2023-12-14T05:28:32,754 Created temporary directory: /tmp/pip-build-tracker-7sf2_ze6 2023-12-14T05:28:32,755 Initialized build tracking at /tmp/pip-build-tracker-7sf2_ze6 2023-12-14T05:28:32,755 Created build tracker: /tmp/pip-build-tracker-7sf2_ze6 2023-12-14T05:28:32,756 Entered build tracker: /tmp/pip-build-tracker-7sf2_ze6 2023-12-14T05:28:32,757 Created temporary directory: /tmp/pip-wheel-bqothrm8 2023-12-14T05:28:32,760 Created temporary directory: /tmp/pip-ephem-wheel-cache-gluc4u0n 2023-12-14T05:28:32,783 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-14T05:28:32,786 2 location(s) to search for versions of sequana: 2023-12-14T05:28:32,786 * https://pypi.org/simple/sequana/ 2023-12-14T05:28:32,786 * https://www.piwheels.org/simple/sequana/ 2023-12-14T05:28:32,787 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2023-12-14T05:28:32,788 Getting page https://pypi.org/simple/sequana/ 2023-12-14T05:28:32,789 Found index url https://pypi.org/simple/ 2023-12-14T05:28:33,055 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2023-12-14T05:28:33,071 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.2 2023-12-14T05:28:33,072 Found link https://files.pythonhosted.org/packages/6f/ca/b84533ab717860e881fdd43a34af23bab7708a6f25dea4769e93be2a4916/sequana-0.0.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.0.3 2023-12-14T05:28:33,073 Found link https://files.pythonhosted.org/packages/33/c0/444bc6350ab385d8839e22708e71d4de51b7928d64b8794f5c94825b4314/sequana-0.1.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.0 2023-12-14T05:28:33,074 Found link https://files.pythonhosted.org/packages/f8/3c/91b80c7b45e5eb1a3ea75e9d802592a9849433e6c2f6c72048cfb3ed8b88/sequana-0.1.1.tar.gz (from https://pypi.org/simple/sequana/), 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https://files.pythonhosted.org/packages/11/62/b23f08433efdfa15bfbb3e4b43bd3c1f2470358c0acc6ccf8ba0e2930651/sequana-0.1.15.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.15 2023-12-14T05:28:33,084 Found link https://files.pythonhosted.org/packages/36/00/175581613c7e7fe2ff3b4649743d4954e5083ffdeccdb09a3610aeb9a83b/sequana-0.1.16.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.16 2023-12-14T05:28:33,084 Found link https://files.pythonhosted.org/packages/49/ad/dbf2095ca4731260fd4e196f3082839e9d66496eafbaf52aedebbb7764df/sequana-0.1.17.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.17.1 2023-12-14T05:28:33,085 Found link https://files.pythonhosted.org/packages/a9/a1/ab99030bd678d3ac5df6304919fe0d5f31d6c725e217d212148017c44b21/sequana-0.1.18.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.18 2023-12-14T05:28:33,086 Found link 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https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2023-12-14T05:28:33,092 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2023-12-14T05:28:33,093 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2023-12-14T05:28:33,093 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2023-12-14T05:28:33,094 Found link 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2023-12-14T05:28:33,353 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.5.0-py3-none-any.whl#sha256=410e59d0dddfb9c8977a537b6aaeb53c664ffe5934aec53b30dda9c317a48b38 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,353 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.2-py3-none-any.whl#sha256=7972b2552d679935fa79ea6fb51b0465efc24cb36547875633f9ac334aebcb8d (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,354 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.4.1-py3-none-any.whl#sha256=4b67e3ac6f5e54aa37b0da900d08a73ec9f5517735d2ae91fb038acab735a773 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,355 Skipping link: No binaries permitted for sequana: 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2023-12-14T05:28:33,357 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.21-py3-none-any.whl#sha256=39c81be55199636ec0613bef138ee06c6484b7fe1fe77cfecd372a3c757a1060 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,357 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,358 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.19-py3-none-any.whl#sha256=072add6f657fd5ba0c484c282d0eae596f1b81bbbe5d73d01ee428afd896b26e (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,358 Skipping link: No binaries permitted for sequana: 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2023-12-14T05:28:33,360 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.14-py3-none-any.whl#sha256=ced50d95b3a00f2f8103c06a1cb6bb4097d8d4a08c461bf26525f6afe8ff75e0 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,361 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,362 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.12-py3-none-any.whl#sha256=3f04e8007283308a1ca403222a81dfa0b39e862fc4b273b877ac7c0515aa1bed (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,362 Skipping link: No binaries permitted for sequana: 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2023-12-14T05:28:33,364 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.7-py3-none-any.whl#sha256=ccad69fd14b518346bb120b0790f15e4e949a563a0b1e560b9410a9d10d00f42 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,365 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.6-py3-none-any.whl#sha256=610326506e644e9df180931d8a20a48852a8196ba9c4d0e9aa6d1acb88d4e615 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,365 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.5-py3-none-any.whl#sha256=6fba4d02c27c802f9371c940699ef0ece1e24bffb7553bcb9720cc07ca2a66aa (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,366 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.4-py3-none-any.whl#sha256=8f3002523e9b7584a718eb2f1282a811eee489863f47e56aff0094be65fd04d0 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,367 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.2-py3-none-any.whl#sha256=489f87ea4af5d8111aaf0b2603e4dbc8d44a47ad6a14eb44b2157490ccc4513c (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,367 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.1-py3-none-any.whl#sha256=4e7dd7cad3fca35158004af8ee06e0ec911f098fb7fbace75e7ae3c35e91a917 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,368 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,368 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,369 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2023-12-14T05:28:33,369 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2023-12-14T05:28:33,370 Skipping link: not a file: https://pypi.org/simple/sequana/ 2023-12-14T05:28:33,400 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2023-12-14T05:28:33,419 Collecting sequana==0.16.4 2023-12-14T05:28:33,422 Created temporary directory: /tmp/pip-unpack-rf42z833 2023-12-14T05:28:33,669 Downloading sequana-0.16.4.tar.gz (2.6 MB) 2023-12-14T05:28:34,803 Added sequana==0.16.4 from https://files.pythonhosted.org/packages/f2/bb/e7b6472a9578c7d3e01b59354fd25ddeec7216c431be969930f8410e356d/sequana-0.16.4.tar.gz to build tracker '/tmp/pip-build-tracker-7sf2_ze6' 2023-12-14T05:28:34,804 Running setup.py (path:/tmp/pip-wheel-bqothrm8/sequana_ce6113fb527142de9882ce50769000db/setup.py) egg_info for package sequana 2023-12-14T05:28:34,805 Created temporary directory: /tmp/pip-pip-egg-info-6xf4ukoa 2023-12-14T05:28:34,806 Preparing metadata (setup.py): started 2023-12-14T05:28:34,807 Running command python setup.py egg_info 2023-12-14T05:28:35,867 running egg_info 2023-12-14T05:28:35,869 creating /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info 2023-12-14T05:28:35,895 writing /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/PKG-INFO 2023-12-14T05:28:35,907 writing dependency_links to /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/dependency_links.txt 2023-12-14T05:28:35,909 writing entry points to /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/entry_points.txt 2023-12-14T05:28:35,914 writing requirements to /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/requires.txt 2023-12-14T05:28:35,915 writing top-level names to /tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/top_level.txt 2023-12-14T05:28:35,916 writing manifest file '/tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/SOURCES.txt' 2023-12-14T05:28:36,127 reading manifest file '/tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/SOURCES.txt' 2023-12-14T05:28:36,129 reading manifest template 'MANIFEST.in' 2023-12-14T05:28:36,131 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-14T05:28:36,133 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-14T05:28:36,237 warning: no files found matching '*rules' under directory '*' 2023-12-14T05:28:36,238 warning: no files found matching 'test/requirements*txt' 2023-12-14T05:28:36,239 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-14T05:28:36,240 warning: no previously-included files matching '*' found under directory 'test' 2023-12-14T05:28:36,241 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-14T05:28:36,242 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-14T05:28:36,242 adding license file 'LICENSE' 2023-12-14T05:28:36,251 writing manifest file '/tmp/pip-pip-egg-info-6xf4ukoa/sequana.egg-info/SOURCES.txt' 2023-12-14T05:28:36,360 Preparing