2023-12-15T05:58:22,053 Created temporary directory: /tmp/pip-build-tracker-uwk61p6q
2023-12-15T05:58:22,054 Initialized build tracking at /tmp/pip-build-tracker-uwk61p6q
2023-12-15T05:58:22,054 Created build tracker: /tmp/pip-build-tracker-uwk61p6q
2023-12-15T05:58:22,055 Entered build tracker: /tmp/pip-build-tracker-uwk61p6q
2023-12-15T05:58:22,056 Created temporary directory: /tmp/pip-wheel-grnnnts8
2023-12-15T05:58:22,059 Created temporary directory: /tmp/pip-ephem-wheel-cache-wa7etoee
2023-12-15T05:58:22,084 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T05:58:22,087 2 location(s) to search for versions of hydra-rbp:
2023-12-15T05:58:22,087 * https://pypi.org/simple/hydra-rbp/
2023-12-15T05:58:22,087 * https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T05:58:22,088 Fetching project page and analyzing links: https://pypi.org/simple/hydra-rbp/
2023-12-15T05:58:22,089 Getting page https://pypi.org/simple/hydra-rbp/
2023-12-15T05:58:22,090 Found index url https://pypi.org/simple/
2023-12-15T05:58:22,313 Fetched page https://pypi.org/simple/hydra-rbp/ as application/vnd.pypi.simple.v1+json
2023-12-15T05:58:22,316   Found link https://files.pythonhosted.org/packages/c5/09/447109100c21cdb2df7a02685baa6324ffad284da0f14a3cfb6ce4b64972/hydra_rbp-0.1.21.27.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.27
2023-12-15T05:58:22,317   Found link https://files.pythonhosted.org/packages/f3/d2/ff965058796232582106702bd93d72d0bdce3920bd9ae52773bfd8a8db71/hydra_rbp-0.1.21.28.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.28
2023-12-15T05:58:22,318   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/dd/03/db9334056fd0aeda9ecc38c591895e544b6f4530b5003a50dcdb3773bd05/hydra_rbp-0.1.21.29-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,319   Found link https://files.pythonhosted.org/packages/49/44/f12c30956623421691997bd996a83708903dbf9f1a0aef3f06b3b209c780/hydra_rbp-0.1.21.29.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.29
2023-12-15T05:58:22,319   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/2b/eb/56bd5fd43ae21430c6fb8b13146c9f39e742ed414207aaadf1c3657266f3/hydra_rbp-0.1.21.30-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,320   Found link https://files.pythonhosted.org/packages/83/7c/f7f088132d9ff564207a99897d2c0375b7a9663214d221f5a06fccfd32db/hydra_rbp-0.1.21.30.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.30
2023-12-15T05:58:22,321   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/e5/2d/54a09009e4b876ab35dce61dd20d809ec9823b128f6d918b68397d41f075/hydra_rbp-0.1.21.31-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,322   Found link https://files.pythonhosted.org/packages/f7/dc/a9b087b4d2c0d4a9719f850141f5f3bd7d43e54f8494456ee8aaec507a62/hydra_rbp-0.1.21.31.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.31
2023-12-15T05:58:22,323   Skipping link: No binaries permitted for hydra-rbp: https://files.pythonhosted.org/packages/ed/14/bd88a23bf60ddc41af6967b180df6a81ca3a07e61a92caccd61004eb7bec/hydra_rbp-0.1.21.32-py3-none-any.whl (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,324   Found link https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz (from https://pypi.org/simple/hydra-rbp/) (requires-python:>=3.6), version: 0.1.21.32
2023-12-15T05:58:22,325 Fetching project page and analyzing links: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T05:58:22,325 Getting page https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T05:58:22,327 Found index url https://www.piwheels.org/simple/
2023-12-15T05:58:22,499 Fetched page https://www.piwheels.org/simple/hydra-rbp/ as text/html
2023-12-15T05:58:22,501   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.31-py3-none-any.whl#sha256=176bbf98f3d5e29b7c9a5236b92d239567dab6b746703603818e840e0a7857db (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,502   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.30-py3-none-any.whl#sha256=997fd56e129174ba095b515d6883360d8b23cca3c8c83ddeb33c988e0bcc39c8 (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,503   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.29-py3-none-any.whl#sha256=e1ffbf05d3124e9af44781389df5f63a7ba227f3dcf8c98cbdb55b4eda436c9b (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,503   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.28-py3-none-any.whl#sha256=2dce1c5216cc6dfeb287ba82fc7ecc0f084574aebca3a134b3d2dd9c2c0bd3dc (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,504   Skipping link: No binaries permitted for hydra-rbp: https://www.piwheels.org/simple/hydra-rbp/hydra_rbp-0.1.21.27-py3-none-any.whl#sha256=c9ac5819931db90ef2e745d6179b24dc2bdc396044ae3c6ceaef7dbadbe6a45a (from https://www.piwheels.org/simple/hydra-rbp/) (requires-python:>=3.6)
2023-12-15T05:58:22,504 Skipping link: not a file: https://www.piwheels.org/simple/hydra-rbp/
2023-12-15T05:58:22,505 Skipping link: not a file: https://pypi.org/simple/hydra-rbp/
2023-12-15T05:58:22,523 Given no hashes to check 1 links for project 'hydra-rbp': discarding no candidates
2023-12-15T05:58:22,541 Collecting hydra-rbp==0.1.21.32
2023-12-15T05:58:22,543   Created temporary directory: /tmp/pip-unpack-5h245usd
2023-12-15T05:58:22,761   Downloading hydra_rbp-0.1.21.32.tar.gz (52.4 MB)
2023-12-15T05:58:40,903   Added hydra-rbp==0.1.21.32 from https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz to build tracker '/tmp/pip-build-tracker-uwk61p6q'
2023-12-15T05:58:40,905   Running setup.py (path:/tmp/pip-wheel-grnnnts8/hydra-rbp_d0194546b6744a2c9072e75aaf2eec8c/setup.py) egg_info for package hydra-rbp
2023-12-15T05:58:40,906   Created temporary directory: /tmp/pip-pip-egg-info-_8cs63fk
2023-12-15T05:58:40,907   Preparing metadata (setup.py): started
2023-12-15T05:58:40,908   Running command python setup.py egg_info
2023-12-15T05:58:41,610   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T05:58:41,610   !!

