2023-12-15T04:56:26,730 Created temporary directory: /tmp/pip-build-tracker-1x1d6qji
2023-12-15T04:56:26,731 Initialized build tracking at /tmp/pip-build-tracker-1x1d6qji
2023-12-15T04:56:26,732 Created build tracker: /tmp/pip-build-tracker-1x1d6qji
2023-12-15T04:56:26,732 Entered build tracker: /tmp/pip-build-tracker-1x1d6qji
2023-12-15T04:56:26,733 Created temporary directory: /tmp/pip-wheel-lvwbt34g
2023-12-15T04:56:26,736 Created temporary directory: /tmp/pip-ephem-wheel-cache-xpbmejsf
2023-12-15T04:56:26,758 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T04:56:26,762 2 location(s) to search for versions of hydra-rbp:
2023-12-15T04:56:26,762 * https://pypi.org/simple/hydra-rbp/
2023-12-15T04:56:26,762 * https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:56:26,763 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-12-15T04:56:26,763 Getting page https://pypi.org/simple/hydra-rbp/
2023-12-15T04:56:26,765 Found index url https://pypi.org/simple/
2023-12-15T04:56:26,897 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-12-15T04:56:26,899   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-12-15T04:56:26,900   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2023-12-15T04:56:26,901   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:26,902   Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29
2023-12-15T04:56:26,902   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/2b/eb/56bd5fd43ae21430c6fb8b13146c9f39e742ed414207aaadf1c3657266f3/hydra_rbp-0.1.21.30-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:26,903   Found link https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.30
2023-12-15T04:56:26,904   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/e5/2d/54a09009e4b876ab35dce61dd20d809ec9823b128f6d918b68397d41f075/hydra_rbp-0.1.21.31-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:26,905   Found link https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.31
2023-12-15T04:56:26,906 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:56:26,907 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:56:26,908 Found index url https://www.piwheels.org/simple/
2023-12-15T04:56:27,064 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-12-15T04:56:27,066   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.29-py3-none-any.whl#sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:27,067   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:27,067   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T04:56:27,068 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T04:56:27,069 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-12-15T04:56:27,087 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-12-15T04:56:27,105 Collecting hydra-rbp==0.1.21.31
2023-12-15T04:56:27,107   Created temporary directory: /tmp/pip-unpack-t5tbct6o
2023-12-15T04:56:27,320   Downloading hydra_rbp-0.1.21.31.tar.gz (52.4 MB)
2023-12-15T04:56:49,187   Added hydra-rbp==0.1.21.31 from https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz to build tracker '/tmp/pip-build-tracker-1x1d6qji'
2023-12-15T04:56:49,189   Running setup.py (path:/tmp/pip-wheel-lvwbt34g/hydra-rbp_8661b440a6fb40aaac4a05d327a39f32/setup.py) egg_info for package hydra-rbp
2023-12-15T04:56:49,190   Created temporary directory: /tmp/pip-pip-egg-info-i1dn422i
2023-12-15T04:56:49,191   Preparing metadata (setup.py): started
2023-12-15T04:56:49,192   Running command python setup.py egg_info
2023-12-15T04:56:49,990   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T04:56:49,990   !!

2023-12-15T04:56:49,991           ********************************************************************************
2023-12-15T04:56:49,992           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T04:56:49,992           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T04:56:49,993           ********************************************************************************

