2023-12-15T13:27:02,967 Created temporary directory: /tmp/pip-build-tracker-9rryp2nt 2023-12-15T13:27:02,968 Initialized build tracking at /tmp/pip-build-tracker-9rryp2nt 2023-12-15T13:27:02,969 Created build tracker: /tmp/pip-build-tracker-9rryp2nt 2023-12-15T13:27:02,969 Entered build tracker: /tmp/pip-build-tracker-9rryp2nt 2023-12-15T13:27:02,969 Created temporary directory: /tmp/pip-wheel-03orp4el 2023-12-15T13:27:02,974 Created temporary directory: /tmp/pip-ephem-wheel-cache-_1va2pnx 2023-12-15T13:27:03,000 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-15T13:27:03,004 2 location(s) to search for versions of medaka: 2023-12-15T13:27:03,004 * https://pypi.org/simple/medaka/ 2023-12-15T13:27:03,004 * https://www.piwheels.org/simple/medaka/ 2023-12-15T13:27:03,004 Fetching project page and analyzing links: https://pypi.org/simple/medaka/ 2023-12-15T13:27:03,005 Getting page https://pypi.org/simple/medaka/ 2023-12-15T13:27:03,007 Found index url https://pypi.org/simple/ 2023-12-15T13:27:03,061 Fetched page https://pypi.org/simple/medaka/ as application/vnd.pypi.simple.v1+json 2023-12-15T13:27:03,090 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/26/33/e2962890d3b87154f30e038a1128cb5be7260605e64b755125bb7d1ba58a/medaka-0.4.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,090 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b9/0a/66d4188bc68e407da24d42d9b92570816f256448766f724faac275739392/medaka-0.4.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,090 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/60/5e/c39a1cdb311434813c37f51c45cbefdc863493c19d277054a8ef829b0cd8/medaka-0.4.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,091 Link requires a different Python (3.9.2 not in: '>=3.4.*,<3.7'): https://files.pythonhosted.org/packages/4b/7e/6520185af23ac4ec3994b7e24120f6336d0ff1ffd6437c407e0758c713a5/medaka-0.4.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,091 Skipping link: 0.4.1 Requires-Python >=3.4.*,<3.7: https://files.pythonhosted.org/packages/4b/7e/6520185af23ac4ec3994b7e24120f6336d0ff1ffd6437c407e0758c713a5/medaka-0.4.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,091 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/7e/b9/0c784e5b2448c2834ae8ac993ea8ac08b5961770f16887e892a4d00f2155/medaka-0.4.3-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,092 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b6/ed/2ca7a4e82e0e81b7c1c27aaa79f54cccae06c67e7a8a84b634565358ca52/medaka-0.4.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,092 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/70/e9/27de839a071bb272e928277dcc2d386e45649e2e609df5308f679e53470c/medaka-0.4.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,092 Link requires a different Python (3.9.2 not in: '>=3.4.*,<3.7'): https://files.pythonhosted.org/packages/72/11/27adae396526e35ca1ad8af639740e6ca4c096603d7b7319cecffa2c538a/medaka-0.4.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,093 Skipping link: 0.4.3 Requires-Python >=3.4.*,<3.7: https://files.pythonhosted.org/packages/72/11/27adae396526e35ca1ad8af639740e6ca4c096603d7b7319cecffa2c538a/medaka-0.4.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,093 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/df/ea/ca83da715b81858ffeb3d754e78435cfebd48d39534f4849885067ac51eb/medaka-0.5.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,093 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/58/dc/02ffe455cc9fe8e5437f7c14386c798f30774a32b81986d0e08178f2a43b/medaka-0.5.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,093 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/56/96/4b273f88330ee8721c731ebc3784895d5f0be4ec9e62ebc5adbf5acfb26e/medaka-0.5.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,094 Link requires a different Python (3.9.2 not in: '>=3.4.*,<3.7'): https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,094 Skipping link: 0.5.2 Requires-Python >=3.4.*,<3.7: https://files.pythonhosted.org/packages/d9/fe/27c3044e993acd7b9ded240c6c2133743cd35dc8fd5a3a8800eb3e458e62/medaka-0.5.2.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,094 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/64/23/69271ac6524bf460a4d094a824cd175a430e9c0dfc46fde9a9068a8c2a77/medaka-0.6.5-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,094 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/5b/c2/e19edcb88cc0cf75b03caf234cbda1d3b1a7968bdc032897789fe406535b/medaka-0.6.5-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,095 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/c8/58/6432f8e39a523d887650fdcf6229928e28accdac14e0422a5234818fb0a6/medaka-0.6.5.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,095 Skipping link: 0.6.5 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/c8/58/6432f8e39a523d887650fdcf6229928e28accdac14e0422a5234818fb0a6/medaka-0.6.5.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,095 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/7b/d6/33164e62df1f406d6c24b25afa30baf08c31f277bee929eb94ce044a1786/medaka-0.7.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,095 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/05/19/8229d6a9b67fe7c28566602bb5268be0b259f53df76fe8302b2e22e43234/medaka-0.7.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,096 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/36/a8/13e3e9419f67063b24871e88eb6a883388008266b4089f46ab0a4eb25385/medaka-0.7.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,096 Skipping link: 0.7.1 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/36/a8/13e3e9419f67063b24871e88eb6a883388008266b4089f46ab0a4eb25385/medaka-0.7.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,096 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/88/3c/c9f27c7cbcb756432c83a06ad04bb9ecb60d7f71aa030d68b8edf477696b/medaka-0.8.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,096 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/59/bf/ea8a7ebbcab7f63d88b215c68d29d0bb2c693e923408a515d0857010479b/medaka-0.8.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,097 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/24/62/8daba6cbedfecbe239a0eba5a4cb10801fb040ab5ad4e59c8f56cb62fff7/medaka-0.8.