2023-12-15T04:55:34,280 Created temporary directory: /tmp/pip-build-tracker-t5aei9cb
2023-12-15T04:55:34,281 Initialized build tracking at /tmp/pip-build-tracker-t5aei9cb
2023-12-15T04:55:34,282 Created build tracker: /tmp/pip-build-tracker-t5aei9cb
2023-12-15T04:55:34,282 Entered build tracker: /tmp/pip-build-tracker-t5aei9cb
2023-12-15T04:55:34,283 Created temporary directory: /tmp/pip-wheel-l618su26
2023-12-15T04:55:34,286 Created temporary directory: /tmp/pip-ephem-wheel-cache-g_hz3byp
2023-12-15T04:55:34,308 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T04:55:34,311 2 location(s) to search for versions of hydra-rbp:
2023-12-15T04:55:34,311 * https://pypi.org/simple/hydra-rbp/
2023-12-15T04:55:34,311 * https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:55:34,312 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-12-15T04:55:34,313 Getting page https://pypi.org/simple/hydra-rbp/
2023-12-15T04:55:34,314 Found index url https://pypi.org/simple/
2023-12-15T04:55:34,526 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-12-15T04:55:34,529   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-12-15T04:55:34,530   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2023-12-15T04:55:34,531   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,532   Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29
2023-12-15T04:55:34,532   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/2b/eb/56bd5fd43ae21430c6fb8b13146c9f39e742ed414207aaadf1c3657266f3/hydra_rbp-0.1.21.30-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,533   Found link https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.30
2023-12-15T04:55:34,534   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/e5/2d/54a09009e4b876ab35dce61dd20d809ec9823b128f6d918b68397d41f075/hydra_rbp-0.1.21.31-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,535   Found link https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.31
2023-12-15T04:55:34,536 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:55:34,536 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:55:34,538 Found index url https://www.piwheels.org/simple/
2023-12-15T04:55:34,694 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-12-15T04:55:34,696   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.29-py3-none-any.whl#sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,697   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,698   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:55:34,699 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:55:34,699 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-12-15T04:55:34,718 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-12-15T04:55:34,735 Collecting hydra-rbp==0.1.21.30
2023-12-15T04:55:34,737   Created temporary directory: /tmp/pip-unpack-04t85b5h
2023-12-15T04:55:34,964   Downloading hydra_rbp-0.1.21.30.tar.gz (52.4 MB)
2023-12-15T04:55:56,530   Added hydra-rbp==0.1.21.30 from https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz to build tracker '/tmp/pip-build-tracker-t5aei9cb'
2023-12-15T04:55:56,532   Running setup.py (path:/tmp/pip-wheel-l618su26/hydra-rbp_be4268c24da94692a0f170bddb3a5b60/setup.py) egg_info for package hydra-rbp
2023-12-15T04:55:56,533   Created temporary directory: /tmp/pip-pip-egg-info-ikenck18
2023-12-15T04:55:56,533   Preparing metadata (setup.py): started
2023-12-15T04:55:56,535   Running command python setup.py egg_info
2023-12-15T04:55:57,246   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T04:55:57,247   !!

2023-12-15T04:55:57,248           ********************************************************************************
2023-12-15T04:55:57,248           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T04:55:57,249           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T04:55:57,250           ********************************************************************************

2023-12-15T04:55:57,251   !!
2023-12-15T04:55:57,251     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T04:56:00,015   running egg_info
2023-12-15T04:56:00,017   creating /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info
2023-12-15T04:56:00,045   writing /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/PKG-INFO
2023-12-15T04:56:00,048   writing dependency_links to /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/dependency_links.txt
2023-12-15T04:56:00,050   writing entry points to /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/entry_points.txt
2023-12-15T04:56:00,052   writing requirements to /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/requires.txt
2023-12-15T04:56:00,053   writing top-level names to /tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/top_level.txt
2023-12-15T04:56:00,055   writing manifest file '/tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:00,169   reading manifest file '/tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:00,171   reading manifest template 'MANIFEST.in'
2023-12-15T04:56:00,175   adding license file 'LICENSE'
2023-12-15T04:56:00,179   writing manifest file '/tmp/pip-pip-egg-info-ikenck18/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:00,287   Preparing metadata (setup.py): finished with status 'done'
2023-12-15T04:56:00,291   Source in /tmp/pip-wheel-l618su26/hydra-rbp_be4268c24da94692a0f170bddb3a5b60 has version 0.1.21.30, which satisfies requirement hydra-rbp==0.1.21.30 from https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz
2023-12-15T04:56:00,292   Removed hydra-rbp==0.1.21.30 from https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz from build tracker '/tmp/pip-build-tracker-t5aei9cb'
2023-12-15T04:56:00,299 Created temporary directory: /tmp/pip-unpack-q87hzjto
2023-12-15T04:56:00,300 Created temporary directory: /tmp/pip-unpack-ggpn6p4t
2023-12-15T04:56:00,313 Building wheels for collected packages: hydra-rbp
2023-12-15T04:56:00,317   Created temporary directory: /tmp/pip-wheel-3enaar89
2023-12-15T04:56:00,318   Building wheel for hydra-rbp (setup.py): started
2023-12-15T04:56:00,319   Destination directory: /tmp/pip-wheel-3enaar89
2023-12-15T04:56:00,319   Running command python setup.py bdist_wheel
2023-12-15T04:56:00,997   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T04:56:00,997   !!