metadata (setup.py): finished with status 'done' 2023-12-14T05:28:36,366 Source in /tmp/pip-wheel-bqothrm8/sequana_ce6113fb527142de9882ce50769000db has version 0.16.4, which satisfies requirement sequana==0.16.4 from https://files.pythonhosted.org/packages/f2/bb/e7b6472a9578c7d3e01b59354fd25ddeec7216c431be969930f8410e356d/sequana-0.16.4.tar.gz 2023-12-14T05:28:36,367 Removed sequana==0.16.4 from https://files.pythonhosted.org/packages/f2/bb/e7b6472a9578c7d3e01b59354fd25ddeec7216c431be969930f8410e356d/sequana-0.16.4.tar.gz from build tracker '/tmp/pip-build-tracker-7sf2_ze6' 2023-12-14T05:28:36,374 Created temporary directory: /tmp/pip-unpack-q4tvtklx 2023-12-14T05:28:36,375 Created temporary directory: /tmp/pip-unpack-8yz4p7qf 2023-12-14T05:28:36,466 Building wheels for collected packages: sequana 2023-12-14T05:28:36,471 Created temporary directory: /tmp/pip-wheel-qunv9__5 2023-12-14T05:28:36,472 Building wheel for sequana (setup.py): started 2023-12-14T05:28:36,473 Destination directory: /tmp/pip-wheel-qunv9__5 2023-12-14T05:28:36,473 Running command python setup.py bdist_wheel 2023-12-14T05:28:37,532 running bdist_wheel 2023-12-14T05:28:37,628 running build 2023-12-14T05:28:37,629 running build_py 2023-12-14T05:28:37,659 creating build 2023-12-14T05:28:37,659 creating build/lib 2023-12-14T05:28:37,660 creating build/lib/sequana 2023-12-14T05:28:37,662 copying sequana/idr.py -> build/lib/sequana 2023-12-14T05:28:37,664 copying sequana/bed.py -> build/lib/sequana 2023-12-14T05:28:37,666 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2023-12-14T05:28:37,668 copying sequana/trf.py -> build/lib/sequana 2023-12-14T05:28:37,671 copying sequana/tools.py -> build/lib/sequana 2023-12-14T05:28:37,673 copying sequana/featurecounts.py -> build/lib/sequana 2023-12-14T05:28:37,676 copying sequana/annotation.py -> build/lib/sequana 2023-12-14T05:28:37,677 copying sequana/fastq.py -> build/lib/sequana 2023-12-14T05:28:37,680 copying sequana/datatools.py -> build/lib/sequana 2023-12-14T05:28:37,682 copying sequana/lazy.py -> build/lib/sequana 2023-12-14T05:28:37,684 copying sequana/krona.py -> build/lib/sequana 2023-12-14T05:28:37,686 copying sequana/macs3.py -> build/lib/sequana 2023-12-14T05:28:37,688 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2023-12-14T05:28:37,690 copying sequana/iem.py -> build/lib/sequana 2023-12-14T05:28:37,693 copying sequana/rnadiff.py -> build/lib/sequana 2023-12-14T05:28:37,696 copying sequana/gtf_fixer.py -> build/lib/sequana 2023-12-14T05:28:37,698 copying sequana/vst.py -> build/lib/sequana 2023-12-14T05:28:37,700 copying sequana/G4hunter.py -> build/lib/sequana 2023-12-14T05:28:37,703 copying sequana/ribodesigner.py -> build/lib/sequana 2023-12-14T05:28:37,705 copying sequana/genbank.py -> build/lib/sequana 2023-12-14T05:28:37,707 copying sequana/pacbio.py -> build/lib/sequana 2023-12-14T05:28:37,710 copying sequana/misc.py -> build/lib/sequana 2023-12-14T05:28:37,712 copying sequana/salmon.py -> build/lib/sequana 2023-12-14T05:28:37,714 copying sequana/compare.py -> build/lib/sequana 2023-12-14T05:28:37,716 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2023-12-14T05:28:37,719 copying sequana/cnv.py -> build/lib/sequana 2023-12-14T05:28:37,721 copying sequana/kegg.py -> build/lib/sequana 2023-12-14T05:28:37,723 copying sequana/assembly.py -> build/lib/sequana 2023-12-14T05:28:37,725 copying sequana/running_median.py -> build/lib/sequana 2023-12-14T05:28:37,727 copying sequana/homer.py -> build/lib/sequana 2023-12-14T05:28:37,728 copying sequana/sequence.py -> build/lib/sequana 2023-12-14T05:28:37,731 copying sequana/gff3.py -> build/lib/sequana 2023-12-14T05:28:37,734 copying sequana/iuapc.py -> build/lib/sequana 2023-12-14T05:28:37,736 copying sequana/stats.py -> build/lib/sequana 2023-12-14T05:28:37,737 copying sequana/contigs.py -> build/lib/sequana 2023-12-14T05:28:37,740 copying sequana/codon.py -> build/lib/sequana 2023-12-14T05:28:37,742 copying sequana/lazyimports.py -> build/lib/sequana 2023-12-14T05:28:37,744 copying sequana/fasta.py -> build/lib/sequana 2023-12-14T05:28:37,746 copying sequana/bedtools.py -> build/lib/sequana 2023-12-14T05:28:37,750 copying sequana/protein.py -> build/lib/sequana 2023-12-14T05:28:37,752 copying sequana/cpg_islands.py -> build/lib/sequana 2023-12-14T05:28:37,753 copying sequana/__init__.py -> build/lib/sequana 2023-12-14T05:28:37,755 copying sequana/mpileup.py -> build/lib/sequana 2023-12-14T05:28:37,757 copying sequana/snpeff.py -> build/lib/sequana 2023-12-14T05:28:37,760 copying sequana/phred.py -> build/lib/sequana 2023-12-14T05:28:37,762 copying sequana/bamtools.py -> build/lib/sequana 2023-12-14T05:28:37,765 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2023-12-14T05:28:37,767 copying sequana/vcf_filter.py -> build/lib/sequana 2023-12-14T05:28:37,769 copying sequana/errors.py -> build/lib/sequana 2023-12-14T05:28:37,771 copying sequana/isoseq.py -> build/lib/sequana 2023-12-14T05:28:37,774 copying sequana/mixture.py -> build/lib/sequana 2023-12-14T05:28:37,776 copying sequana/coverage.py -> build/lib/sequana 2023-12-14T05:28:37,778 copying sequana/frip.py -> build/lib/sequana 2023-12-14T05:28:37,780 copying sequana/mgi.py -> build/lib/sequana 2023-12-14T05:28:37,782 copying sequana/databases.py -> build/lib/sequana 2023-12-14T05:28:37,784 copying sequana/sniffer.py -> build/lib/sequana 2023-12-14T05:28:37,786 copying sequana/taxonomy.py -> build/lib/sequana 2023-12-14T05:28:37,788 copying sequana/find_motif.py -> build/lib/sequana 2023-12-14T05:28:37,790 copying sequana/criteria.py -> build/lib/sequana 2023-12-14T05:28:37,792 copying sequana/fastqc.py -> build/lib/sequana 2023-12-14T05:28:37,794 copying sequana/phantom.py -> build/lib/sequana 2023-12-14T05:28:37,796 copying sequana/cigar.py -> build/lib/sequana 2023-12-14T05:28:37,798 copying sequana/mh.py -> build/lib/sequana 2023-12-14T05:28:37,800 copying sequana/summary.py -> build/lib/sequana 2023-12-14T05:28:37,803 copying sequana/vcftools.py -> build/lib/sequana 2023-12-14T05:28:37,804 copying sequana/canu_scanner.py -> build/lib/sequana 2023-12-14T05:28:37,806 copying sequana/itol.py -> build/lib/sequana 2023-12-14T05:28:37,808 copying sequana/demultiplex.py -> build/lib/sequana 2023-12-14T05:28:37,810 copying sequana/kmer.py -> build/lib/sequana 2023-12-14T05:28:37,813 copying sequana/laa.py -> build/lib/sequana 2023-12-14T05:28:37,816 creating build/lib/sequana/modules_report 2023-12-14T05:28:37,817 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,818 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,820 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,823 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,825 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,827 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,830 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,832 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,833 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,836 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,838 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,839 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,841 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,843 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,845 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,848 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,850 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,853 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,854 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,857 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,859 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2023-12-14T05:28:37,862 creating build/lib/sequana/multiqc 2023-12-14T05:28:37,863 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,865 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,867 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,869 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,872 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,874 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,876 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,878 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,881 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,882 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,885 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,887 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2023-12-14T05:28:37,889 creating build/lib/sequana/plots 2023-12-14T05:28:37,890 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2023-12-14T05:28:37,892 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2023-12-14T05:28:37,893 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2023-12-14T05:28:37,896 creating build/lib/sequana/viz 2023-12-14T05:28:37,897 copying sequana/viz/venn.py -> build/lib/sequana/viz 2023-12-14T05:28:37,899 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2023-12-14T05:28:37,901 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2023-12-14T05:28:37,903 copying sequana/viz/anova.py -> build/lib/sequana/viz 2023-12-14T05:28:37,905 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2023-12-14T05:28:37,907 copying sequana/viz/mds.py -> build/lib/sequana/viz 2023-12-14T05:28:37,909 copying