2023-12-14T21:36:39,994 Created temporary directory: /tmp/pip-build-tracker-omyy2ezu
2023-12-14T21:36:39,996 Initialized build tracking at /tmp/pip-build-tracker-omyy2ezu
2023-12-14T21:36:39,996 Created build tracker: /tmp/pip-build-tracker-omyy2ezu
2023-12-14T21:36:39,997 Entered build tracker: /tmp/pip-build-tracker-omyy2ezu
2023-12-14T21:36:39,997 Created temporary directory: /tmp/pip-wheel-bv73nupo
2023-12-14T21:36:40,001 Created temporary directory: /tmp/pip-ephem-wheel-cache-0xyu404t
2023-12-14T21:36:40,023 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-14T21:36:40,026 2 location(s) to search for versions of hydra-rbp:
2023-12-14T21:36:40,026 * https://pypi.org/simple/hydra-rbp/
2023-12-14T21:36:40,026 * https://www.piwheels.org/simple/hydra-rbp/
2023-12-14T21:36:40,027 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-12-14T21:36:40,028 Getting page https://pypi.org/simple/hydra-rbp/
2023-12-14T21:36:40,029 Found index url https://pypi.org/simple/
2023-12-14T21:36:40,247 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-12-14T21:36:40,249   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-12-14T21:36:40,250   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2023-12-14T21:36:40,250   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-14T21:36:40,251   Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29
2023-12-14T21:36:40,252 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-12-14T21:36:40,253 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-12-14T21:36:40,254 Found index url https://www.piwheels.org/simple/
2023-12-14T21:36:40,419 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-12-14T21:36:40,421   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-14T21:36:40,422   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-14T21:36:40,423 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-12-14T21:36:40,423 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-12-14T21:36:40,443 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-12-14T21:36:40,463 Collecting hydra-rbp==0.1.21.29
2023-12-14T21:36:40,465   Created temporary directory: /tmp/pip-unpack-_s2fkg2g
2023-12-14T21:36:40,709   Downloading hydra_rbp-0.1.21.29.tar.gz (52.4 MB)
2023-12-14T21:36:59,033   Added hydra-rbp==0.1.21.29 from https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz to build tracker '/tmp/pip-build-tracker-omyy2ezu'
2023-12-14T21:36:59,035   Running setup.py (path:/tmp/pip-wheel-bv73nupo/hydra-rbp_f31f1aa488f046f89feacac525f38cfc/setup.py) egg_info for package hydra-rbp
2023-12-14T21:36:59,036   Created temporary directory: /tmp/pip-pip-egg-info-hp36jptj
2023-12-14T21:36:59,037   Preparing metadata (setup.py): started
2023-12-14T21:36:59,039   Running command python setup.py egg_info
2023-12-14T21:36:59,756   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-14T21:36:59,756   !!

2023-12-14T21:36:59,757           ********************************************************************************
2023-12-14T21:36:59,757           Requirements should be satisfied by a PEP 517 installer.
2023-12-14T21:36:59,758           If you are using pip, you can try `pip install --use-pep517`.
2023-12-14T21:36:59,758           ********************************************************************************

