2023-12-14T04:32:11,353 Created temporary directory: /tmp/pip-build-tracker-9zm8ppu7
2023-12-14T04:32:11,355 Initialized build tracking at /tmp/pip-build-tracker-9zm8ppu7
2023-12-14T04:32:11,355 Created build tracker: /tmp/pip-build-tracker-9zm8ppu7
2023-12-14T04:32:11,356 Entered build tracker: /tmp/pip-build-tracker-9zm8ppu7
2023-12-14T04:32:11,356 Created temporary directory: /tmp/pip-wheel-ebakrga7
2023-12-14T04:32:11,359 Created temporary directory: /tmp/pip-ephem-wheel-cache-4zbb_zec
2023-12-14T04:32:11,382 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T04:32:11,385 2 location(s) to search for versions of brainglobe-workflows:
2023-12-14T04:32:11,385 * https://pypi.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,385 * https://www.piwheels.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,386 Fetching project page and analyzing links: https://pypi.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,386 Getting page https://pypi.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,388 Found index url https://pypi.org/simple/
2023-12-14T04:32:11,629 Fetched page https://pypi.org/simple/brainglobe-workflows/ as application/vnd.pypi.simple.v1+json
2023-12-14T04:32:11,631   Found link https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9), version: 1.0.0
2023-12-14T04:32:11,631   Skipping link: No binaries permitted for brainglobe-workflows: https://files.pythonhosted.org/packages/fd/3d/3ba19433653c5f8e4e1fefb3453ff6c6fb161c65970589784ad8d493dfc4/brainglobe_workflows-1.0.0-py3-none-any.whl (from https://pypi.org/simple/brainglobe-workflows/) (requires-python:>=3.9)
2023-12-14T04:32:11,632 Fetching project page and analyzing links: https://www.piwheels.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,633 Getting page https://www.piwheels.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,634 Found index url https://www.piwheels.org/simple/
2023-12-14T04:32:11,790 Fetched page https://www.piwheels.org/simple/brainglobe-workflows/ as text/html
2023-12-14T04:32:11,791 Skipping link: not a file: https://www.piwheels.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,792 Skipping link: not a file: https://pypi.org/simple/brainglobe-workflows/
2023-12-14T04:32:11,811 Given no hashes to check 1 links for project 'brainglobe-workflows': discarding no candidates
2023-12-14T04:32:11,831 Collecting brainglobe-workflows==1.0.0
2023-12-14T04:32:11,833   Created temporary directory: /tmp/pip-unpack-o2prg1pm
2023-12-14T04:32:12,043   Downloading brainglobe-workflows-1.0.0.tar.gz (31 kB)
2023-12-14T04:32:12,120   Added brainglobe-workflows==1.0.0 from https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-9zm8ppu7'
2023-12-14T04:32:12,128   Created temporary directory: /tmp/pip-build-env-tja_s9f6
2023-12-14T04:32:12,132   Installing build dependencies: started
2023-12-14T04:32:12,134   Running command pip subprocess to install build dependencies
2023-12-14T04:32:13,291   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2023-12-14T04:32:13,837   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T04:32:15,282   Collecting setuptools>=45
2023-12-14T04:32:15,296     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-14T04:32:15,526   Collecting wheel
2023-12-14T04:32:15,541     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2023-12-14T04:32:15,822   Collecting setuptools_scm>=6.2 (from setuptools_scm[toml]>=6.2)
2023-12-14T04:32:15,837     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
2023-12-14T04:32:16,176   Collecting packaging>=20 (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2)
2023-12-14T04:32:16,191     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2023-12-14T04:32:16,303   Collecting typing-extensions (from setuptools_scm>=6.2->setuptools_scm[toml]>=6.2)
2023-12-14T04:32:16,316     Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB)
2023-12-14T04:32:18,972   Installing collected packages: wheel, typing-extensions, setuptools, packaging, setuptools_scm
2023-12-14T04:32:19,191     Creating /tmp/pip-build-env-tja_s9f6/overlay/local/bin
2023-12-14T04:32:19,193     changing mode of /tmp/pip-build-env-tja_s9f6/overlay/local/bin/wheel to 755
2023-12-14T04:32:21,803   Successfully installed packaging-23.2 setuptools-69.0.2 setuptools_scm-8.0.4 typing-extensions-4.9.0 wheel-0.42.0
2023-12-14T04:32:22,341   Installing build dependencies: finished with status 'done'
2023-12-14T04:32:22,344   Getting requirements to build wheel: started
2023-12-14T04:32:22,346   Running command Getting requirements to build wheel
2023-12-14T04:32:23,277   running egg_info
2023-12-14T04:32:23,283   writing brainglobe_workflows.egg-info/PKG-INFO
2023-12-14T04:32:23,293   writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt
