2023-12-15T14:32:42,769 Created temporary directory: /tmp/pip-build-tracker-tx7m9qp_
2023-12-15T14:32:42,771 Initialized build tracking at /tmp/pip-build-tracker-tx7m9qp_
2023-12-15T14:32:42,771 Created build tracker: /tmp/pip-build-tracker-tx7m9qp_
2023-12-15T14:32:42,772 Entered build tracker: /tmp/pip-build-tracker-tx7m9qp_
2023-12-15T14:32:42,773 Created temporary directory: /tmp/pip-wheel-1xbg4et1
2023-12-15T14:32:42,776 Created temporary directory: /tmp/pip-ephem-wheel-cache-cbrfnyzg
2023-12-15T14:32:42,800 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T14:32:42,804 2 location(s) to search for versions of moleculekit:
2023-12-15T14:32:42,804 * https://pypi.org/simple/moleculekit/
2023-12-15T14:32:42,804 * https://www.piwheels.org/simple/moleculekit/
2023-12-15T14:32:42,805 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-12-15T14:32:42,805 Getting page https://pypi.org/simple/moleculekit/
2023-12-15T14:32:42,807 Found index url https://pypi.org/simple/
2023-12-15T14:32:43,030 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-12-15T14:32:43,069   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,070   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-12-15T14:32:43,070   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,071   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-12-15T14:32:43,072   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,073   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-12-15T14:32:43,073   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,074   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-12-15T14:32:43,075   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,076   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-12-15T14:32:43,077   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,077   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-12-15T14:32:43,078   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,079   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-12-15T14:32:43,080   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,080   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-12-15T14:32:43,081   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,082   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-12-15T14:32:43,082   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,083   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-12-15T14:32:43,083   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,084   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-12-15T14:32:43,085   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,086   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-12-15T14:32:43,086   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,087   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-12-15T14:32:43,087   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,088   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-12-15T14:32:43,089   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,089   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-12-15T14:32:43,090   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,091   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-12-15T14:32:43,091   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,092   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-12-15T14:32:43,092   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,093   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-12-15T14:32:43,094   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,094   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-12-15T14:32:43,095   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,095   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-12-15T14:32:43,096   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,097   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-12-15T14:32:43,097   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,098   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-12-15T14:32:43,099   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,099   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-12-15T14:32:43,100   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,101   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-12-15T14:32:43,101   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,102   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-12-15T14:32:43,102   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,103   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-12-15T14:32:43,103   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,104   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-12-15T14:32:43,105   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,105   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-12-15T14:32:43,106   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,106   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-12-15T14:32:43,107   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,108   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-12-15T14:32:43,108   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,109   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-12-15T14:32:43,110   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,111   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-12-15T14:32:43,112   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T14:32:43,112   Found link https://files.pythonhosted.org/packages/9d/1e/99ffa0d73766a735c3e91d591c92537e37b0024cd9b1d745c4e5933563c1/moleculekit-0.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.3.0
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2023-12-15T14:32:43,176   Found link https://files.pythonhosted.org/packages/85/87/2264a91838fc8d44f1661b9ae462976e2b9b23f002591db7be9287f51d43/moleculekit-1.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.4
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2023-12-15T14:32:43,179   Found link https://files.pythonhosted.org/packages/59/b9/6e9913fc67fa6321d5c441eb59a93e257f1fba383848a6bd645a7d427045/moleculekit-1.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.9
2023-12-15T14:32:43,180   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-12-15T14:32:43,182   Found link https://files.pythonhosted.org/packages/a1/56/2e1ac2fac4f566abf327baf326d17421047e363138c1c132a537a3eaf5ec/moleculekit-1.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.2
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2023-12-15T14:32:43,186   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
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2023-12-15T14:32:43,191   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2023-12-15T14:32:43,195   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
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2023-12-15T14:32:43,200   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2023-12-15T14:32:43,203   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-12-15T14:32:43,204   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-12-15T14:32:43,205   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-12-15T14:32:43,206   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
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2023-12-15T14:32:43,210   Found link https://files.pythonhosted.org/packages/c2/66/b802cbaa73639d3fb24d7aca0a21b932bd6b781103c3aa0662fd27dd64e0/moleculekit-1.6.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.6.1
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2023-12-15T14:32:43,218   Found link https://files.pythonhosted.org/packages/4e/3a/29fb1aa0e3792fef88348885348370f39af453fb75d5505a208068d1c4ac/moleculekit-1.7.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.1
2023-12-15T14:32:43,219   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-12-15T14:32:43,221   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-12-15T14:32:43,222   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-12-15T14:32:43,223   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-12-15T14:32:43,224   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-12-15T14:32:43,225   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-12-15T14:32:43,226   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-12-15T14:32:43,227   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-12-15T14:32:43,228   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-12-15T14:32:43,229   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-12-15T14:32:43,230   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-12-15T14:32:43,231   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-12-15T14:32:43,232   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-12-15T14:32:43,233   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-12-15T14:32:43,234   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-12-15T14:32:43,234   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-12-15T14:32:43,235   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-12-15T14:32:43,236   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-12-15T14:32:43,237   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-12-15T14:32:43,238   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-12-15T14:32:43,239   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-12-15T14:32:43,240   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-12-15T14:32:43,241   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2023-12-15T14:32:43,242   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2023-12-15T14:32:43,243   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2023-12-15T14:32:43,244   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2023-12-15T14:32:43,245 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-12-15T14:32:43,246 Getting page https://www.piwheels.org/simple/moleculekit/
2023-12-15T14:32:43,247 Found index url https://www.piwheels.org/simple/
2023-12-15T14:32:43,407 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-12-15T14:32:43,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,572   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,573   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,574   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,574   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,575   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,576   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,577   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,578   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,578   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,578   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,580   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,580   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,581   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,582   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,583   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,584   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,585   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,586   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,587   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,588   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,589   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,590   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,591   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,592   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,593   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,594   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,595   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,596   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,597   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,598   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,599   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,599   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T14:32:43,603   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T14:32:43,609   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T14:32:43,610   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T14:32:43,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,612   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,613   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,614   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,615   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,616   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,617   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,618   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,619   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,620   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,621   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,622   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,622   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,623   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,623   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,624   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,625   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,626   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,627   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,628   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,629   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,629   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,630   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,631   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,632   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,633   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.0-py3-none-any.whl#sha256=864f229abf24e864927569f3a17c74c39b977d8b7ba63cf2792e71f2c925eebd (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T14:32:43,634   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T14:32:43,652 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-12-15T14:32:43,653 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-12-15T14:32:43,694 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-12-15T14:32:43,712 Collecting moleculekit==1.8.17