2023-12-15T05:58:41,612           ********************************************************************************
2023-12-15T05:58:41,612           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T05:58:41,613           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T05:58:41,613           ********************************************************************************

2023-12-15T05:58:41,615   !!
2023-12-15T05:58:41,615     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T05:58:44,681   running egg_info
2023-12-15T05:58:44,683   creating /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info
2023-12-15T05:58:44,711   writing /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/PKG-INFO
2023-12-15T05:58:44,714   writing dependency_links to /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/dependency_links.txt
2023-12-15T05:58:44,716   writing entry points to /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/entry_points.txt
2023-12-15T05:58:44,718   writing requirements to /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/requires.txt
2023-12-15T05:58:44,719   writing top-level names to /tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/top_level.txt
2023-12-15T05:58:44,720   writing manifest file '/tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T05:58:44,834   reading manifest file '/tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T05:58:44,836   reading manifest template 'MANIFEST.in'
2023-12-15T05:58:44,839   adding license file 'LICENSE'
2023-12-15T05:58:44,844   writing manifest file '/tmp/pip-pip-egg-info-_8cs63fk/hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T05:58:44,951   Preparing metadata (setup.py): finished with status 'done'
2023-12-15T05:58:44,955   Source in /tmp/pip-wheel-grnnnts8/hydra-rbp_d0194546b6744a2c9072e75aaf2eec8c has version 0.1.21.32, which satisfies requirement hydra-rbp==0.1.21.32 from https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz
2023-12-15T05:58:44,956   Removed hydra-rbp==0.1.21.32 from https://files.pythonhosted.org/packages/42/1a/4e011525c4acc37587aaeda8cb1a4a43c18024f828a7f2a944838804fd20/hydra_rbp-0.1.21.32.tar.gz from build tracker '/tmp/pip-build-tracker-uwk61p6q'
2023-12-15T05:58:44,962 Created temporary directory: /tmp/pip-unpack-7ql5od26
2023-12-15T05:58:44,963 Created temporary directory: /tmp/pip-unpack-fnk_k_4o
2023-12-15T05:58:44,976 Building wheels for collected packages: hydra-rbp
2023-12-15T05:58:44,980   Created temporary directory: /tmp/pip-wheel-90_cb8vt
2023-12-15T05:58:44,981   Building wheel for hydra-rbp (setup.py): started
2023-12-15T05:58:44,982   Destination directory: /tmp/pip-wheel-90_cb8vt
2023-12-15T05:58:44,982   Running command python setup.py bdist_wheel
2023-12-15T05:58:45,648   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2023-12-15T05:58:45,648   !!