2023-12-15T04:56:49,994   !!
2023-12-15T04:56:49,994     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T04:56:52,804   running egg_info
2023-12-15T04:56:52,805   creating /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info
2023-12-15T04:56:52,832   writing /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/PKG-INFO
2023-12-15T04:56:52,836   writing dependency_links to /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/dependency_links.txt
2023-12-15T04:56:52,838   writing entry points to /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/entry_points.txt
2023-12-15T04:56:52,839   writing requirements to /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/requires.txt
2023-12-15T04:56:52,840   writing top-level names to /tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/top_level.txt
2023-12-15T04:56:52,842   writing manifest file '/tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:52,953   reading manifest file '/tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:52,954   reading manifest template 'MANIFEST.in'
2023-12-15T04:56:52,958   adding license file 'LICENSE'
2023-12-15T04:56:52,963   writing manifest file '/tmp/pip-pip-egg-info-i1dn422i/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:53,073   Preparing metadata (setup.py): finished with status 'done'
2023-12-15T04:56:53,078   Source in /tmp/pip-wheel-lvwbt34g/hydra-rbp_8661b440a6fb40aaac4a05d327a39f32 has version 0.1.21.31, which satisfies requirement hydra-rbp==0.1.21.31 from https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz
2023-12-15T04:56:53,079   Removed hydra-rbp==0.1.21.31 from https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz from build tracker '/tmp/pip-build-tracker-1x1d6qji'
2023-12-15T04:56:53,085 Created temporary directory: /tmp/pip-unpack-1lqywuj9
2023-12-15T04:56:53,086 Created temporary directory: /tmp/pip-unpack-b17bjikw
2023-12-15T04:56:53,100 Building wheels for collected packages: hydra-rbp
2023-12-15T04:56:53,104   Created temporary directory: /tmp/pip-wheel-qvjfvhh5
2023-12-15T04:56:53,105   Building wheel for hydra-rbp (setup.py): started
2023-12-15T04:56:53,106   Destination directory: /tmp/pip-wheel-qvjfvhh5
2023-12-15T04:56:53,106   Running command python setup.py bdist_wheel
2023-12-15T04:56:53,827   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T04:56:53,827   !!

2023-12-15T04:56:53,828           ********************************************************************************
2023-12-15T04:56:53,829           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T04:56:53,829           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T04:56:53,830           ********************************************************************************

2023-12-15T04:56:53,831   !!
2023-12-15T04:56:53,831     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T04:56:54,311   running bdist_wheel
2023-12-15T04:56:54,411   running build
2023-12-15T04:56:54,411   running build_py
2023-12-15T04:56:54,439   creating build
2023-12-15T04:56:54,440   creating build/lib
2023-12-15T04:56:54,441   creating build/lib/HydRa
2023-12-15T04:56:54,442   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-12-15T04:56:54,445   copying HydRa/__init__.py -> build/lib/HydRa
2023-12-15T04:56:54,446   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-12-15T04:56:54,449   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-12-15T04:56:54,451   creating build/lib/HydRa/models
2023-12-15T04:56:54,452   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-12-15T04:56:54,455   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-12-15T04:56:54,457   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-12-15T04:56:54,460   creating build/lib/HydRa/evaluation
2023-12-15T04:56:54,461   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-12-15T04:56:54,463   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-12-15T04:56:54,465   creating build/lib/HydRa/training
2023-12-15T04:56:54,466   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-12-15T04:56:54,468   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-12-15T04:56:54,470   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T04:56:54,473   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T04:56:54,476   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-12-15T04:56:54,479   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-12-15T04:56:54,482   creating build/lib/HydRa/predictions
2023-12-15T04:56:54,483   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,487   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,488   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,490   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,493   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,496   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,499   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,500   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T04:56:54,505   creating build/lib/HydRa/preprocessing
2023-12-15T04:56:54,506   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:54,508   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:54,510   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:54,512   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:54,514   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-12-15T04:56:54,516   creating build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,517   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,519   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,521   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,522   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,524   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,526   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,527   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T04:56:54,529   creating build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:54,530   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:54,532   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T04:56:54,534   running egg_info
2023-12-15T04:56:54,585   writing hydra_rbp.egg-info/PKG-INFO
2023-12-15T04:56:54,589   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-12-15T04:56:54,591   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-12-15T04:56:54,592   writing requirements to hydra_rbp.egg-info/requires.txt
2023-12-15T04:56:54,593   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-12-15T04:56:54,636   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:54,639   reading manifest template 'MANIFEST.in'
2023-12-15T04:56:54,642   adding license file 'LICENSE'
2023-12-15T04:56:54,647   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T04:56:54,649   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-12-15T04:56:54,650   !!