2023-12-15T14:32:43,715   Created temporary directory: /tmp/pip-unpack-8my9bgj8
2023-12-15T14:32:43,931   Downloading moleculekit-1.8.17.tar.gz (6.7 MB)
2023-12-15T14:32:48,935   Added moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz to build tracker '/tmp/pip-build-tracker-tx7m9qp_'
2023-12-15T14:32:48,943   Created temporary directory: /tmp/pip-build-env-den78rgp
2023-12-15T14:32:48,948   Installing build dependencies: started
2023-12-15T14:32:48,949   Running command pip subprocess to install build dependencies
2023-12-15T14:32:50,090   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-15T14:32:51,571   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T14:32:53,012   Collecting setuptools
2023-12-15T14:32:53,028     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-15T14:32:53,614     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-15T14:32:53,617     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-15T14:32:53,621     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-15T14:32:53,624     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-15T14:32:53,628     Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11)
2023-12-15T14:32:53,893   Collecting numpy>=1.18.5
2023-12-15T14:32:53,908     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp311-cp311-linux_armv7l.whl (19.5 MB)
2023-12-15T14:32:55,517   Collecting Cython>=0.29.21
2023-12-15T14:32:55,531     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.6-cp311-cp311-linux_armv7l.whl (11.7 MB)
2023-12-15T14:32:55,920   Collecting toml
2023-12-15T14:32:55,938     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-12-15T14:32:56,031   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-12-15T14:32:56,054     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-12-15T14:32:58,728   Installing collected packages: versioneer, toml, setuptools, numpy, Cython
2023-12-15T14:32:58,758     Creating /tmp/pip-build-env-den78rgp/overlay/local/bin
2023-12-15T14:32:58,761     changing mode of /tmp/pip-build-env-den78rgp/overlay/local/bin/versioneer to 755
2023-12-15T14:33:09,128     changing mode of /tmp/pip-build-env-den78rgp/overlay/local/bin/f2py to 755
2023-12-15T14:33:12,625     changing mode of /tmp/pip-build-env-den78rgp/overlay/local/bin/cygdb to 755
2023-12-15T14:33:12,627     changing mode of /tmp/pip-build-env-den78rgp/overlay/local/bin/cython to 755
2023-12-15T14:33:12,629     changing mode of /tmp/pip-build-env-den78rgp/overlay/local/bin/cythonize to 755
2023-12-15T14:33:12,674   Successfully installed Cython-3.0.6 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 versioneer-0.28
2023-12-15T14:33:13,357   Installing build dependencies: finished with status 'done'
2023-12-15T14:33:13,360   Getting requirements to build wheel: started
2023-12-15T14:33:13,361   Running command Getting requirements to build wheel
2023-12-15T14:33:45,803   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-12-15T14:33:54,235   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,235   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,236   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,237   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,237   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,238   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,239   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,239   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,240   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,241   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-15T14:33:54,241   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-15T14:33:54,242   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-15T14:33:54,242   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd.
2023-12-15T14:33:54,243   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T14:33:54,244   [ 1/14] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-12-15T14:33:54,245   [ 2/14] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-12-15T14:33:54,245   [ 3/14] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-12-15T14:33:54,245   [ 4/14] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2023-12-15T14:33:54,246   [ 5/14] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-12-15T14:33:54,246   [ 6/14] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-12-15T14:33:54,247   [ 7/14] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-12-15T14:33:54,247   [ 8/14] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-12-15T14:33:54,248   [ 9/14] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-12-15T14:33:54,248   [10/14] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-12-15T14:33:54,249   [11/14] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-12-15T14:33:54,249   [12/14] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2023-12-15T14:33:54,250   [13/14] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2023-12-15T14:33:54,250   [14/14] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2023-12-15T14:33:54,511   running egg_info
2023-12-15T14:33:54,516   writing moleculekit.egg-info/PKG-INFO
2023-12-15T14:33:54,519   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-15T14:33:54,521   writing requirements to moleculekit.egg-info/requires.txt
2023-12-15T14:33:54,523   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-15T14:33:54,551   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,552   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,553   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,553   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,554   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T14:33:54,563   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,563   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T14:33:54,565   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:33:54,565   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T14:33:54,567   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T14:33:54,571   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T14:33:54,594   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:33:54,617   reading manifest template 'MANIFEST.in'
2023-12-15T14:33:54,868   no previously-included directories found matching 'moleculekit/test-data'
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2023-12-15T14:33:54,886   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:33:56,182   Getting requirements to build wheel: finished with status 'done'
2023-12-15T14:33:56,196   Installing backend dependencies: started
2023-12-15T14:33:56,197   Running command pip subprocess to install backend dependencies
2023-12-15T14:33:57,432   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2023-12-15T14:33:57,978   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T14:33:58,456   Collecting wheel
2023-12-15T14:33:58,470     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
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2023-12-15T14:34:00,934   Successfully installed wheel-0.42.0
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2023-12-15T14:34:01,426   Created temporary directory: /tmp/pip-modern-metadata-edozuupx
2023-12-15T14:34:01,429   Preparing metadata (pyproject.toml): started
2023-12-15T14:34:01,430   Running command Preparing metadata (pyproject.toml)
2023-12-15T14:34:03,764   running dist_info
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2023-12-15T14:34:03,822   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,823   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,823   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,824   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,825   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,825   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,826   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,826   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,827   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,828   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,828   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,829   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,829   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,830   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,831   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,832   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,832   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,832   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,833   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,833   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,834   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,834   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,835   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,835   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,836   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,836   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,837   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,837   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,838   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,838   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,839   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,840   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,840   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,841   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,841   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,842   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,842   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,843   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,843   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,844   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,844   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,845   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,845   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:03,845   reading manifest file '/tmp/pip-modern-metadata-edozuupx/moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:34:03,846   reading manifest template 'MANIFEST.in'
2023-12-15T14:34:04,100   no previously-included directories found matching 'moleculekit/test-data'
2023-12-15T14:34:04,101   no previously-included directories found matching 'moleculekit/tests'
2023-12-15T14:34:04,102   no previously-included directories found matching 'package'
2023-12-15T14:34:04,103   adding license file 'LICENSE'
2023-12-15T14:34:04,114   writing manifest file '/tmp/pip-modern-metadata-edozuupx/moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:34:04,122   creating '/tmp/pip-modern-metadata-edozuupx/moleculekit-1.8.17.dist-info'
2023-12-15T14:34:04,351   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-15T14:34:04,356   Source in /tmp/pip-wheel-1xbg4et1/moleculekit_513cab1c8a7345ac9c0a5f0e52e6db66 has version 1.8.17, which satisfies requirement moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz
2023-12-15T14:34:04,357   Removed moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz from build tracker '/tmp/pip-build-tracker-tx7m9qp_'