2023-12-15T05:58:45,649           ********************************************************************************
2023-12-15T05:58:45,650           Requirements should be satisfied by a PEP 517 installer.
2023-12-15T05:58:45,651           If you are using pip, you can try `pip install --use-pep517`.
2023-12-15T05:58:45,651           ********************************************************************************

2023-12-15T05:58:45,652   !!
2023-12-15T05:58:45,653     dist.fetch_build_eggs(dist.setup_requires)
2023-12-15T05:58:46,134   running bdist_wheel
2023-12-15T05:58:46,247   running build
2023-12-15T05:58:46,248   running build_py
2023-12-15T05:58:46,276   creating build
2023-12-15T05:58:46,276   creating build/lib
2023-12-15T05:58:46,277   creating build/lib/HydRa
2023-12-15T05:58:46,278   copying HydRa/test_data_load.py -> build/lib/HydRa
2023-12-15T05:58:46,280   copying HydRa/HydRa_predict.py -> build/lib/HydRa
2023-12-15T05:58:46,283   copying HydRa/HydRa2_0_predict.py -> build/lib/HydRa
2023-12-15T05:58:46,285   copying HydRa/__init__.py -> build/lib/HydRa
2023-12-15T05:58:46,288   creating build/lib/HydRa/models
2023-12-15T05:58:46,288   copying HydRa/models/DNN_seq.py -> build/lib/HydRa/models
2023-12-15T05:58:46,292   copying HydRa/models/Sequence_class.py -> build/lib/HydRa/models
2023-12-15T05:58:46,294   copying HydRa/models/__init__.py -> build/lib/HydRa/models
2023-12-15T05:58:46,297   creating build/lib/HydRa/predictions
2023-12-15T05:58:46,298   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,302   copying HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,304   copying HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,308   copying HydRa/predictions/Occlusion_map_v2.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,311   copying HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,316   copying HydRa/predictions/Occlusion_1D_analysis_2.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,318   copying HydRa/predictions/Occlusion_map.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,322   copying HydRa/predictions/__init__.py -> build/lib/HydRa/predictions
2023-12-15T05:58:46,324   creating build/lib/HydRa/preprocessing
2023-12-15T05:58:46,326   copying HydRa/preprocessing/get_SVM_seq_features.py -> build/lib/HydRa/preprocessing
2023-12-15T05:58:46,328   copying HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/lib/HydRa/preprocessing
2023-12-15T05:58:46,330   copying HydRa/preprocessing/PPI_feature_generation.py -> build/lib/HydRa/preprocessing
2023-12-15T05:58:46,333   copying HydRa/preprocessing/__init__.py -> build/lib/HydRa/preprocessing
2023-12-15T05:58:46,335   copying HydRa/preprocessing/predict_SS.py -> build/lib/HydRa/preprocessing
2023-12-15T05:58:46,338   creating build/lib/HydRa/training
2023-12-15T05:58:46,339   copying HydRa/training/train_and_evaluate_HydRa_bk.py -> build/lib/HydRa/training
2023-12-15T05:58:46,342   copying HydRa/training/train_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T05:58:46,345   copying HydRa/training/train_and_evaluate_HydRa2_0.py -> build/lib/HydRa/training
2023-12-15T05:58:46,347   copying HydRa/training/train_and_evaluate_HydRa.py -> build/lib/HydRa/training
2023-12-15T05:58:46,350   copying HydRa/training/train_HydRa.py -> build/lib/HydRa/training
2023-12-15T05:58:46,353   copying HydRa/training/__init__.py -> build/lib/HydRa/training
2023-12-15T05:58:46,355   creating build/lib/HydRa/evaluation
2023-12-15T05:58:46,355   copying HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/lib/HydRa/evaluation
2023-12-15T05:58:46,357   copying HydRa/evaluation/__init__.py -> build/lib/HydRa/evaluation
2023-12-15T05:58:46,359   creating build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:46,360   copying HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:46,362   copying HydRa/preprocessing/Feature_selection/__init__.py -> build/lib/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:46,365   creating build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,366   copying HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,367   copying HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,370   copying HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,372   copying HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,374   copying HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,375   copying HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,377   copying HydRa/preprocessing/Feature_generation/__init__.py -> build/lib/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:46,379   running egg_info
2023-12-15T05:58:46,430   writing hydra_rbp.egg-info/PKG-INFO
2023-12-15T05:58:46,434   writing dependency_links to hydra_rbp.egg-info/dependency_links.txt
2023-12-15T05:58:46,436   writing entry points to hydra_rbp.egg-info/entry_points.txt
2023-12-15T05:58:46,437   writing requirements to hydra_rbp.egg-info/requires.txt
2023-12-15T05:58:46,438   writing top-level names to hydra_rbp.egg-info/top_level.txt
2023-12-15T05:58:46,480   reading manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T05:58:46,484   reading manifest template 'MANIFEST.in'
2023-12-15T05:58:46,487   adding license file 'LICENSE'
2023-12-15T05:58:46,492   writing manifest file 'hydra_rbp.egg-info/SOURCES.txt'
2023-12-15T05:58:46,495   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.data' is absent from the `packages` configuration.
2023-12-15T05:58:46,495   !!