sequana/viz/plotly.py -> build/lib/sequana/viz 2023-12-14T05:28:37,911 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2023-12-14T05:28:37,913 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2023-12-14T05:28:37,915 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2023-12-14T05:28:37,917 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2023-12-14T05:28:37,918 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2023-12-14T05:28:37,921 copying sequana/viz/core.py -> build/lib/sequana/viz 2023-12-14T05:28:37,923 copying sequana/viz/pca.py -> build/lib/sequana/viz 2023-12-14T05:28:37,925 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2023-12-14T05:28:37,928 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2023-12-14T05:28:37,929 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2023-12-14T05:28:37,931 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2023-12-14T05:28:37,933 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2023-12-14T05:28:37,936 creating build/lib/sequana/resources 2023-12-14T05:28:37,937 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2023-12-14T05:28:37,939 creating build/lib/sequana/cython 2023-12-14T05:28:37,940 copying sequana/cython/__init__.py -> build/lib/sequana/cython 2023-12-14T05:28:37,942 copying sequana/cython/setup.py -> build/lib/sequana/cython 2023-12-14T05:28:37,944 creating build/lib/sequana/kraken 2023-12-14T05:28:37,945 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2023-12-14T05:28:37,948 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2023-12-14T05:28:37,950 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2023-12-14T05:28:37,952 creating build/lib/sequana/scripts 2023-12-14T05:28:37,953 copying sequana/scripts/common.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,955 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,957 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,959 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,962 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,964 copying sequana/scripts/utils.py -> build/lib/sequana/scripts 2023-12-14T05:28:37,966 creating build/lib/sequana/enrichment 2023-12-14T05:28:37,967 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,970 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,973 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,975 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,977 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,979 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,981 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,982 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,985 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2023-12-14T05:28:37,988 creating build/lib/sequana/utils 2023-12-14T05:28:37,989 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2023-12-14T05:28:37,991 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2023-12-14T05:28:37,992 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2023-12-14T05:28:37,994 copying sequana/utils/config.py -> build/lib/sequana/utils 2023-12-14T05:28:37,995 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2023-12-14T05:28:37,997 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2023-12-14T05:28:37,999 copying sequana/utils/tree.py -> build/lib/sequana/utils 2023-12-14T05:28:38,002 creating build/lib/sequana/resources/templates 2023-12-14T05:28:38,003 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,004 creating build/lib/sequana/resources/canvas 2023-12-14T05:28:38,005 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2023-12-14T05:28:38,007 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2023-12-14T05:28:38,009 creating build/lib/sequana/resources/testing 2023-12-14T05:28:38,010 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,012 creating build/lib/sequana/resources/images 2023-12-14T05:28:38,013 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2023-12-14T05:28:38,015 creating build/lib/sequana/resources/doc 2023-12-14T05:28:38,016 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,018 creating build/lib/sequana/resources/examples 2023-12-14T05:28:38,018 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2023-12-14T05:28:38,021 creating build/lib/sequana/resources/js 2023-12-14T05:28:38,022 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2023-12-14T05:28:38,024 creating build/lib/sequana/resources/css 2023-12-14T05:28:38,025 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2023-12-14T05:28:38,026 creating build/lib/sequana/resources/snpeff 2023-12-14T05:28:38,027 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2023-12-14T05:28:38,030 creating build/lib/sequana/resources/data 2023-12-14T05:28:38,031 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2023-12-14T05:28:38,033 creating build/lib/sequana/resources/doc/rnaseq_0 2023-12-14T05:28:38,034 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2023-12-14T05:28:38,036 creating build/lib/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:38,037 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:38,039 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-14T05:28:38,040 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2023-12-14T05:28:38,042 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-14T05:28:38,043 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-14T05:28:38,045 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-14T05:28:38,046 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-14T05:28:38,048 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-14T05:28:38,049 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-14T05:28:38,051 creating build/lib/sequana/scripts/main 2023-12-14T05:28:38,052 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,054 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,056 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,058 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,060 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,062 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,064 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,065 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,067 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,069 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,071 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,072 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,074 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,076 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,077 copying sequana/scripts/main/g4hunter.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,080 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,082 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,084 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,086 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,088 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,090 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,091 copying sequana/scripts/main/variants_comparison.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,093 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2023-12-14T05:28:38,196 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2023-12-14T05:28:38,199 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,201 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,203 copying sequana/resources/templates/vcf_diff.html -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,205 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,207 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2023-12-14T05:28:38,210 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,212 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,214 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,222 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,224 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,227 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,229 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,232 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,234 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,241 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,243 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,246 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,260 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,262 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,265 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,267 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,270 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,273 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2023-12-14T05:28:38,275 copying sequana/resources/images/logo_256x256.png -> build/lib/sequana/resources/images 2023-12-14T05:28:38,279 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2023-12-14T05:28:38,282 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2023-12-14T05:28:38,285 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2023-12-14T05:28:38,287 copying sequana/resources/doc/test.fastq -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,291 copying sequana/resources/doc/JB409847.fasta -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,294 copying sequana/resources/doc/test.bam -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,298 