2023-12-14T21:36:59,759   !!
2023-12-14T21:36:59,760     dist.fetch_build_eggs(dist.setup_requires)
2023-12-14T21:37:02,673   running egg_info
2023-12-14T21:37:02,674   creating /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info
2023-12-14T21:37:02,701   writing /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/PKG-INFO
2023-12-14T21:37:02,705   writing dependency_links to /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/dependency_links.txt
2023-12-14T21:37:02,707   writing entry points to /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/entry_points.txt
2023-12-14T21:37:02,708   writing requirements to /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/requires.txt
2023-12-14T21:37:02,709   writing top-level names to /tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/top_level.txt
2023-12-14T21:37:02,711   writing manifest file '/tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/SOURCES.txt'
2023-12-14T21:37:02,825   reading manifest file '/tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/SOURCES.txt'
2023-12-14T21:37:02,827   reading manifest template 'MANIFEST.in'
2023-12-14T21:37:02,830   adding license file 'LICENSE'
2023-12-14T21:37:02,834   writing manifest file '/tmp/pip-pip-egg-info-hp36jptj/hydra_rbp.egg-info/SOURCES.txt'
2023-12-14T21:37:02,945   Preparing metadata (setup.py): finished with status 'done'
2023-12-14T21:37:02,950   Source in /tmp/pip-wheel-bv73nupo/hydra-rbp_f31f1aa488f046f89feacac525f38cfc has version 0.1.21.29, which satisfies requirement hydra-rbp==0.1.21.29 from https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz
2023-12-14T21:37:02,951   Removed hydra-rbp==0.1.21.29 from https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz from build tracker '/tmp/pip-build-tracker-omyy2ezu'
2023-12-14T21:37:02,957 Created temporary directory: /tmp/pip-unpack-0wd8q1vv
2023-12-14T21:37:02,958 Created temporary directory: /tmp/pip-unpack-b7luvld6
2023-12-14T21:37:02,972 Building wheels for collected packages: hydra-rbp
2023-12-14T21:37:02,976   Created temporary directory: /tmp/pip-wheel-6g2chnbb
2023-12-14T21:37:02,976   Building wheel for hydra-rbp (setup.py): started
2023-12-14T21:37:02,978   Destination directory: /tmp/pip-wheel-6g2chnbb
2023-12-14T21:37:02,978   Running command python setup.py bdist_wheel
2023-12-14T21:37:03,666   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-14T21:37:03,666   !!

2023-12-14T21:37:03,668           ********************************************************************************
2023-12-14T21:37:03,668           Requirements should be satisfied by a PEP 517 installer.
2023-12-14T21:37:03,669           If you are using pip, you can try `pip install --use-pep517`.
2023-12-14T21:37:03,669           ********************************************************************************

2023-12-14T21:37:03,670   !!
2023-12-14T21:37:03,671     dist.fetch_build_eggs(dist.setup_requires)
2023-12-14T21:37:04,187   running bdist_wheel
2023-12-14T21:37:04,319   running build
2023-12-14T21:37:04,320   running build_py
2023-12-14T21:37:04,350   creating build
2023-12-14T21:37:04,350   creating build/lib
2023-12-14T21:37:04,351   creating build/lib/HydRa
2023-12-14T21:37:04,352   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-12-14T21:37:04,355   copying HydRa/__init__.py -> build/lib/HydRa
2023-12-14T21:37:04,356   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-12-14T21:37:04,359   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-12-14T21:37:04,361   creating build/lib/HydRa/preprocessing
2023-12-14T21:37:04,361   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-12-14T21:37:04,363   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-12-14T21:37:04,365   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-12-14T21:37:04,367   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-12-14T21:37:04,369   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-12-14T21:37:04,371   creating build/lib/HydRa/predictions
2023-12-14T21:37:04,372   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,374   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,376   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,377   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,380   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,383   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,386   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,390   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-14T21:37:04,394   creating build/lib/HydRa/training
2023-12-14T21:37:04,395   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-12-14T21:37:04,397   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-12-14T21:37:04,400   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-12-14T21:37:04,402   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-12-14T21:37:04,405   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-12-14T21:37:04,407   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-12-14T21:37:04,411   creating build/lib/HydRa/evaluation
2023-12-14T21:37:04,412   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-12-14T21:37:04,413   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-12-14T21:37:04,415   creating build/lib/HydRa/models
2023-12-14T21:37:04,416   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-12-14T21:37:04,418   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-12-14T21:37:04,421   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-12-14T21:37:04,425   creating build/lib/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:04,426   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:04,428   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:04,431   creating build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,431   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,434   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,435   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,437   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,438   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,441   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,442   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:04,443   running egg_info
2023-12-14T21:37:04,471   writing hydra_rbp.egg-info/PKG-INFO
2023-12-14T21:37:04,474   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-12-14T21:37:04,476   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-12-14T21:37:04,477   writing requirements to hydra_rbp.egg-info/requires.txt
2023-12-14T21:37:04,478   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-12-14T21:37:04,522   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-14T21:37:04,525   reading manifest template 'MANIFEST.in'
2023-12-14T21:37:04,528   adding license file 'LICENSE'
2023-12-14T21:37:04,533   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-14T21:37:04,535   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-12-14T21:37:04,536   !!