2023-12-14T04:32:23,296   writing entry points to brainglobe_workflows.egg-info/entry_points.txt
2023-12-14T04:32:23,300   writing requirements to brainglobe_workflows.egg-info/requires.txt
2023-12-14T04:32:23,301   writing top-level names to brainglobe_workflows.egg-info/top_level.txt
2023-12-14T04:32:23,339   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-12-14T04:32:23,343   reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:23,346   reading manifest template 'MANIFEST.in'
2023-12-14T04:32:23,347   warning: no previously-included files found matching '.pre-commit-config.yaml'
2023-12-14T04:32:23,348   warning: no previously-included files found matching '*.yaml'
2023-12-14T04:32:23,349   warning: no previously-included files found matching '*.yml'
2023-12-14T04:32:23,350   warning: no previously-included files found matching 'Dockerfile'
2023-12-14T04:32:23,351   warning: no previously-included files found matching '*.ini'
2023-12-14T04:32:23,352   warning: no previously-included files found matching 'asv.conf.json'
2023-12-14T04:32:23,353   warning: no previously-included files found matching 'brainglobe_workflows/cellfinder/default_config.json'
2023-12-14T04:32:23,364   warning: no previously-included files matching '__pycache__' found under directory '*'
2023-12-14T04:32:23,366   warning: no previously-included files matching '*.py[co]' found under directory '*'
2023-12-14T04:32:23,371   warning: no files found matching '*.pxd' anywhere in distribution
2023-12-14T04:32:23,372   no previously-included directories found matching 'benchmarks'
2023-12-14T04:32:23,373   no previously-included directories found matching 'docs'
2023-12-14T04:32:23,374   no previously-included directories found matching 'tests'
2023-12-14T04:32:23,375   no previously-included directories found matching 'resources'
2023-12-14T04:32:23,376   no previously-included directories found matching '.github'
2023-12-14T04:32:23,377   no previously-included directories found matching '.tox'
2023-12-14T04:32:23,378   adding license file 'LICENSE'
2023-12-14T04:32:23,381   writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:23,519   Getting requirements to build wheel: finished with status 'done'
2023-12-14T04:32:23,534   Created temporary directory: /tmp/pip-modern-metadata-g7buqu_f
2023-12-14T04:32:23,537   Preparing metadata (pyproject.toml): started
2023-12-14T04:32:23,538   Running command Preparing metadata (pyproject.toml)
2023-12-14T04:32:24,416   running dist_info
2023-12-14T04:32:24,422   creating /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info
2023-12-14T04:32:24,428   writing /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/PKG-INFO
2023-12-14T04:32:24,435   writing dependency_links to /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/dependency_links.txt
2023-12-14T04:32:24,437   writing entry points to /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/entry_points.txt
2023-12-14T04:32:24,440   writing requirements to /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/requires.txt
2023-12-14T04:32:24,441   writing top-level names to /tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/top_level.txt
2023-12-14T04:32:24,443   writing manifest file '/tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:24,476   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-12-14T04:32:24,479   reading manifest file '/tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:24,481   reading manifest template 'MANIFEST.in'
2023-12-14T04:32:24,482   warning: no previously-included files found matching '.pre-commit-config.yaml'
2023-12-14T04:32:24,483   warning: no previously-included files found matching '*.yaml'
2023-12-14T04:32:24,483   warning: no previously-included files found matching '*.yml'
2023-12-14T04:32:24,483   warning: no previously-included files found matching 'Dockerfile'
2023-12-14T04:32:24,484   warning: no previously-included files found matching '*.ini'
2023-12-14T04:32:24,484   warning: no previously-included files found matching 'asv.conf.json'
2023-12-14T04:32:24,485   warning: no previously-included files found matching 'brainglobe_workflows/cellfinder/default_config.json'
2023-12-14T04:32:24,494   warning: no previously-included files matching '__pycache__' found under directory '*'
2023-12-14T04:32:24,495   warning: no previously-included files matching '*.py[co]' found under directory '*'
2023-12-14T04:32:24,500   warning: no files found matching '*.pxd' anywhere in distribution
2023-12-14T04:32:24,501   no previously-included directories found matching 'benchmarks'
2023-12-14T04:32:24,501   no previously-included directories found matching 'docs'
2023-12-14T04:32:24,502   no previously-included directories found matching 'tests'