2023-12-15T14:34:04,362 Created temporary directory: /tmp/pip-unpack-sxberdp4
2023-12-15T14:34:04,364 Created temporary directory: /tmp/pip-unpack-ljak2j_u
2023-12-15T14:34:04,372 Building wheels for collected packages: moleculekit
2023-12-15T14:34:04,376   Created temporary directory: /tmp/pip-wheel-ickobk5p
2023-12-15T14:34:04,376   Destination directory: /tmp/pip-wheel-ickobk5p
2023-12-15T14:34:04,378   Building wheel for moleculekit (pyproject.toml): started
2023-12-15T14:34:04,379   Running command Building wheel for moleculekit (pyproject.toml)
2023-12-15T14:34:06,584   running bdist_wheel
2023-12-15T14:34:06,598   running build
2023-12-15T14:34:06,599   running build_py
2023-12-15T14:34:06,605   creating build
2023-12-15T14:34:06,605   creating build/lib.linux-armv7l-cpython-311
2023-12-15T14:34:06,606   creating build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,607   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,611   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,613   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,615   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,618   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,620   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,624   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,629   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,631   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,633   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,635   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,637   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,639   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,641   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,643   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,645   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,646   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,648   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,650   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,652   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,655   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:06,658   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-15T14:34:06,659   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx
2023-12-15T14:34:06,661   creating build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-15T14:34:06,662   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-15T14:34:06,667   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-15T14:34:06,670   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/ply
2023-12-15T14:34:06,672   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-15T14:34:06,673   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-15T14:34:06,676   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-15T14:34:06,679   creating build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,680   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,683   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,685   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,687   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,689   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,692   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,694   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,696   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,697   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,700   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,702   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,704   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,707   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,709   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,711   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-311/moleculekit/projections
2023-12-15T14:34:06,714   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2023-12-15T14:34:06,715   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2023-12-15T14:34:06,718   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2023-12-15T14:34:06,720   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats
2023-12-15T14:34:06,722   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,723   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,726   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,729   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,732   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,735   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,737   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,740   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,741   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,744   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,746   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,749   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,751   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,752   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,755   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools
2023-12-15T14:34:06,758   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,759   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,761   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,764   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,767   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,769   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,771   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol
2023-12-15T14:34:06,773   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-15T14:34:06,774   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-15T14:34:06,777   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-15T14:34:06,779   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-15T14:34:06,781   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect
2023-12-15T14:34:06,783   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-15T14:34:06,785   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-15T14:34:06,787   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-15T14:34:06,789   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-15T14:34:06,792   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests
2023-12-15T14:34:06,794   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-15T14:34:06,795   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-15T14:34:06,799   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-15T14:34:06,801   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-15T14:34:06,804   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader
2023-12-15T14:34:06,806   creating build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-15T14:34:06,808   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-15T14:34:06,810   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer
2023-12-15T14:34:06,813   creating build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-15T14:34:06,814   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-15T14:34:06,816   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools
2023-12-15T14:34:06,819   creating build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-15T14:34:06,820   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-15T14:34:06,823   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-15T14:34:06,826   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-15T14:34:06,828   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools
2023-12-15T14:34:06,830   running egg_info
2023-12-15T14:34:06,835   writing moleculekit.egg-info/PKG-INFO
2023-12-15T14:34:06,839   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-15T14:34:06,840   writing requirements to moleculekit.egg-info/requires.txt
2023-12-15T14:34:06,842   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-15T14:34:06,858   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,859   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,860   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,860   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,861   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,861   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,862   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,862   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,863   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,863   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,864   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,864   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,865   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,866   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,866   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,867   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,868   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,868   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,869   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,869   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,869   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,870   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,870   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,871   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,871   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,872   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,873   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,873   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,874   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,874   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,875   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,875   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,876   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,877   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,877   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,878   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,878   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,879   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,879   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,879   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,880   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,881   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,881   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,882   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,882   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,883   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,884   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,884   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,885   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,885   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,886   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,886   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,887   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,888   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,888   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,889   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,889   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,890   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,890   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,891   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,891   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,892   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,892   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,893   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,893   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,894   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,894   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,895   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,895   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,896   dependency /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T14:34:06,896   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:34:06,897   reading manifest template 'MANIFEST.in'
2023-12-15T14:34:07,139   no previously-included directories found matching 'moleculekit/test-data'
2023-12-15T14:34:07,140   no previously-included directories found matching 'moleculekit/tests'
2023-12-15T14:34:07,142   no previously-included directories found matching 'package'
2023-12-15T14:34:07,142   adding license file 'LICENSE'
2023-12-15T14:34:07,157   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T14:34:07,166   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-12-15T14:34:07,166   !!