copying sequana/resources/doc/measles.fa.sorted.bam -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,306 copying sequana/resources/doc/kraken.out.summary -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,308 copying sequana/resources/doc/test.bam.bai -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,311 copying sequana/resources/doc/test_busco_full_table.tsv -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,314 copying sequana/resources/doc/test_pacbio_subreads.bam -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,325 copying sequana/resources/doc/kraken.out -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,331 copying sequana/resources/doc/measles.fa.sorted.bam.bai -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,333 copying sequana/resources/doc/JB409847.bed -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,343 copying sequana/resources/doc/test_pca.csv -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,348 copying sequana/resources/doc/test_pacbio_subreads.bam.bai -> build/lib/sequana/resources/doc 2023-12-14T05:28:38,350 creating build/lib/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,351 copying sequana/resources/doc/rnadiff/rnadiff.csv -> build/lib/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,355 copying sequana/resources/doc/rnadiff/A_vs_B_degs_DESeq2.csv -> build/lib/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,358 copying sequana/resources/doc/rnadiff_compare/rnadiff_bowtie.csv -> build/lib/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:38,363 copying sequana/resources/doc/rnadiff_compare/rnadiff_salmon.csv -> build/lib/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:38,367 creating build/lib/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,368 copying sequana/resources/doc/rnadiff/counts/counts_raw.csv -> build/lib/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,372 copying sequana/resources/doc/rnadiff/counts/counts_vst_norm.csv -> build/lib/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,375 copying sequana/resources/doc/rnadiff/counts/counts_normed.csv -> build/lib/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,377 creating build/lib/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,378 copying sequana/resources/doc/rnadiff/code/design.csv -> build/lib/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,381 copying sequana/resources/doc/rnadiff/code/overall_dds.csv -> build/lib/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,384 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2023-12-14T05:28:38,386 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2023-12-14T05:28:38,389 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2023-12-14T05:28:38,392 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,394 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,396 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,400 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,402 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,407 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,410 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,413 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,416 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,425 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,428 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,434 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,440 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2023-12-14T05:28:38,442 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2023-12-14T05:28:38,447 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2023-12-14T05:28:38,450 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-14T05:28:38,453 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2023-12-14T05:28:38,455 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2023-12-14T05:28:38,458 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2023-12-14T05:28:38,461 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2023-12-14T05:28:38,463 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2023-12-14T05:28:38,466 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2023-12-14T05:28:38,469 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-14T05:28:38,474 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2023-12-14T05:28:38,487 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2023-12-14T05:28:38,490 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2023-12-14T05:28:38,496 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2023-12-14T05:28:38,545 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-14T05:28:38,546 !! 2023-12-14T05:28:38,547 ******************************************************************************** 2023-12-14T05:28:38,547 Please avoid running ``setup.py`` directly. 2023-12-14T05:28:38,548 Instead, use pypa/build, pypa/installer or other 2023-12-14T05:28:38,548 standards-based tools. 2023-12-14T05:28:38,550 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-14T05:28:38,550 ******************************************************************************** 2023-12-14T05:28:38,551 !! 2023-12-14T05:28:38,552 self.initialize_options() 2023-12-14T05:28:38,572 installing to build/bdist.linux-armv7l/wheel 2023-12-14T05:28:38,572 running install 2023-12-14T05:28:38,596 running install_lib 2023-12-14T05:28:38,620 creating build/bdist.linux-armv7l 2023-12-14T05:28:38,621 creating build/bdist.linux-armv7l/wheel 2023-12-14T05:28:38,624 creating build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,625 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,627 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,629 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,632 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,634 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,636 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,639 copying build/lib/sequana/annotation.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,641 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,643 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,645 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,647 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,649 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,651 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,654 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,656 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,659 copying build/lib/sequana/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,661 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,663 copying build/lib/sequana/G4hunter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,665 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,667 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,670 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,673 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,675 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,677 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,680 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,681 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,683 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,685 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,687 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,690 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,692 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,694 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,696 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,698 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,701 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,702 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,705 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,707 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,709 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,712 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,714 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,717 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,719 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,721 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,725 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,728 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2023-12-14T05:28:38,731 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,733 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,735 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,737 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,739 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,742 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,743 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,746 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,748 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,750 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,753 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,755 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,757 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,759 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,761 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,763 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,765 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,767 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,769 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2023-12-14T05:28:38,771 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,773 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,776 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,779 creating build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-14T05:28:38,780 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-14T05:28:38,782 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-14T05:28:38,783 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2023-12-14T05:28:38,785 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,787 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,789 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,792 creating build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,793 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,795 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,797 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,799 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,801 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,803 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,805 copying build/lib/sequana/viz/plotly.