2023-12-14T04:32:24,502   no previously-included directories found matching 'resources'
2023-12-14T04:32:24,503   no previously-included directories found matching '.github'
2023-12-14T04:32:24,504   no previously-included directories found matching '.tox'
2023-12-14T04:32:24,504   adding license file 'LICENSE'
2023-12-14T04:32:24,505   writing manifest file '/tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:24,506   creating '/tmp/pip-modern-metadata-g7buqu_f/brainglobe_workflows-1.0.0.dist-info'
2023-12-14T04:32:24,671   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-14T04:32:24,676   Source in /tmp/pip-wheel-ebakrga7/brainglobe-workflows_12dc35e83d48497a8ce6e2ac2bb88dee has version 1.0.0, which satisfies requirement brainglobe-workflows==1.0.0 from https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz
2023-12-14T04:32:24,677   Removed brainglobe-workflows==1.0.0 from https://files.pythonhosted.org/packages/86/ff/7475753a7ca5ced322da02ae703996835522e454697fda6be04040de6f3b/brainglobe-workflows-1.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-9zm8ppu7'
2023-12-14T04:32:24,683 Created temporary directory: /tmp/pip-unpack-wfjipllm
2023-12-14T04:32:24,684 Created temporary directory: /tmp/pip-unpack-o6p4am1z
2023-12-14T04:32:24,732 Building wheels for collected packages: brainglobe-workflows
2023-12-14T04:32:24,736   Created temporary directory: /tmp/pip-wheel-1h1yz576
2023-12-14T04:32:24,736   Destination directory: /tmp/pip-wheel-1h1yz576
2023-12-14T04:32:24,739   Building wheel for brainglobe-workflows (pyproject.toml): started
2023-12-14T04:32:24,740   Running command Building wheel for brainglobe-workflows (pyproject.toml)
2023-12-14T04:32:25,591   running bdist_wheel
2023-12-14T04:32:25,614   running build
2023-12-14T04:32:25,614   running build_py
2023-12-14T04:32:25,621   creating build
2023-12-14T04:32:25,621   creating build/lib
2023-12-14T04:32:25,622   creating build/lib/brainglobe_workflows
2023-12-14T04:32:25,624   copying brainglobe_workflows/__init__.py -> build/lib/brainglobe_workflows
2023-12-14T04:32:25,626   copying brainglobe_workflows/main.py -> build/lib/brainglobe_workflows
2023-12-14T04:32:25,628   running egg_info
2023-12-14T04:32:25,633   writing brainglobe_workflows.egg-info/PKG-INFO
2023-12-14T04:32:25,640   writing dependency_links to brainglobe_workflows.egg-info/dependency_links.txt
2023-12-14T04:32:25,642   writing entry points to brainglobe_workflows.egg-info/entry_points.txt
2023-12-14T04:32:25,645   writing requirements to brainglobe_workflows.egg-info/requires.txt
2023-12-14T04:32:25,646   writing top-level names to brainglobe_workflows.egg-info/top_level.txt
2023-12-14T04:32:25,672   ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any
2023-12-14T04:32:25,675   reading manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:25,677   reading manifest template 'MANIFEST.in'
2023-12-14T04:32:25,679   warning: no previously-included files found matching '.pre-commit-config.yaml'
2023-12-14T04:32:25,680   warning: no previously-included files found matching '*.yaml'
2023-12-14T04:32:25,681   warning: no previously-included files found matching '*.yml'
2023-12-14T04:32:25,682   warning: no previously-included files found matching 'Dockerfile'
2023-12-14T04:32:25,683   warning: no previously-included files found matching '*.ini'
2023-12-14T04:32:25,684   warning: no previously-included files found matching 'asv.conf.json'
2023-12-14T04:32:25,685   warning: no previously-included files found matching 'brainglobe_workflows/cellfinder/default_config.json'
2023-12-14T04:32:25,696   warning: no previously-included files matching '__pycache__' found under directory '*'
2023-12-14T04:32:25,697   warning: no previously-included files matching '*.py[co]' found under directory '*'
2023-12-14T04:32:25,704   warning: no files found matching '*.pxd' anywhere in distribution
2023-12-14T04:32:25,705   no previously-included directories found matching 'benchmarks'
2023-12-14T04:32:25,706   no previously-included directories found matching 'docs'
2023-12-14T04:32:25,707   no previously-included directories found matching 'tests'
2023-12-14T04:32:25,708   no previously-included directories found matching 'resources'
2023-12-14T04:32:25,709   no previously-included directories found matching '.github'
2023-12-14T04:32:25,710   no previously-included directories found matching '.tox'
2023-12-14T04:32:25,710   adding license file 'LICENSE'
2023-12-14T04:32:25,714   writing manifest file 'brainglobe_workflows.egg-info/SOURCES.txt'
2023-12-14T04:32:25,716   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.analyse' is absent from the `packages` configuration.
2023-12-14T04:32:25,717   !!

