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-12-14T01:20:56,680   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-12-14T01:20:56,681   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-12-14T01:20:56,682   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-12-14T01:20:56,683   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-12-14T01:20:56,683   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-12-14T01:20:56,684   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-12-14T01:20:56,685   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2023-12-14T01:20:56,686   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2023-12-14T01:20:56,688   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2023-12-14T01:20:56,688 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-12-14T01:20:56,689 Getting page https://www.piwheels.org/simple/moleculekit/
2023-12-14T01:20:56,690 Found index url https://www.piwheels.org/simple/
2023-12-14T01:20:56,858 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-12-14T01:20:57,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,020   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,021   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,022   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,023   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,024   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,025   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,026   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,027   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,028   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,029   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,030   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,031   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,032   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,033   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,034   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,035   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,036   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,037   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,038   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,039   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,040   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,041   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,042   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,043   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,044   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,045   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,046   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,047   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,048   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,049   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,050   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,051   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,052   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,053   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,054   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,055   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-14T01:20:57,075   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,076   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,077   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,078   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,079   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,080   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,081   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,082   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,083   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,084   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.8-py3-none-any.whl#sha256=6bb04aee6023e232156e64c6b7dc4510dc0dd6ccc5a0ff5150e2de459d264da4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.7-py3-none-any.whl#sha256=ff4f13b39afd18f94633a4d933baf6fee5e9836a09d545b8bcca21de12600b24 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.6-py3-none-any.whl#sha256=1642c66ce5ad47055acb7eaa76a2c208cf2e5b69c53ba3d24e4b79ebe27dc84d (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.5-py3-none-any.whl#sha256=bc056cd58574a951b4acf332b139c10194619398cd922d83d45906c41aab9c61 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.4-py3-none-any.whl#sha256=1687bee36b78979fa8b86f947d79aaaa7781c7131df7e26128b2bfd587b790fb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-14T01:20:57,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.3-py3-none-any.whl#sha256=f659548ebfafd77ecafad558800c797d4d23e6fcdb9d58e3248da593fd4d7fe7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-14T01:20:57,106 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
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2023-12-14T01:20:57,148 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-12-14T01:20:57,167 Collecting moleculekit==1.8.15
2023-12-14T01:20:57,169   Created temporary directory: /tmp/pip-unpack-ebkz71yi
2023-12-14T01:20:57,301   Downloading moleculekit-1.8.15.tar.gz (6.2 MB)
2023-12-14T01:20:59,698   Added moleculekit==1.8.15 from https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz to build tracker '/tmp/pip-build-tracker-wo1cgim4'
2023-12-14T01:20:59,707   Created temporary directory: /tmp/pip-build-env-xs41tb3u
2023-12-14T01:20:59,711   Installing build dependencies: started
2023-12-14T01:20:59,713   Running command pip subprocess to install build dependencies
2023-12-14T01:21:00,862   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-14T01:21:01,382   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T01:21:02,800   Collecting setuptools
2023-12-14T01:21:02,814     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-14T01:21:03,399     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-14T01:21:03,403     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-14T01:21:03,407     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-14T01:21:03,410     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-14T01:21:03,414     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-14T01:21:03,684   Collecting numpy>=1.18.5
2023-12-14T01:21:03,700     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-12-14T01:21:05,311   Collecting Cython>=0.29.21
2023-12-14T01:21:05,328     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.6-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-12-14T01:21:05,717   Collecting toml
2023-12-14T01:21:05,732     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-12-14T01:21:05,823   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-12-14T01:21:05,837     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-12-14T01:21:08,508   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-12-14T01:21:08,538     Creating /tmp/pip-build-env-xs41tb3u/overlay/local/bin
2023-12-14T01:21:08,541     changing mode of /tmp/pip-build-env-xs41tb3u/overlay/local/bin/versioneer to 755
2023-12-14T01:21:18,749     changing mode of /tmp/pip-build-env-xs41tb3u/overlay/local/bin/f2py to 755
2023-12-14T01:21:22,305     changing mode of /tmp/pip-build-env-xs41tb3u/overlay/local/bin/cygdb to 755
2023-12-14T01:21:22,307     changing mode of /tmp/pip-build-env-xs41tb3u/overlay/local/bin/cython to 755
2023-12-14T01:21:22,309     changing mode of /tmp/pip-build-env-xs41tb3u/overlay/local/bin/cythonize to 755
2023-12-14T01:21:22,354   Successfully installed Cython-3.0.6 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 versioneer-0.28
2023-12-14T01:21:23,101   Installing build dependencies: finished with status 'done'
2023-12-14T01:21:23,104   Getting requirements to build wheel: started
2023-12-14T01:21:23,105   Running command Getting requirements to build wheel
2023-12-14T01:21:53,795   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-12-14T01:21:59,231   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,232   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,233   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,233   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,234   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,235   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,235   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,236   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,236   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,237   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-14T01:21:59,237   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-14T01:21:59,238   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-12-14T01:21:59,238   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-12-14T01:21:59,239   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-12-14T01:21:59,239   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-12-14T01:21:59,240   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-12-14T01:21:59,241   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-12-14T01:21:59,241   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-12-14T01:21:59,242   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-12-14T01:21:59,243   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-12-14T01:21:59,243   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-12-14T01:21:59,244   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2023-12-14T01:21:59,503   running egg_info
2023-12-14T01:21:59,508   writing moleculekit.egg-info/PKG-INFO
2023-12-14T01:21:59,511   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-14T01:21:59,513   writing requirements to moleculekit.egg-info/requires.txt
2023-12-14T01:21:59,515   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-14T01:21:59,542   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,543   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,543   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,544   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,545   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,545   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,546   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,546   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,546   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,547   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,547   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,548   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,548   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,549   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,549   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,550   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,551   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,551   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:21:59,551   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-12-14T01:21:59,552   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-14T01:21:59,570   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
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2023-12-14T01:22:01,245   Getting requirements to build wheel: finished with status 'done'
2023-12-14T01:22:01,258   Installing backend dependencies: started
2023-12-14T01:22:01,260   Running command pip subprocess to install backend dependencies
2023-12-14T01:22:02,478   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-14T01:22:03,034   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T01:22:03,508   Collecting wheel
2023-12-14T01:22:03,522     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2023-12-14T01:22:05,742   Installing collected packages: wheel
2023-12-14T01:22:05,965     Creating /tmp/pip-build-env-xs41tb3u/normal/local/bin
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2023-12-14T01:22:05,979   Successfully installed wheel-0.42.0
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2023-12-14T01:22:06,536   Created temporary directory: /tmp/pip-modern-metadata-4ii0r26g
2023-12-14T01:22:06,538   Preparing metadata (pyproject.toml): started
2023-12-14T01:22:06,540   Running command Preparing metadata (pyproject.toml)
2023-12-14T01:22:08,818   running dist_info
2023-12-14T01:22:08,820   creating /tmp/pip-modern-metadata-4ii0r26g/moleculekit.egg-info
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2023-12-14T01:22:08,888   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:08,889   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:08,889   reading manifest file '/tmp/pip-modern-metadata-4ii0r26g/moleculekit.egg-info/SOURCES.txt'
2023-12-14T01:22:08,890   reading manifest template 'MANIFEST.in'
2023-12-14T01:22:09,168   no previously-included directories found matching 'moleculekit/test-data'
2023-12-14T01:22:09,169   no previously-included directories found matching 'moleculekit/tests'
2023-12-14T01:22:09,170   no previously-included directories found matching 'package'
2023-12-14T01:22:09,171   adding license file 'LICENSE'
2023-12-14T01:22:09,181   writing manifest file '/tmp/pip-modern-metadata-4ii0r26g/moleculekit.egg-info/SOURCES.txt'
2023-12-14T01:22:09,188   creating '/tmp/pip-modern-metadata-4ii0r26g/moleculekit-1.8.15.dist-info'
2023-12-14T01:22:09,417   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-14T01:22:09,421   Source in /tmp/pip-wheel-e8uf7y6o/moleculekit_ed33a9ac9c2840819621344c71a069e4 has version 1.8.15, which satisfies requirement moleculekit==1.8.15 from https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz
2023-12-14T01:22:09,422   Removed moleculekit==1.8.15 from https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz from build tracker '/tmp/pip-build-tracker-wo1cgim4'
2023-12-14T01:22:09,428 Created temporary directory: /tmp/pip-unpack-s9c3s69y
2023-12-14T01:22:09,429 Created temporary directory: /tmp/pip-unpack-po7afutu
2023-12-14T01:22:09,437 Building wheels for collected packages: moleculekit
2023-12-14T01:22:09,441   Created temporary directory: /tmp/pip-wheel-naudzva7
2023-12-14T01:22:09,441   Destination directory: /tmp/pip-wheel-naudzva7
2023-12-14T01:22:09,443   Building wheel for moleculekit (pyproject.toml): started
2023-12-14T01:22:09,445   Running command Building wheel for moleculekit (pyproject.toml)
2023-12-14T01:22:11,599   running bdist_wheel
2023-12-14T01:22:11,613   running build
2023-12-14T01:22:11,614   running build_py
2023-12-14T01:22:11,620   creating build
2023-12-14T01:22:11,621   creating build/lib.linux-armv7l-cpython-311
2023-12-14T01:22:11,622   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,623   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,625   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,628   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,629   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,631   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,634   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,636   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,639   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,640   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,642   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,643   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,645   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,647   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,651   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,653   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,655   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,656   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,658   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,660   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,662   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,663   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:11,667   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-14T01:22:11,668   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-14T01:22:11,672   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-14T01:22:11,674   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-14T01:22:11,676   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,677   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,680   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,682   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,684   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,686   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,688   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-14T01:22:11,692   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-14T01:22:11,693   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-14T01:22:11,696   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-14T01:22:11,698   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-14T01:22:11,699   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-14T01:22:11,701   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-14T01:22:11,702   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-14T01:22:11,704   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-14T01:22:11,705   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-14T01:22:11,707   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-14T01:22:11,710   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,711   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,714   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,716   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,718   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,719   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,721   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,723   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,725   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,727   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,731   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,733   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,735   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,737   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,739   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-14T01:22:11,742   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,743   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,745   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,747   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,750   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,752   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,754   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,757   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,759   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,761   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,763   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,765   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,767   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,770   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,771   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,774   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-14T01:22:11,776   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-14T01:22:11,777   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-14T01:22:11,779   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-14T01:22:11,781   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-14T01:22:11,782   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-14T01:22:11,785   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-14T01:22:11,786   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-14T01:22:11,787   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-14T01:22:11,789   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-14T01:22:11,791   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-14T01:22:11,794   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-14T01:22:11,794   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-14T01:22:11,797   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-14T01:22:11,800   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-14T01:22:11,801   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-14T01:22:11,804   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-14T01:22:11,805   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-14T01:22:11,806   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-14T01:22:11,809   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-14T01:22:11,810   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-14T01:22:11,812   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-14T01:22:11,813   running egg_info
2023-12-14T01:22:11,818   writing moleculekit.egg-info/PKG-INFO
2023-12-14T01:22:11,821   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-14T01:22:11,823   writing requirements to moleculekit.egg-info/requires.txt
2023-12-14T01:22:11,824   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-14T01:22:11,839   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,839   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,840   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,840   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,842   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,842   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,842   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,843   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,843   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,844   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,844   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,845   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,845   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,846   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,846   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,847   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,848   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,848   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,849   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,849   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,850   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,851   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,851   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,852   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,852   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,853   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,853   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,854   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,854   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,854   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,855   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,856   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,856   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,857   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,858   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,858   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,859   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,859   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,860   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,860   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,861   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,862   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,862   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,863   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,863   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,864   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,864   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,864   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,865   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,865   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,866   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,867   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,867   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,868   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,868   dependency /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-14T01:22:11,869   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-14T01:22:11,869   reading manifest template 'MANIFEST.in'
2023-12-14T01:22:12,062   no previously-included directories found matching 'moleculekit/test-data'
2023-12-14T01:22:12,063   no previously-included directories found matching 'moleculekit/tests'
2023-12-14T01:22:12,064   no previously-included directories found matching 'package'
2023-12-14T01:22:12,065   adding license file 'LICENSE'
2023-12-14T01:22:12,079   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-14T01:22:12,087   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-12-14T01:22:12,088   !!