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,807 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,810 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,812 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,814 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,816 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,818 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,820 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,822 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,824 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,826 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,828 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,831 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2023-12-14T05:28:38,832 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,835 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,837 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:38,840 creating build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-14T05:28:38,841 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,842 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,844 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,846 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,848 copying build/lib/sequana/resources/templates/vcf_diff.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,850 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,852 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2023-12-14T05:28:38,854 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-14T05:28:38,854 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-14T05:28:38,857 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2023-12-14T05:28:38,859 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,860 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,868 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,870 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,872 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,874 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,876 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,878 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,879 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,888 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,889 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,891 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,893 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,906 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,908 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,910 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,912 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,914 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,916 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,918 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2023-12-14T05:28:38,921 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,921 copying build/lib/sequana/resources/images/logo_256x256.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,926 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,927 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,930 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,932 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2023-12-14T05:28:38,934 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,936 copying build/lib/sequana/resources/doc/test.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,939 copying build/lib/sequana/resources/doc/JB409847.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,941 copying build/lib/sequana/resources/doc/test.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,945 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,946 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,947 copying build/lib/sequana/resources/doc/rnadiff/counts/counts_raw.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,950 copying build/lib/sequana/resources/doc/rnadiff/counts/counts_vst_norm.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,952 copying build/lib/sequana/resources/doc/rnadiff/counts/counts_normed.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/counts 2023-12-14T05:28:38,955 copying build/lib/sequana/resources/doc/rnadiff/rnadiff.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,958 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,959 copying build/lib/sequana/resources/doc/rnadiff/code/design.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,961 copying build/lib/sequana/resources/doc/rnadiff/code/overall_dds.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff/code 2023-12-14T05:28:38,964 copying build/lib/sequana/resources/doc/rnadiff/A_vs_B_degs_DESeq2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff 2023-12-14T05:28:38,966 copying build/lib/sequana/resources/doc/measles.fa.sorted.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,972 copying build/lib/sequana/resources/doc/kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,974 copying build/lib/sequana/resources/doc/test.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,976 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,977 copying build/lib/sequana/resources/doc/test_busco_full_table.tsv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,980 copying build/lib/sequana/resources/doc/test_pacbio_subreads.bam -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,990 copying build/lib/sequana/resources/doc/kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:38,996 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-14T05:28:38,997 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-14T05:28:38,998 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-14T05:28:38,999 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2023-12-14T05:28:39,001 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2023-12-14T05:28:39,003 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-14T05:28:39,004 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2023-12-14T05:28:39,006 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-14T05:28:39,007 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2023-12-14T05:28:39,009 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2023-12-14T05:28:39,010 copying build/lib/sequana/resources/doc/measles.fa.sorted.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:39,013 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:39,014 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:39,015 copying build/lib/sequana/resources/doc/rnadiff_compare/rnadiff_bowtie.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:39,019 copying build/lib/sequana/resources/doc/rnadiff_compare/rnadiff_salmon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2023-12-14T05:28:39,023 copying build/lib/sequana/resources/doc/JB409847.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:39,034 copying build/lib/sequana/resources/doc/test_pca.