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,097 Skipping link: 0.8.1 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/24/62/8daba6cbedfecbe239a0eba5a4cb10801fb040ab5ad4e59c8f56cb62fff7/medaka-0.8.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,097 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/8a/ea/36fb21ee68fdbd5b6b6dcb10acdc264e549f24f5b3744c3e804541721d1e/medaka-0.9.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,098 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/a0/2c/c79769250ccc718928c0585df3684c0a17255c9044a0afe686a2a12309b4/medaka-0.9.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,098 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/b8/4c/d221b7d8f154dd93ab175150726bd3c31aa1fde0766c1644cfc3e8d3a3dd/medaka-0.9.2.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,098 Skipping link: 0.9.2 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/b8/4c/d221b7d8f154dd93ab175150726bd3c31aa1fde0766c1644cfc3e8d3a3dd/medaka-0.9.2.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,098 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/6f/64/4176da2cb99c2fa3c9679e7bd38ea0853a3d46f1c3a9b4d19989fcd03390/medaka-0.10.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,099 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/92/e8/6ccab5ba2e748631419044428ba68a65ebed9f44dceca77d9d38640c3f8b/medaka-0.10.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,099 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/cc/33/3d57405f8fe3e85cec441f4791f5b8307ae4b4d37c17af9404f9190c80ac/medaka-0.10.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,099 Skipping link: 0.10.1 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/cc/33/3d57405f8fe3e85cec441f4791f5b8307ae4b4d37c17af9404f9190c80ac/medaka-0.10.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,100 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/06/2f/be5e4e74de0a0ed815aa62d8836f074b9d41bafd94c2ed84b7f34a85c5e8/medaka-0.11.5-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,100 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/72/bc/296fc293a5fa6b3e2e5c21cde3a9bcaf8afd12511ba83d749f835bae8bfa/medaka-0.11.5-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,100 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/b8/e7/b6451f495fd8c911bf8b9cb46a9aee8a1f1734dec60eea79ecd51cc6de1c/medaka-0.11.5.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,100 Skipping link: 0.11.5 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/b8/e7/b6451f495fd8c911bf8b9cb46a9aee8a1f1734dec60eea79ecd51cc6de1c/medaka-0.11.5.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,101 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/7b/ea/4608c3409e1038723736ab12398bcfe187df7d0c07dfa0e538c54506db8c/medaka-0.12.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,101 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/03/fd/ccb707ecc85cad0c626a2fd0e3a377255b66639a5fae3978421ebf7553fe/medaka-0.12.1-cp36-cp36m-manylinux1_x86_64.whl 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https://files.pythonhosted.org/packages/f4/02/0cda43f4585386c4f9d724623c4aef10ef715835130781cb6f87753e89e9/medaka-1.0.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,102 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.7'): https://files.pythonhosted.org/packages/4b/f7/a2970846fbd59ad860d7a6f9caabaf1df63079d90da94e6912cf0a989e55/medaka-1.0.0.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,103 Skipping link: 1.0.0 Requires-Python >=3.5.*,<3.7: https://files.pythonhosted.org/packages/4b/f7/a2970846fbd59ad860d7a6f9caabaf1df63079d90da94e6912cf0a989e55/medaka-1.0.0.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,103 Skipping link: No binaries permitted for medaka: 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https://files.pythonhosted.org/packages/02/95/fb656e275c8ea5fe0ae3b04d76553ad774ef6a406a7c356b0a41d8ee9ba4/medaka-1.0.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.7) 2023-12-15T13:27:03,104 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/f1/4c/a1d186db42d33d1b6e5a4e7261629fcbee4b7279e341822e08f7807dbe43/medaka-1.1.3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,104 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/da/5e/27233fbfc55579f076cd6e4aaefd8a69ee93f0fb5707ef5cfc28f0f93bf7/medaka-1.1.3-cp35-cp35m-manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,104 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/e5/8b/65b897117587b113c5246281f51e03ec436fc20141ef1a946af312a8de94/medaka-1.1.3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,105 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/38/33/05a552e71528ac22734dbea9f86f161605870c6d517c4f2b0982aaa3a073/medaka-1.1.3-cp36-cp36m-manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,105 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/06/6e/6f8078d3492c5da24f6a2146c940a172247ee98a02ef49b83123a3a8433c/medaka-1.1.3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,105 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/71/fd/e713acae09e3f6fc17f81f0343e1053e69dac04788924950612aab6c881f/medaka-1.1.3-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,106 Link requires a different Python (3.9.2 not in: '>=3.5.*,<3.9'): https://files.pythonhosted.org/packages/20/fe/1f035f872461d1b004a03100a1c6954500819ca277ce9f7ee546e1529c5f/medaka-1.1.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,106 Skipping link: 1.1.3 Requires-Python >=3.5.*,<3.9: https://files.pythonhosted.org/packages/20/fe/1f035f872461d1b004a03100a1c6954500819ca277ce9f7ee546e1529c5f/medaka-1.1.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.5.*,<3.9) 2023-12-15T13:27:03,106 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/a6/20/ca7844e0a1e64164cca79455a59f59c5b1d4993281837f442116f7ce0feb/medaka-1.2.6-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,106 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/c3/22/dda93728bb2dddd8373211f69baffdaa9347b5b5f3986eef8c979851224b/medaka-1.2.6-cp36-cp36m-manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,106 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/84/c1/60c1b5b2775d9f85d053dcae7351a0be911b35972c5320c940cc0e3ceb4d/medaka-1.2.6-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,107 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/46/b2/3e679984382f860a75044bf0eaf22e40bca5ab95720c0c2a9f58beab4e73/medaka-1.2.6-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,107 Link requires a different Python (3.9.2 not in: '>3.5.