2023-12-15T14:34:07,167           ********************************************************************************
2023-12-15T14:34:07,168           ############################
2023-12-15T14:34:07,168           # Package would be ignored #
2023-12-15T14:34:07,169           ############################
2023-12-15T14:34:07,169           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-12-15T14:34:07,170           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,171           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,172           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-12-15T14:34:07,172           to the `packages` configuration field.

2023-12-15T14:34:07,173           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,174           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,174           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,176           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,177           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,178           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-12-15T14:34:07,178           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-12-15T14:34:07,179           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,179           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,180           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,181           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,182           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,183           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,184                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,184                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,184                 directory, all directories are treated like packages.
2023-12-15T14:34:07,185           ********************************************************************************

2023-12-15T14:34:07,186   !!
2023-12-15T14:34:07,186     check.warn(importable)
2023-12-15T14:34:07,187   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-12-15T14:34:07,188   !!

2023-12-15T14:34:07,189           ********************************************************************************
2023-12-15T14:34:07,189           ############################
2023-12-15T14:34:07,190           # Package would be ignored #
2023-12-15T14:34:07,190           ############################
2023-12-15T14:34:07,191           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-12-15T14:34:07,192           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,193           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,193           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-12-15T14:34:07,194           to the `packages` configuration field.

2023-12-15T14:34:07,194           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,195           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,195           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,196           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,197           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,198           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-12-15T14:34:07,198           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-12-15T14:34:07,199           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,199           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,200           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,200           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,201           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,203           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,203                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,204                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,204                 directory, all directories are treated like packages.
2023-12-15T14:34:07,205           ********************************************************************************

2023-12-15T14:34:07,206   !!
2023-12-15T14:34:07,206     check.warn(importable)
2023-12-15T14:34:07,207   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-12-15T14:34:07,207   !!

2023-12-15T14:34:07,208           ********************************************************************************
2023-12-15T14:34:07,208           ############################
2023-12-15T14:34:07,209           # Package would be ignored #
2023-12-15T14:34:07,209           ############################
2023-12-15T14:34:07,209           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-12-15T14:34:07,210           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,211           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,212           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-12-15T14:34:07,212           to the `packages` configuration field.

2023-12-15T14:34:07,213           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,213           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,214           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,215           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,216           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,217           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-12-15T14:34:07,218           already explicitly excluding 'moleculekit.distance_utils' via
2023-12-15T14:34:07,218           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,219           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,219           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,220           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,221           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,222           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,222                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,223                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,223                 directory, all directories are treated like packages.
2023-12-15T14:34:07,223           ********************************************************************************

2023-12-15T14:34:07,224   !!
2023-12-15T14:34:07,224     check.warn(importable)
2023-12-15T14:34:07,225   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2023-12-15T14:34:07,225   !!