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:39,039 copying build/lib/sequana/resources/doc/test_pacbio_subreads.bam.bai -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2023-12-14T05:28:39,041 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2023-12-14T05:28:39,043 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-14T05:28:39,044 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-14T05:28:39,047 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-14T05:28:39,049 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-14T05:28:39,051 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2023-12-14T05:28:39,053 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,054 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,056 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,058 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,062 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,065 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,069 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,070 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,074 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,077 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,079 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,085 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,088 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,092 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,098 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2023-12-14T05:28:39,100 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,101 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,105 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,108 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,110 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,112 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,114 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2023-12-14T05:28:39,117 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-14T05:28:39,118 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-14T05:28:39,120 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2023-12-14T05:28:39,124 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,125 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,129 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,137 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,139 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,142 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,147 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,149 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,152 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,159 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2023-12-14T05:28:39,161 creating build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-14T05:28:39,162 copying build/lib/sequana/cython/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-14T05:28:39,164 copying build/lib/sequana/cython/setup.py -> build/bdist.linux-armv7l/wheel/sequana/cython 2023-12-14T05:28:39,166 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,170 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,173 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,175 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,177 copying build/lib/sequana/mpileup.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,179 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,182 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,185 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-14T05:28:39,186 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-14T05:28:39,189 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-14T05:28:39,192 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2023-12-14T05:28:39,193 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,197 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,200 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,202 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,205 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,208 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,211 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,213 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,215 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,217 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,220 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,223 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,225 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,228 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,230 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,232 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,235 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,235 copying build/lib/sequana/scripts/common.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,238 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,239 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,241 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,243 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,245 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,248 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,250 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,252 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,254 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,255 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,257 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,259 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,261 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,263 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,265 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,266 copying build/lib/sequana/scripts/main/g4hunter.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,268 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,270 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,272 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,274 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,276 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,278 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,280 copying build/lib/sequana/scripts/main/variants_comparison.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,283 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2023-12-14T05:28:39,285 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,286 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,289 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,292 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,294 copying build/lib/sequana/scripts/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2023-12-14T05:28:39,296 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,298 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,301 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,303 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,305 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,307 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,310 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,310 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,313 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,315 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,317 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,319 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,321 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,323 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,325 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,327 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2023-12-14T05:28:39,330 creating build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,331 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,333 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,335 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,336 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,338 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,340 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,342 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2023-12-14T05:28:39,344 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,347 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,348 copying build/lib/sequana/laa.py -> build/bdist.linux-armv7l/wheel/sequana 2023-12-14T05:28:39,351 running install_egg_info 2023-12-14T05:28:39,414 running egg_info 2023-12-14T05:28:39,440 writing sequana.egg-info/PKG-INFO 2023-12-14T05:28:39,451 writing dependency_links to sequana.egg-info/dependency_links.txt 2023-12-14T05:28:39,453 writing entry points to sequana.egg-info/entry_points.txt 2023-12-14T05:28:39,457 writing requirements to sequana.egg-info/requires.txt 2023-12-14T05:28:39,459 writing top-level names to sequana.egg-info/top_level.txt 2023-12-14T05:28:39,591 reading manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-14T05:28:39,599 reading manifest template 'MANIFEST.in' 2023-12-14T05:28:39,602 warning: no previously-included files matching '__pycache__' found under directory '*' 2023-12-14T05:28:39,603 warning: no previously-included files matching '*pyc' found under directory '*' 2023-12-14T05:28:39,896 warning: no files found matching '*rules' under directory '*' 2023-12-14T05:28:39,896 warning: no files found matching 'test/requirements*txt' 2023-12-14T05:28:39,898 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2023-12-14T05:28:39,899 warning: no previously-included files matching '*' found under directory 'test' 2023-12-14T05:28:39,900 warning: no previously-included files matching '*' found under directory 'doc' 2023-12-14T05:28:39,901 warning: no previously-included files found matching 'sequana/rm2.py' 2023-12-14T05:28:39,901 adding license file 'LICENSE' 2023-12-14T05:28:39,913 writing manifest file 'sequana.egg-info/SOURCES.txt' 2023-12-14T05:28:39,915 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.16.4-py3.11.egg-info 2023-12-14T05:28:39,930 running install_scripts 2023-12-14T05:28:39,960 creating build/bdist.linux-armv7l/wheel/sequana-0.16.4.dist-info/WHEEL 2023-12-14T05:28:39,963 creating '/tmp/pip-wheel-qunv9__5/sequana-0.16.