2023-12-15T04:56:00,998           ********************************************************************************
2023-12-15T04:56:00,999           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T04:56:00,999           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T04:56:01,000           ********************************************************************************

2023-12-15T04:56:01,001   !!
2023-12-15T04:56:01,001     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T04:56:01,486   running bdist_wheel
2023-12-15T04:56:01,591   running build
2023-12-15T04:56:01,591   running build_py
2023-12-15T04:56:01,621   creating build
2023-12-15T04:56:01,622   creating build/lib
2023-12-15T04:56:01,623   creating build/lib/HydRa
2023-12-15T04:56:01,624   copying HydRa/__init__.py -> build/lib/HydRa
2023-12-15T04:56:01,626   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-12-15T04:56:01,629   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-12-15T04:56:01,632   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-12-15T04:56:01,634   creating build/lib/HydRa/training
2023-12-15T04:56:01,635   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-12-15T04:56:01,639   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-12-15T04:56:01,642   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-12-15T04:56:01,644   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-12-15T04:56:01,647   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T04:56:01,650   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T04:56:01,654   creating build/lib/HydRa/predictions
2023-12-15T04:56:01,655   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,657   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,658   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,663   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,667   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,668   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,671   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,675   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-12-15T04:56:01,678   creating build/lib/HydRa/preprocessing
2023-12-15T04:56:01,679   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:01,681   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:01,683   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:01,685   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:01,687   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:01,690   creating build/lib/HydRa/models
2023-12-15T04:56:01,691   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-12-15T04:56:01,694   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-12-15T04:56:01,696   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-12-15T04:56:01,700   creating build/lib/HydRa/evaluation
2023-12-15T04:56:01,700   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-12-15T04:56:01,702   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-12-15T04:56:01,705   creating build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,705   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,707   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,709   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,711   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,713   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,715   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,717   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:01,719   creating build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:01,720   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:01,722   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:01,723   running egg_info
2023-12-15T04:56:01,775   writing hydra_rbp.egg-info/PKG-INFO
2023-12-15T04:56:01,778   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-12-15T04:56:01,780   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-12-15T04:56:01,782   writing requirements to hydra_rbp.egg-info/requires.txt
2023-12-15T04:56:01,783   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-12-15T04:56:01,834   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:01,838   reading manifest template 'MANIFEST.in'
2023-12-15T04:56:01,841   adding license file 'LICENSE'
2023-12-15T04:56:01,846   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:01,849   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-12-15T04:56:01,849   !!

2023-12-15T04:56:01,850           ********************************************************************************
2023-12-15T04:56:01,851           ############################
2023-12-15T04:56:01,851           # Package would be ignored #
2023-12-15T04:56:01,852           ############################
2023-12-15T04:56:01,853           Python recognizes 'HydRa.data' as an importable package[^1],
2023-12-15T04:56:01,853           but it is absent from setuptools' `packages` configuration.

2023-12-15T04:56:01,854           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T04:56:01,855           package, please make sure that 'HydRa.data' is explicitly added
2023-12-15T04:56:01,855           to the `packages` configuration field.

2023-12-15T04:56:01,857           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T04:56:01,857           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T04:56:01,858           instead of `find_packages(...)`/`find:`).

2023-12-15T04:56:01,859           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T04:56:01,860           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T04:56:01,861           If you don't want 'HydRa.data' to be distributed and are
2023-12-15T04:56:01,861           already explicitly excluding 'HydRa.data' via
2023-12-15T04:56:01,861           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T04:56:01,862           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T04:56:01,862           combination with a more fine grained `package-data` configuration.

2023-12-15T04:56:01,863           You can read more about "package data files" on setuptools documentation page:

2023-12-15T04:56:01,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T04:56:01,866           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T04:56:01,866                 even if it does not contain any `.py` files.
2023-12-15T04:56:01,866                 On the other hand, currently there is no concept of package data
2023-12-15T04:56:01,867                 directory, all directories are treated like packages.
2023-12-15T04:56:01,867           ********************************************************************************

2023-12-15T04:56:01,875   !!
2023-12-15T04:56:01,884     check.warn(importable)
2023-12-15T04:56:01,887   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-12-15T04:56:01,888   !!