2023-12-14T21:37:04,537           ********************************************************************************
2023-12-14T21:37:04,537           ############################
2023-12-14T21:37:04,538           # Package would be ignored #
2023-12-14T21:37:04,538           ############################
2023-12-14T21:37:04,539           Python recognizes 'HydRa.data' as an importable package[^1],
2023-12-14T21:37:04,539           but it is absent from setuptools' `packages` configuration.

2023-12-14T21:37:04,541           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T21:37:04,541           package, please make sure that 'HydRa.data' is explicitly added
2023-12-14T21:37:04,542           to the `packages` configuration field.

2023-12-14T21:37:04,543           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T21:37:04,544           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T21:37:04,544           instead of `find_packages(...)`/`find:`).

2023-12-14T21:37:04,545           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T21:37:04,546           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T21:37:04,547           If you don't want 'HydRa.data' to be distributed and are
2023-12-14T21:37:04,548           already explicitly excluding 'HydRa.data' via
2023-12-14T21:37:04,549           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T21:37:04,549           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T21:37:04,550           combination with a more fine grained `package-data` configuration.

2023-12-14T21:37:04,551           You can read more about "package data files" on setuptools documentation page:

2023-12-14T21:37:04,552           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T21:37:04,567           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T21:37:04,570                 even if it does not contain any `.py` files.
2023-12-14T21:37:04,571                 On the other hand, currently there is no concept of package data
2023-12-14T21:37:04,571                 directory, all directories are treated like packages.
2023-12-14T21:37:04,572           ********************************************************************************

2023-12-14T21:37:04,573   !!
2023-12-14T21:37:04,573     check.warn(importable)
2023-12-14T21:37:04,574   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-12-14T21:37:04,574   !!

2023-12-14T21:37:04,575           ********************************************************************************
2023-12-14T21:37:04,576           ############################
2023-12-14T21:37:04,576           # Package would be ignored #
2023-12-14T21:37:04,577           ############################
2023-12-14T21:37:04,577           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-12-14T21:37:04,577           but it is absent from setuptools' `packages` configuration.

2023-12-14T21:37:04,578           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-14T21:37:04,579           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-12-14T21:37:04,580           to the `packages` configuration field.

2023-12-14T21:37:04,589           Alternatively, you can also rely on setuptools' discovery methods
2023-12-14T21:37:04,592           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-14T21:37:04,593           instead of `find_packages(...)`/`find:`).

2023-12-14T21:37:04,594           You can read more about "package discovery" on setuptools documentation page:

2023-12-14T21:37:04,595           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-14T21:37:04,596           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-12-14T21:37:04,597           already explicitly excluding 'HydRa.pre_trained' via
2023-12-14T21:37:04,597           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-14T21:37:04,598           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-14T21:37:04,599           combination with a more fine grained `package-data` configuration.

2023-12-14T21:37:04,600           You can read more about "package data files" on setuptools documentation page:

2023-12-14T21:37:04,601           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-14T21:37:04,603           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-14T21:37:04,604                 even if it does not contain any `.py` files.
2023-12-14T21:37:04,605                 On the other hand, currently there is no concept of package data
2023-12-14T21:37:04,605                 directory, all directories are treated like packages.
2023-12-14T21:37:04,606           ********************************************************************************