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-14T05:28:39,965 adding 'sequana/G4hunter.py' 2023-12-14T05:28:39,967 adding 'sequana/__init__.py' 2023-12-14T05:28:39,968 adding 'sequana/annotation.py' 2023-12-14T05:28:39,969 adding 'sequana/assembly.py' 2023-12-14T05:28:39,977 adding 'sequana/bamtools.py' 2023-12-14T05:28:39,979 adding 'sequana/bed.py' 2023-12-14T05:28:39,988 adding 'sequana/bedtools.py' 2023-12-14T05:28:39,990 adding 'sequana/canu_scanner.py' 2023-12-14T05:28:39,991 adding 'sequana/cigar.py' 2023-12-14T05:28:39,992 adding 'sequana/cnv.py' 2023-12-14T05:28:39,994 adding 'sequana/codon.py' 2023-12-14T05:28:39,996 adding 'sequana/compare.py' 2023-12-14T05:28:39,998 adding 'sequana/contigs.py' 2023-12-14T05:28:40,000 adding 'sequana/coverage.py' 2023-12-14T05:28:40,001 adding 'sequana/cpg_islands.py' 2023-12-14T05:28:40,003 adding 'sequana/criteria.py' 2023-12-14T05:28:40,005 adding 'sequana/databases.py' 2023-12-14T05:28:40,006 adding 'sequana/datatools.py' 2023-12-14T05:28:40,008 adding 'sequana/demultiplex.py' 2023-12-14T05:28:40,009 adding 'sequana/errors.py' 2023-12-14T05:28:40,011 adding 'sequana/fasta.py' 2023-12-14T05:28:40,013 adding 'sequana/fasta_gff_correction.py' 2023-12-14T05:28:40,018 adding 'sequana/fastq.py' 2023-12-14T05:28:40,020 adding 'sequana/fastqc.py' 2023-12-14T05:28:40,023 adding 'sequana/featurecounts.py' 2023-12-14T05:28:40,024 adding 'sequana/find_motif.py' 2023-12-14T05:28:40,026 adding 'sequana/freebayes_bcf_filter.py' 2023-12-14T05:28:40,028 adding 'sequana/freebayes_vcf_filter.py' 2023-12-14T05:28:40,029 adding 'sequana/frip.py' 2023-12-14T05:28:40,031 adding 'sequana/genbank.py' 2023-12-14T05:28:40,034 adding 'sequana/gff3.py' 2023-12-14T05:28:40,036 adding 'sequana/gtf_fixer.py' 2023-12-14T05:28:40,037 adding 'sequana/homer.py' 2023-12-14T05:28:40,039 adding 'sequana/idr.py' 2023-12-14T05:28:40,041 adding 'sequana/iem.py' 2023-12-14T05:28:40,044 adding 'sequana/isoseq.py' 2023-12-14T05:28:40,045 adding 'sequana/itol.py' 2023-12-14T05:28:40,046 adding 'sequana/iuapc.py' 2023-12-14T05:28:40,048 adding 'sequana/kegg.py' 2023-12-14T05:28:40,049 adding 'sequana/kmer.py' 2023-12-14T05:28:40,050 adding 'sequana/krona.py' 2023-12-14T05:28:40,052 adding 'sequana/laa.py' 2023-12-14T05:28:40,054 adding 'sequana/lazy.py' 2023-12-14T05:28:40,055 adding 'sequana/lazyimports.py' 2023-12-14T05:28:40,057 adding 'sequana/macs3.py' 2023-12-14T05:28:40,058 adding 'sequana/mgi.py' 2023-12-14T05:28:40,060 adding 'sequana/mh.py' 2023-12-14T05:28:40,061 adding 'sequana/misc.py' 2023-12-14T05:28:40,063 adding 'sequana/mixture.py' 2023-12-14T05:28:40,065 adding 'sequana/mpileup.py' 2023-12-14T05:28:40,069 adding 'sequana/pacbio.py' 2023-12-14T05:28:40,071 adding 'sequana/pacbio_amplicon.py' 2023-12-14T05:28:40,074 adding 'sequana/phantom.py' 2023-12-14T05:28:40,075 adding 'sequana/phred.py' 2023-12-14T05:28:40,077 adding 'sequana/protein.py' 2023-12-14T05:28:40,079 adding 'sequana/ribodesigner.py' 2023-12-14T05:28:40,085 adding 'sequana/rnadiff.py' 2023-12-14T05:28:40,087 adding 'sequana/running_median.py' 2023-12-14T05:28:40,089 adding 'sequana/salmon.py' 2023-12-14T05:28:40,093 adding 'sequana/sequence.py' 2023-12-14T05:28:40,094 adding 'sequana/sniffer.py' 2023-12-14T05:28:40,096 adding 'sequana/snpeff.py' 2023-12-14T05:28:40,097 adding 'sequana/stats.py' 2023-12-14T05:28:40,099 adding 'sequana/summary.py' 2023-12-14T05:28:40,101 adding 'sequana/taxonomy.py' 2023-12-14T05:28:40,104 adding 'sequana/tools.py' 2023-12-14T05:28:40,106 adding 'sequana/trf.py' 2023-12-14T05:28:40,108 adding 'sequana/vcf_filter.py' 2023-12-14T05:28:40,109 adding 'sequana/vcftools.py' 2023-12-14T05:28:40,111 adding 'sequana/vst.py' 2023-12-14T05:28:40,112 adding 'sequana/cython/__init__.py' 2023-12-14T05:28:40,113 adding 'sequana/cython/setup.py' 2023-12-14T05:28:40,114 adding 'sequana/enrichment/__init__.py' 2023-12-14T05:28:40,116 adding 'sequana/enrichment/gsea.py' 2023-12-14T05:28:40,119 adding 'sequana/enrichment/kegg.py' 2023-12-14T05:28:40,121 adding 'sequana/enrichment/mart.py' 2023-12-14T05:28:40,122 adding 'sequana/enrichment/ontology.py' 2023-12-14T05:28:40,124 adding 'sequana/enrichment/panther.py' 2023-12-14T05:28:40,126 adding 'sequana/enrichment/plot_go_terms.py' 2023-12-14T05:28:40,127 adding 'sequana/enrichment/quickgo.py' 2023-12-14T05:28:40,129 adding 'sequana/enrichment/uniprot_enrichment.py' 2023-12-14T05:28:40,131 adding 'sequana/kraken/__init__.py' 2023-12-14T05:28:40,137 adding 'sequana/kraken/analysis.py' 2023-12-14T05:28:40,139 adding 'sequana/kraken/multikraken.py' 2023-12-14T05:28:40,140 adding 'sequana/modules_report/__init__.py' 2023-12-14T05:28:40,141 adding 'sequana/modules_report/bamqc.py' 2023-12-14T05:28:40,143 adding 'sequana/modules_report/base_module.py' 2023-12-14T05:28:40,145 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2023-12-14T05:28:40,148 adding 'sequana/modules_report/coverage.py' 2023-12-14T05:28:40,150 adding 'sequana/modules_report/cutadapt.py' 2023-12-14T05:28:40,152 adding 'sequana/modules_report/fastq_stats.py' 2023-12-14T05:28:40,153 adding 'sequana/modules_report/fastqc.py' 2023-12-14T05:28:40,154 adding 'sequana/modules_report/joint_calling.py' 2023-12-14T05:28:40,156 adding 'sequana/modules_report/kegg_enrichment.py' 2023-12-14T05:28:40,158 adding 'sequana/modules_report/kraken.py' 2023-12-14T05:28:40,160 adding 'sequana/modules_report/multi_summary.py' 2023-12-14T05:28:40,162 adding 'sequana/modules_report/pacbio_input_bam.py' 2023-12-14T05:28:40,163 adding 'sequana/modules_report/panther_enrichment.py' 2023-12-14T05:28:40,165 adding 'sequana/modules_report/phix.py' 2023-12-14T05:28:40,166 adding 'sequana/modules_report/quast.py' 2023-12-14T05:28:40,169 adding 'sequana/modules_report/rnadiff.py' 2023-12-14T05:28:40,171 adding 'sequana/modules_report/summary.py' 2023-12-14T05:28:40,172 adding 'sequana/modules_report/trf.py' 2023-12-14T05:28:40,174 adding 'sequana/modules_report/uniprot_enrichment.py' 2023-12-14T05:28:40,176 adding 'sequana/modules_report/variant_calling.py' 2023-12-14T05:28:40,177 adding 'sequana/multiqc/__init__.py' 2023-12-14T05:28:40,179 adding 'sequana/multiqc/bamtools_stats.py' 2023-12-14T05:28:40,180 adding 'sequana/multiqc/config.py' 2023-12-14T05:28:40,182 adding 'sequana/multiqc/coverage.py' 2023-12-14T05:28:40,183 adding 'sequana/multiqc/isoseq.py' 2023-12-14T05:28:40,185 adding 'sequana/multiqc/isoseq_qc.py' 2023-12-14T05:28:40,187 adding 'sequana/multiqc/kraken.py' 2023-12-14T05:28:40,188 adding 'sequana/multiqc/laa.py' 2023-12-14T05:28:40,189 adding 'sequana/multiqc/multiqc_config.yaml' 2023-12-14T05:28:40,191 adding 'sequana/multiqc/pacbio_amplicon.py' 2023-12-14T05:28:40,192 adding 'sequana/multiqc/pacbio_qc.py' 2023-12-14T05:28:40,194 adding 'sequana/multiqc/plots.py' 2023-12-14T05:28:40,195 adding 'sequana/multiqc/quality_control.py' 2023-12-14T05:28:40,197 adding 'sequana/plots/__init__.py' 2023-12-14T05:28:40,198 adding 'sequana/plots/canvasjs_base.py' 2023-12-14T05:28:40,200 adding 'sequana/plots/canvasjs_linegraph.py' 2023-12-14T05:28:40,201 adding 'sequana/resources/__init__.py' 2023-12-14T05:28:40,203 adding 'sequana/resources/canvas/__init__.py' 2023-12-14T05:28:40,204 adding 'sequana/resources/canvas/bar.py' 2023-12-14T05:28:40,205 adding 'sequana/resources/css/__init__.py' 2023-12-14T05:28:40,215 adding 'sequana/resources/css/bootstrap.min.css' 2023-12-14T05:28:40,217 adding 'sequana/resources/css/buttons.dataTables.min.css' 2023-12-14T05:28:40,218 adding 'sequana/resources/css/jquery.dataTables.min.css' 2023-12-14T05:28:40,220 adding 'sequana/resources/css/jquery.dropdown.min.css' 2023-12-14T05:28:40,221 adding 'sequana/resources/css/report.css' 2023-12-14T05:28:40,234 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2023-12-14T05:28:40,247 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2023-12-14T05:28:40,249 adding 'sequana/resources/data/README.rst' 2023-12-14T05:28:40,250 adding 'sequana/resources/data/__init__.py' 2023-12-14T05:28:40,336 adding 'sequana/resources/data/kegg.csv' 2023-12-14T05:28:40,353 adding 'sequana/resources/data/measles.fa' 2023-12-14T05:28:40,356 adding 'sequana/resources/data/panther.csv' 2023-12-14T05:28:40,359 adding 'sequana/resources/data/phiX174.fa' 2023-12-14T05:28:40,419 adding 'sequana/resources/data/virus.bed' 2023-12-14T05:28:40,467 adding 'sequana/resources/doc/JB409847.bed' 2023-12-14T05:28:40,479 adding 'sequana/resources/doc/JB409847.fasta' 2023-12-14T05:28:40,481 adding 'sequana/resources/doc/__init__.py' 2023-12-14T05:28:40,490 adding 'sequana/resources/doc/kraken.out' 2023-12-14T05:28:40,492 adding 'sequana/resources/doc/kraken.out.summary' 2023-12-14T05:28:40,516 adding 'sequana/resources/doc/measles.fa.sorted.bam' 2023-12-14T05:28:40,519 adding 'sequana/resources/doc/measles.fa.sorted.bam.bai' 2023-12-14T05:28:40,523 adding 'sequana/resources/doc/test.bam' 2023-12-14T05:28:40,524 adding 'sequana/resources/doc/test.bam.bai' 2023-12-14T05:28:40,541 adding 'sequana/resources/doc/test.fastq' 2023-12-14T05:28:40,543 adding 'sequana/resources/doc/test_busco_full_table.tsv' 2023-12-14T05:28:40,583 adding 'sequana/resources/doc/test_pacbio_subreads.bam' 2023-12-14T05:28:40,586 adding 'sequana/resources/doc/test_pacbio_subreads.bam.bai' 2023-12-14T05:28:40,637 adding 'sequana/resources/doc/test_pca.csv' 2023-12-14T05:28:40,642 adding 'sequana/resources/doc/rnadiff/A_vs_B_degs_DESeq2.csv' 2023-12-14T05:28:40,648 