*,<3.9'): https://files.pythonhosted.org/packages/c2/e2/6d6f415ee0a88b72e9168257d763878ff1af018d4eb42ebcfe02a12228fa/medaka-1.2.6.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,107 Skipping link: 1.2.6 Requires-Python >3.5.*,<3.9: https://files.pythonhosted.org/packages/c2/e2/6d6f415ee0a88b72e9168257d763878ff1af018d4eb42ebcfe02a12228fa/medaka-1.2.6.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,108 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/a4/4d/03e90a2f068f014bc7db9a1b477a444e91524f38d876848589d6a222b753/medaka-1.3.4-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,108 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/38/a6/d965ed076504a3b5144dd231673f81328c1815d48bb099ba706e6b05bd1b/medaka-1.3.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,108 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/6d/db/6cdb001e0d735a8cbce662d7f8664cb6e60a2d2ad90a28d5022e3cb835a3/medaka-1.3.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,108 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/5a/00/b503e07056680a3cbfcb6c2815648b21dd176a05482a7ffb8d1f09b83654/medaka-1.3.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,109 Link requires a different Python (3.9.2 not in: '>3.5.*,<3.9'): https://files.pythonhosted.org/packages/89/f6/78ce18232e0711cc4200cdd1dc446ff8dc3ca19885effb1b1f074f74aef1/medaka-1.3.4.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,109 Skipping link: 1.3.4 Requires-Python >3.5.*,<3.9: https://files.pythonhosted.org/packages/89/f6/78ce18232e0711cc4200cdd1dc446ff8dc3ca19885effb1b1f074f74aef1/medaka-1.3.4.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,109 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/bd/ce/4c8d080ac037b5841c7923b51f22fbbcfdb5df5268515e4e605a5978fc99/medaka-1.4.4-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,109 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/54/29/5c166236b24843cad2f9ee95c6a7efb62638e3d500c59ebe209145cff5ef/medaka-1.4.4-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,110 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/db/b2/211f7f8583edec267bb0a4381566aa12c4a5c23765360b3994f548094e9c/medaka-1.4.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,110 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/1f/de/56c8e89f26ce0f16b0078522ffd91cdd8150890177f19ec5c094ca6b0cee/medaka-1.4.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,110 Link requires a different Python (3.9.2 not in: '>3.5.*,<3.9'): https://files.pythonhosted.org/packages/67/57/1c537031ed675da43b766c7806da1eb52c71cb70f33913838bdc13e76373/medaka-1.4.4.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,111 Skipping link: 1.4.4 Requires-Python >3.5.*,<3.9: https://files.pythonhosted.org/packages/67/57/1c537031ed675da43b766c7806da1eb52c71cb70f33913838bdc13e76373/medaka-1.4.4.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.9) 2023-12-15T13:27:03,111 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/49/e0/88379cb32d1a5366ea41e2b709659fd0935c6ff87acc70d35ff6dc5eb612/medaka-1.5.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,111 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/4b/06/b4c28d32b2d851159184361c1975f9508af15c8cd8231d59654b4be4a8ad/medaka-1.5.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,111 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/96/8a/588369c655c247431f22f92f1713f11b9ea6632fc2ec20adbb6d57e7cb17/medaka-1.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,111 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/3e/ef/e3b001006d712876e10f14761f2acdb9f448bc541d1567f2cd1f3413b506/medaka-1.5.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,112 Found link https://files.pythonhosted.org/packages/9f/2e/7ff691c9d06f6a5ab9107b260492a2be0ac19362ceb5ffb9a4f2cf4159cd/medaka-1.5.0.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10), version: 1.5.0 2023-12-15T13:27:03,112 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/ed/2a/a618b5de0b5b6f66bf8fa244708841d81c0a4f4c6a86fd44808dd445342e/medaka-1.6.1-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,112 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/db/44/121a3fba6d49d40e3b00d23a608b7aba2173bfa302baf37218122036d2cf/medaka-1.6.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,113 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b9/b8/b0a31385c3c2f0721be06524dbf1f906b748f70266dae125ff867623e015/medaka-1.6.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,113 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/61/52/8d8cdd5eb9f46dab57e28abb56afd43158176ea332117efbf0a2bc4212a7/medaka-1.6.1-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,113 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/5e/c1/1327fac73b2ad7c5b26f23cb2cd664cf1a3bdf91c68dcaa49d5b2c72ebce/medaka-1.6.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,113 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b1/0a/e5bae5c4c2aa7c7eb0eb0896c9b73518da401deae4d87b367913596ebbfe/medaka-1.6.1-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10) 2023-12-15T13:27:03,114 Found link https://files.pythonhosted.org/packages/74/e9/8524bf38db98964c63ca6591e50f9ac3026e7571a473347549538df59503/medaka-1.6.1.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>3.5.*,<3.10), version: 1.6.1 2023-12-15T13:27:03,114 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/1f/42/e5968b6f030810e417965ec9d469b6caf8fa92b75b65cd7af273840eb031/medaka-1.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,114 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b5/74/7681cb5792a97be9a5d48f4e1bf03712f90f76424981421c40404d6e5bf5/medaka-1.7.3-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/a3/32/a86a0acc752b6fc169ea8c891b62c4bd57b95ed0cbda38454528e736f664/medaka-1.7.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/45/70/36efa9014d62a60e15b17d29a88763278c871e3541b874cecb49811624a8/medaka-1.7.