2023-12-15T04:56:54,651           ********************************************************************************
2023-12-15T04:56:54,652           ############################
2023-12-15T04:56:54,652           # Package would be ignored #
2023-12-15T04:56:54,653           ############################
2023-12-15T04:56:54,653           Python recognizes 'HydRa.data' as an importable package[^1],
2023-12-15T04:56:54,654           but it is absent from setuptools' `packages` configuration.

2023-12-15T04:56:54,655           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T04:56:54,655           package, please make sure that 'HydRa.data' is explicitly added
2023-12-15T04:56:54,656           to the `packages` configuration field.

2023-12-15T04:56:54,657           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T04:56:54,657           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T04:56:54,658           instead of `find_packages(...)`/`find:`).

2023-12-15T04:56:54,659           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T04:56:54,660           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T04:56:54,661           If you don't want 'HydRa.data' to be distributed and are
2023-12-15T04:56:54,661           already explicitly excluding 'HydRa.data' via
2023-12-15T04:56:54,662           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T04:56:54,662           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T04:56:54,662           combination with a more fine grained `package-data` configuration.

2023-12-15T04:56:54,663           You can read more about "package data files" on setuptools documentation page:

2023-12-15T04:56:54,664           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T04:56:54,666           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T04:56:54,666                 even if it does not contain any `.py` files.
2023-12-15T04:56:54,667                 On the other hand, currently there is no concept of package data
2023-12-15T04:56:54,667                 directory, all directories are treated like packages.
2023-12-15T04:56:54,668           ********************************************************************************

2023-12-15T04:56:54,668   !!
2023-12-15T04:56:54,669     check.warn(importable)
2023-12-15T04:56:54,669   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-12-15T04:56:54,670   !!

2023-12-15T04:56:54,675           ********************************************************************************
2023-12-15T04:56:54,680           ############################
2023-12-15T04:56:54,685           # Package would be ignored #
2023-12-15T04:56:54,686           ############################
2023-12-15T04:56:54,687           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-12-15T04:56:54,687           but it is absent from setuptools' `packages` configuration.

2023-12-15T04:56:54,688           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T04:56:54,695           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-12-15T04:56:54,702           to the `packages` configuration field.

2023-12-15T04:56:54,707           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T04:56:54,708           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T04:56:54,708           instead of `find_packages(...)`/`find:`).

2023-12-15T04:56:54,709           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T04:56:54,710           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T04:56:54,711           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-12-15T04:56:54,712           already explicitly excluding 'HydRa.pre_trained' via
2023-12-15T04:56:54,712           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T04:56:54,713           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T04:56:54,713           combination with a more fine grained `package-data` configuration.

2023-12-15T04:56:54,715           You can read more about "package data files" on setuptools documentation page:

2023-12-15T04:56:54,716           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T04:56:54,718           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T04:56:54,718                 even if it does not contain any `.py` files.
2023-12-15T04:56:54,719                 On the other hand, currently there is no concept of package data
2023-12-15T04:56:54,720                 directory, all directories are treated like packages.
2023-12-15T04:56:54,721           ********************************************************************************

2023-12-15T04:56:54,722   !!
2023-12-15T04:56:54,722     check.warn(importable)
2023-12-15T04:56:54,722   creating build/lib/HydRa/data
2023-12-15T04:56:54,723   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:54,723   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:54,724   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-12-15T04:56:54,828   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T04:56:54,856   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T04:56:54,895   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:55,067   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T04:56:55,135   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-12-15T04:56:55,305   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T04:56:55,338   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T04:56:55,368   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,373   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,378   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:55,380   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:55,382   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:55,384   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-12-15T04:56:55,454   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T04:56:55,456   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,599   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,601   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,603   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:55,605   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-12-15T04:56:56,181   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:56,183   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T04:56:56,185   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-12-15T04:56:56,401   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-12-15T04:56:56,430   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-12-15T04:56:56,473   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-12-15T04:56:56,601   creating build/lib/HydRa/pre_trained
2023-12-15T04:56:56,601   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,627   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,654   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,657   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,721   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,724   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,789   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,793   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,797   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,816   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:56:56,833   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:57:00,367   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T04:57:02,262   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-15T04:57:02,263   !!