2023-12-15T05:58:46,497           ********************************************************************************
2023-12-15T05:58:46,497           ############################
2023-12-15T05:58:46,497           # Package would be ignored #
2023-12-15T05:58:46,498           ############################
2023-12-15T05:58:46,498           Python recognizes 'HydRa.data' as an importable package[^1],
2023-12-15T05:58:46,499           but it is absent from setuptools' `packages` configuration.

2023-12-15T05:58:46,500           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T05:58:46,500           package, please make sure that 'HydRa.data' is explicitly added
2023-12-15T05:58:46,500           to the `packages` configuration field.

2023-12-15T05:58:46,501           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T05:58:46,501           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T05:58:46,502           instead of `find_packages(...)`/`find:`).

2023-12-15T05:58:46,503           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T05:58:46,504           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T05:58:46,505           If you don't want 'HydRa.data' to be distributed and are
2023-12-15T05:58:46,505           already explicitly excluding 'HydRa.data' via
2023-12-15T05:58:46,506           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T05:58:46,506           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T05:58:46,507           combination with a more fine grained `package-data` configuration.

2023-12-15T05:58:46,508           You can read more about "package data files" on setuptools documentation page:

2023-12-15T05:58:46,509           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T05:58:46,511           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T05:58:46,511                 even if it does not contain any `.py` files.
2023-12-15T05:58:46,512                 On the other hand, currently there is no concept of package data
2023-12-15T05:58:46,513                 directory, all directories are treated like packages.
2023-12-15T05:58:46,513           ********************************************************************************

2023-12-15T05:58:46,517   !!
2023-12-15T05:58:46,519     check.warn(importable)
2023-12-15T05:58:46,525   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'HydRa.pre_trained' is absent from the `packages` configuration.
2023-12-15T05:58:46,529   !!

2023-12-15T05:58:46,531           ********************************************************************************
2023-12-15T05:58:46,531           ############################
2023-12-15T05:58:46,532           # Package would be ignored #
2023-12-15T05:58:46,533           ############################
2023-12-15T05:58:46,533           Python recognizes 'HydRa.pre_trained' as an importable package[^1],
2023-12-15T05:58:46,534           but it is absent from setuptools' `packages` configuration.

2023-12-15T05:58:46,535           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T05:58:46,535           package, please make sure that 'HydRa.pre_trained' is explicitly added
2023-12-15T05:58:46,536           to the `packages` configuration field.

2023-12-15T05:58:46,537           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T05:58:46,538           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T05:58:46,543           instead of `find_packages(...)`/`find:`).

2023-12-15T05:58:46,548           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T05:58:46,552           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T05:58:46,553           If you don't want 'HydRa.pre_trained' to be distributed and are
2023-12-15T05:58:46,553           already explicitly excluding 'HydRa.pre_trained' via
2023-12-15T05:58:46,561           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T05:58:46,561           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T05:58:46,562           combination with a more fine grained `package-data` configuration.

2023-12-15T05:58:46,563           You can read more about "package data files" on setuptools documentation page:

2023-12-15T05:58:46,564           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T05:58:46,565           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T05:58:46,566                 even if it does not contain any `.py` files.
2023-12-15T05:58:46,566                 On the other hand, currently there is no concept of package data
2023-12-15T05:58:46,566                 directory, all directories are treated like packages.
2023-12-15T05:58:46,567           ********************************************************************************