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/8d/37/cc7a16dfa9a6781a6da7a6a4cc527175d24f9b9eaffb958208cea2b78d58/medaka-1.7.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/91/73/c2499e5d3908e5b48c97e1043634a1a9b8294fa3ae2ea40b2c33d22a654f/medaka-1.7.3-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/07/2f/760bde1dbab3a30bb2e92c78b4ff23ccd74ba06e2922c3d1982e2b2a684b/medaka-1.7.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,115 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/f5/80/f7f8f15921cbc12fc2603dd5def44d787f9806ebfeb00543ec913e1f7fd1/medaka-1.7.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,116 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/5c/45/92164f007fe10d8afe472519e19d65e1a9f8d9293c284c95f8f8181c9a11/medaka-1.7.3-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,116 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/99/a6/8fc203ae0dced9f46ac9a96a5d2cc38735c1c167a0ae4bcd8db0ad4aa57c/medaka-1.7.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,116 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/86/93/23ebf7029a042370b27de13a47017dfeb8852050c3d7225679ad7b218ad4/medaka-1.7.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,116 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/e0/73/9a8b135ec750a6afecd1608f1e54cc63b2a17e21c6e57b44792d5b9b4251/medaka-1.7.3-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.7,<3.11) 2023-12-15T13:27:03,117 Found link 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https://files.pythonhosted.org/packages/f9/eb/93a2783707dc97561ba8b148f3e76cc97011f10cb9a1ccd3b12137d27b3d/medaka-1.11.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,130 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/d4/72/ba617ea6c47885a55d413dd12295cb4636cdd8ca114f494976a27947d24a/medaka-1.11.2-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,130 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/a8/a0/74ad66cd8bff436962b87f1128162c56abccdacfe2245407e5f1e3711d95/medaka-1.11.2-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,130 Skipping link: No binaries permitted for medaka: 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https://files.pythonhosted.org/packages/0d/d1/15885121431c2c27623013980aac3948c7754c5cbaf93530c92fa9790937/medaka-1.11.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,131 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/25/09/df65af4fccbffb02b12d9e8e9d71211d0db46d5b3ba3247654db7ebb96fc/medaka-1.11.3-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,131 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/5a/8b/33f6e3ae929d2fffdd57373644669c68eed745db72435d8c40abbe9ebd65/medaka-1.11.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,132 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/8b/89/b94820db6a8a23f7238d89b731c04caaae9594281c99c40cc4ad9eb028f7/medaka-1.11.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,132 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/37/ef/525f4b8d54ed375f29a7d6c920eeaafe2f4feb31e45dd7562f925ddc3e53/medaka-1.11.3-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,132 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/82/d2/b7b29c07f6efd6ae5cbb97a308349ac80044a5d80fc643aca5081866377f/medaka-1.11.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,132 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/46/b1/a37b6a013647ab15ec1e9a11efdc5abb2abdee04843e7f8eaec8819eca69/medaka-1.11.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,132 Skipping link: No binaries permitted for medaka: https://files.pythonhosted.org/packages/b6/58/f78f47a1164bfb0dcc520aeb7bdfe8a8a5d49ffb1061009081a5c5f18b16/medaka-1.11.3-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11) 2023-12-15T13:27:03,133 Found link https://files.pythonhosted.org/packages/a7/ff/9a74fb1de2328211fe6ee11e37481c9fe6ed86355c42943e750b4ca3615d/medaka-1.11.3.tar.gz (from https://pypi.org/simple/medaka/) (requires-python:>=3.8,<3.11), version: 1.11.3 2023-12-15T13:27:03,133 Fetching project page and analyzing links: https://www.piwheels.org/simple/medaka/ 2023-12-15T13:27:03,134 Getting page https://www.piwheels.org/simple/medaka/ 2023-12-15T13:27:03,135 Found index url https://www.piwheels.org/simple/ 2023-12-15T13:27:03,199 Fetched page https://www.piwheels.org/simple/medaka/ as text/html 2023-12-15T13:27:03,201 Skipping link: No binaries permitted for medaka: https://www.piwheels.org/simple/medaka/medaka-0.5.2-py3-none-any.whl#sha256=bcc67dd6d4f32f924176f3799b90b95cb3c17fb677ca138a2c181ca40f1925a2 (from https://www.piwheels.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,201 Skipping link: No binaries permitted for medaka: https://www.piwheels.org/simple/medaka/medaka-0.4.3-py3-none-any.whl#sha256=68768ed4c7148853a1359ed2ccf07b668200347e1c7c8c68c28f15b3e79e7db0 (from https://www.piwheels.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,202 Skipping link: No binaries permitted for medaka: https://www.piwheels.org/simple/medaka/medaka-0.4.1-py3-none-any.whl#sha256=88c925ccbf18942ca9bd2d175e23454f1e762aca079619e4bba09b78c4992018 (from https://www.piwheels.org/simple/medaka/) (requires-python:>=3.4.*,<3.7) 2023-12-15T13:27:03,202 Skipping link: not a file: https://www.piwheels.org/simple/medaka/ 2023-12-15T13:27:03,202 Skipping link: not a file: https://pypi.org/simple/medaka/ 2023-12-15T13:27:03,221 Given no hashes to check 1 links for project 'medaka': discarding no candidates 2023-12-15T13:27:03,237 Collecting medaka==1.11.3 2023-12-15T13:27:03,239 Created temporary directory: /tmp/pip-unpack-z8aryiej 2023-12-15T13:27:03,367 Downloading medaka-1.11.3.tar.gz (16.8 MB) 2023-12-15T13:27:07,566 Added medaka==1.11.3 from https://files.pythonhosted.org/packages/a7/ff/9a74fb1de2328211fe6ee11e37481c9fe6ed86355c42943e750b4ca3615d/medaka-1.11.3.tar.gz to build tracker '/tmp/pip-build-tracker-9rryp2nt' 2023-12-15T13:27:07,571 Created temporary directory: /tmp/pip-build-env-9r6iy0d_ 2023-12-15T13:27:07,581 Installing build dependencies: started 2023-12-15T13:27:07,582 Running command pip subprocess to install build dependencies 2023-12-15T13:27:08,732 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2023-12-15T13:27:09,282 