2023-12-15T14:34:07,226           ********************************************************************************
2023-12-15T14:34:07,226           ############################
2023-12-15T14:34:07,226           # Package would be ignored #
2023-12-15T14:34:07,227           ############################
2023-12-15T14:34:07,227           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2023-12-15T14:34:07,228           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,229           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,229           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2023-12-15T14:34:07,230           to the `packages` configuration field.

2023-12-15T14:34:07,231           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,231           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,231           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,232           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,233           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,234           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2023-12-15T14:34:07,235           already explicitly excluding 'moleculekit.fileformats.binpos' via
2023-12-15T14:34:07,235           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,236           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,236           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,237           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,238           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,239           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,239                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,240                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,241                 directory, all directories are treated like packages.
2023-12-15T14:34:07,241           ********************************************************************************

2023-12-15T14:34:07,242   !!
2023-12-15T14:34:07,243     check.warn(importable)
2023-12-15T14:34:07,243   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2023-12-15T14:34:07,243   !!

2023-12-15T14:34:07,244           ********************************************************************************
2023-12-15T14:34:07,245           ############################
2023-12-15T14:34:07,245           # Package would be ignored #
2023-12-15T14:34:07,245           ############################
2023-12-15T14:34:07,246           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2023-12-15T14:34:07,246           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,247           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,247           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2023-12-15T14:34:07,247           to the `packages` configuration field.

2023-12-15T14:34:07,248           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,248           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,249           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,250           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,250           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,251           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2023-12-15T14:34:07,252           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2023-12-15T14:34:07,252           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,253           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,253           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,254           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,255           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,256           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,257                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,257                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,258                 directory, all directories are treated like packages.
2023-12-15T14:34:07,258           ********************************************************************************

2023-12-15T14:34:07,259   !!
2023-12-15T14:34:07,260     check.warn(importable)
2023-12-15T14:34:07,260   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2023-12-15T14:34:07,261   !!

2023-12-15T14:34:07,262           ********************************************************************************
2023-12-15T14:34:07,263           ############################
2023-12-15T14:34:07,263           # Package would be ignored #
2023-12-15T14:34:07,264           ############################
2023-12-15T14:34:07,264           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2023-12-15T14:34:07,265           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,266           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,266           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2023-12-15T14:34:07,267           to the `packages` configuration field.

2023-12-15T14:34:07,268           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,269           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,270           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,270           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,271           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,272           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2023-12-15T14:34:07,273           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2023-12-15T14:34:07,273           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,273           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,274           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,275           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,275           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,277           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,277                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,278                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,278                 directory, all directories are treated like packages.
2023-12-15T14:34:07,278           ********************************************************************************

2023-12-15T14:34:07,279   !!
2023-12-15T14:34:07,280     check.warn(importable)
2023-12-15T14:34:07,281   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2023-12-15T14:34:07,281   !!

2023-12-15T14:34:07,282           ********************************************************************************
2023-12-15T14:34:07,283           ############################
2023-12-15T14:34:07,283           # Package would be ignored #
2023-12-15T14:34:07,284           ############################
2023-12-15T14:34:07,284           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2023-12-15T14:34:07,285           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,286           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,286           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2023-12-15T14:34:07,287           to the `packages` configuration field.

2023-12-15T14:34:07,288           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,289           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,289           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,291           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,292           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,305           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2023-12-15T14:34:07,308           already explicitly excluding 'moleculekit.fileformats.dcd' via
2023-12-15T14:34:07,309           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,310           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,311           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,312           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,313           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,316           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,321                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,322                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,323                 directory, all directories are treated like packages.
2023-12-15T14:34:07,323           ********************************************************************************

2023-12-15T14:34:07,325   !!
2023-12-15T14:34:07,326     check.warn(importable)
2023-12-15T14:34:07,326   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2023-12-15T14:34:07,327   !!

2023-12-15T14:34:07,329           ********************************************************************************
2023-12-15T14:34:07,329           ############################
2023-12-15T14:34:07,330           # Package would be ignored #
2023-12-15T14:34:07,331           ############################
2023-12-15T14:34:07,332           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2023-12-15T14:34:07,332           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,334           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,334           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2023-12-15T14:34:07,335           to the `packages` configuration field.

2023-12-15T14:34:07,337           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,337           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,338           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,339           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,343           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,345           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2023-12-15T14:34:07,345           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2023-12-15T14:34:07,346           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,346           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,347           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,348           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,349           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,351           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,351                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,352                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,352                 directory, all directories are treated like packages.
2023-12-15T14:34:07,353           ********************************************************************************

2023-12-15T14:34:07,354   !!
2023-12-15T14:34:07,354     check.warn(importable)
2023-12-15T14:34:07,355   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2023-12-15T14:34:07,356   !!

2023-12-15T14:34:07,357           ********************************************************************************
2023-12-15T14:34:07,357           ############################
2023-12-15T14:34:07,359           # Package would be ignored #
2023-12-15T14:34:07,360           ############################
2023-12-15T14:34:07,363           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2023-12-15T14:34:07,367           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,372           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,373           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2023-12-15T14:34:07,374           to the `packages` configuration field.