2023-12-15T05:58:46,568   !!
2023-12-15T05:58:46,568     check.warn(importable)
2023-12-15T05:58:46,574   creating build/lib/HydRa/data
2023-12-15T05:58:46,575   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,575   copying HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,576   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/lib/HydRa/data
2023-12-15T05:58:46,663   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,688   copying HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,725   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,886   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T05:58:46,992   copying HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/lib/HydRa/data
2023-12-15T05:58:47,185   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/lib/HydRa/data
2023-12-15T05:58:47,229   copying HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/lib/HydRa/data
2023-12-15T05:58:47,274   copying HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,280   copying HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,287   copying HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T05:58:47,290   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T05:58:47,292   copying HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T05:58:47,294   copying HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/lib/HydRa/data
2023-12-15T05:58:47,461   copying HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/lib/HydRa/data
2023-12-15T05:58:47,464   copying HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,787   copying HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,790   copying HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,794   copying HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T05:58:47,798   copying HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/lib/HydRa/data
2023-12-15T05:58:48,407   copying HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T05:58:48,409   copying HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/lib/HydRa/data
2023-12-15T05:58:48,411   copying HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/lib/HydRa/data
2023-12-15T05:58:48,474   copying HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/lib/HydRa/data
2023-12-15T05:58:48,503   copying HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/lib/HydRa/data
2023-12-15T05:58:48,546   copying HydRa/data/protVec_100d_3grams.csv -> build/lib/HydRa/data
2023-12-15T05:58:48,676   creating build/lib/HydRa/pre_trained
2023-12-15T05:58:48,677   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,707   copying HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,737   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,740   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,804   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,807   copying HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,868   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,872   copying HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,875   copying HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,897   copying HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/lib/HydRa/pre_trained
2023-12-15T05:58:48,915   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T05:58:51,880   copying HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/lib/HydRa/pre_trained
2023-12-15T05:58:52,820   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-15T05:58:52,820   !!

2023-12-15T05:58:52,821           ********************************************************************************
2023-12-15T05:58:52,822           Please avoid running ``setup.py`` directly.
2023-12-15T05:58:52,822           Instead, use pypa/build, pypa/installer or other
2023-12-15T05:58:52,823           standards-based tools.

2023-12-15T05:58:52,824           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-15T05:58:52,824           ********************************************************************************