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-15T13:27:10,695 Collecting setuptools 2023-12-15T13:27:10,712 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB) 2023-12-15T13:27:10,961 Collecting wheel 2023-12-15T13:27:10,977 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2023-12-15T13:27:11,632 Collecting cffi==1.15.0 2023-12-15T13:27:11,655 Using cached https://www.piwheels.org/simple/cffi/cffi-1.15.0-cp39-cp39-linux_armv7l.whl (369 kB) 2023-12-15T13:27:11,770 Collecting pycparser (from cffi==1.15.0) 2023-12-15T13:27:11,787 Using cached https://www.piwheels.org/simple/pycparser/pycparser-2.21-py2.py3-none-any.whl (119 kB) 2023-12-15T13:27:13,558 Installing collected packages: wheel, setuptools, pycparser, cffi 2023-12-15T13:27:13,784 Creating /tmp/pip-build-env-9r6iy0d_/overlay/bin 2023-12-15T13:27:13,786 changing mode of /tmp/pip-build-env-9r6iy0d_/overlay/bin/wheel to 755 2023-12-15T13:27:16,682 Successfully installed cffi-1.15.0 pycparser-2.21 setuptools-69.0.2 wheel-0.42.0 2023-12-15T13:27:17,174 Installing build dependencies: finished with status 'done' 2023-12-15T13:27:17,189 Getting requirements to build wheel: started 2023-12-15T13:27:17,190 Running command Getting requirements to build wheel 2023-12-15T13:27:17,785 Cannot import pyabpoa, some features may not be available. 2023-12-15T13:27:17,785 Cannot import wurlitzer, some features may not be available. 2023-12-15T13:27:17,967 /tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing. 2023-12-15T13:27:17,968 warnings.warn("String literal found in cdef() or type source. " 2023-12-15T13:27:18,115 Bundling models: ['r103_fast_g507', 'r103_fast_snp_g507', 'r103_fast_variant_g507', 'r103_hac_g507', 'r103_hac_snp_g507', 'r103_hac_variant_g507', 'r103_min_high_g345', 'r103_min_high_g360', 'r103_prom_high_g360', 'r103_prom_snp_g3210', 'r103_prom_variant_g3210', 'r103_sup_g507', 'r103_sup_snp_g507', 'r103_sup_variant_g507', 'r1041_e82_260bps_fast_g632', 'r1041_e82_260bps_fast_variant_g632', 'r1041_e82_260bps_hac_g632', 'r1041_e82_260bps_hac_v4.0.0', 'r1041_e82_260bps_hac_v4.1.0', 'r1041_e82_260bps_hac_variant_g632', 'r1041_e82_260bps_hac_variant_v4.1.0', 'r1041_e82_260bps_sup_g632', 'r1041_e82_260bps_sup_v4.0.0', 'r1041_e82_260bps_sup_v4.1.0', 'r1041_e82_260bps_sup_variant_g632', 'r1041_e82_260bps_sup_variant_v4.1.0', 'r1041_e82_400bps_fast_g615', 'r1041_e82_400bps_fast_g632', 'r1041_e82_400bps_fast_variant_g615', 'r1041_e82_400bps_fast_variant_g632', 'r1041_e82_400bps_hac_g615', 'r1041_e82_400bps_hac_g632', 'r1041_e82_400bps_hac_v4.0.0', 'r1041_e82_400bps_hac_v4.1.0', 'r1041_e82_400bps_hac_v4.2.0', 'r1041_e82_400bps_hac_v4.3.0', 'r1041_e82_400bps_hac_variant_g615', 'r1041_e82_400bps_hac_variant_g632', 'r1041_e82_400bps_hac_variant_v4.1.0', 'r1041_e82_400bps_hac_variant_v4.2.0', 'r1041_e82_400bps_hac_variant_v4.3.0', 'r1041_e82_400bps_sup_g615', 'r1041_e82_400bps_sup_v4.0.0', 'r1041_e82_400bps_sup_v4.1.0', 'r1041_e82_400bps_sup_v4.2.0', 'r1041_e82_400bps_sup_v4.3.0', 'r1041_e82_400bps_sup_variant_g615', 'r1041_e82_400bps_sup_variant_v4.1.0', 'r1041_e82_400bps_sup_variant_v4.2.0', 'r1041_e82_400bps_sup_variant_v4.3.0', 'r104_e81_fast_g5015', 'r104_e81_fast_variant_g5015', 'r104_e81_hac_g5015', 'r104_e81_hac_variant_g5015', 'r104_e81_sup_g5015', 'r104_e81_sup_g610', 'r104_e81_sup_variant_g610', 'r10_min_high_g303', 'r10_min_high_g340', 'r941_e81_fast_g514', 'r941_e81_fast_variant_g514', 'r941_e81_hac_g514', 'r941_e81_hac_variant_g514', 'r941_e81_sup_g514', 'r941_e81_sup_variant_g514', 'r941_min_fast_g303', 'r941_min_fast_g507', 'r941_min_fast_snp_g507', 'r941_min_fast_variant_g507', 'r941_min_hac_g507', 'r941_min_hac_snp_g507', 'r941_min_hac_variant_g507', 'r941_min_high_g303', 'r941_min_high_g330', 'r941_min_high_g340_rle', 'r941_min_high_g344', 'r941_min_high_g351', 'r941_min_high_g360', 'r941_min_sup_g507', 'r941_min_sup_snp_g507', 'r941_min_sup_variant_g507', 'r941_prom_fast_g303', 'r941_prom_fast_g507', 'r941_prom_fast_snp_g507', 'r941_prom_fast_variant_g507', 'r941_prom_hac_g507', 'r941_prom_hac_snp_g507', 'r941_prom_hac_variant_g507', 'r941_prom_high_g303', 'r941_prom_high_g330', 'r941_prom_high_g344', 'r941_prom_high_g360', 'r941_prom_high_g4011', 'r941_prom_snp_g303', 'r941_prom_snp_g322', 'r941_prom_snp_g360', 'r941_prom_sup_g507', 'r941_prom_sup_snp_g507', 'r941_prom_sup_variant_g507', 'r941_prom_variant_g303', 'r941_prom_variant_g322', 'r941_prom_variant_g360', 'r941_sup_plant_g610', 'r941_sup_plant_variant_g610'] 2023-12-15T13:27:18,115 running egg_info 2023-12-15T13:27:18,121 writing medaka.egg-info/PKG-INFO 2023-12-15T13:27:18,125 writing dependency_links to medaka.egg-info/dependency_links.txt 2023-12-15T13:27:18,127 writing entry points to medaka.egg-info/entry_points.txt 2023-12-15T13:27:18,128 writing requirements to medaka.egg-info/requires.txt 2023-12-15T13:27:18,129 writing top-level names to medaka.egg-info/top_level.txt 2023-12-15T13:27:18,180 reading manifest file 'medaka.egg-info/SOURCES.txt' 2023-12-15T13:27:18,241 reading manifest template 'MANIFEST.in' 2023-12-15T13:27:18,274 no previously-included directories found matching 'submodules/samtools-*/htslib-*/test' 2023-12-15T13:27:18,276 no previously-included directories found matching 'build' 2023-12-15T13:27:18,277 no previously-included directories found matching 'docs' 2023-12-15T13:27:18,277 adding license file 'LICENSE.md' 2023-12-15T13:27:18,302 writing manifest file 'medaka.egg-info/SOURCES.txt' 2023-12-15T13:27:18,394 Getting requirements to build wheel: finished with status 'done' 2023-12-15T13:27:18,403 Created temporary directory: /tmp/pip-modern-metadata-xfzd1j6c 2023-12-15T13:27:18,405 Preparing metadata (pyproject.toml): started 2023-12-15T13:27:18,406 Running command Preparing metadata (pyproject.toml) 2023-12-15T13:27:18,958 Cannot import pyabpoa, some features may not be available. 2023-12-15T13:27:18,959 Cannot import wurlitzer, some features may not be available. 