2023-12-15T14:34:07,375           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,375           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,376           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,380           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,381           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,382           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2023-12-15T14:34:07,383           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2023-12-15T14:34:07,384           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,388           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,391           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,395           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,395           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,397           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,397                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,398                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,398                 directory, all directories are treated like packages.
2023-12-15T14:34:07,399           ********************************************************************************

2023-12-15T14:34:07,400   !!
2023-12-15T14:34:07,400     check.warn(importable)
2023-12-15T14:34:07,401   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2023-12-15T14:34:07,401   !!

2023-12-15T14:34:07,402           ********************************************************************************
2023-12-15T14:34:07,403           ############################
2023-12-15T14:34:07,403           # Package would be ignored #
2023-12-15T14:34:07,404           ############################
2023-12-15T14:34:07,404           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2023-12-15T14:34:07,405           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,406           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,406           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2023-12-15T14:34:07,407           to the `packages` configuration field.

2023-12-15T14:34:07,408           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,408           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,409           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,410           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,412           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,413           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2023-12-15T14:34:07,413           already explicitly excluding 'moleculekit.fileformats.xtc' via
2023-12-15T14:34:07,414           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,415           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,415           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,416           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,417           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,418           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,419                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,419                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,419                 directory, all directories are treated like packages.
2023-12-15T14:34:07,420           ********************************************************************************

2023-12-15T14:34:07,421   !!
2023-12-15T14:34:07,421     check.warn(importable)
2023-12-15T14:34:07,422   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2023-12-15T14:34:07,422   !!

2023-12-15T14:34:07,423           ********************************************************************************
2023-12-15T14:34:07,424           ############################
2023-12-15T14:34:07,424           # Package would be ignored #
2023-12-15T14:34:07,424           ############################
2023-12-15T14:34:07,425           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2023-12-15T14:34:07,426           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,427           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,428           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2023-12-15T14:34:07,428           to the `packages` configuration field.

2023-12-15T14:34:07,430           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,430           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,431           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,432           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,433           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,435           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2023-12-15T14:34:07,435           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2023-12-15T14:34:07,436           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,436           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,437           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,438           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,439           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,441           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,442                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,442                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,443                 directory, all directories are treated like packages.
2023-12-15T14:34:07,444           ********************************************************************************

2023-12-15T14:34:07,445   !!
2023-12-15T14:34:07,446     check.warn(importable)
2023-12-15T14:34:07,446   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2023-12-15T14:34:07,447   !!

2023-12-15T14:34:07,448           ********************************************************************************
2023-12-15T14:34:07,449           ############################
2023-12-15T14:34:07,449           # Package would be ignored #
2023-12-15T14:34:07,449           ############################
2023-12-15T14:34:07,450           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2023-12-15T14:34:07,450           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,451           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,452           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2023-12-15T14:34:07,452           to the `packages` configuration field.

2023-12-15T14:34:07,453           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,453           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,454           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,455           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,456           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,457           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2023-12-15T14:34:07,457           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2023-12-15T14:34:07,458           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,458           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,459           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,460           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,461           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,463           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,463                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,464                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,464                 directory, all directories are treated like packages.
2023-12-15T14:34:07,465           ********************************************************************************

2023-12-15T14:34:07,466   !!
2023-12-15T14:34:07,466     check.warn(importable)
2023-12-15T14:34:07,467   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-12-15T14:34:07,468   !!

2023-12-15T14:34:07,469           ********************************************************************************
2023-12-15T14:34:07,469           ############################
2023-12-15T14:34:07,484           # Package would be ignored #
2023-12-15T14:34:07,500           ############################
2023-12-15T14:34:07,502           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-12-15T14:34:07,505           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,512           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,517           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-12-15T14:34:07,532           to the `packages` configuration field.

2023-12-15T14:34:07,579           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,597           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,614           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,621           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,623           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,624           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-12-15T14:34:07,625           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-12-15T14:34:07,625           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,626           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,626           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,628           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,629           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,632           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,632                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,633                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,633                 directory, all directories are treated like packages.
2023-12-15T14:34:07,634           ********************************************************************************

2023-12-15T14:34:07,635   !!
2023-12-15T14:34:07,635     check.warn(importable)
2023-12-15T14:34:07,636   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-12-15T14:34:07,636   !!

2023-12-15T14:34:07,638           ********************************************************************************
2023-12-15T14:34:07,638           ############################
2023-12-15T14:34:07,639           # Package would be ignored #
2023-12-15T14:34:07,640           ############################
2023-12-15T14:34:07,640           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-12-15T14:34:07,641           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,642           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,643           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-12-15T14:34:07,643           to the `packages` configuration field.

2023-12-15T14:34:07,645           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,646           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,646           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,647           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,649           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,650           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-12-15T14:34:07,651           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-12-15T14:34:07,651           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,652           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,653           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,654           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,655           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,657           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,657                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,658                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,658                 directory, all directories are treated like packages.
2023-12-15T14:34:07,660           ********************************************************************************

2023-12-15T14:34:07,661   !!
2023-12-15T14:34:07,661     check.warn(importable)
2023-12-15T14:34:07,662   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-12-15T14:34:07,663   !!