2023-12-15T05:58:52,825   !!
2023-12-15T05:58:52,825     self.initialize_options()
2023-12-15T05:58:52,848   installing to build/bdist.linux-armv7l/wheel
2023-12-15T05:58:52,848   running install
2023-12-15T05:58:52,873   running install_lib
2023-12-15T05:58:52,900   creating build/bdist.linux-armv7l
2023-12-15T05:58:52,900   creating build/bdist.linux-armv7l/wheel
2023-12-15T05:58:52,902   creating build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T05:58:52,904   creating build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:52,905   copying build/lib/HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:52,946   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,055   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,077   copying build/lib/HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,229   copying build/lib/HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,231   copying build/lib/HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,234   copying build/lib/HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,239   copying build/lib/HydRa/data/protVec_100d_3grams.csv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,366   copying build/lib/HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,442   copying build/lib/HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,444   copying build/lib/HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,471   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,473   copying build/lib/HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,541   copying build/lib/HydRa/data/Combined10RBPlist_uniprotID_20190716.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,546   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,578   copying build/lib/HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,580   copying build/lib/HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,582   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,652   copying build/lib/HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,684   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:53,849   copying build/lib/HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,388   copying build/lib/HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,421   copying build/lib/HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,424   copying build/lib/HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,426   copying build/lib/HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,596   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,627   copying build/lib/HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,662   copying build/lib/HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl -> build/bdist.linux-armv7l/wheel/HydRa/data
2023-12-15T05:58:54,664   copying build/lib/HydRa/test_data_load.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T05:58:54,666   creating build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T05:58:54,667   copying build/lib/HydRa/models/DNN_seq.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T05:58:54,670   copying build/lib/HydRa/models/Sequence_class.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T05:58:54,673   copying build/lib/HydRa/models/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/models
2023-12-15T05:58:54,675   creating build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,676   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,679   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,681   copying build/lib/HydRa/predictions/Occlusion_map_v3_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,685   copying build/lib/HydRa/predictions/Occlusion_map_v2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,688   copying build/lib/HydRa/predictions/Occlusion_map_v2_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,692   copying build/lib/HydRa/predictions/Occlusion_1D_analysis_2.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,694   copying build/lib/HydRa/predictions/Occlusion_map.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,696   copying build/lib/HydRa/predictions/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/predictions
2023-12-15T05:58:54,698   copying build/lib/HydRa/HydRa_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T05:58:54,701   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,702   copying build/lib/HydRa/preprocessing/get_SVM_seq_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,704   copying build/lib/HydRa/preprocessing/Get_All_selected_SVM_features.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,706   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:54,707   copying build/lib/HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:54,709   copying build/lib/HydRa/preprocessing/Feature_selection/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_selection
2023-12-15T05:58:54,711   copying build/lib/HydRa/preprocessing/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,713   creating build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,714   copying build/lib/HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,716   copying build/lib/HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,718   copying build/lib/HydRa/preprocessing/Feature_generation/PPI_feature_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,721   copying build/lib/HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,722   copying build/lib/HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,724   copying build/lib/HydRa/preprocessing/Feature_generation/kmer_table_generation.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,726   copying build/lib/HydRa/preprocessing/Feature_generation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing/Feature_generation