2023-12-14T04:32:25,718           ********************************************************************************
2023-12-14T04:32:25,719           ############################
2023-12-14T04:32:25,719           # Package would be ignored #
2023-12-14T04:32:25,720           ############################
2023-12-14T04:32:25,720           Python recognizes 'brainglobe_workflows.analyse' as an importable package[^1],
2023-12-14T04:32:25,721           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,722           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,723           package, please make sure that 'brainglobe_workflows.analyse' is explicitly added
2023-12-14T04:32:25,723           to the `packages` configuration field.

2023-12-14T04:32:25,725           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,725           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,726           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,727           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,728           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,729           If you don't want 'brainglobe_workflows.analyse' to be distributed and are
2023-12-14T04:32:25,729           already explicitly excluding 'brainglobe_workflows.analyse' via
2023-12-14T04:32:25,729           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,730           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,730           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,731           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,732           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,733           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,733                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,734                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,734                 directory, all directories are treated like packages.
2023-12-14T04:32:25,735           ********************************************************************************

2023-12-14T04:32:25,736   !!
2023-12-14T04:32:25,736     check.warn(importable)
2023-12-14T04:32:25,737   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.cellfinder' is absent from the `packages` configuration.
2023-12-14T04:32:25,737   !!

2023-12-14T04:32:25,738           ********************************************************************************
2023-12-14T04:32:25,738           ############################
2023-12-14T04:32:25,739           # Package would be ignored #
2023-12-14T04:32:25,739           ############################
2023-12-14T04:32:25,740           Python recognizes 'brainglobe_workflows.cellfinder' as an importable package[^1],
2023-12-14T04:32:25,740           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,742           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,742           package, please make sure that 'brainglobe_workflows.cellfinder' is explicitly added
2023-12-14T04:32:25,742           to the `packages` configuration field.