adding 'sequana/resources/doc/rnadiff/rnadiff.csv' 2023-12-14T05:28:40,649 adding 'sequana/resources/doc/rnadiff/code/design.csv' 2023-12-14T05:28:40,662 adding 'sequana/resources/doc/rnadiff/code/overall_dds.csv' 2023-12-14T05:28:40,666 adding 'sequana/resources/doc/rnadiff/counts/counts_normed.csv' 2023-12-14T05:28:40,668 adding 'sequana/resources/doc/rnadiff/counts/counts_raw.csv' 2023-12-14T05:28:40,672 adding 'sequana/resources/doc/rnadiff/counts/counts_vst_norm.csv' 2023-12-14T05:28:40,674 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2023-12-14T05:28:40,703 adding 'sequana/resources/doc/rnadiff_compare/rnadiff_bowtie.csv' 2023-12-14T05:28:40,733 adding 'sequana/resources/doc/rnadiff_compare/rnadiff_salmon.csv' 2023-12-14T05:28:40,735 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2023-12-14T05:28:40,736 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2023-12-14T05:28:40,737 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2023-12-14T05:28:40,738 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2023-12-14T05:28:40,740 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2023-12-14T05:28:40,741 adding 'sequana/resources/examples/README.rst' 2023-12-14T05:28:40,742 adding 'sequana/resources/examples/__init__.py' 2023-12-14T05:28:40,745 adding 'sequana/resources/examples/test.fastq.gz' 2023-12-14T05:28:40,746 adding 'sequana/resources/examples/test_kraken.out' 2023-12-14T05:28:40,751 adding 'sequana/resources/images/Institut_Pasteur.png' 2023-12-14T05:28:40,753 adding 'sequana/resources/images/__init__.py' 2023-12-14T05:28:40,762 adding 'sequana/resources/images/logo_256x256.png' 2023-12-14T05:28:40,763 adding 'sequana/resources/images/no_data.jpg' 2023-12-14T05:28:40,765 adding 'sequana/resources/images/no_data.png' 2023-12-14T05:28:40,767 adding 'sequana/resources/js/__init__.py' 2023-12-14T05:28:40,771 adding 'sequana/resources/js/bootstrap.min.js' 2023-12-14T05:28:40,774 adding 'sequana/resources/js/buttons.html5.min.js' 2023-12-14T05:28:40,776 adding 'sequana/resources/js/buttons.print.min.js' 2023-12-14T05:28:40,797 adding 'sequana/resources/js/canvasjs.min.js' 2023-12-14T05:28:40,801 adding 'sequana/resources/js/dataTables.buttons.min.js' 2023-12-14T05:28:40,841 adding 'sequana/resources/js/jquery-2.1.1.js' 2023-12-14T05:28:40,855 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2023-12-14T05:28:40,867 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2023-12-14T05:28:40,879 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2023-12-14T05:28:40,891 adding 'sequana/resources/js/jquery.dataTables.min.js' 2023-12-14T05:28:40,893 adding 'sequana/resources/js/jquery.dropdown.min.js' 2023-12-14T05:28:40,894 adding 'sequana/resources/js/jquery.tocPlugin.js' 2023-12-14T05:28:40,896 adding 'sequana/resources/js/papaparse.min.js' 2023-12-14T05:28:40,897 adding 'sequana/resources/snpeff/__init__.py' 2023-12-14T05:28:40,899 adding 'sequana/resources/snpeff/snpEff.config' 2023-12-14T05:28:40,900 adding 'sequana/resources/templates/__init__.py' 2023-12-14T05:28:40,901 adding 'sequana/resources/templates/base.html' 2023-12-14T05:28:40,903 adding 'sequana/resources/templates/joint_calling.html' 2023-12-14T05:28:40,904 adding 'sequana/resources/templates/rnadiff_light_template.R' 2023-12-14T05:28:40,905 adding 'sequana/resources/templates/standard.html' 2023-12-14T05:28:40,907 adding 'sequana/resources/templates/vcf_diff.html' 2023-12-14T05:28:40,908 adding 'sequana/resources/testing/README.rst' 2023-12-14T05:28:40,909 adding 'sequana/resources/testing/__init__.py' 2023-12-14T05:28:40,911 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2023-12-14T05:28:40,919 adding 'sequana/resources/testing/test.fasta' 2023-12-14T05:28:40,931 adding 'sequana/resources/testing/test_blast_ebi.xml' 2023-12-14T05:28:40,935 adding 'sequana/resources/testing/test_blast_local.xml' 2023-12-14T05:28:40,967 adding 'sequana/resources/testing/test_coverage.csv' 2023-12-14T05:28:40,971 adding 'sequana/resources/testing/test_dag.ann.dot' 2023-12-14T05:28:40,972 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2023-12-14T05:28:40,973 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2023-12-14T05:28:40,974 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2023-12-14T05:28:40,975 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2023-12-14T05:28:40,976 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2023-12-14T05:28:40,977 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2023-12-14T05:28:40,979 adding 'sequana/resources/testing/test_index_mapper.csv' 2023-12-14T05:28:40,980 adding 'sequana/resources/testing/test_kraken.out.summary' 2023-12-14T05:28:40,981 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2023-12-14T05:28:41,203 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2023-12-14T05:28:41,208 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2023-12-14T05:28:41,209 adding 'sequana/scripts/__init__.py' 2023-12-14T05:28:41,210 adding 'sequana/scripts/common.py' 2023-12-14T05:28:41,213 adding 'sequana/scripts/coverage.py' 2023-12-14T05:28:41,215 adding 'sequana/scripts/substractor.py' 2023-12-14T05:28:41,217 adding 'sequana/scripts/taxonomy.py' 2023-12-14T05:28:41,218 adding 'sequana/scripts/utils.py' 2023-12-14T05:28:41,220 adding 'sequana/scripts/main/__init__.py' 2023-12-14T05:28:41,221 adding 'sequana/scripts/main/biomart.py' 2023-12-14T05:28:41,223 adding 'sequana/scripts/main/enrichment_kegg.py' 2023-12-14T05:28:41,224 adding 'sequana/scripts/main/enrichment_panther.py' 2023-12-14T05:28:41,226 adding 'sequana/scripts/main/enrichment_uniprot.py' 2023-12-14T05:28:41,227 adding 'sequana/scripts/main/fasta.py' 2023-12-14T05:28:41,229 adding 'sequana/scripts/main/fastq.py' 2023-12-14T05:28:41,230 adding 'sequana/scripts/main/feature_count.py' 2023-12-14T05:28:41,231 adding 'sequana/scripts/main/g4hunter.py' 2023-12-14T05:28:41,232 adding 'sequana/scripts/main/gff_to_gtf.py' 2023-12-14T05:28:41,234 adding 'sequana/scripts/main/gff_to_light_gff.py' 2023-12-14T05:28:41,235 adding 'sequana/scripts/main/gtf_fixer.py' 2023-12-14T05:28:41,237 adding 'sequana/scripts/main/lane_merging.py' 2023-12-14T05:28:41,238 adding 'sequana/scripts/main/main.py' 2023-12-14T05:28:41,239 adding 'sequana/scripts/main/mapping.py' 2023-12-14T05:28:41,241 adding 'sequana/scripts/main/ribodesigner.py' 2023-12-14T05:28:41,243 adding 'sequana/scripts/main/rnadiff.py' 2023-12-14T05:28:41,244 adding 'sequana/scripts/main/rnaseq_compare.py' 2023-12-14T05:28:41,245 adding 'sequana/scripts/main/salmon.py' 2023-12-14T05:28:41,247 adding 'sequana/scripts/main/samplesheet.py' 2023-12-14T05:28:41,248 adding 'sequana/scripts/main/summary.py' 2023-12-14T05:28:41,249 adding 'sequana/scripts/main/taxonomy.py' 2023-12-14T05:28:41,251 adding 'sequana/scripts/main/variants_comparison.py' 2023-12-14T05:28:41,252 adding 'sequana/utils/__init__.py' 2023-12-14T05:28:41,253 adding 'sequana/utils/config.py' 2023-12-14T05:28:41,256 adding 'sequana/utils/datatables_js.py' 2023-12-14T05:28:41,257 adding 'sequana/utils/df2html.py' 2023-12-14T05:28:41,258 adding 'sequana/utils/pandas.py' 2023-12-14T05:28:41,260 adding 'sequana/utils/singleton.py' 2023-12-14T05:28:41,261 adding 'sequana/utils/tree.py' 2023-12-14T05:28:41,263 adding 'sequana/viz/__init__.py' 2023-12-14T05:28:41,264 adding 'sequana/viz/anova.py' 2023-12-14T05:28:41,265 adding 'sequana/viz/boxplot.py' 2023-12-14T05:28:41,266 adding 'sequana/viz/clusterisation.py' 2023-12-14T05:28:41,268 adding 'sequana/viz/core.py' 2023-12-14T05:28:41,270 adding 'sequana/viz/corrplot.py' 2023-12-14T05:28:41,272 adding 'sequana/viz/dendogram.py' 2023-12-14T05:28:41,275 adding 'sequana/viz/heatmap.py' 2023-12-14T05:28:41,276 adding 'sequana/viz/hinton.py' 2023-12-14T05:28:41,278 adding 'sequana/viz/hist2d.py' 2023-12-14T05:28:41,279 adding 'sequana/viz/imshow.py' 2023-12-14T05:28:41,280 adding 'sequana/viz/isomap.py' 2023-12-14T05:28:41,282 adding 'sequana/viz/linkage.py' 2023-12-14T05:28:41,283 adding 'sequana/viz/mds.py' 2023-12-14T05:28:41,285 adding 'sequana/viz/pca.py' 2023-12-14T05:28:41,286 adding 'sequana/viz/plotly.py' 2023-12-14T05:28:41,287 adding 'sequana/viz/scatter.py' 2023-12-14T05:28:41,289 adding 'sequana/viz/venn.py' 2023-12-14T05:28:41,290 adding 'sequana/viz/volcano.py' 2023-12-14T05:28:41,293 adding 'sequana-0.16.4.dist-info/LICENSE' 2023-12-14T05:28:41,295 adding 'sequana-0.16.4.dist-info/METADATA' 2023-12-14T05:28:41,296 adding 'sequana-0.16.4.dist-info/WHEEL' 2023-12-14T05:28:41,297 adding 'sequana-0.16.4.dist-info/entry_points.txt' 2023-12-14T05:28:41,298 adding 'sequana-0.16.4.dist-info/top_level.txt' 2023-12-14T05:28:41,302 adding 'sequana-0.16.4.dist-info/RECORD' 2023-12-14T05:28:41,342 removing build/bdist.linux-armv7l/wheel 2023-12-14T05:28:41,521 Building wheel for sequana (setup.py): finished with status 'done' 2023-12-14T05:28:41,551 Created wheel for sequana: filename=sequana-0.16.4-py3-none-any.whl size=2730245 sha256=7c44c4fb986699877bc226d507e674feb174353bcf3fd6bd33c2c08af988c572 2023-12-14T05:28:41,552 Stored in directory: /tmp/pip-ephem-wheel-cache-gluc4u0n/wheels/e7/56/7b/24323ceb705611cd993eaf32501c10fcdfd919e991ecaf8bae 2023-12-14T05:28:41,576 Successfully built sequana 2023-12-14T05:28:41,658 Removed build tracker: '/tmp/pip-build-tracker-7sf2_ze6'