2023-12-15T05:58:54,728   copying build/lib/HydRa/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,730   copying build/lib/HydRa/preprocessing/predict_SS.py -> build/bdist.linux-armv7l/wheel/HydRa/preprocessing
2023-12-15T05:58:54,732   copying build/lib/HydRa/HydRa2_0_predict.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T05:58:54,735   creating build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:54,736   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:54,739   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:55,669   copying build/lib/HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:55,686   copying build/lib/HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,806   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,829   copying build/lib/HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,856   copying build/lib/HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,874   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,942   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,944   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,946   copying build/lib/HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:58,949   copying build/lib/HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5 -> build/bdist.linux-armv7l/wheel/HydRa/pre_trained
2023-12-15T05:58:59,010   creating build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,011   copying build/lib/HydRa/training/train_and_evaluate_HydRa_bk.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,014   copying build/lib/HydRa/training/train_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,016   copying build/lib/HydRa/training/train_and_evaluate_HydRa2_0.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,019   copying build/lib/HydRa/training/train_and_evaluate_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,022   copying build/lib/HydRa/training/train_HydRa.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,025   copying build/lib/HydRa/training/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/training
2023-12-15T05:58:59,027   copying build/lib/HydRa/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa
2023-12-15T05:58:59,029   creating build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T05:58:59,030   copying build/lib/HydRa/evaluation/ROC_PR_AUC_analysis.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T05:58:59,032   copying build/lib/HydRa/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/HydRa/evaluation
2023-12-15T05:58:59,034   running install_egg_info
2023-12-15T05:58:59,061   Copying hydra_rbp.egg-info to build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.32-py3.11.egg-info
2023-12-15T05:58:59,073   running install_scripts
2023-12-15T05:58:59,090   creating build/bdist.linux-armv7l/wheel/hydra_rbp-0.1.21.32.dist-info/WHEEL
2023-12-15T05:58:59,093   creating '/tmp/pip-wheel-90_cb8vt/hydra_rbp-0.1.21.32-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T05:58:59,098   adding 'HydRa/HydRa2_0_predict.py'
2023-12-15T05:58:59,102   adding 'HydRa/HydRa_predict.py'
2023-12-15T05:58:59,103   adding 'HydRa/__init__.py'
2023-12-15T05:58:59,105   adding 'HydRa/test_data_load.py'
2023-12-15T05:58:59,493   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_menthaBioPlex_STRING.tsv'
2023-12-15T05:58:59,870   adding 'HydRa/data/Classification_cv_scores_AllRuns_SONAR+_final_Ensemble_17_3_7_3_combined10RBPlist_noSS_menthaBioPlex_STRING.tsv'
2023-12-15T05:59:02,044   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_AddNoSS_trainedWithWholeDataset.xls'
2023-12-15T05:59:02,601   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_noSS_trainedWithWholeDataset.tsv'
2023-12-15T05:59:03,345   adding 'HydRa/data/Classification_scores_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_trainedWithWholeDataset.tsv'
2023-12-15T05:59:06,710   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T05:59:07,897   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T05:59:11,281   adding 'HydRa/data/Classification_scores_TrainingWithTheWholeProteinSet_final_model_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv.bk'
2023-12-15T05:59:11,911   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING.tsv'
2023-12-15T05:59:12,491   adding 'HydRa/data/Classification_scores_reference_cv_HydRa2.0_DNN_SVM_ProteinBERT_menthaBioPlex_STRING_noSS.tsv'
2023-12-15T05:59:12,546   adding 'HydRa/data/Combined10RBPlist_uniprotID_20190716.txt'
2023-12-15T05:59:12,589   adding 'HydRa/data/Combined8RBPlist_plusOOPSXRNAXsharedRBPs_uniprotID_20190717.txt'
2023-12-15T05:59:12,593   adding 'HydRa/data/FromOrelOcclRun_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T05:59:12,594   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_avg_zscores_statistics.pkl'
2023-12-15T05:59:12,596   adding 'HydRa/data/HydRa2.0_noSS_Occlusion_maps_seqSVM_seqDNN_ProteinBERT_proteinLengthWiseFib_scores_statistics.pkl'
2023-12-15T05:59:13,714   adding 'HydRa/data/HydRa2.0_proteins_with_RBP_categories_RBPflagCorrected_Nov2021_new.tsv'
2023-12-15T05:59:13,746   adding 'HydRa/data/HydRa_v4_7_3_Occlusion_maps_seqSVM_seqDNN_scores_statistics.pkl'
2023-12-15T05:59:15,438   adding 'HydRa/data/STRING_v10.5_uniprot_edgelist_withoutExperimentalData.txt'
2023-12-15T05:59:15,501   adding 'HydRa/data/SVM_AAC_chi2_alpha0.01_selected_features_From_WholeDataSet_AACname.txt'
2023-12-15T05:59:15,503   adding 'HydRa/data/SVM_SS_11mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T05:59:15,505   adding 'HydRa/data/SVM_SS_15mer_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T05:59:18,819   adding 'HydRa/data/SVM_SeqFeature_table_comined_all_selected_features_From_WholeDataset_12Apr_AACname.txt'