2023-12-15T13:27:19,055 /tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing. 2023-12-15T13:27:19,056 warnings.warn("String literal found in cdef() or type source. " 2023-12-15T13:27:19,191 Bundling models: ['r103_fast_g507', 'r103_fast_snp_g507', 'r103_fast_variant_g507', 'r103_hac_g507', 'r103_hac_snp_g507', 'r103_hac_variant_g507', 'r103_min_high_g345', 'r103_min_high_g360', 'r103_prom_high_g360', 'r103_prom_snp_g3210', 'r103_prom_variant_g3210', 'r103_sup_g507', 'r103_sup_snp_g507', 'r103_sup_variant_g507', 'r1041_e82_260bps_fast_g632', 'r1041_e82_260bps_fast_variant_g632', 'r1041_e82_260bps_hac_g632', 'r1041_e82_260bps_hac_v4.0.0', 'r1041_e82_260bps_hac_v4.1.0', 'r1041_e82_260bps_hac_variant_g632', 'r1041_e82_260bps_hac_variant_v4.1.0', 'r1041_e82_260bps_sup_g632', 'r1041_e82_260bps_sup_v4.0.0', 'r1041_e82_260bps_sup_v4.1.0', 'r1041_e82_260bps_sup_variant_g632', 'r1041_e82_260bps_sup_variant_v4.1.0', 'r1041_e82_400bps_fast_g615', 'r1041_e82_400bps_fast_g632', 'r1041_e82_400bps_fast_variant_g615', 'r1041_e82_400bps_fast_variant_g632', 'r1041_e82_400bps_hac_g615', 'r1041_e82_400bps_hac_g632', 'r1041_e82_400bps_hac_v4.0.0', 'r1041_e82_400bps_hac_v4.1.0', 'r1041_e82_400bps_hac_v4.2.0', 'r1041_e82_400bps_hac_v4.3.0', 'r1041_e82_400bps_hac_variant_g615', 'r1041_e82_400bps_hac_variant_g632', 'r1041_e82_400bps_hac_variant_v4.1.0', 'r1041_e82_400bps_hac_variant_v4.2.0', 'r1041_e82_400bps_hac_variant_v4.3.0', 'r1041_e82_400bps_sup_g615', 'r1041_e82_400bps_sup_v4.0.0', 'r1041_e82_400bps_sup_v4.1.0', 'r1041_e82_400bps_sup_v4.2.0', 'r1041_e82_400bps_sup_v4.3.0', 'r1041_e82_400bps_sup_variant_g615', 'r1041_e82_400bps_sup_variant_v4.1.0', 'r1041_e82_400bps_sup_variant_v4.2.0', 'r1041_e82_400bps_sup_variant_v4.3.0', 'r104_e81_fast_g5015', 'r104_e81_fast_variant_g5015', 'r104_e81_hac_g5015', 'r104_e81_hac_variant_g5015', 'r104_e81_sup_g5015', 'r104_e81_sup_g610', 'r104_e81_sup_variant_g610', 'r10_min_high_g303', 'r10_min_high_g340', 'r941_e81_fast_g514', 'r941_e81_fast_variant_g514', 'r941_e81_hac_g514', 'r941_e81_hac_variant_g514', 'r941_e81_sup_g514', 'r941_e81_sup_variant_g514', 'r941_min_fast_g303', 'r941_min_fast_g507', 'r941_min_fast_snp_g507', 'r941_min_fast_variant_g507', 'r941_min_hac_g507', 'r941_min_hac_snp_g507', 'r941_min_hac_variant_g507', 'r941_min_high_g303', 'r941_min_high_g330', 'r941_min_high_g340_rle', 'r941_min_high_g344', 'r941_min_high_g351', 'r941_min_high_g360', 'r941_min_sup_g507', 'r941_min_sup_snp_g507', 'r941_min_sup_variant_g507', 'r941_prom_fast_g303', 'r941_prom_fast_g507', 'r941_prom_fast_snp_g507', 'r941_prom_fast_variant_g507', 'r941_prom_hac_g507', 'r941_prom_hac_snp_g507', 'r941_prom_hac_variant_g507', 'r941_prom_high_g303', 'r941_prom_high_g330', 'r941_prom_high_g344', 'r941_prom_high_g360', 'r941_prom_high_g4011', 'r941_prom_snp_g303', 'r941_prom_snp_g322', 'r941_prom_snp_g360', 'r941_prom_sup_g507', 'r941_prom_sup_snp_g507', 'r941_prom_sup_variant_g507', 'r941_prom_variant_g303', 'r941_prom_variant_g322', 'r941_prom_variant_g360', 'r941_sup_plant_g610', 'r941_sup_plant_variant_g610'] 2023-12-15T13:27:19,191 running dist_info 2023-12-15T13:27:19,211 creating /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info 2023-12-15T13:27:19,217 writing /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/PKG-INFO 2023-12-15T13:27:19,221 writing dependency_links to /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/dependency_links.txt 2023-12-15T13:27:19,223 writing entry points to /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/entry_points.txt 2023-12-15T13:27:19,225 writing requirements to /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/requires.txt 2023-12-15T13:27:19,226 writing top-level names to /tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/top_level.txt 2023-12-15T13:27:19,227 writing manifest file '/tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/SOURCES.txt' 2023-12-15T13:27:19,260 reading manifest file '/tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/SOURCES.txt' 2023-12-15T13:27:19,262 reading manifest template 'MANIFEST.in' 2023-12-15T13:27:19,286 no previously-included directories found matching 'submodules/samtools-*/htslib-*/test' 2023-12-15T13:27:19,287 no previously-included directories found matching 'build' 2023-12-15T13:27:19,288 no previously-included directories found matching 'docs' 2023-12-15T13:27:19,288 adding license file 'LICENSE.md' 2023-12-15T13:27:19,306 writing manifest file '/tmp/pip-modern-metadata-xfzd1j6c/medaka.egg-info/SOURCES.txt' 2023-12-15T13:27:19,307 creating '/tmp/pip-modern-metadata-xfzd1j6c/medaka-1.11.3.dist-info' 2023-12-15T13:27:19,513 Preparing metadata (pyproject.toml): finished with status 'done' 2023-12-15T13:27:19,520 Source in /tmp/pip-wheel-03orp4el/medaka_e41b060e28bb4cb99cf9ab3d1688817d has version 1.11.3, which satisfies requirement medaka==1.11.3 from https://files.pythonhosted.org/packages/a7/ff/9a74fb1de2328211fe6ee11e37481c9fe6ed86355c42943e750b4ca3615d/medaka-1.11.3.tar.gz 2023-12-15T13:27:19,521 Removed medaka==1.11.3 from https://files.pythonhosted.org/packages/a7/ff/9a74fb1de2328211fe6ee11e37481c9fe6ed86355c42943e750b4ca3615d/medaka-1.11.3.tar.gz from build tracker '/tmp/pip-build-tracker-9rryp2nt' 2023-12-15T13:27:19,528 Created temporary directory: /tmp/pip-unpack-mmw09zno 2023-12-15T13:27:19,529 Created temporary directory: /tmp/pip-unpack-dbj15ecr 2023-12-15T13:27:19,547 Building wheels for collected packages: medaka 2023-12-15T13:27:19,551 Created temporary directory: /tmp/pip-wheel-nxto39rp 2023-12-15T13:27:19,551 Destination directory: /tmp/pip-wheel-nxto39rp 2023-12-15T13:27:19,553 Building wheel for medaka (pyproject.toml): started 2023-12-15T13:27:19,554 Running command Building wheel for medaka (pyproject.toml) 2023-12-15T13:27:20,091 Cannot import pyabpoa, some features may not be available. 2023-12-15T13:27:20,092 Cannot import wurlitzer, some features may not be available. 2023-12-15T13:27:20,186 /tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/cffi/cparser.py:154: UserWarning: String literal found in cdef() or type source. String literals are ignored here, but you should remove them anyway because some character sequences confuse pre-parsing. 