2023-12-14T01:22:12,089           ********************************************************************************
2023-12-14T01:22:12,090           ############################
2023-12-14T01:22:12,090           # Package would be ignored #
2023-12-14T01:22:12,090           ############################
2023-12-14T01:22:12,091           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-12-14T01:22:12,091           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,092           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,093           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-12-14T01:22:12,093           to the `packages` configuration field.

2023-12-14T01:22:12,094           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,095           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,095           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,096           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,097           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,098           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-12-14T01:22:12,098           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-12-14T01:22:12,099           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,099           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,100           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,101           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,102           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,104           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,104                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,105                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,105                 directory, all directories are treated like packages.
2023-12-14T01:22:12,106           ********************************************************************************

2023-12-14T01:22:12,107   !!
2023-12-14T01:22:12,108     check.warn(importable)
2023-12-14T01:22:12,108   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-12-14T01:22:12,109   !!

2023-12-14T01:22:12,110           ********************************************************************************
2023-12-14T01:22:12,110           ############################
2023-12-14T01:22:12,111           # Package would be ignored #
2023-12-14T01:22:12,111           ############################
2023-12-14T01:22:12,112           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-12-14T01:22:12,112           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,114           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,114           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-12-14T01:22:12,115           to the `packages` configuration field.

2023-12-14T01:22:12,116           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,117           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,118           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,119           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,119           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,120           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-12-14T01:22:12,120           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-12-14T01:22:12,121           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,121           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,122           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,122           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,123           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,124           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,125                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,125                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,126                 directory, all directories are treated like packages.
2023-12-14T01:22:12,126           ********************************************************************************

2023-12-14T01:22:12,127   !!
2023-12-14T01:22:12,127     check.warn(importable)
2023-12-14T01:22:12,128   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-12-14T01:22:12,128   !!

2023-12-14T01:22:12,130           ********************************************************************************
2023-12-14T01:22:12,130           ############################
2023-12-14T01:22:12,130           # Package would be ignored #
2023-12-14T01:22:12,131           ############################
2023-12-14T01:22:12,132           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-12-14T01:22:12,132           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,133           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,134           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-12-14T01:22:12,134           to the `packages` configuration field.

2023-12-14T01:22:12,135           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,136           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,136           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,137           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,139           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,140           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-12-14T01:22:12,140           already explicitly excluding 'moleculekit.distance_utils' via
2023-12-14T01:22:12,141           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,141           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,142           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,143           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,144           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,145           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,146                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,147                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,147                 directory, all directories are treated like packages.
2023-12-14T01:22:12,148           ********************************************************************************

2023-12-14T01:22:12,149   !!
2023-12-14T01:22:12,149     check.warn(importable)
2023-12-14T01:22:12,150   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-12-14T01:22:12,150   !!

2023-12-14T01:22:12,151           ********************************************************************************
2023-12-14T01:22:12,151           ############################
2023-12-14T01:22:12,152           # Package would be ignored #
2023-12-14T01:22:12,152           ############################
2023-12-14T01:22:12,153           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-12-14T01:22:12,153           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,154           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,155           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-12-14T01:22:12,155           to the `packages` configuration field.

2023-12-14T01:22:12,157           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,162           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,164           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,168           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,172           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,173           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-12-14T01:22:12,173           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-12-14T01:22:12,174           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,175           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,175           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,176           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,177           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,179           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,179                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,180                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,181                 directory, all directories are treated like packages.
2023-12-14T01:22:12,181           ********************************************************************************

2023-12-14T01:22:12,182   !!
2023-12-14T01:22:12,183     check.warn(importable)
2023-12-14T01:22:12,185   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-12-14T01:22:12,187   !!

2023-12-14T01:22:12,195           ********************************************************************************
2023-12-14T01:22:12,196           ############################
2023-12-14T01:22:12,197           # Package would be ignored #
2023-12-14T01:22:12,197           ############################
2023-12-14T01:22:12,198           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-12-14T01:22:12,199           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,200           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,200           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-12-14T01:22:12,200           to the `packages` configuration field.

2023-12-14T01:22:12,201           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,202           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,202           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,203           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,204           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,205           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-12-14T01:22:12,206           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-12-14T01:22:12,206           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,207           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,207           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,212           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,222           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,224           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,225                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,225                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,226                 directory, all directories are treated like packages.
2023-12-14T01:22:12,226           ********************************************************************************

2023-12-14T01:22:12,227   !!
2023-12-14T01:22:12,228     check.warn(importable)
2023-12-14T01:22:12,228   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-12-14T01:22:12,229   !!

2023-12-14T01:22:12,230           ********************************************************************************
2023-12-14T01:22:12,231           ############################
2023-12-14T01:22:12,231           # Package would be ignored #
2023-12-14T01:22:12,232           ############################
2023-12-14T01:22:12,233           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-12-14T01:22:12,233           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,235           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,237           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-12-14T01:22:12,241           to the `packages` configuration field.

2023-12-14T01:22:12,247           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,248           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,248           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,250           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,251           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,252           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-12-14T01:22:12,252           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-12-14T01:22:12,253           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,253           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,254           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,255           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,256           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,257           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,257                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,258                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,258                 directory, all directories are treated like packages.
2023-12-14T01:22:12,259           ********************************************************************************

2023-12-14T01:22:12,259   !!
2023-12-14T01:22:12,260     check.warn(importable)
2023-12-14T01:22:12,260   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-12-14T01:22:12,261   !!