2023-12-14T04:32:25,743           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,744           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,744           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,745           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,746           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,747           If you don't want 'brainglobe_workflows.cellfinder' to be distributed and are
2023-12-14T04:32:25,748           already explicitly excluding 'brainglobe_workflows.cellfinder' via
2023-12-14T04:32:25,749           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,749           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,750           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,751           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,752           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,754           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,754                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,755                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,756                 directory, all directories are treated like packages.
2023-12-14T04:32:25,756           ********************************************************************************

2023-12-14T04:32:25,757   !!
2023-12-14T04:32:25,758     check.warn(importable)
2023-12-14T04:32:25,758   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.export' is absent from the `packages` configuration.
2023-12-14T04:32:25,758   !!

2023-12-14T04:32:25,759           ********************************************************************************
2023-12-14T04:32:25,760           ############################
2023-12-14T04:32:25,760           # Package would be ignored #
2023-12-14T04:32:25,761           ############################
2023-12-14T04:32:25,761           Python recognizes 'brainglobe_workflows.export' as an importable package[^1],
2023-12-14T04:32:25,762           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,763           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,763           package, please make sure that 'brainglobe_workflows.export' is explicitly added
2023-12-14T04:32:25,764           to the `packages` configuration field.

2023-12-14T04:32:25,765           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,766           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,766           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,767           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,768           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,769           If you don't want 'brainglobe_workflows.export' to be distributed and are
2023-12-14T04:32:25,769           already explicitly excluding 'brainglobe_workflows.export' via
2023-12-14T04:32:25,770           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,770           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,771           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,772           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,773           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,775           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,775                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,776                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,776                 directory, all directories are treated like packages.
2023-12-14T04:32:25,776           ********************************************************************************

2023-12-14T04:32:25,778   !!
2023-12-14T04:32:25,778     check.warn(importable)
2023-12-14T04:32:25,779   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.extract' is absent from the `packages` configuration.
2023-12-14T04:32:25,779   !!

2023-12-14T04:32:25,780           ********************************************************************************
2023-12-14T04:32:25,781           ############################
2023-12-14T04:32:25,781           # Package would be ignored #
2023-12-14T04:32:25,782           ############################
2023-12-14T04:32:25,782           Python recognizes 'brainglobe_workflows.extract' as an importable package[^1],
2023-12-14T04:32:25,783           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,784           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,784           package, please make sure that 'brainglobe_workflows.extract' is explicitly added
2023-12-14T04:32:25,785           to the `packages` configuration field.

2023-12-14T04:32:25,785           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,786           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,786           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,787           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,788           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,789           If you don't want 'brainglobe_workflows.extract' to be distributed and are
2023-12-14T04:32:25,789           already explicitly excluding 'brainglobe_workflows.extract' via
2023-12-14T04:32:25,790           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,790           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,791           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,792           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,793           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,794           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,794                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,795                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,795                 directory, all directories are treated like packages.
2023-12-14T04:32:25,796           ********************************************************************************

2023-12-14T04:32:25,797   !!
2023-12-14T04:32:25,797     check.warn(importable)
2023-12-14T04:32:25,798   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.figures' is absent from the `packages` configuration.
2023-12-14T04:32:25,798   !!

2023-12-14T04:32:25,800           ********************************************************************************
2023-12-14T04:32:25,800           ############################
2023-12-14T04:32:25,801           # Package would be ignored #
2023-12-14T04:32:25,801           ############################
2023-12-14T04:32:25,802           Python recognizes 'brainglobe_workflows.figures' as an importable package[^1],
2023-12-14T04:32:25,803           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,804           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,804           package, please make sure that 'brainglobe_workflows.figures' is explicitly added
2023-12-14T04:32:25,805           to the `packages` configuration field.