2023-12-15T04:56:01,889           ********************************************************************************
2023-12-15T04:56:01,889           ############################
2023-12-15T04:56:01,890           # Package would be ignored #
2023-12-15T04:56:01,890           ############################
2023-12-15T04:56:01,891           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-12-15T04:56:01,892           but it is absent from setuptools' `packages` configuration.

2023-12-15T04:56:01,893           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T04:56:01,893           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-12-15T04:56:01,894           to the `packages` configuration field.

2023-12-15T04:56:01,895           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T04:56:01,897           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T04:56:01,903           instead of `find_packages(...)`/`find:`).

2023-12-15T04:56:01,913           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T04:56:01,914           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T04:56:01,915           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-12-15T04:56:01,916           already explicitly excluding 'HydRa.pre_trained' via
2023-12-15T04:56:01,917           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T04:56:01,917           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T04:56:01,918           combination with a more fine grained `package-data` configuration.

2023-12-15T04:56:01,919           You can read more about "package data files" on setuptools documentation page:

2023-12-15T04:56:01,920           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T04:56:01,922           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T04:56:01,922                 even if it does not contain any `.py` files.
2023-12-15T04:56:01,923                 On the other hand, currently there is no concept of package data
2023-12-15T04:56:01,924                 directory, all directories are treated like packages.
2023-12-15T04:56:01,925           ********************************************************************************

2023-12-15T04:56:01,925   !!
2023-12-15T04:56:01,926     check.warn(importable)
2023-12-15T04:56:01,926   creating build/lib/HydRa/data
2023-12-15T04:56:01,927   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:01,927   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:01,928   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-12-15T04:56:02,027   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,054   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,096   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,285   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,358   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-12-15T04:56:02,527   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,561   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,594   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,599   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,604   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:02,606   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:02,608   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:02,610   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-12-15T04:56:02,690   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:02,692   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,854   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,856   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,858   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:02,861   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-12-15T04:56:05,924   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:05,927   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:05,929   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-12-15T04:56:06,008   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-12-15T04:56:06,041   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-12-15T04:56:06,076   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-12-15T04:56:06,205   creating build/lib/HydRa/pre_trained
2023-12-15T04:56:06,207   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,233   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,259   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,261   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,325   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,328   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,387   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,391   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,395   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,413   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:06,433   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:09,986   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:12,944   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-15T04:56:12,944   !!

2023-12-15T04:56:12,945           ********************************************************************************
2023-12-15T04:56:12,946           Please avoid running ``setup.py`` directly.
2023-12-15T04:56:12,949           Instead, use pypa/build, pypa/installer or other
2023-12-15T04:56:12,950           standards-based tools.

2023-12-15T04:56:12,951           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-15T04:56:12,952           ********************************************************************************