2023-12-15T05:59:19,065   adding 'HydRa/data/SVM_mer3_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T05:59:19,067   adding 'HydRa/data/SVM_mer4_chi2_alpha0.01_with_LinearSVC_selected_features_From_WholeDataSet.txt'
2023-12-15T05:59:20,532   adding 'HydRa/data/mentha20180108_BioPlex2.0_edgelist.txt'
2023-12-15T05:59:21,039   adding 'HydRa/data/menthaBioPlex_feature_table_combined10RBPlist.xls'
2023-12-15T05:59:21,617   adding 'HydRa/data/menthaBioPlex_separatedSTRING_feature_table_combined8RBPlistAddingOOPSXRNAX.xls'
2023-12-15T05:59:23,980   adding 'HydRa/data/protVec_100d_3grams.csv'
2023-12-15T05:59:24,035   adding 'HydRa/evaluation/ROC_PR_AUC_analysis.py'
2023-12-15T05:59:24,036   adding 'HydRa/evaluation/__init__.py'
2023-12-15T05:59:24,041   adding 'HydRa/models/DNN_seq.py'
2023-12-15T05:59:24,045   adding 'HydRa/models/Sequence_class.py'
2023-12-15T05:59:24,047   adding 'HydRa/models/__init__.py'
2023-12-15T05:59:24,276   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T05:59:24,512   adding 'HydRa/pre_trained/CNN_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T05:59:24,524   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_structure.json'
2023-12-15T05:59:25,136   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_model_weights.h5'
2023-12-15T05:59:25,162   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_structure.json'
2023-12-15T05:59:25,774   adding 'HydRa/pre_trained/DNN_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_model_weights.h5'
2023-12-15T05:59:25,805   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_OOPSXRNAXadded.h5'
2023-12-15T05:59:25,812   adding 'HydRa/pre_trained/DenseI21_5_autoencoder_2CNN2MaxPool_64filter5_2poollength_first1500aa_withRBPs_noSS_OOPSXRNAXadded.h5'
2023-12-15T05:59:25,909   adding 'HydRa/pre_trained/SVM_PPI_MB-S_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T05:59:26,014   adding 'HydRa/pre_trained/SVM_PPI_MB_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pkl'
2023-12-15T05:59:30,957   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_ModelFile.pickle.pkl'
2023-12-15T05:59:34,324   adding 'HydRa/pre_trained/SVM_seqOnly_trainedWithWholeDataset_menthaBioPlexSTRING_Final_Model_v4_7_3_MenthaBioPlex_STRING_AddingOOPSXRNAXlabels_newSklearn0.22.1_noSS_WithNoSSmodel_ModelFile.pickle.pkl'
2023-12-15T05:59:34,737   adding 'HydRa/predictions/Occlusion_1D_analysis_2.py'
2023-12-15T05:59:34,742   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124.py'
2023-12-15T05:59:34,744   adding 'HydRa/predictions/Occlusion_1D_analysis_SONARplus_intrinsic_on_WuhanVirus_20200124_ensScore.py'
2023-12-15T05:59:34,749   adding 'HydRa/predictions/Occlusion_map.py'
2023-12-15T05:59:34,756   adding 'HydRa/predictions/Occlusion_map_v2.py'
2023-12-15T05:59:34,765   adding 'HydRa/predictions/Occlusion_map_v2_HydRa2_0.py'
2023-12-15T05:59:34,775   adding 'HydRa/predictions/Occlusion_map_v3_HydRa2_0.py'
2023-12-15T05:59:34,777   adding 'HydRa/predictions/__init__.py'
2023-12-15T05:59:34,780   adding 'HydRa/preprocessing/Get_All_selected_SVM_features.py'
2023-12-15T05:59:34,781   adding 'HydRa/preprocessing/PPI_feature_generation.py'
2023-12-15T05:59:34,783   adding 'HydRa/preprocessing/__init__.py'
2023-12-15T05:59:34,784   adding 'HydRa/preprocessing/get_SVM_seq_features.py'
2023-12-15T05:59:34,786   adding 'HydRa/preprocessing/predict_SS.py'
2023-12-15T05:59:34,788   adding 'HydRa/preprocessing/Feature_generation/AAC_feature_table_generation.py'
2023-12-15T05:59:34,790   adding 'HydRa/preprocessing/Feature_generation/PPI_feature_generation.py'
2023-12-15T05:59:34,791   adding 'HydRa/preprocessing/Feature_generation/Secondary_structure_prediction.py'
2023-12-15T05:59:34,793   adding 'HydRa/preprocessing/Feature_generation/__init__.py'
2023-12-15T05:59:34,794   adding 'HydRa/preprocessing/Feature_generation/get_PPI_feature_mat_MB_STRING.py'
2023-12-15T05:59:34,796   adding 'HydRa/preprocessing/Feature_generation/kmer_table_generation.py'
2023-12-15T05:59:34,798   adding 'HydRa/preprocessing/Feature_generation/run_get_PPI_feature_mat_MB_STRING_addingOOPSXRNAXlabelsV2.py'
2023-12-15T05:59:34,800   adding 'HydRa/preprocessing/Feature_selection/Feature_selection_for_each_feature_after_chi2Filtering_forFinalTraining.py'
2023-12-15T05:59:34,801   adding 'HydRa/preprocessing/Feature_selection/__init__.py'
2023-12-15T05:59:34,803   adding 'HydRa/training/__init__.py'
2023-12-15T05:59:34,807   adding 'HydRa/training/train_HydRa.py'
2023-12-15T05:59:34,813   adding 'HydRa/training/train_HydRa2_0.py'
2023-12-15T05:59:34,818   adding 'HydRa/training/train_and_evaluate_HydRa.py'
2023-12-15T05:59:34,824   adding 'HydRa/training/train_and_evaluate_HydRa2_0.py'
2023-12-15T05:59:34,829   adding 'HydRa/training/train_and_evaluate_HydRa_bk.py'
2023-12-15T05:59:34,832   adding 'hydra_rbp-0.1.21.32.dist-info/LICENSE'
2023-12-15T05:59:34,834   adding 'hydra_rbp-0.1.21.32.dist-info/METADATA'
2023-12-15T05:59:34,835   adding 'hydra_rbp-0.1.21.32.dist-info/WHEEL'
2023-12-15T05:59:34,836   adding 'hydra_rbp-0.1.21.32.dist-info/entry_points.txt'
2023-12-15T05:59:34,837   adding 'hydra_rbp-0.1.21.32.dist-info/top_level.txt'
2023-12-15T05:59:34,840   adding 'hydra_rbp-0.1.21.32.dist-info/RECORD'
2023-12-15T05:59:34,883   removing build/bdist.linux-armv7l/wheel
2023-12-15T05:59:35,125   Building wheel for hydra-rbp (setup.py): finished with status 'done'
2023-12-15T05:59:36,191   Created wheel for hydra-rbp: filename=hydra_rbp-0.1.21.32-py3-none-any.whl size=53775149 sha256=f2c2dd36cbc56568123d1736387532a1e0cb29727a80e19ec147b7b32891ae63
2023-12-15T05:59:36,192   Stored in directory: /tmp/pip-ephem-wheel-cache-wa7etoee/wheels/c3/85/fa/3a444e694f3a3662a17e8d3d147244d8a58cb97486048113de
2023-12-15T05:59:36,222 Successfully built hydra-rbp
2023-12-15T05:59:37,524 Removed build tracker: '/tmp/pip-build-tracker-uwk61p6q'