2023-12-15T14:34:07,664           ********************************************************************************
2023-12-15T14:34:07,665           ############################
2023-12-15T14:34:07,666           # Package would be ignored #
2023-12-15T14:34:07,666           ############################
2023-12-15T14:34:07,667           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-12-15T14:34:07,667           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,669           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,669           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-12-15T14:34:07,670           to the `packages` configuration field.

2023-12-15T14:34:07,671           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,672           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,672           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,673           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,674           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,676           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-12-15T14:34:07,676           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-12-15T14:34:07,677           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,677           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,678           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,679           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,681           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,683           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,684                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,684                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,685                 directory, all directories are treated like packages.
2023-12-15T14:34:07,686           ********************************************************************************

2023-12-15T14:34:07,687   !!
2023-12-15T14:34:07,688     check.warn(importable)
2023-12-15T14:34:07,688   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-12-15T14:34:07,689   !!

2023-12-15T14:34:07,690           ********************************************************************************
2023-12-15T14:34:07,691           ############################
2023-12-15T14:34:07,691           # Package would be ignored #
2023-12-15T14:34:07,692           ############################
2023-12-15T14:34:07,692           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-12-15T14:34:07,693           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,694           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,694           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-12-15T14:34:07,695           to the `packages` configuration field.

2023-12-15T14:34:07,695           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,696           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,696           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,697           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,698           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,699           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-12-15T14:34:07,699           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-12-15T14:34:07,700           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,700           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,701           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,702           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,703           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,704           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,705                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,705                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,706                 directory, all directories are treated like packages.
2023-12-15T14:34:07,706           ********************************************************************************

2023-12-15T14:34:07,707   !!
2023-12-15T14:34:07,707     check.warn(importable)
2023-12-15T14:34:07,708   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-12-15T14:34:07,709   !!

2023-12-15T14:34:07,710           ********************************************************************************
2023-12-15T14:34:07,710           ############################
2023-12-15T14:34:07,711           # Package would be ignored #
2023-12-15T14:34:07,711           ############################
2023-12-15T14:34:07,712           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-12-15T14:34:07,712           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,714           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,714           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-12-15T14:34:07,715           to the `packages` configuration field.

2023-12-15T14:34:07,716           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,716           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,717           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,718           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,719           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,720           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-12-15T14:34:07,721           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-12-15T14:34:07,721           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,722           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,722           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,723           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,724           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,725           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,726                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,726                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,726                 directory, all directories are treated like packages.
2023-12-15T14:34:07,727           ********************************************************************************

2023-12-15T14:34:07,728   !!
2023-12-15T14:34:07,728     check.warn(importable)
2023-12-15T14:34:07,729   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-12-15T14:34:07,729   !!

2023-12-15T14:34:07,730           ********************************************************************************
2023-12-15T14:34:07,730           ############################
2023-12-15T14:34:07,731           # Package would be ignored #
2023-12-15T14:34:07,731           ############################
2023-12-15T14:34:07,732           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-12-15T14:34:07,732           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,733           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,734           package, please make sure that 'moleculekit.share' is explicitly added
2023-12-15T14:34:07,734           to the `packages` configuration field.

2023-12-15T14:34:07,735           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,736           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,736           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,737           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,738           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,739           If you don't want 'moleculekit.share' to be distributed and are
2023-12-15T14:34:07,739           already explicitly excluding 'moleculekit.share' via
2023-12-15T14:34:07,740           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,741           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,741           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,742           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,743           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,745           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,745                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,745                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,746                 directory, all directories are treated like packages.
2023-12-15T14:34:07,747           ********************************************************************************

2023-12-15T14:34:07,748   !!
2023-12-15T14:34:07,748     check.warn(importable)
2023-12-15T14:34:07,749   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-12-15T14:34:07,749   !!

2023-12-15T14:34:07,750           ********************************************************************************
2023-12-15T14:34:07,751           ############################
2023-12-15T14:34:07,751           # Package would be ignored #
2023-12-15T14:34:07,751           ############################
2023-12-15T14:34:07,752           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-12-15T14:34:07,752           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,753           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,753           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-12-15T14:34:07,754           to the `packages` configuration field.

2023-12-15T14:34:07,755           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,755           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,756           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,757           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,757           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,758           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-12-15T14:34:07,759           already explicitly excluding 'moleculekit.share.atomselect' via
2023-12-15T14:34:07,759           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,759           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,760           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,761           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,762           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,763           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,764                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,764                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,765                 directory, all directories are treated like packages.
2023-12-15T14:34:07,766           ********************************************************************************

2023-12-15T14:34:07,767   !!
2023-12-15T14:34:07,767     check.warn(importable)
2023-12-15T14:34:07,768   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-12-15T14:34:07,768   !!

2023-12-15T14:34:07,770           ********************************************************************************
2023-12-15T14:34:07,770           ############################
2023-12-15T14:34:07,771           # Package would be ignored #
2023-12-15T14:34:07,771           ############################
2023-12-15T14:34:07,772           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-12-15T14:34:07,772           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,773           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,774           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-12-15T14:34:07,774           to the `packages` configuration field.

2023-12-15T14:34:07,775           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,776           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,776           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,777           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,778           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,779           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-12-15T14:34:07,780           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-12-15T14:34:07,780           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,780           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,781           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,782           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,783           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,784           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,784                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,785                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,785                 directory, all directories are treated like packages.
2023-12-15T14:34:07,786           ********************************************************************************

2023-12-15T14:34:07,787   !!
2023-12-15T14:34:07,787     check.warn(importable)
2023-12-15T14:34:07,787   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-12-15T14:34:07,788   !!