2023-12-14T21:37:04,607   !!
2023-12-14T21:37:04,608     check.warn(importable)
2023-12-14T21:37:04,609   creating build/lib/HydRa/data
2023-12-14T21:37:04,609   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-14T21:37:04,610   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-14T21:37:04,610   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-12-14T21:37:04,712   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-14T21:37:04,740   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-14T21:37:04,789   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-14T21:37:04,962   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-14T21:37:05,039   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-12-14T21:37:05,199   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-14T21:37:05,233   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-14T21:37:05,266   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,271   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,276   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-14T21:37:05,278   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-12-14T21:37:05,281   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-14T21:37:05,283   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-12-14T21:37:05,368   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-14T21:37:05,370   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,515   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,517   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,520   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-14T21:37:05,522   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-12-14T21:37:06,093   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-14T21:37:06,095   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-14T21:37:06,097   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-12-14T21:37:06,162   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-12-14T21:37:06,190   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-12-14T21:37:06,223   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-12-14T21:37:06,345   creating build/lib/HydRa/pre_trained
2023-12-14T21:37:06,346   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,375   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,401   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,404   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,466   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,468   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,535   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,539   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,542   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,562   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-14T21:37:06,578   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-14T21:37:09,823   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-14T21:37:10,765   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-14T21:37:10,765   !!

2023-12-14T21:37:10,766           ********************************************************************************
2023-12-14T21:37:10,767           Please avoid running ``setup.py`` directly.
2023-12-14T21:37:10,767           Instead, use pypa/build, pypa/installer or other
2023-12-14T21:37:10,768           standards-based tools.

2023-12-14T21:37:10,769           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-14T21:37:10,769           ********************************************************************************