2023-12-15T13:27:20,186 warnings.warn("String literal found in cdef() or type source. " 2023-12-15T13:27:20,377 Bundling models: ['r103_fast_g507', 'r103_fast_snp_g507', 'r103_fast_variant_g507', 'r103_hac_g507', 'r103_hac_snp_g507', 'r103_hac_variant_g507', 'r103_min_high_g345', 'r103_min_high_g360', 'r103_prom_high_g360', 'r103_prom_snp_g3210', 'r103_prom_variant_g3210', 'r103_sup_g507', 'r103_sup_snp_g507', 'r103_sup_variant_g507', 'r1041_e82_260bps_fast_g632', 'r1041_e82_260bps_fast_variant_g632', 'r1041_e82_260bps_hac_g632', 'r1041_e82_260bps_hac_v4.0.0', 'r1041_e82_260bps_hac_v4.1.0', 'r1041_e82_260bps_hac_variant_g632', 'r1041_e82_260bps_hac_variant_v4.1.0', 'r1041_e82_260bps_sup_g632', 'r1041_e82_260bps_sup_v4.0.0', 'r1041_e82_260bps_sup_v4.1.0', 'r1041_e82_260bps_sup_variant_g632', 'r1041_e82_260bps_sup_variant_v4.1.0', 'r1041_e82_400bps_fast_g615', 'r1041_e82_400bps_fast_g632', 'r1041_e82_400bps_fast_variant_g615', 'r1041_e82_400bps_fast_variant_g632', 'r1041_e82_400bps_hac_g615', 'r1041_e82_400bps_hac_g632', 'r1041_e82_400bps_hac_v4.0.0', 'r1041_e82_400bps_hac_v4.1.0', 'r1041_e82_400bps_hac_v4.2.0', 'r1041_e82_400bps_hac_v4.3.0', 'r1041_e82_400bps_hac_variant_g615', 'r1041_e82_400bps_hac_variant_g632', 'r1041_e82_400bps_hac_variant_v4.1.0', 'r1041_e82_400bps_hac_variant_v4.2.0', 'r1041_e82_400bps_hac_variant_v4.3.0', 'r1041_e82_400bps_sup_g615', 'r1041_e82_400bps_sup_v4.0.0', 'r1041_e82_400bps_sup_v4.1.0', 'r1041_e82_400bps_sup_v4.2.0', 'r1041_e82_400bps_sup_v4.3.0', 'r1041_e82_400bps_sup_variant_g615', 'r1041_e82_400bps_sup_variant_v4.1.0', 'r1041_e82_400bps_sup_variant_v4.2.0', 'r1041_e82_400bps_sup_variant_v4.3.0', 'r104_e81_fast_g5015', 'r104_e81_fast_variant_g5015', 'r104_e81_hac_g5015', 'r104_e81_hac_variant_g5015', 'r104_e81_sup_g5015', 'r104_e81_sup_g610', 'r104_e81_sup_variant_g610', 'r10_min_high_g303', 'r10_min_high_g340', 'r941_e81_fast_g514', 'r941_e81_fast_variant_g514', 'r941_e81_hac_g514', 'r941_e81_hac_variant_g514', 'r941_e81_sup_g514', 'r941_e81_sup_variant_g514', 'r941_min_fast_g303', 'r941_min_fast_g507', 'r941_min_fast_snp_g507', 'r941_min_fast_variant_g507', 'r941_min_hac_g507', 'r941_min_hac_snp_g507', 'r941_min_hac_variant_g507', 'r941_min_high_g303', 'r941_min_high_g330', 'r941_min_high_g340_rle', 'r941_min_high_g344', 'r941_min_high_g351', 'r941_min_high_g360', 'r941_min_sup_g507', 'r941_min_sup_snp_g507', 'r941_min_sup_variant_g507', 'r941_prom_fast_g303', 'r941_prom_fast_g507', 'r941_prom_fast_snp_g507', 'r941_prom_fast_variant_g507', 'r941_prom_hac_g507', 'r941_prom_hac_snp_g507', 'r941_prom_hac_variant_g507', 'r941_prom_high_g303', 'r941_prom_high_g330', 'r941_prom_high_g344', 'r941_prom_high_g360', 'r941_prom_high_g4011', 'r941_prom_snp_g303', 'r941_prom_snp_g322', 'r941_prom_snp_g360', 'r941_prom_sup_g507', 'r941_prom_sup_snp_g507', 'r941_prom_sup_variant_g507', 'r941_prom_variant_g303', 'r941_prom_variant_g322', 'r941_prom_variant_g360', 'r941_sup_plant_g610', 'r941_sup_plant_variant_g610'] 2023-12-15T13:27:20,377 running bdist_wheel 2023-12-15T13:27:20,413 running build 2023-12-15T13:27:20,413 running build_py 2023-12-15T13:27:20,422 creating build 2023-12-15T13:27:20,423 creating build/lib.linux-armv7l-cpython-39 2023-12-15T13:27:20,423 creating build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,425 copying medaka/rle.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,427 copying medaka/wrappers.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,429 copying medaka/medaka_counts.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,430 copying medaka/align.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,432 copying medaka/medaka.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,435 copying medaka/common.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,437 copying medaka/models.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,439 copying medaka/training.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,442 copying medaka/__init__.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,443 copying medaka/smolecule.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,445 copying medaka/datastore.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,448 copying medaka/variant.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,450 copying medaka/features.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,452 copying medaka/options.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,454 copying medaka/stitch.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,457 copying medaka/tandem.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,459 copying medaka/vcf.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,462 copying medaka/keras_ext.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,465 copying medaka/prediction.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,467 copying medaka/executor.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,468 copying medaka/labels.py -> build/lib.linux-armv7l-cpython-39/medaka 2023-12-15T13:27:20,476 creating build/lib.linux-armv7l-cpython-39/medaka/data 2023-12-15T13:27:20,477 copying medaka/data/r1041_e82_400bps_hac_v4.3.0_model.tar.gz -> build/lib.linux-armv7l-cpython-39/medaka/data 2023-12-15T13:27:20,534 copying medaka/data/r1041_e82_400bps_hac_variant_v4.3.0_model.tar.gz -> build/lib.linux-armv7l-cpython-39/medaka/data 2023-12-15T13:27:20,611 copying medaka/data/r1041_e82_400bps_sup_v4.3.0_model.tar.gz -> build/lib.linux-armv7l-cpython-39/medaka/data 2023-12-15T13:27:20,669 copying medaka/data/r1041_e82_400bps_sup_variant_v4.3.0_model.tar.gz -> build/lib.linux-armv7l-cpython-39/medaka/data 2023-12-15T13:27:20,722 running build_ext 2023-12-15T13:27:20,722 generating cffi module 'build/temp.linux-armv7l-cpython-39/libmedaka.c' 2023-12-15T13:27:20,723 creating build/temp.linux-armv7l-cpython-39 2023-12-15T13:27:20,741 Compiling htslib using Makefile 2023-12-15T13:27:20,885 cd submodules; \ 2023-12-15T13:27:20,886 curl -L -o samtools-1.14.tar.bz2 https://github.com/samtools/samtools/releases/download/1.14/samtools-1.14.tar.bz2; \ 2023-12-15T13:27:20,886 tar -xjf samtools-1.14.tar.bz2; \ 2023-12-15T13:27:20,886 rm samtools-1.14.tar.bz2 2023-12-15T13:27:20,933 % Total % Received % Xferd Average Speed Time Time Time Current 2023-12-15T13:27:20,933 Dload Upload Total Spent Left Speed 2023-12-15T13:27:21,210 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2023-12-15T13:27:21,210 