2023-12-14T01:22:12,262           ********************************************************************************
2023-12-14T01:22:12,262           ############################
2023-12-14T01:22:12,263           # Package would be ignored #
2023-12-14T01:22:12,263           ############################
2023-12-14T01:22:12,264           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-12-14T01:22:12,264           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,266           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,266           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-12-14T01:22:12,267           to the `packages` configuration field.

2023-12-14T01:22:12,268           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,269           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,270           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,271           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,272           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,274           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-12-14T01:22:12,274           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-12-14T01:22:12,275           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,275           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,276           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,277           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,278           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,280           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,281                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,281                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,282                 directory, all directories are treated like packages.
2023-12-14T01:22:12,282           ********************************************************************************

2023-12-14T01:22:12,284   !!
2023-12-14T01:22:12,284     check.warn(importable)
2023-12-14T01:22:12,285   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-12-14T01:22:12,285   !!

2023-12-14T01:22:12,287           ********************************************************************************
2023-12-14T01:22:12,287           ############################
2023-12-14T01:22:12,288           # Package would be ignored #
2023-12-14T01:22:12,288           ############################
2023-12-14T01:22:12,289           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-12-14T01:22:12,289           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,290           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,291           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-12-14T01:22:12,291           to the `packages` configuration field.

2023-12-14T01:22:12,292           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,292           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,293           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,294           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,295           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,296           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-12-14T01:22:12,296           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-12-14T01:22:12,297           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,297           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,298           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,299           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,301           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,302           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,303                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,304                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,304                 directory, all directories are treated like packages.
2023-12-14T01:22:12,305           ********************************************************************************

2023-12-14T01:22:12,306   !!
2023-12-14T01:22:12,307     check.warn(importable)
2023-12-14T01:22:12,307   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-12-14T01:22:12,308   !!

2023-12-14T01:22:12,309           ********************************************************************************
2023-12-14T01:22:12,310           ############################
2023-12-14T01:22:12,310           # Package would be ignored #
2023-12-14T01:22:12,311           ############################
2023-12-14T01:22:12,311           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-12-14T01:22:12,312           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,313           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,314           package, please make sure that 'moleculekit.share' is explicitly added
2023-12-14T01:22:12,315           to the `packages` configuration field.

2023-12-14T01:22:12,316           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,317           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,317           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,319           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,319           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,320           If you don't want 'moleculekit.share' to be distributed and are
2023-12-14T01:22:12,321           already explicitly excluding 'moleculekit.share' via
2023-12-14T01:22:12,321           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,322           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,322           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,323           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,327           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,332           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,345                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,361                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,379                 directory, all directories are treated like packages.
2023-12-14T01:22:12,407           ********************************************************************************

2023-12-14T01:22:12,447   !!
2023-12-14T01:22:12,448     check.warn(importable)
2023-12-14T01:22:12,449   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-12-14T01:22:12,449   !!

2023-12-14T01:22:12,450           ********************************************************************************
2023-12-14T01:22:12,450           ############################
2023-12-14T01:22:12,451           # Package would be ignored #
2023-12-14T01:22:12,451           ############################
2023-12-14T01:22:12,452           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-12-14T01:22:12,453           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,454           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,454           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-12-14T01:22:12,455           to the `packages` configuration field.

2023-12-14T01:22:12,456           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,457           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,457           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,459           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,460           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,461           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-12-14T01:22:12,462           already explicitly excluding 'moleculekit.share.atomselect' via
2023-12-14T01:22:12,463           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,464           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,464           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,465           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,467           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,469           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,470                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,470                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,472                 directory, all directories are treated like packages.
2023-12-14T01:22:12,472           ********************************************************************************

2023-12-14T01:22:12,474   !!
2023-12-14T01:22:12,475     check.warn(importable)
2023-12-14T01:22:12,475   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-12-14T01:22:12,476   !!

2023-12-14T01:22:12,477           ********************************************************************************
2023-12-14T01:22:12,478           ############################
2023-12-14T01:22:12,479           # Package would be ignored #
2023-12-14T01:22:12,480           ############################
2023-12-14T01:22:12,480           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-12-14T01:22:12,481           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,482           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,482           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-12-14T01:22:12,483           to the `packages` configuration field.

2023-12-14T01:22:12,484           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,484           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,485           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,486           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,487           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,488           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-12-14T01:22:12,489           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-12-14T01:22:12,490           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,490           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,491           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,492           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,493           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,495           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,495                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,496                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,497                 directory, all directories are treated like packages.
2023-12-14T01:22:12,497           ********************************************************************************

2023-12-14T01:22:12,498   !!
2023-12-14T01:22:12,499     check.warn(importable)
2023-12-14T01:22:12,499   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-12-14T01:22:12,500   !!

2023-12-14T01:22:12,501           ********************************************************************************
2023-12-14T01:22:12,502           ############################
2023-12-14T01:22:12,502           # Package would be ignored #
2023-12-14T01:22:12,503           ############################
2023-12-14T01:22:12,503           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-12-14T01:22:12,504           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,505           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,506           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-12-14T01:22:12,507           to the `packages` configuration field.

2023-12-14T01:22:12,508           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,508           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,509           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,510           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,511           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,512           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-12-14T01:22:12,512           already explicitly excluding 'moleculekit.tmalign' via
2023-12-14T01:22:12,513           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,513           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,514           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,514           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,515           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,517           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,517                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,518                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,518                 directory, all directories are treated like packages.
2023-12-14T01:22:12,518           ********************************************************************************

2023-12-14T01:22:12,519   !!
2023-12-14T01:22:12,520     check.warn(importable)
2023-12-14T01:22:12,520   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-12-14T01:22:12,521   !!

2023-12-14T01:22:12,522           ********************************************************************************
2023-12-14T01:22:12,522           ############################
2023-12-14T01:22:12,523           # Package would be ignored #
2023-12-14T01:22:12,523           ############################
2023-12-14T01:22:12,524           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-12-14T01:22:12,524           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,525           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,526           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-12-14T01:22:12,527           to the `packages` configuration field.

2023-12-14T01:22:12,528           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,528           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,529           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,530           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,531           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,532           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-12-14T01:22:12,533           already explicitly excluding 'moleculekit.tmalign.include' via
2023-12-14T01:22:12,533           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,534           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,534           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,536           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,537           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,538           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,538                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,539                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,539                 directory, all directories are treated like packages.
2023-12-14T01:22:12,540           ********************************************************************************

2023-12-14T01:22:12,540   !!
2023-12-14T01:22:12,541     check.warn(importable)
2023-12-14T01:22:12,541   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-12-14T01:22:12,542   !!

2023-12-14T01:22:12,542           ********************************************************************************
2023-12-14T01:22:12,543           ############################
2023-12-14T01:22:12,543           # Package would be ignored #
2023-12-14T01:22:12,544           ############################
2023-12-14T01:22:12,544           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-12-14T01:22:12,545           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,546           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,546           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-12-14T01:22:12,547           to the `packages` configuration field.

2023-12-14T01:22:12,547           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,548           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,548           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,549           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,550           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,551           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-12-14T01:22:12,552           already explicitly excluding 'moleculekit.tmalign.src' via
2023-12-14T01:22:12,552           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,553           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,553           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,554           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,555           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,557           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,557                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,558                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,558                 directory, all directories are treated like packages.
2023-12-14T01:22:12,559           ********************************************************************************

2023-12-14T01:22:12,560   !!
2023-12-14T01:22:12,561     check.warn(importable)
2023-12-14T01:22:12,561   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-12-14T01:22:12,562   !!

2023-12-14T01:22:12,563           ********************************************************************************
2023-12-14T01:22:12,563           ############################
2023-12-14T01:22:12,564           # Package would be ignored #
2023-12-14T01:22:12,564           ############################
2023-12-14T01:22:12,565           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-12-14T01:22:12,565           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,566           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,566           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-12-14T01:22:12,567           to the `packages` configuration field.

2023-12-14T01:22:12,568           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,568           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,569           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,570           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,570           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,571           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-12-14T01:22:12,572           already explicitly excluding 'moleculekit.wrapping' via
2023-12-14T01:22:12,572           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,573           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,573           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,574           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,575           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,576           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,577                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,577                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,578                 directory, all directories are treated like packages.
2023-12-14T01:22:12,578           ********************************************************************************

2023-12-14T01:22:12,579   !!
2023-12-14T01:22:12,580     check.warn(importable)
2023-12-14T01:22:12,580   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils' is absent from the `packages` configuration.
2023-12-14T01:22:12,581   !!

2023-12-14T01:22:12,582           ********************************************************************************
2023-12-14T01:22:12,582           ############################
2023-12-14T01:22:12,583           # Package would be ignored #
2023-12-14T01:22:12,583           ############################
2023-12-14T01:22:12,584           Python recognizes 'moleculekit.xtc_utils' as an importable package[^1],
2023-12-14T01:22:12,584           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,586           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,586           package, please make sure that 'moleculekit.xtc_utils' is explicitly added
2023-12-14T01:22:12,587           to the `packages` configuration field.