2023-12-14T04:32:25,806           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,807           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,807           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,809           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,810           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,811           If you don't want 'brainglobe_workflows.figures' to be distributed and are
2023-12-14T04:32:25,812           already explicitly excluding 'brainglobe_workflows.figures' via
2023-12-14T04:32:25,813           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,813           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,814           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,815           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,816           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,817           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,817                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,818                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,818                 directory, all directories are treated like packages.
2023-12-14T04:32:25,819           ********************************************************************************

2023-12-14T04:32:25,819   !!
2023-12-14T04:32:25,820     check.warn(importable)
2023-12-14T04:32:25,820   /tmp/pip-build-env-tja_s9f6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'brainglobe_workflows.tools' is absent from the `packages` configuration.
2023-12-14T04:32:25,821   !!

2023-12-14T04:32:25,821           ********************************************************************************
2023-12-14T04:32:25,822           ############################
2023-12-14T04:32:25,822           # Package would be ignored #
2023-12-14T04:32:25,823           ############################
2023-12-14T04:32:25,823           Python recognizes 'brainglobe_workflows.tools' as an importable package[^1],
2023-12-14T04:32:25,823           but it is absent from setuptools' `packages` configuration.

2023-12-14T04:32:25,824           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T04:32:25,825           package, please make sure that 'brainglobe_workflows.tools' is explicitly added
2023-12-14T04:32:25,825           to the `packages` configuration field.

2023-12-14T04:32:25,827           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T04:32:25,827           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T04:32:25,828           instead of `find_packages(...)`/`find:`).

2023-12-14T04:32:25,829           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T04:32:25,830           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T04:32:25,832           If you don't want 'brainglobe_workflows.tools' to be distributed and are
2023-12-14T04:32:25,832           already explicitly excluding 'brainglobe_workflows.tools' via
2023-12-14T04:32:25,833           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T04:32:25,833           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T04:32:25,834           combination with a more fine grained `package-data` configuration.

2023-12-14T04:32:25,835           You can read more about "package data files" on setuptools documentation page:

2023-12-14T04:32:25,836           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T04:32:25,837           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T04:32:25,838                 even if it does not contain any `.py` files.
2023-12-14T04:32:25,838                 On the other hand, currently there is no concept of package data
2023-12-14T04:32:25,839                 directory, all directories are treated like packages.
2023-12-14T04:32:25,840           ********************************************************************************