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2023-12-15T13:27:21,663 100 7563k 100 7563k 0 0 10.3M 0 --:--:-- --:--:-- --:--:-- 10.3M 2023-12-15T13:27:26,891 # this is required only to add in -fpic so we can build python module 2023-12-15T13:27:26,895 \x1b[1;33mMaking libhts.a\x1b[0m 2023-12-15T13:27:26,895 cd submodules/samtools-1.14/htslib-1.14/ \ 2023-12-15T13:27:26,896 && CFLAGS="-fpic -O3 -std=c99 -mtune=haswell" ./configure \ 2023-12-15T13:27:26,896 && make -j 4 2023-12-15T13:27:27,233 checking for gcc... gcc 2023-12-15T13:27:27,420 checking whether the C compiler works... no 2023-12-15T13:27:27,429 configure: error: in `/tmp/pip-wheel-03orp4el/medaka_e41b060e28bb4cb99cf9ab3d1688817d/submodules/samtools-1.14/htslib-1.14': 2023-12-15T13:27:27,430 configure: error: C compiler cannot create executables 2023-12-15T13:27:27,430 See `config.log' for more details 2023-12-15T13:27:27,518 make: *** [Makefile:79: libhts.a] Error 77 2023-12-15T13:27:27,522 Traceback (most recent call last): 2023-12-15T13:27:27,522 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2023-12-15T13:27:27,523 main() 2023-12-15T13:27:27,523 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2023-12-15T13:27:27,524 json_out['return_val'] = hook(**hook_input['kwargs']) 2023-12-15T13:27:27,524 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel 2023-12-15T13:27:27,525 return _build_backend().build_wheel(wheel_directory, config_settings, 2023-12-15T13:27:27,525 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 404, in build_wheel 2023-12-15T13:27:27,526 return self._build_with_temp_dir( 2023-12-15T13:27:27,526 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 389, in _build_with_temp_dir 2023-12-15T13:27:27,527 self.run_setup() 2023-12-15T13:27:27,527 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 480, in run_setup 2023-12-15T13:27:27,528 super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script) 2023-12-15T13:27:27,528 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 311, in run_setup 2023-12-15T13:27:27,528 exec(code, locals()) 2023-12-15T13:27:27,529 File "", line 118, in 2023-12-15T13:27:27,529 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 103, in setup 2023-12-15T13:27:27,530 return distutils.core.setup(**attrs) 2023-12-15T13:27:27,530 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup 2023-12-15T13:27:27,531 return run_commands(dist) 2023-12-15T13:27:27,531 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands 2023-12-15T13:27:27,531 dist.run_commands() 2023-12-15T13:27:27,532 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands 2023-12-15T13:27:27,533 self.run_command(cmd) 2023-12-15T13:27:27,533 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 963, in run_command 2023-12-15T13:27:27,534 super().run_command(command) 2023-12-15T13:27:27,535 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-12-15T13:27:27,536 cmd_obj.run() 2023-12-15T13:27:27,536 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/wheel/bdist_wheel.py", line 368, in run 2023-12-15T13:27:27,537 self.run_command("build") 2023-12-15T13:27:27,537 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-12-15T13:27:27,538 self.distribution.run_command(command) 2023-12-15T13:27:27,538 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 963, in run_command 2023-12-15T13:27:27,539 super().run_command(command) 2023-12-15T13:27:27,539 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-12-15T13:27:27,540 cmd_obj.run() 2023-12-15T13:27:27,541 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run 2023-12-15T13:27:27,541 self.run_command(cmd_name) 2023-12-15T13:27:27,541 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 318, in run_command 2023-12-15T13:27:27,542 self.distribution.run_command(command) 2023-12-15T13:27:27,542 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/dist.py", line 963, in run_command 2023-12-15T13:27:27,543 super().run_command(command) 2023-12-15T13:27:27,544 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 988, in run_command 2023-12-15T13:27:27,545 cmd_obj.run() 2023-12-15T13:27:27,545 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/cffi/setuptools_ext.py", line 144, in run 2023-12-15T13:27:27,545 base_class.run(self) 2023-12-15T13:27:27,546 File "", line 105, in run 2023-12-15T13:27:27,546 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 339, in execute 2023-12-15T13:27:27,547 util.execute(func, args, msg, dry_run=self.dry_run) 2023-12-15T13:27:27,547 File "/tmp/pip-build-env-9r6iy0d_/overlay/lib/python3.9/site-packages/setuptools/_distutils/util.py", line 337, in execute 2023-12-15T13:27:27,547 func(*args) 2023-12-15T13:27:27,548 File "", line 103, in compile_hts 2023-12-15T13:27:27,548 File "/usr/lib/python3.9/subprocess.py", line 373, in check_call 2023-12-15T13:27:27,549 raise CalledProcessError(retcode, cmd) 2023-12-15T13:27:27,549 subprocess.CalledProcessError: Command '['make', 'libhts.a']' returned non-zero exit status 2. 2023-12-15T13:27:27,661 ERROR: Building wheel for medaka (pyproject.toml) exited with 1 2023-12-15T13:27:27,679 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpmx_zj8ai[/] 2023-12-15T13:27:27,679 [bold magenta]cwd[/]: /tmp/pip-wheel-03orp4el/medaka_e41b060e28bb4cb99cf9ab3d1688817d 2023-12-15T13:27:27,679 Building wheel for medaka (pyproject.toml): finished with status 'error' 2023-12-15T13:27:27,681 ERROR: Failed building wheel for medaka 2023-12-15T13:27:27,684 Failed to build medaka 2023-12-15T13:27:27,685 ERROR: Failed to build one or more wheels 2023-12-15T13:27:27,686 Exception information: 2023-12-15T13:27:27,686 Traceback (most recent call last): 2023-12-15T13:27:27,686 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2023-12-15T13:27:27,686 status = run_func(*args) 2023-12-15T13:27:27,686 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2023-12-15T13:27:27,686 return func(self, options, args) 2023-12-15T13:27:27,686 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 181, in run 2023-12-15T13:27:27,686 raise CommandError("Failed to build one or more wheels") 2023-12-15T13:27:27,686 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2023-12-15T13:27:27,688 Removed build tracker: '/tmp/pip-build-tracker-9rryp2nt'