2023-12-14T01:22:12,588           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,588           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,589           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,590           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,591           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,592           If you don't want 'moleculekit.xtc_utils' to be distributed and are
2023-12-14T01:22:12,592           already explicitly excluding 'moleculekit.xtc_utils' via
2023-12-14T01:22:12,593           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,593           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,593           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,594           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,595           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,596           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,597                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,597                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,598                 directory, all directories are treated like packages.
2023-12-14T01:22:12,598           ********************************************************************************

2023-12-14T01:22:12,599   !!
2023-12-14T01:22:12,599     check.warn(importable)
2023-12-14T01:22:12,600   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.include' is absent from the `packages` configuration.
2023-12-14T01:22:12,600   !!

2023-12-14T01:22:12,601           ********************************************************************************
2023-12-14T01:22:12,602           ############################
2023-12-14T01:22:12,602           # Package would be ignored #
2023-12-14T01:22:12,603           ############################
2023-12-14T01:22:12,603           Python recognizes 'moleculekit.xtc_utils.include' as an importable package[^1],
2023-12-14T01:22:12,603           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,604           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,605           package, please make sure that 'moleculekit.xtc_utils.include' is explicitly added
2023-12-14T01:22:12,605           to the `packages` configuration field.

2023-12-14T01:22:12,607           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,607           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,608           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,608           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,609           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,610           If you don't want 'moleculekit.xtc_utils.include' to be distributed and are
2023-12-14T01:22:12,611           already explicitly excluding 'moleculekit.xtc_utils.include' via
2023-12-14T01:22:12,611           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,612           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,612           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,613           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,614           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,616           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,617                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,617                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,618                 directory, all directories are treated like packages.
2023-12-14T01:22:12,618           ********************************************************************************

2023-12-14T01:22:12,620   !!
2023-12-14T01:22:12,620     check.warn(importable)
2023-12-14T01:22:12,620   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.xtc_utils.src' is absent from the `packages` configuration.
2023-12-14T01:22:12,621   !!

2023-12-14T01:22:12,621           ********************************************************************************
2023-12-14T01:22:12,622           ############################
2023-12-14T01:22:12,622           # Package would be ignored #
2023-12-14T01:22:12,623           ############################
2023-12-14T01:22:12,623           Python recognizes 'moleculekit.xtc_utils.src' as an importable package[^1],
2023-12-14T01:22:12,623           but it is absent from setuptools' `packages` configuration.

2023-12-14T01:22:12,624           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T01:22:12,625           package, please make sure that 'moleculekit.xtc_utils.src' is explicitly added
2023-12-14T01:22:12,625           to the `packages` configuration field.

2023-12-14T01:22:12,626           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T01:22:12,626           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T01:22:12,627           instead of `find_packages(...)`/`find:`).

2023-12-14T01:22:12,628           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T01:22:12,629           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T01:22:12,629           If you don't want 'moleculekit.xtc_utils.src' to be distributed and are
2023-12-14T01:22:12,630           already explicitly excluding 'moleculekit.xtc_utils.src' via
2023-12-14T01:22:12,630           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T01:22:12,631           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T01:22:12,631           combination with a more fine grained `package-data` configuration.

2023-12-14T01:22:12,632           You can read more about "package data files" on setuptools documentation page:

2023-12-14T01:22:12,633           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T01:22:12,635           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T01:22:12,635                 even if it does not contain any `.py` files.
2023-12-14T01:22:12,636                 On the other hand, currently there is no concept of package data
2023-12-14T01:22:12,636                 directory, all directories are treated like packages.
2023-12-14T01:22:12,637           ********************************************************************************