2023-12-15T04:57:02,264           ********************************************************************************
2023-12-15T04:57:02,265           Please avoid running ``setup.py`` directly.
2023-12-15T04:57:02,265           Instead, use pypa/build, pypa/installer or other
2023-12-15T04:57:02,266           standards-based tools.

2023-12-15T04:57:02,267           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-15T04:57:02,268           ********************************************************************************

2023-12-15T04:57:02,269   !!
2023-12-15T04:57:02,270     self.initialize_options()
2023-12-15T04:57:02,294   installing to build/bdist.linux-armv7l/wheel
2023-12-15T04:57:02,295   running install
2023-12-15T04:57:02,319   running install_lib
2023-12-15T04:57:02,348   creating build/bdist.linux-armv7l
2023-12-15T04:57:02,349   creating build/bdist.linux-armv7l/wheel
2023-12-15T04:57:02,352   creating build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:57:02,354   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:57:02,356   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:57:02,361   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:57:02,366   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T04:57:02,411   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:57:02,412   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:57:02,416   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T04:57:02,422   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:57:02,472   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,474   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,645   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,648   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,656   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,659   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,773   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,849   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,878   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,910   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,912   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,914   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:02,916   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,041   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,075   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,266   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,296   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,319   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,321   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,323   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,390   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,391   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,411   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:03,591   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,150   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,290   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,292   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,402   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,407   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T04:57:04,447   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:57:04,449   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,450   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,453   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,455   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,459   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,462   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,465   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T04:57:04,467   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:57:04,470   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,471   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,475   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,477   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,479   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,482   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,485   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,488   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,490   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T04:57:04,495   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:04,496   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,489   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,492   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,496   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,525   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,528   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,589   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,607   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,610   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:07,635   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:08,592   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:08,612   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T04:57:08,670   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T04:57:08,673   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,674   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,677   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,679   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,681   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,683   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,685   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,687   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,690   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,692   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,694   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,696   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T04:57:08,698   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:57:08,699   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:57:08,701   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T04:57:08,704   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,706   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T04:57:08,708   running install_egg_info
2023-12-15T04:57:08,736   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.31-py3.11.egg-info
2023-12-15T04:57:08,750   running install_scripts
2023-12-15T04:57:08,767   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.31.dist-info/WHEEL