2023-12-14T04:32:25,841   !!
2023-12-14T04:32:25,841     check.warn(importable)
2023-12-14T04:32:25,842   creating build/lib/brainglobe_workflows/analyse
2023-12-14T04:32:25,843   copying brainglobe_workflows/analyse/__init__.py -> build/lib/brainglobe_workflows/analyse
2023-12-14T04:32:25,843   copying brainglobe_workflows/analyse/analyse.py -> build/lib/brainglobe_workflows/analyse
2023-12-14T04:32:25,844   creating build/lib/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,845   copying brainglobe_workflows/cellfinder/__init__.py -> build/lib/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,845   copying brainglobe_workflows/cellfinder/cellfinder_main.py -> build/lib/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,846   creating build/lib/brainglobe_workflows/export
2023-12-14T04:32:25,846   copying brainglobe_workflows/export/__init__.py -> build/lib/brainglobe_workflows/export
2023-12-14T04:32:25,846   copying brainglobe_workflows/export/abc4d.py -> build/lib/brainglobe_workflows/export
2023-12-14T04:32:25,847   copying brainglobe_workflows/export/brainrender.py -> build/lib/brainglobe_workflows/export
2023-12-14T04:32:25,847   copying brainglobe_workflows/export/export.py -> build/lib/brainglobe_workflows/export
2023-12-14T04:32:25,848   creating build/lib/brainglobe_workflows/extract
2023-12-14T04:32:25,848   copying brainglobe_workflows/extract/__init__.py -> build/lib/brainglobe_workflows/extract
2023-12-14T04:32:25,849   copying brainglobe_workflows/extract/extract_cubes.py -> build/lib/brainglobe_workflows/extract
2023-12-14T04:32:25,849   creating build/lib/brainglobe_workflows/figures
2023-12-14T04:32:25,850   copying brainglobe_workflows/figures/__init__.py -> build/lib/brainglobe_workflows/figures
2023-12-14T04:32:25,850   copying brainglobe_workflows/figures/figures.py -> build/lib/brainglobe_workflows/figures
2023-12-14T04:32:25,851   copying brainglobe_workflows/figures/heatmap.py -> build/lib/brainglobe_workflows/figures
2023-12-14T04:32:25,851   creating build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,852   copying brainglobe_workflows/tools/__init__.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,852   copying brainglobe_workflows/tools/image_processing.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,853   copying brainglobe_workflows/tools/parser.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,853   copying brainglobe_workflows/tools/prep.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,854   copying brainglobe_workflows/tools/system.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,854   copying brainglobe_workflows/tools/tools.py -> build/lib/brainglobe_workflows/tools
2023-12-14T04:32:25,855   installing to build/bdist.linux-armv7l/wheel
2023-12-14T04:32:25,855   running install
2023-12-14T04:32:25,856   running install_lib
2023-12-14T04:32:25,856   creating build/bdist.linux-armv7l
2023-12-14T04:32:25,857   creating build/bdist.linux-armv7l/wheel
2023-12-14T04:32:25,857   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows
2023-12-14T04:32:25,858   copying build/lib/brainglobe_workflows/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows
2023-12-14T04:32:25,858   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/figures
2023-12-14T04:32:25,859   copying build/lib/brainglobe_workflows/figures/heatmap.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/figures
2023-12-14T04:32:25,859   copying build/lib/brainglobe_workflows/figures/figures.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/figures
2023-12-14T04:32:25,860   copying build/lib/brainglobe_workflows/figures/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/figures
2023-12-14T04:32:25,860   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/export
2023-12-14T04:32:25,861   copying build/lib/brainglobe_workflows/export/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/export
2023-12-14T04:32:25,862   copying build/lib/brainglobe_workflows/export/abc4d.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/export
2023-12-14T04:32:25,863   copying build/lib/brainglobe_workflows/export/brainrender.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/export
2023-12-14T04:32:25,865   copying build/lib/brainglobe_workflows/export/export.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/export
2023-12-14T04:32:25,867   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/analyse
2023-12-14T04:32:25,868   copying build/lib/brainglobe_workflows/analyse/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/analyse
2023-12-14T04:32:25,870   copying build/lib/brainglobe_workflows/analyse/analyse.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/analyse