2023-12-14T01:22:12,638   !!
2023-12-14T01:22:12,638     check.warn(importable)
2023-12-14T01:22:12,639   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:12,639   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:12,639   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-14T01:22:12,640   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-14T01:22:12,640   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-14T01:22:12,641   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-14T01:22:12,641   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-14T01:22:12,642   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-14T01:22:12,643   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-14T01:22:12,643   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-14T01:22:12,644   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-14T01:22:12,644   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-14T01:22:12,645   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-14T01:22:12,645   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-14T01:22:12,645   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-14T01:22:12,646   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-14T01:22:12,646   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-14T01:22:12,647   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-14T01:22:12,647   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-14T01:22:12,647   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-14T01:22:12,648   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-12-14T01:22:12,648   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,649   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,649   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,650   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,650   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,651   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,651   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,651   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,652   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,652   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,653   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,654   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,654   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,655   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,655   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,656   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,656   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,657   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,657   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,658   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,658   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,659   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,659   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,660   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,660   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,661   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,661   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,661   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,662   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,662   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,663   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,663   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,664   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,664   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,665   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,665   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,666   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,666   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,667   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,667   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,668   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,668   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,669   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,670   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,670   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,671   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,671   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,672   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,672   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,673   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,673   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,673   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,674   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,674   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,675   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,675   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,676   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,676   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,677   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,677   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,678   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,678   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,679   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,679   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,680   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,680   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,681   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,681   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,682   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,682   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,683   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,683   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,684   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,685   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,685   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,686   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,686   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,686   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,687   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,687   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,688   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,688   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,689   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,689   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,690   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,690   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,691   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,691   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,691   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,692   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,694   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,696   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,699   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,701   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,703   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,705   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,707   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,709   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,712   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,714   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,716   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,718   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,720   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,722   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,724   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,726   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,728   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,730   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,732   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,734   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,736   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,738   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,741   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,743   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,745   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,747   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,750   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,752   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,754   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,756   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,758   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,760   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,762   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,764   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,767   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,769   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,771   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,773   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,775   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,778   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,780   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,782   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,784   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,786   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,788   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,790   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,792   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,794   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,796   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,798   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,800   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,802   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,805   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,807   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,809   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,811   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,813   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,815   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,817   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,819   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,821   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,823   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,825   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,827   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,830   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,832   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,834   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,836   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,838   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,840   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,842   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,844   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,846   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,848   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,850   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,852   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,854   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,856   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,858   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,860   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,863   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,865   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,867   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,869   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,871   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,873   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-14T01:22:12,875   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-14T01:22:12,876   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-14T01:22:12,897   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-14T01:22:12,899   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-14T01:22:12,901   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-14T01:22:12,902   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-14T01:22:12,904   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-14T01:22:12,905   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-14T01:22:12,911   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-14T01:22:12,911   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-14T01:22:12,932   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-14T01:22:12,934   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-14T01:22:12,935   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-14T01:22:12,953   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-14T01:22:12,955   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-14T01:22:12,957   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-14T01:22:12,958   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-14T01:22:12,961   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-14T01:22:12,963   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include
2023-12-14T01:22:12,964   creating build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-14T01:22:12,965   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-14T01:22:12,969   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-14T01:22:12,971   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-14T01:22:12,973   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-14T01:22:12,974   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-14T01:22:12,994   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-14T01:22:12,996   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-14T01:22:12,997   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-14T01:22:13,017   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-14T01:22:13,020   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-14T01:22:13,021   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-14T01:22:13,041   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-14T01:22:13,043   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-14T01:22:13,044   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-14T01:22:13,064   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-14T01:22:13,075   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-14T01:22:13,076   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.15'
2023-12-14T01:22:13,076   running build_ext
2023-12-14T01:22:13,087   building 'moleculekit.interactions.hbonds' extension
2023-12-14T01:22:13,088   creating build/temp.linux-armv7l-cpython-311
2023-12-14T01:22:13,088   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-12-14T01:22:13,089   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-14T01:22:13,090   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-14T01:22:13,091   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-12-14T01:22:13,409   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:22:13,409                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:22:13,410                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:22:13,410                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-12-14T01:22:13,411   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:22:13,411      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:22:13,412         |  ^~~~~~~
2023-12-14T01:22:43,877   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:22:44,167   building 'moleculekit.interactions.pipi' extension
2023-12-14T01:22:44,168   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-14T01:22:44,168   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-12-14T01:22:44,472   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:22:44,472                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:22:44,473                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:22:44,474                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-12-14T01:22:44,474   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:22:44,475      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:22:44,475         |  ^~~~~~~
2023-12-14T01:23:17,358   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:23:17,640   building 'moleculekit.interactions.cationpi' extension
2023-12-14T01:23:17,640   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-14T01:23:17,641   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-12-14T01:23:17,947   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:23:17,948                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:23:17,949                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:23:17,949                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-12-14T01:23:17,950   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:23:17,950      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:23:17,951         |  ^~~~~~~
2023-12-14T01:23:50,221   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:23:50,505   building 'moleculekit.interactions.sigmahole' extension
2023-12-14T01:23:50,506   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-14T01:23:50,507   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-12-14T01:23:50,809   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:23:50,810                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:23:50,810                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:23:50,811                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-12-14T01:23:50,812   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:23:50,812      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:23:50,813         |  ^~~~~~~
2023-12-14T01:24:22,814   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:24:23,100   building 'moleculekit.wrapping' extension
2023-12-14T01:24:23,101   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-14T01:24:23,102   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-12-14T01:24:23,408   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:24:23,409                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:24:23,409                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:24:23,410                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-12-14T01:24:23,410   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:24:23,411      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:24:23,411         |  ^~~~~~~
2023-12-14T01:24:53,696   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:24:53,887   building 'moleculekit.bondguesser_utils' extension
2023-12-14T01:24:53,887   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-14T01:24:53,888   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-12-14T01:24:54,190   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:24:54,190                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:24:54,191                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:24:54,191                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-12-14T01:24:54,192   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:24:54,192      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:24:54,193         |  ^~~~~~~