2023-12-15T04:56:12,953   !!
2023-12-15T04:56:12,954     self.initialize_options()
2023-12-15T04:56:12,975   installing to build/bdist.linux-armv7l/wheel
2023-12-15T04:56:12,975   running install
2023-12-15T04:56:12,998   running install_lib
2023-12-15T04:56:13,025   creating build/bdist.linux-armv7l
2023-12-15T04:56:13,026   creating build/bdist.linux-armv7l/wheel
2023-12-15T04:56:13,028   creating build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:56:13,029   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,030   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,033   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,036   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,038   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,041   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,044   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:56:13,047   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,048   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,050   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,052   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,056   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,060   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,062   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,065   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,068   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:56:13,072   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,073   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,075   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,077   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,079   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,081   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,083   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,085   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,088   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:13,090   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,092   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,095   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,097   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,100   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:56:13,103   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:13,104   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:13,107   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:13,108   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:56:13,110   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:56:13,114   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:13,115   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,461   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,463   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,481   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,496   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,499   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,564   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,566   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,627   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:17,631   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:18,527   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:18,552   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:56:18,579   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:56:18,582   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:56:18,584   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:56:18,584   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:56:18,587   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:56:18,589   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:56:18,593   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,594   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,638   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,640   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,760   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,924   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,926   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,956   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,958   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,960   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:18,981   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,111   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,146   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,220   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,248   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,250   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,252   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,296   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,484   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,502   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:19,504   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,086   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,166   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,310   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,341   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,397   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,399   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,401   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,406   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:56:20,472   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:56:20,473   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:56:20,475   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:56:20,477   running install_egg_info
2023-12-15T04:56:20,505   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.30-py3.11.egg-info
2023-12-15T04:56:20,518   running install_scripts
2023-12-15T04:56:20,536   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.30.dist-info/WHEEL
2023-12-15T04:56:20,539   creating '/tmp/pip-wheel-3enaar89/hydra_rbp-0.1.21.30-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T04:56:20,544   adding 'HydRa/HydRa2_0_predict.py'
2023-12-15T04:56:20,548   adding 'HydRa/HydRa_predict.py'
2023-12-15T04:56:20,549   adding 'HydRa/__init__.py'
2023-12-15T04:56:20,551   adding 'HydRa/test_data_load.py'
2023-12-15T04:56:20,943   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-12-15T04:56:21,310   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-12-15T04:56:23,493   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-12-15T04:56:24,050   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-12-15T04:56:24,799   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-12-15T04:56:28,183   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T04:56:29,375   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T04:56:32,772   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-12-15T04:56:33,414   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T04:56:33,989   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T04:56:34,050   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-12-15T04:56:34,094   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-12-15T04:56:34,096   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T04:56:34,098   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-12-15T04:56:34,100   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-12-15T04:56:35,224   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-12-15T04:56:35,252   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T04:56:36,954   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-12-15T04:56:37,012   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-12-15T04:56:37,014   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:56:37,016   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:56:40,344   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-12-15T04:56:40,589   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:56:40,591   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:56:42,063   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-12-15T04:56:42,572   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-12-15T04:56:43,151   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-12-15T04:56:45,634   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-12-15T04:56:45,690   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-12-15T04:56:45,692   adding 'HydRa/evaluation/__init__.py'
2023-12-15T04:56:45,697   adding 'HydRa/models/DNN_seq.py'
2023-12-15T04:56:45,701   adding 'HydRa/models/Sequence_class.py'
2023-12-15T04:56:45,703   adding 'HydRa/models/__init__.py'
2023-12-15T04:56:45,936   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T04:56:46,839   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T04:56:47,086   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-12-15T04:56:47,740   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-12-15T04:56:47,765   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-12-15T04:56:48,378   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-12-15T04:56:48,409   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T04:56:48,416   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T04:56:48,514   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T04:56:48,619   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T04:56:55,228   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-12-15T04:56:58,528   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-12-15T04:56:59,063   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-12-15T04:56:59,231   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-12-15T04:56:59,234   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-12-15T04:56:59,370   adding 'HydRa/predictions/Occlusion_map.py'
2023-12-15T04:56:59,425   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-12-15T04:56:59,434   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-12-15T04:56:59,444   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-12-15T04:56:59,446   adding 'HydRa/predictions/__init__.py'
2023-12-15T04:56:59,450   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-12-15T04:56:59,452   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-12-15T04:56:59,453   adding 'HydRa/preprocessing/__init__.py'
2023-12-15T04:56:59,455   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-12-15T04:56:59,456   adding 'HydRa/preprocessing/predict_SS.py'
2023-12-15T04:56:59,458   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-12-15T04:56:59,460   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-12-15T04:56:59,461   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-12-15T04:56:59,463   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-12-15T04:56:59,464   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-12-15T04:56:59,466   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-12-15T04:56:59,467   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-12-15T04:56:59,470   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-12-15T04:56:59,471   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-12-15T04:56:59,473   adding 'HydRa/training/__init__.py'
2023-12-15T04:56:59,477   adding 'HydRa/training/train_HydRa.py'
2023-12-15T04:56:59,482   adding 'HydRa/training/train_HydRa2_0.py'
2023-12-15T04:56:59,487   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-12-15T04:56:59,492   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-12-15T04:56:59,497   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-12-15T04:56:59,500   adding 'hydra_rbp-0.1.21.30.dist-info/LICENSE'
2023-12-15T04:56:59,502   adding 'hydra_rbp-0.1.21.30.dist-info/METADATA'
2023-12-15T04:56:59,503   adding 'hydra_rbp-0.1.21.30.dist-info/WHEEL'
2023-12-15T04:56:59,504   adding 'hydra_rbp-0.1.21.30.dist-info/entry_points.txt'
2023-12-15T04:56:59,506   adding 'hydra_rbp-0.1.21.30.dist-info/top_level.txt'
2023-12-15T04:56:59,508   adding 'hydra_rbp-0.1.21.30.dist-info/RECORD'
2023-12-15T04:56:59,612   removing build/bdist.linux-armv7l/wheel
2023-12-15T04:56:59,882   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-12-15T04:57:01,183   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.30-py3-none-any.whl size=53775130 sha256=997fd56e129174ba095b515d6883360d8b23cca3c8c83ddeb33c988e0bcc39c8
2023-12-15T04:57:01,184   Stored in directory: /tmp/pip-ephem-wheel-cache-g_hz3byp/wheels/f8/f0/61/15a717b26a8767d68b84cb561343cfd21dd4f3bda4458d8ef3
2023-12-15T04:57:01,216 Successfully built hydra-rbp
2023-12-15T04:57:02,761 Removed build tracker: '/tmp/pip-build-tracker-t5aei9cb'