2023-12-14T04:32:25,872   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,873   copying build/lib/brainglobe_workflows/cellfinder/cellfinder_main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,876   copying build/lib/brainglobe_workflows/cellfinder/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/cellfinder
2023-12-14T04:32:25,877   copying build/lib/brainglobe_workflows/main.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows
2023-12-14T04:32:25,879   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,880   copying build/lib/brainglobe_workflows/tools/system.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,882   copying build/lib/brainglobe_workflows/tools/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,884   copying build/lib/brainglobe_workflows/tools/tools.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,885   copying build/lib/brainglobe_workflows/tools/prep.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,888   copying build/lib/brainglobe_workflows/tools/parser.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,890   copying build/lib/brainglobe_workflows/tools/image_processing.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/tools
2023-12-14T04:32:25,892   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows/extract
2023-12-14T04:32:25,893   copying build/lib/brainglobe_workflows/extract/__init__.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/extract
2023-12-14T04:32:25,895   copying build/lib/brainglobe_workflows/extract/extract_cubes.py -> build/bdist.linux-armv7l/wheel/brainglobe_workflows/extract
2023-12-14T04:32:25,897   running install_egg_info
2023-12-14T04:32:25,902   Copying brainglobe_workflows.egg-info to build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.0.0-py3.11.egg-info
2023-12-14T04:32:25,915   running install_scripts
2023-12-14T04:32:25,936   creating build/bdist.linux-armv7l/wheel/brainglobe_workflows-1.0.0.dist-info/WHEEL
2023-12-14T04:32:25,938   creating '/tmp/pip-wheel-1h1yz576/.tmp-58mvukxc/brainglobe_workflows-1.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-14T04:32:25,941   adding 'brainglobe_workflows/__init__.py'
2023-12-14T04:32:25,942   adding 'brainglobe_workflows/main.py'
2023-12-14T04:32:25,944   adding 'brainglobe_workflows/analyse/__init__.py'
2023-12-14T04:32:25,946   adding 'brainglobe_workflows/analyse/analyse.py'
2023-12-14T04:32:25,948   adding 'brainglobe_workflows/cellfinder/__init__.py'
2023-12-14T04:32:25,950   adding 'brainglobe_workflows/cellfinder/cellfinder_main.py'
2023-12-14T04:32:25,952   adding 'brainglobe_workflows/export/__init__.py'
2023-12-14T04:32:25,953   adding 'brainglobe_workflows/export/abc4d.py'
2023-12-14T04:32:25,954   adding 'brainglobe_workflows/export/brainrender.py'
2023-12-14T04:32:25,955   adding 'brainglobe_workflows/export/export.py'
2023-12-14T04:32:25,957   adding 'brainglobe_workflows/extract/__init__.py'
2023-12-14T04:32:25,960   adding 'brainglobe_workflows/extract/extract_cubes.py'
2023-12-14T04:32:25,962   adding 'brainglobe_workflows/figures/__init__.py'
2023-12-14T04:32:25,963   adding 'brainglobe_workflows/figures/figures.py'
2023-12-14T04:32:25,964   adding 'brainglobe_workflows/figures/heatmap.py'
2023-12-14T04:32:25,966   adding 'brainglobe_workflows/tools/__init__.py'
2023-12-14T04:32:25,967   adding 'brainglobe_workflows/tools/image_processing.py'
2023-12-14T04:32:25,969   adding 'brainglobe_workflows/tools/parser.py'
2023-12-14T04:32:25,971   adding 'brainglobe_workflows/tools/prep.py'
2023-12-14T04:32:25,972   adding 'brainglobe_workflows/tools/system.py'
2023-12-14T04:32:25,974   adding 'brainglobe_workflows/tools/tools.py'
2023-12-14T04:32:25,976   adding 'brainglobe_workflows-1.0.0.dist-info/LICENSE'
2023-12-14T04:32:25,977   adding 'brainglobe_workflows-1.0.0.dist-info/METADATA'
2023-12-14T04:32:25,978   adding 'brainglobe_workflows-1.0.0.dist-info/WHEEL'
2023-12-14T04:32:25,979   adding 'brainglobe_workflows-1.0.0.dist-info/entry_points.txt'
2023-12-14T04:32:25,980   adding 'brainglobe_workflows-1.0.0.dist-info/top_level.txt'
2023-12-14T04:32:25,981   adding 'brainglobe_workflows-1.0.0.dist-info/RECORD'
2023-12-14T04:32:25,983   removing build/bdist.linux-armv7l/wheel
2023-12-14T04:32:26,116   Building wheel for brainglobe-workflows (pyproject.toml): finished with status 'done'
2023-12-14T04:32:26,121   Created wheel for brainglobe-workflows: filename=brainglobe_workflows-1.0.0-py3-none-any.whl size=33355 sha256=9875e2cf8c7d6256d90d8026fec7102f19d325dd8480202f52100052a04dfcaf
2023-12-14T04:32:26,122   Stored in directory: /tmp/pip-ephem-wheel-cache-4zbb_zec/wheels/0f/4b/d4/b9e23b98a594f798ef86f9e04c83279f1073dabd1abfebc149
2023-12-14T04:32:26,135 Successfully built brainglobe-workflows
2023-12-14T04:32:26,139 Removed build tracker: '/tmp/pip-build-tracker-9zm8ppu7'