2023-12-14T01:24:56,492   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-12-14T01:24:56,492   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-14T01:24:56,493   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-12-14T01:24:56,494         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-12-14T01:24:56,494   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-14T01:24:56,495   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-12-14T01:24:56,496         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-12-14T01:24:56,497   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-14T01:24:56,497   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-12-14T01:24:56,498         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-12-14T01:24:56,498   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,498   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,499         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,499   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,500   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-14T01:24:56,500         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,501   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,502   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,502         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,503   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,503   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,504         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,505   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,506   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-14T01:24:56,506         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,507   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,508   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,508         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,509   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,510   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,511         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,511   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,512   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-14T01:24:56,512         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,513   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,514   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,515         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,516   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,516   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,517         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,517   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,518   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,518         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,519   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,519   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,520         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,520   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,521   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,521         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,522   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,522   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-14T01:24:56,523         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,524   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,525   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,525         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,526   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,527   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-14T01:24:56,528         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,528   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,529   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,530         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,531   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-14T01:24:56,532         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,532   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,533   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,534         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,534   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-14T01:24:56,535   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-14T01:24:56,536         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,554   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-12-14T01:24:56,554   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-14T01:24:56,555   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-12-14T01:24:56,555         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-12-14T01:24:56,556   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-14T01:24:56,557   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-12-14T01:24:56,558         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-14T01:25:22,919   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:25:23,194   building 'moleculekit.atomselect_utils' extension
2023-12-14T01:25:23,194   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-14T01:25:23,195   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-12-14T01:25:23,500   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:25:23,500                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:25:23,501                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:25:23,502                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-12-14T01:25:23,502   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:25:23,503      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:25:23,504         |  ^~~~~~~
2023-12-14T01:25:26,023   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-12-14T01:25:26,024   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-14T01:25:26,024   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-12-14T01:25:26,025         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-14T01:25:26,030   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-14T01:25:26,031   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-14T01:25:26,032   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-14T01:25:26,032         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-14T01:25:26,038   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-14T01:25:26,039   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-14T01:25:26,039   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-14T01:25:26,040         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-14T01:25:59,833   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:26:00,132   building 'moleculekit.distance_utils' extension
2023-12-14T01:26:00,133   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-14T01:26:00,134   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-12-14T01:26:00,440   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:26:00,440                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:26:00,441                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:26:00,442                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-12-14T01:26:00,443   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:26:00,443      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:26:00,443         |  ^~~~~~~
2023-12-14T01:26:39,116   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:26:39,403   building 'moleculekit.occupancy_utils' extension
2023-12-14T01:26:39,404   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-14T01:26:39,405   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-12-14T01:26:39,714   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:26:39,714                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:26:39,715                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:26:39,715                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-12-14T01:26:39,716   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:26:39,717      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:26:39,717         |  ^~~~~~~
2023-12-14T01:27:06,955   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:27:07,140   building 'moleculekit.xtc' extension
2023-12-14T01:27:07,140   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils
2023-12-14T01:27:07,141   creating build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src
2023-12-14T01:27:07,142   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o
2023-12-14T01:27:07,781   moleculekit/xtc_utils/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,782      66 |         "OK",
2023-12-14T01:27:07,783         |         ^~~~
2023-12-14T01:27:07,784   moleculekit/xtc_utils/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,785      67 |         "Header",
2023-12-14T01:27:07,785         |         ^~~~~~~~
2023-12-14T01:27:07,786   moleculekit/xtc_utils/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,787      68 |         "String",
2023-12-14T01:27:07,788         |         ^~~~~~~~
2023-12-14T01:27:07,788   moleculekit/xtc_utils/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,789      69 |         "Double",
2023-12-14T01:27:07,790         |         ^~~~~~~~
2023-12-14T01:27:07,790   moleculekit/xtc_utils/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,791      70 |         "Integer",
2023-12-14T01:27:07,792         |         ^~~~~~~~~
2023-12-14T01:27:07,792   moleculekit/xtc_utils/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,793      71 |         "Float",
2023-12-14T01:27:07,793         |         ^~~~~~~
2023-12-14T01:27:07,794   moleculekit/xtc_utils/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,794      72 |         "Unsigned integer",
2023-12-14T01:27:07,795         |         ^~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,796   moleculekit/xtc_utils/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,796      73 |         "Compressed 3D coordinate",
2023-12-14T01:27:07,797         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,797   moleculekit/xtc_utils/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,798      74 |         "Closing file",
2023-12-14T01:27:07,799         |         ^~~~~~~~~~~~~~
2023-12-14T01:27:07,799   moleculekit/xtc_utils/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,800      75 |         "Magic number",
2023-12-14T01:27:07,801         |         ^~~~~~~~~~~~~~
2023-12-14T01:27:07,801   moleculekit/xtc_utils/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,802      76 |         "Not enough memory",
2023-12-14T01:27:07,803         |         ^~~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,804   moleculekit/xtc_utils/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,804      77 |         "End of file",
2023-12-14T01:27:07,805         |         ^~~~~~~~~~~~~
2023-12-14T01:27:07,806   moleculekit/xtc_utils/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-14T01:27:07,807      78 |         "File not found"
2023-12-14T01:27:07,807         |         ^~~~~~~~~~~~~~~~
2023-12-14T01:27:07,808   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-14T01:27:07,809   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,809     459 |     while (size >= num && num_of_bits < 32)
2023-12-14T01:27:07,810         |            ~~~~~^~~~~~
2023-12-14T01:27:07,811   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-14T01:27:07,811   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,812     505 |     while (bytes[num_of_bytes] >= num)
2023-12-14T01:27:07,813         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-14T01:27:07,813   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-14T01:27:07,814   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,815     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-14T01:27:07,816         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,816   moleculekit/xtc_utils/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,817     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-12-14T01:27:07,818         |                             ~~^~~~~~~~~~~~~~
2023-12-14T01:27:07,818   moleculekit/xtc_utils/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,819     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-12-14T01:27:07,819         |                             ~~^~~~~~~~~~~~~~~~
2023-12-14T01:27:07,820   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-14T01:27:07,820   moleculekit/xtc_utils/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,821     664 |                 if (lastbits < num_of_bits)
2023-12-14T01:27:07,821         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-12-14T01:27:07,822   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-14T01:27:07,822   moleculekit/xtc_utils/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,823     785 |         if(size3>xfp->buf1size)
2023-12-14T01:27:07,824         |            ~~~~~^~~~~~~~~~~~~~
2023-12-14T01:27:07,824   moleculekit/xtc_utils/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,825     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-14T01:27:07,826         |                          ^
2023-12-14T01:27:07,827   moleculekit/xtc_utils/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,827     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,828         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,829   moleculekit/xtc_utils/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,829     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,830         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,831   moleculekit/xtc_utils/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,832     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,832         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,833   moleculekit/xtc_utils/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,833     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,834         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,835   moleculekit/xtc_utils/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,836     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,836         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,837   moleculekit/xtc_utils/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,838     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-14T01:27:07,838         |                                    ~~~~~~~~~^~~~~~~~
2023-12-14T01:27:07,839   moleculekit/xtc_utils/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,840     756 |         int smallidx,  minidx, maxidx;
2023-12-14T01:27:07,840         |                        ^~~~~~
2023-12-14T01:27:07,841   moleculekit/xtc_utils/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,841     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-14T01:27:07,842         |                                ^~~~~~
2023-12-14T01:27:07,842   moleculekit/xtc_utils/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-14T01:27:07,843     763 |         int errval=1;
2023-12-14T01:27:07,843         |             ^~~~~~
2023-12-14T01:27:07,844   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-14T01:27:07,844   moleculekit/xtc_utils/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,845    1011 |         if(size3>xfp->buf1size)
2023-12-14T01:27:07,845         |            ~~~~~^~~~~~~~~~~~~~
2023-12-14T01:27:07,846   moleculekit/xtc_utils/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,846    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-12-14T01:27:07,847         |                                 ~~~~~~~~^~~~~~~
2023-12-14T01:27:07,848   moleculekit/xtc_utils/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,848    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-14T01:27:07,849         |                           ~~~~~~~~^~~~~~~
2023-12-14T01:27:07,850   moleculekit/xtc_utils/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,850    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-14T01:27:07,851         |                           ~~~~~~~~^~~~~~~
2023-12-14T01:27:07,852   moleculekit/xtc_utils/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,852    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-14T01:27:07,853         |                         ^
2023-12-14T01:27:07,854   moleculekit/xtc_utils/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,854    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-14T01:27:07,855         |                          ^
2023-12-14T01:27:07,856   moleculekit/xtc_utils/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,857    1275 |         if(tmp==(unsigned int)buf2[0])
2023-12-14T01:27:07,857         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,858   moleculekit/xtc_utils/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,859    1001 |         int errval;
2023-12-14T01:27:07,860         |             ^~~~~~
2023-12-14T01:27:07,860   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-14T01:27:07,861   moleculekit/xtc_utils/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,862    1316 |         if(size3>xfp->buf1size)
2023-12-14T01:27:07,863         |            ~~~~~^~~~~~~~~~~~~~
2023-12-14T01:27:07,864   moleculekit/xtc_utils/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,865    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-14T01:27:07,865         |                          ^
2023-12-14T01:27:07,869   moleculekit/xtc_utils/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,869    1289 |         int smallidx,  maxidx, minidx;
2023-12-14T01:27:07,870         |                                ^~~~~~
2023-12-14T01:27:07,870   moleculekit/xtc_utils/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,871    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-14T01:27:07,871         |                                ^~~~~~
2023-12-14T01:27:07,872   moleculekit/xtc_utils/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-14T01:27:07,873    1297 |         int errval=1;
2023-12-14T01:27:07,873         |             ^~~~~~
2023-12-14T01:27:07,874   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-14T01:27:07,875   moleculekit/xtc_utils/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,875    1513 |         if(size3>xfp->buf1size) {
2023-12-14T01:27:07,876         |            ~~~~~^~~~~~~~~~~~~~
2023-12-14T01:27:07,880   moleculekit/xtc_utils/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,881    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-14T01:27:07,882         |                         ^
2023-12-14T01:27:07,882   moleculekit/xtc_utils/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:07,883    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-14T01:27:07,884         |                          ^
2023-12-14T01:27:07,887   moleculekit/xtc_utils/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-14T01:27:07,887    1743 |         if(tmp==(unsigned int)buf2[0])
2023-12-14T01:27:07,888         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-14T01:27:07,888   moleculekit/xtc_utils/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-14T01:27:07,889    1504 |         int errval=1;
2023-12-14T01:27:07,890         |             ^~~~~~
2023-12-14T01:27:10,741   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-12-14T01:27:11,009   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o
2023-12-14T01:27:11,823   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-12-14T01:27:11,824   moleculekit/xtc_utils/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:11,825     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2023-12-14T01:27:11,825         |                                ~~~~~^~~~~~~~
2023-12-14T01:27:11,826   moleculekit/xtc_utils/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-14T01:27:11,827     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-12-14T01:27:11,827         |             ^~~
2023-12-14T01:27:11,836   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-12-14T01:27:11,837   moleculekit/xtc_utils/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-14T01:27:11,837     418 |         int nf3 = nframes * 3;
2023-12-14T01:27:11,838         |             ^~~
2023-12-14T01:27:11,840   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-12-14T01:27:11,840   moleculekit/xtc_utils/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:11,841     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2023-12-14T01:27:11,841         |                                        ~~~~~^~~~~~~~
2023-12-14T01:27:11,843   moleculekit/xtc_utils/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-14T01:27:11,844     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2023-12-14T01:27:11,845         |                                        ~~~~~^~~~~~~~
2023-12-14T01:27:11,846   moleculekit/xtc_utils/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-12-14T01:27:11,847     491 |         int reading_index = 0;
2023-12-14T01:27:11,847         |             ^~~~~~~~~~~~~
2023-12-14T01:27:11,848   moleculekit/xtc_utils/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-12-14T01:27:11,849     492 |         int writing_index = 0;
2023-12-14T01:27:11,850         |             ^~~~~~~~~~~~~