2023-12-14T21:37:10,770   !!
2023-12-14T21:37:10,771     self.initialize_options()
2023-12-14T21:37:10,793   installing to build/bdist.linux-armv7l/wheel
2023-12-14T21:37:10,794   running install
2023-12-14T21:37:10,818   running install_lib
2023-12-14T21:37:10,845   creating build/bdist.linux-armv7l
2023-12-14T21:37:10,846   creating build/bdist.linux-armv7l/wheel
2023-12-14T21:37:10,847   creating build/bdist.linux-armv7l/wheel/HydRa
2023-12-14T21:37:10,849   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-14T21:37:10,852   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:10,853   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:10,858   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:10,967   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:10,968   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:10,970   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,002   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,126   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,129   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,130   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,133   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,206   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,208   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,230   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,399   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,963   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:11,996   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,001   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,032   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,070   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,071   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,090   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,122   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,149   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,317   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,320   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,398   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,400   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,556   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-14T21:37:12,628   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-14T21:37:12,630   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-14T21:37:12,633   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,635   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:12,636   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:12,637   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-14T21:37:12,640   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,642   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,643   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,645   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,647   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,649   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,650   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,653   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,654   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-14T21:37:12,656   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,658   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,660   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,662   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-14T21:37:12,665   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,666   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,668   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,670   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,672   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,675   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,678   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,681   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,684   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-14T21:37:12,688   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,689   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,692   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,695   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,697   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,700   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,702   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-14T21:37:12,706   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:12,707   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:12,732   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:12,735   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:12,751   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:14,380   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:14,449   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,457   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,461   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,464   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,488   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,506   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,510   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-14T21:37:17,569   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-14T21:37:17,570   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-14T21:37:17,571   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-14T21:37:17,574   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-14T21:37:17,574   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-14T21:37:17,576   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-14T21:37:17,579   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-14T21:37:17,582   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-14T21:37:17,583   running install_egg_info
2023-12-14T21:37:17,612   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.29-py3.11.egg-info
2023-12-14T21:37:17,625   running install_scripts
2023-12-14T21:37:17,642   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.29.dist-info/WHEEL
2023-12-14T21:37:17,644   creating '/tmp/pip-wheel-6g2chnbb/hydra_rbp-0.1.21.29-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-14T21:37:17,649   adding 'HydRa/HydRa2_0_predict.py'
2023-12-14T21:37:17,653   adding 'HydRa/HydRa_predict.py'
2023-12-14T21:37:17,654   adding 'HydRa/__init__.py'
2023-12-14T21:37:17,656   adding 'HydRa/test_data_load.py'
2023-12-14T21:37:18,041   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-12-14T21:37:18,405   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-12-14T21:37:20,552   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-12-14T21:37:21,104   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-12-14T21:37:21,842   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-12-14T21:37:25,171   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-14T21:37:26,345   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-14T21:37:29,689   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-12-14T21:37:30,318   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-14T21:37:30,899   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-14T21:37:30,950   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-12-14T21:37:30,993   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-12-14T21:37:30,996   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-14T21:37:30,997   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-12-14T21:37:30,999   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-12-14T21:37:32,104   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-12-14T21:37:32,135   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-14T21:37:33,809   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-12-14T21:37:33,872   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-12-14T21:37:33,874   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-14T21:37:33,876   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-14T21:37:37,120   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-12-14T21:37:37,366   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-14T21:37:37,367   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-14T21:37:38,825   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-12-14T21:37:39,359   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-12-14T21:37:39,933   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-12-14T21:37:42,276   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-12-14T21:37:42,331   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-12-14T21:37:42,332   adding 'HydRa/evaluation/__init__.py'
2023-12-14T21:37:42,337   adding 'HydRa/models/DNN_seq.py'
2023-12-14T21:37:42,339   adding 'HydRa/models/Sequence_class.py'
2023-12-14T21:37:42,341   adding 'HydRa/models/__init__.py'
2023-12-14T21:37:42,567   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-14T21:37:42,798   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-14T21:37:42,810   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-12-14T21:37:43,409   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-12-14T21:37:43,435   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-12-14T21:37:44,032   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-12-14T21:37:44,063   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-14T21:37:44,070   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-14T21:37:44,166   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-14T21:37:44,270   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-14T21:37:49,042   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-12-14T21:37:53,393   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-12-14T21:37:53,806   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-12-14T21:37:53,811   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-12-14T21:37:53,812   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-12-14T21:37:53,817   adding 'HydRa/predictions/Occlusion_map.py'
2023-12-14T21:37:53,823   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-12-14T21:37:53,832   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-12-14T21:37:53,842   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-12-14T21:37:53,843   adding 'HydRa/predictions/__init__.py'
2023-12-14T21:37:53,846   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-12-14T21:37:53,847   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-12-14T21:37:53,848   adding 'HydRa/preprocessing/__init__.py'
2023-12-14T21:37:53,850   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-12-14T21:37:53,851   adding 'HydRa/preprocessing/predict_SS.py'
2023-12-14T21:37:53,853   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-12-14T21:37:53,854   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-12-14T21:37:53,856   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-12-14T21:37:53,857   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-12-14T21:37:53,859   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-12-14T21:37:53,860   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-12-14T21:37:53,861   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-12-14T21:37:53,863   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-12-14T21:37:53,864   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-12-14T21:37:53,866   adding 'HydRa/training/__init__.py'
2023-12-14T21:37:53,870   adding 'HydRa/training/train_HydRa.py'
2023-12-14T21:37:53,875   adding 'HydRa/training/train_HydRa2_0.py'
2023-12-14T21:37:53,880   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-12-14T21:37:53,885   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-12-14T21:37:53,890   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-12-14T21:37:53,892   adding 'hydra_rbp-0.1.21.29.dist-info/LICENSE'
2023-12-14T21:37:53,894   adding 'hydra_rbp-0.1.21.29.dist-info/METADATA'
2023-12-14T21:37:53,895   adding 'hydra_rbp-0.1.21.29.dist-info/WHEEL'
2023-12-14T21:37:53,896   adding 'hydra_rbp-0.1.21.29.dist-info/entry_points.txt'
2023-12-14T21:37:53,897   adding 'hydra_rbp-0.1.21.29.dist-info/top_level.txt'
2023-12-14T21:37:53,899   adding 'hydra_rbp-0.1.21.29.dist-info/RECORD'
2023-12-14T21:37:53,929   removing build/bdist.linux-armv7l/wheel
2023-12-14T21:37:54,177   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-12-14T21:37:55,287   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.29-py3-none-any.whl size=53775104 sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b
2023-12-14T21:37:55,288   Stored in directory: /tmp/pip-ephem-wheel-cache-0xyu404t/wheels/b2/e0/54/44a5c4973e2835124481d53e715cdf00ba1d090b664f6fb7f2
2023-12-14T21:37:55,319 Successfully built hydra-rbp
2023-12-14T21:37:56,575 Removed build tracker: '/tmp/pip-build-tracker-omyy2ezu'