2023-12-15T04:57:08,770   creating '/tmp/pip-wheel-qvjfvhh5/hydra_rbp-0.1.21.31-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T04:57:08,775   adding 'HydRa/HydRa2_0_predict.py'
2023-12-15T04:57:08,780   adding 'HydRa/HydRa_predict.py'
2023-12-15T04:57:08,781   adding 'HydRa/__init__.py'
2023-12-15T04:57:08,783   adding 'HydRa/test_data_load.py'
2023-12-15T04:57:09,174   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-12-15T04:57:09,542   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-12-15T04:57:11,727   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-12-15T04:57:12,286   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-12-15T04:57:13,032   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-12-15T04:57:16,530   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T04:57:17,720   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T04:57:21,112   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-12-15T04:57:21,747   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T04:57:22,325   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T04:57:22,383   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-12-15T04:57:22,428   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-12-15T04:57:22,431   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T04:57:22,432   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-12-15T04:57:22,434   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-12-15T04:57:23,555   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-12-15T04:57:23,586   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T04:57:25,282   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-12-15T04:57:25,344   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-12-15T04:57:25,346   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:57:25,348   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:57:28,664   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-12-15T04:57:28,909   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:57:28,911   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T04:57:30,382   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-12-15T04:57:30,890   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-12-15T04:57:31,470   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-12-15T04:57:33,843   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-12-15T04:57:33,897   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-12-15T04:57:33,899   adding 'HydRa/evaluation/__init__.py'
2023-12-15T04:57:33,903   adding 'HydRa/models/DNN_seq.py'
2023-12-15T04:57:33,907   adding 'HydRa/models/Sequence_class.py'
2023-12-15T04:57:33,908   adding 'HydRa/models/__init__.py'
2023-12-15T04:57:34,138   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T04:57:34,374   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T04:57:34,386   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-12-15T04:57:34,999   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-12-15T04:57:35,025   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-12-15T04:57:35,637   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-12-15T04:57:35,667   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T04:57:35,675   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T04:57:35,772   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T04:57:35,878   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T04:57:40,823   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-12-15T04:57:44,178   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-12-15T04:57:44,590   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-12-15T04:57:44,595   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-12-15T04:57:44,597   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-12-15T04:57:44,602   adding 'HydRa/predictions/Occlusion_map.py'
2023-12-15T04:57:44,609   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-12-15T04:57:44,618   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-12-15T04:57:44,628   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-12-15T04:57:44,630   adding 'HydRa/predictions/__init__.py'
2023-12-15T04:57:44,633   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-12-15T04:57:44,635   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-12-15T04:57:44,636   adding 'HydRa/preprocessing/__init__.py'
2023-12-15T04:57:44,638   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-12-15T04:57:44,639   adding 'HydRa/preprocessing/predict_SS.py'
2023-12-15T04:57:44,641   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-12-15T04:57:44,643   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-12-15T04:57:44,645   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-12-15T04:57:44,646   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-12-15T04:57:44,648   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-12-15T04:57:44,649   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-12-15T04:57:44,651   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-12-15T04:57:44,653   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-12-15T04:57:44,654   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-12-15T04:57:44,656   adding 'HydRa/training/__init__.py'
2023-12-15T04:57:44,660   adding 'HydRa/training/train_HydRa.py'
2023-12-15T04:57:44,665   adding 'HydRa/training/train_HydRa2_0.py'
2023-12-15T04:57:44,671   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-12-15T04:57:44,676   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-12-15T04:57:44,681   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-12-15T04:57:44,684   adding 'hydra_rbp-0.1.21.31.dist-info/LICENSE'
2023-12-15T04:57:44,686   adding 'hydra_rbp-0.1.21.31.dist-info/METADATA'
2023-12-15T04:57:44,688   adding 'hydra_rbp-0.1.21.31.dist-info/WHEEL'
2023-12-15T04:57:44,689   adding 'hydra_rbp-0.1.21.31.dist-info/entry_points.txt'
2023-12-15T04:57:44,690   adding 'hydra_rbp-0.1.21.31.dist-info/top_level.txt'
2023-12-15T04:57:44,692   adding 'hydra_rbp-0.1.21.31.dist-info/RECORD'
2023-12-15T04:57:44,724   removing build/bdist.linux-armv7l/wheel
2023-12-15T04:57:44,969   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-12-15T04:57:46,118   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.31-py3-none-any.whl size=53775105 sha256=176bbf98f3d5e29b7c9a5236b92d239567dab6b746703603818e840e0a7857db
2023-12-15T04:57:46,120   Stored in directory: /tmp/pip-ephem-wheel-cache-xpbmejsf/wheels/f0/b2/89/d256e6ae928c4ef728df40e16c61bc21e2972a63282dcc9b3f
2023-12-15T04:57:46,150 Successfully built hydra-rbp
2023-12-15T04:57:47,340 Removed build tracker: '/tmp/pip-build-tracker-1x1d6qji'