2023-12-14T01:27:12,746   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o
2023-12-14T01:27:13,053   In file included from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-14T01:27:13,053                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-14T01:27:13,054                    from /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-14T01:27:13,055                    from moleculekit/xtc_utils/xtc.cpp:1234:
2023-12-14T01:27:13,055   /tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-14T01:27:13,056      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-14T01:27:13,057         |  ^~~~~~~
2023-12-14T01:27:36,995   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:27:37,274   building 'moleculekit.tmalign' extension
2023-12-14T01:27:37,275   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-14T01:27:37,275   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-14T01:27:37,276   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-12-14T01:28:11,222   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-xs41tb3u/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-12-14T01:28:33,865   In file included from /usr/include/c++/12/vector:70,
2023-12-14T01:28:33,865                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-14T01:28:33,866   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-12-14T01:28:33,867   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-12-14T01:28:33,868     439 |       vector<_Tp, _Alloc>::
2023-12-14T01:28:33,868         |       ^~~~~~~~~~~~~~~~~~~
2023-12-14T01:28:34,669   In file included from /usr/include/c++/12/vector:64:
2023-12-14T01:28:34,670   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-14T01:28:34,671       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20760:32,
2023-12-14T01:28:34,672       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-14T01:28:34,672   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-14T01:28:34,673    1287 |           _M_realloc_insert(end(), __x);
2023-12-14T01:28:34,674         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-14T01:28:34,675   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-14T01:28:34,675       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20774:33,
2023-12-14T01:28:34,676       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-14T01:28:34,677   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-14T01:28:34,678    1287 |           _M_realloc_insert(end(), __x);
2023-12-14T01:28:34,678         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-14T01:28:34,679   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-14T01:28:34,679       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20859:34,
2023-12-14T01:28:34,680       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-14T01:28:34,680   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-14T01:28:34,681    1287 |           _M_realloc_insert(end(), __x);
2023-12-14T01:28:34,681         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-14T01:28:37,047   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-12-14T01:28:37,427   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-14T01:28:37,428   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.15'
2023-12-14T01:28:37,428   installing to build/bdist.linux-armv7l/wheel
2023-12-14T01:28:37,429   running install
2023-12-14T01:28:37,452   running install_lib
2023-12-14T01:28:37,458   creating build/bdist.linux-armv7l
2023-12-14T01:28:37,459   creating build/bdist.linux-armv7l/wheel
2023-12-14T01:28:37,461   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,463   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-14T01:28:37,464   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-14T01:28:37,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-14T01:28:37,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-14T01:28:37,473   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,477   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,484   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,487   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-14T01:28:37,491   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-14T01:28:37,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-14T01:28:37,494   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-14T01:28:37,496   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-14T01:28:37,499   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-14T01:28:37,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,504   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,506   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,508   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:37,517   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-14T01:28:37,519   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-12-14T01:28:37,523   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,524   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,526   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,532   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,534   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,536   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,538   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,540   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,541   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,543   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,545   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,547   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,549   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,553   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,555   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,557   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,561   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,567   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,569   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,571   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,574   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,582   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,588   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,592   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,595   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,613   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,615   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,617   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,621   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,623   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,625   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,636   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,638   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-14T01:28:37,644   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-14T01:28:37,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,655   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,657   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-14T01:28:37,660   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,665   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-14T01:28:37,671   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,673   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,675   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,681   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,696   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,725   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,730   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,754   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,760   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,765   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-12-14T01:28:37,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,782   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,788   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,790   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,792   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,794   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,796   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,798   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,802   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,811   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,817   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,821   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,828   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,830   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,847   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,850   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,852   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,854   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,859   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,861   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,863   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,869   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,874   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,879   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-14T01:28:37,886   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-14T01:28:37,888   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-14T01:28:37,890   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-14T01:28:37,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-14T01:28:38,089   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-14T01:28:38,092   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,094   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,096   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-14T01:28:38,098   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-14T01:28:38,117   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-14T01:28:38,118   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-14T01:28:38,121   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-14T01:28:38,124   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-14T01:28:38,125   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-14T01:28:38,132   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-14T01:28:38,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,160   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,163   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,164   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,167   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,168   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-14T01:28:38,169   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-14T01:28:38,190   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-14T01:28:38,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,216   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,239   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,241   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-14T01:28:38,241   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-14T01:28:38,244   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-14T01:28:38,263   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,293   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-14T01:28:38,294   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-14T01:28:38,296   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-14T01:28:38,315   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-14T01:28:38,338   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-14T01:28:38,339   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-14T01:28:38,360   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-14T01:28:38,363   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-14T01:28:38,364   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-14T01:28:38,386   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-14T01:28:38,388   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,409   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,411   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,433   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-14T01:28:38,434   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-14T01:28:38,436   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-14T01:28:38,438   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-14T01:28:38,439   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-14T01:28:38,442   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-14T01:28:38,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-12-14T01:28:38,446   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-14T01:28:38,447   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-14T01:28:38,450   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-14T01:28:38,452   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-12-14T01:28:38,454   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-12-14T01:28:38,478   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,480   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,525   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,528   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,552   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,555   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-14T01:28:38,556   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-14T01:28:38,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-14T01:28:38,577   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,581   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,598   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,605   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-14T01:28:38,606   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-14T01:28:38,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-14T01:28:38,609   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-14T01:28:38,611   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-14T01:28:38,614   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-14T01:28:38,616   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-14T01:28:38,617   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-14T01:28:38,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-14T01:28:38,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-14T01:28:38,623   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-14T01:28:38,626   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-14T01:28:38,628   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-14T01:28:38,628   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-14T01:28:38,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-14T01:28:38,632   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-14T01:28:38,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-14T01:28:38,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-14T01:28:38,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-14T01:28:38,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-14T01:28:38,641   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,670   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,673   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,677   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,682   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-14T01:28:38,683   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-14T01:28:38,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-14T01:28:38,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,688   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,690   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,692   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,694   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,703   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,705   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,707   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,709   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-14T01:28:38,712   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,727   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,731   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,733   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,735   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,737   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,739   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,741   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-14T01:28:38,747   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-14T01:28:38,747   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-14T01:28:38,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-14T01:28:38,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,770   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,774   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-14T01:28:38,779   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-14T01:28:38,780   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-14T01:28:38,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-14T01:28:38,809   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-14T01:28:38,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-14T01:28:38,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-14T01:28:38,835   running install_egg_info
2023-12-14T01:28:38,841   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.15-py3.11.egg-info
2023-12-14T01:28:38,853   running install_scripts
2023-12-14T01:28:38,903   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.15.dist-info/WHEEL
2023-12-14T01:28:38,906   creating '/tmp/pip-wheel-naudzva7/.tmp-0cb09s58/moleculekit-1.8.15-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-14T01:28:38,909   adding 'moleculekit/__init__.py'
2023-12-14T01:28:38,911   adding 'moleculekit/_version.py'
2023-12-14T01:28:38,913   adding 'moleculekit/align.py'
2023-12-14T01:28:39,231   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:39,243   adding 'moleculekit/bondguesser.py'
2023-12-14T01:28:39,486   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:39,498   adding 'moleculekit/config.py'
2023-12-14T01:28:39,500   adding 'moleculekit/dihedral.py'
2023-12-14T01:28:39,502   adding 'moleculekit/distance.py'
2023-12-14T01:28:39,812   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:39,823   adding 'moleculekit/home.py'
2023-12-14T01:28:39,825   adding 'moleculekit/logging.ini'
2023-12-14T01:28:39,839   adding 'moleculekit/molecule.py'
2023-12-14T01:28:40,067   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:40,076   adding 'moleculekit/opm.py'
2023-12-14T01:28:40,079   adding 'moleculekit/periodictable.py'
2023-12-14T01:28:40,080   adding 'moleculekit/pymolgraphics.py'
2023-12-14T01:28:40,082   adding 'moleculekit/rcsb.py'
2023-12-14T01:28:40,083   adding 'moleculekit/rdkitintegration.py'
2023-12-14T01:28:40,096   adding 'moleculekit/readers.py'
2023-12-14T01:28:40,690   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:40,712   adding 'moleculekit/util.py'
2023-12-14T01:28:40,714   adding 'moleculekit/version.py'
2023-12-14T01:28:40,715   adding 'moleculekit/viewer.py'
2023-12-14T01:28:40,717   adding 'moleculekit/vmd_wrapper'
2023-12-14T01:28:40,719   adding 'moleculekit/vmdgraphics.py'
2023-12-14T01:28:40,722   adding 'moleculekit/vmdviewer.py'
2023-12-14T01:28:40,974   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:40,987   adding 'moleculekit/writers.py'
2023-12-14T01:28:41,247   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:41,256   adding 'moleculekit/atomselect/__init__.py'
2023-12-14T01:28:41,258   adding 'moleculekit/atomselect/analyze.py'
2023-12-14T01:28:41,261   adding 'moleculekit/atomselect/atomselect.py'
2023-12-14T01:28:41,263   adding 'moleculekit/atomselect/languageparser.py'
2023-12-14T01:28:41,366   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-12-14T01:28:41,378   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-12-14T01:28:41,469   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-12-14T01:28:41,478   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-12-14T01:28:41,578   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-12-14T01:28:41,589   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-12-14T01:28:41,591   adding 'moleculekit/interactions/__init__.py'
2023-12-14T01:28:41,869   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:42,134   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:42,146   adding 'moleculekit/interactions/interactions.py'
2023-12-14T01:28:42,422   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:42,705   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-12-14T01:28:42,805   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-12-14T01:28:42,814   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-12-14T01:28:42,905   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-12-14T01:28:42,914   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-12-14T01:28:43,006   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-12-14T01:28:43,016   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-12-14T01:28:43,107   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-12-14T01:28:43,116   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-12-14T01:28:43,202   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-12-14T01:28:43,210   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-12-14T01:28:43,212   adding 'moleculekit/pdbx/__init__.py'
2023-12-14T01:28:43,215   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-12-14T01:28:43,218   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-12-14T01:28:43,221   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-12-14T01:28:43,222   adding 'moleculekit/pdbx/reader/__init__.py'
2023-12-14T01:28:43,224   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-12-14T01:28:43,226   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-12-14T01:28:43,227   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-12-14T01:28:43,229   adding 'moleculekit/pdbx/tests/__init__.py'
2023-12-14T01:28:43,231   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-12-14T01:28:43,232   adding 'moleculekit/pdbx/writer/__init__.py'
2023-12-14T01:28:43,234   adding 'moleculekit/ply/__init__.py'
2023-12-14T01:28:43,238   adding 'moleculekit/ply/lex.py'
2023-12-14T01:28:43,250   adding 'moleculekit/ply/yacc.py'
2023-12-14T01:28:43,252   adding 'moleculekit/projections/__init__.py'
2023-12-14T01:28:43,254   adding 'moleculekit/projections/metriccoordinate.py'
2023-12-14T01:28:43,257   adding 'moleculekit/projections/metricdihedral.py'
2023-12-14T01:28:43,261   adding 'moleculekit/projections/metricdistance.py'
2023-12-14T01:28:43,263   adding 'moleculekit/projections/metricfluctuation.py'
2023-12-14T01:28:43,265   adding 'moleculekit/projections/metricgyration.py'
2023-12-14T01:28:43,269   adding 'moleculekit/projections/metricplumed2.py'
2023-12-14T01:28:43,271   adding 'moleculekit/projections/metricrmsd.py'
2023-12-14T01:28:43,273   adding 'moleculekit/projections/metricsasa.py'
2023-12-14T01:28:43,275   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-12-14T01:28:43,276   adding 'moleculekit/projections/metricshell.py'
2023-12-14T01:28:43,278   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-12-14T01:28:43,280   adding 'moleculekit/projections/metrictmscore.py'
2023-12-14T01:28:43,281   adding 'moleculekit/projections/projection.py'
2023-12-14T01:28:43,283   adding 'moleculekit/projections/util.py'
2023-12-14T01:28:43,285   adding 'moleculekit/share/ALA.cif'
2023-12-14T01:28:43,286   adding 'moleculekit/share/backbone.cif'
2023-12-14T01:28:44,585   adding 'moleculekit/share/opm_sequences.json'
2023-12-14T01:28:44,671   adding 'moleculekit/share/atomselect/atomselect.json'
2023-12-14T01:28:44,676   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-12-14T01:28:44,677   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-12-14T01:28:44,679   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-12-14T01:28:44,680   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-12-14T01:28:44,681   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-12-14T01:28:44,682   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-12-14T01:28:44,684   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-12-14T01:28:44,685   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-12-14T01:28:44,686   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-12-14T01:28:44,688   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-12-14T01:28:44,689   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-12-14T01:28:44,690   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-12-14T01:28:44,691   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-12-14T01:28:44,693   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-12-14T01:28:44,694   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-12-14T01:28:44,695   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-12-14T01:28:44,696   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-12-14T01:28:44,698   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-12-14T01:28:44,699   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-12-14T01:28:44,700   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-12-14T01:28:44,702   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-12-14T01:28:44,703   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-12-14T01:28:44,704   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-12-14T01:28:44,706   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-12-14T01:28:44,707   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-12-14T01:28:44,708   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-12-14T01:28:44,709   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-12-14T01:28:44,711   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-12-14T01:28:44,712   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-12-14T01:28:44,713   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-12-14T01:28:44,714   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-12-14T01:28:44,716   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-12-14T01:28:44,717   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-12-14T01:28:44,718   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-12-14T01:28:44,719   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-12-14T01:28:44,720   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-12-14T01:28:44,722   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-12-14T01:28:44,723   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-12-14T01:28:44,724   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-12-14T01:28:44,725   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-12-14T01:28:44,727   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-12-14T01:28:44,728   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-12-14T01:28:44,729   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-12-14T01:28:44,730   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-12-14T01:28:44,732   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-12-14T01:28:44,733   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-12-14T01:28:44,734   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-12-14T01:28:44,735   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-12-14T01:28:44,737   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-12-14T01:28:44,738   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-12-14T01:28:44,739   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-12-14T01:28:44,740   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-12-14T01:28:44,742   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-12-14T01:28:44,743   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-12-14T01:28:44,744   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-12-14T01:28:44,745   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-12-14T01:28:44,746   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-12-14T01:28:44,748   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-12-14T01:28:44,749   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-12-14T01:28:44,750   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-12-14T01:28:44,751   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-12-14T01:28:44,752   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-12-14T01:28:44,753   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-12-14T01:28:44,754   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-12-14T01:28:44,755   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-12-14T01:28:44,756   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-12-14T01:28:44,758   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-12-14T01:28:44,759   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-12-14T01:28:44,760   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-12-14T01:28:44,761   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-12-14T01:28:44,762   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-12-14T01:28:44,763   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-12-14T01:28:44,765   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-12-14T01:28:44,766   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-12-14T01:28:44,767   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-12-14T01:28:44,768   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-12-14T01:28:44,769   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-12-14T01:28:44,770   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-12-14T01:28:44,772   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-12-14T01:28:44,773   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-12-14T01:28:44,774   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-12-14T01:28:44,775   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-12-14T01:28:44,777   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-12-14T01:28:44,778   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-12-14T01:28:44,779   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-12-14T01:28:44,780   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-12-14T01:28:44,781   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-12-14T01:28:44,783   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-12-14T01:28:44,784   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-12-14T01:28:44,785   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-12-14T01:28:44,786   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-12-14T01:28:44,788   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-12-14T01:28:44,789   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-12-14T01:28:44,790   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-12-14T01:28:44,791   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-12-14T01:28:44,793   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-12-14T01:28:44,794   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-12-14T01:28:44,795   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-12-14T01:28:44,796   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-12-14T01:28:44,798   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-12-14T01:28:44,799   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-12-14T01:28:44,800   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-12-14T01:28:44,801   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-12-14T01:28:44,803   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-12-14T01:28:44,804   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-12-14T01:28:44,805   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-12-14T01:28:44,807   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-12-14T01:28:44,808   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-12-14T01:28:44,809   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-12-14T01:28:44,810   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-12-14T01:28:44,811   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-12-14T01:28:44,812   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-12-14T01:28:44,813   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-12-14T01:28:44,814   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-12-14T01:28:44,816   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-12-14T01:28:44,817   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-12-14T01:28:44,818   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-12-14T01:28:44,819   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-12-14T01:28:44,820   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-12-14T01:28:44,821   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-12-14T01:28:44,822   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-12-14T01:28:44,823   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-12-14T01:28:44,824   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-12-14T01:28:44,826   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-12-14T01:28:44,827   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-12-14T01:28:44,828   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-12-14T01:28:44,829   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-12-14T01:28:44,830   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-12-14T01:28:44,832   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-12-14T01:28:44,833   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-12-14T01:28:44,834   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-12-14T01:28:44,835   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-12-14T01:28:44,836   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-12-14T01:28:44,838   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-12-14T01:28:44,839   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-12-14T01:28:44,840   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-12-14T01:28:44,841   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-12-14T01:28:44,842   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-12-14T01:28:44,844   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-12-14T01:28:44,845   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-12-14T01:28:44,846   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-12-14T01:28:44,847   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-12-14T01:28:44,848   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-12-14T01:28:44,849   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-12-14T01:28:44,851   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-12-14T01:28:44,852   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-12-14T01:28:44,853   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-12-14T01:28:44,854   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-12-14T01:28:44,856   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-12-14T01:28:44,857   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-12-14T01:28:44,858   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-12-14T01:28:44,859   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-12-14T01:28:44,860   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-12-14T01:28:44,862   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-12-14T01:28:44,863   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-12-14T01:28:44,864   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-12-14T01:28:44,866   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-12-14T01:28:44,867   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-12-14T01:28:44,868   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-12-14T01:28:44,869   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-12-14T01:28:44,871   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-12-14T01:28:44,872   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-12-14T01:28:44,873   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-12-14T01:28:44,874   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-12-14T01:28:44,875   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-12-14T01:28:44,876   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-12-14T01:28:44,878   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-12-14T01:28:44,879   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-12-14T01:28:44,880   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-12-14T01:28:44,881   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-12-14T01:28:44,882   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-12-14T01:28:44,883   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-12-14T01:28:44,884   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-12-14T01:28:44,885   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-12-14T01:28:44,886   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-12-14T01:28:44,888   adding 'moleculekit/smallmol/__init__.py'
2023-12-14T01:28:44,893   adding 'moleculekit/smallmol/smallmol.py'
2023-12-14T01:28:44,896   adding 'moleculekit/smallmol/smallmollib.py'
2023-12-14T01:28:44,897   adding 'moleculekit/smallmol/test_smallmol.py'
2023-12-14T01:28:44,899   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-12-14T01:28:44,900   adding 'moleculekit/smallmol/util.py'
2023-12-14T01:28:44,902   adding 'moleculekit/smallmol/tools/__init__.py'
2023-12-14T01:28:44,904   adding 'moleculekit/smallmol/tools/clustering.py'
2023-12-14T01:28:44,905   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-12-14T01:28:44,907   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-12-14T01:28:44,997   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-12-14T01:28:45,005   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-12-14T01:28:45,006   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-12-14T01:28:45,008   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-12-14T01:28:45,025   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-12-14T01:28:45,028   adding 'moleculekit/tools/__init__.py'
2023-12-14T01:28:45,030   adding 'moleculekit/tools/atomtyper.py'
2023-12-14T01:28:45,032   adding 'moleculekit/tools/autosegment.py'
2023-12-14T01:28:45,034   adding 'moleculekit/tools/crystalpacking.py'
2023-12-14T01:28:45,038   adding 'moleculekit/tools/detect.py'
2023-12-14T01:28:45,039   adding 'moleculekit/tools/docking.py'
2023-12-14T01:28:45,041   adding 'moleculekit/tools/graphalignment.py'
2023-12-14T01:28:45,043   adding 'moleculekit/tools/hhblitsprofile.py'
2023-12-14T01:28:45,045   adding 'moleculekit/tools/modelling.py'
2023-12-14T01:28:45,046   adding 'moleculekit/tools/moleculechecks.py'
2023-12-14T01:28:45,052   adding 'moleculekit/tools/preparation.py'
2023-12-14T01:28:45,054   adding 'moleculekit/tools/preparation_customres.py'
2023-12-14T01:28:45,056   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-12-14T01:28:45,059   adding 'moleculekit/tools/voxeldescriptors.py'
2023-12-14T01:28:45,061   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-12-14T01:28:45,062   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-12-14T01:28:45,154   adding 'moleculekit/wrapping/wrapping.cpp'
2023-12-14T01:28:45,163   adding 'moleculekit/wrapping/wrapping.pyx'
2023-12-14T01:28:45,252   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-12-14T01:28:45,260   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-12-14T01:28:45,261   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-12-14T01:28:45,264   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-12-14T01:28:45,266   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-12-14T01:28:45,267   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-12-14T01:28:45,274   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-12-14T01:28:45,276   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-12-14T01:28:45,278   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-12-14T01:28:45,280   adding 'moleculekit-1.8.15.dist-info/LICENSE'
2023-12-14T01:28:45,281   adding 'moleculekit-1.8.15.dist-info/METADATA'
2023-12-14T01:28:45,282   adding 'moleculekit-1.8.15.dist-info/WHEEL'
2023-12-14T01:28:45,283   adding 'moleculekit-1.8.15.dist-info/top_level.txt'
2023-12-14T01:28:45,287   adding 'moleculekit-1.8.15.dist-info/RECORD'
2023-12-14T01:28:45,427   removing build/bdist.linux-armv7l/wheel
2023-12-14T01:28:45,714   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-12-14T01:28:45,997   Created wheel for moleculekit: filename=moleculekit-1.8.15-cp311-cp311-linux_armv7l.whl size=12914152 sha256=99886361a57fcc65b6b75cf5cd232fa059aa1791112dc1122ce857c31fcc735c
2023-12-14T01:28:45,999   Stored in directory: /tmp/pip-ephem-wheel-cache-p11jxfbx/wheels/4a/b7/a6/8dd6b20285e895c17d9fe528e718da98381a73e52fea911362
2023-12-14T01:28:46,022 Successfully built moleculekit
2023-12-14T01:28:46,310 Removed build tracker: '/tmp/pip-build-tracker-wo1cgim4'