2023-12-15T14:34:07,789           ********************************************************************************
2023-12-15T14:34:07,789           ############################
2023-12-15T14:34:07,790           # Package would be ignored #
2023-12-15T14:34:07,790           ############################
2023-12-15T14:34:07,791           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-12-15T14:34:07,791           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,792           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,793           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-12-15T14:34:07,793           to the `packages` configuration field.

2023-12-15T14:34:07,795           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,795           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,796           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,797           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,798           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,799           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-12-15T14:34:07,799           already explicitly excluding 'moleculekit.tmalign' via
2023-12-15T14:34:07,800           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,800           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,801           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,802           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,803           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,805           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,805                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,806                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,806                 directory, all directories are treated like packages.
2023-12-15T14:34:07,807           ********************************************************************************

2023-12-15T14:34:07,808   !!
2023-12-15T14:34:07,808     check.warn(importable)
2023-12-15T14:34:07,809   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-12-15T14:34:07,809   !!

2023-12-15T14:34:07,810           ********************************************************************************
2023-12-15T14:34:07,810           ############################
2023-12-15T14:34:07,811           # Package would be ignored #
2023-12-15T14:34:07,811           ############################
2023-12-15T14:34:07,812           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-12-15T14:34:07,812           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,813           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,813           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-12-15T14:34:07,814           to the `packages` configuration field.

2023-12-15T14:34:07,815           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,815           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,816           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,817           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,817           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,818           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-12-15T14:34:07,819           already explicitly excluding 'moleculekit.tmalign.include' via
2023-12-15T14:34:07,819           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,820           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,820           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,821           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,822           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,824           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,825                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,825                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,826                 directory, all directories are treated like packages.
2023-12-15T14:34:07,826           ********************************************************************************

2023-12-15T14:34:07,827   !!
2023-12-15T14:34:07,828     check.warn(importable)
2023-12-15T14:34:07,828   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-12-15T14:34:07,829   !!

2023-12-15T14:34:07,829           ********************************************************************************
2023-12-15T14:34:07,830           ############################
2023-12-15T14:34:07,831           # Package would be ignored #
2023-12-15T14:34:07,831           ############################
2023-12-15T14:34:07,832           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-12-15T14:34:07,833           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,834           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,834           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-12-15T14:34:07,835           to the `packages` configuration field.

2023-12-15T14:34:07,836           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,836           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,837           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,838           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,838           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,839           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-12-15T14:34:07,840           already explicitly excluding 'moleculekit.tmalign.src' via
2023-12-15T14:34:07,840           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,840           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,841           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,842           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,843           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,844           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,844                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,845                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,845                 directory, all directories are treated like packages.
2023-12-15T14:34:07,846           ********************************************************************************

2023-12-15T14:34:07,847   !!
2023-12-15T14:34:07,847     check.warn(importable)
2023-12-15T14:34:07,848   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-12-15T14:34:07,849   !!

2023-12-15T14:34:07,850           ********************************************************************************
2023-12-15T14:34:07,850           ############################
2023-12-15T14:34:07,850           # Package would be ignored #
2023-12-15T14:34:07,851           ############################
2023-12-15T14:34:07,852           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-12-15T14:34:07,852           but it is absent from setuptools' `packages` configuration.

2023-12-15T14:34:07,853           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T14:34:07,853           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-12-15T14:34:07,854           to the `packages` configuration field.

2023-12-15T14:34:07,855           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T14:34:07,856           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T14:34:07,856           instead of `find_packages(...)`/`find:`).

2023-12-15T14:34:07,857           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T14:34:07,858           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T14:34:07,859           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-12-15T14:34:07,860           already explicitly excluding 'moleculekit.wrapping' via
2023-12-15T14:34:07,860           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T14:34:07,861           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T14:34:07,862           combination with a more fine grained `package-data` configuration.

2023-12-15T14:34:07,863           You can read more about "package data files" on setuptools documentation page:

2023-12-15T14:34:07,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T14:34:07,865           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T14:34:07,865                 even if it does not contain any `.py` files.
2023-12-15T14:34:07,866                 On the other hand, currently there is no concept of package data
2023-12-15T14:34:07,866                 directory, all directories are treated like packages.
2023-12-15T14:34:07,867           ********************************************************************************

2023-12-15T14:34:07,867   !!
2023-12-15T14:34:07,868     check.warn(importable)
2023-12-15T14:34:07,868   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:07,869   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:07,869   creating build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-15T14:34:07,870   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-15T14:34:07,870   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-15T14:34:07,871   creating build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-15T14:34:07,871   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-15T14:34:07,871   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-15T14:34:07,872   creating build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-15T14:34:07,872   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-15T14:34:07,873   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-15T14:34:07,874   creating build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-15T14:34:07,874   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-15T14:34:07,874   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-15T14:34:07,875   creating build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-15T14:34:07,875   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-15T14:34:07,876   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-15T14:34:07,876   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share
2023-12-15T14:34:07,877   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-15T14:34:07,877   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect
2023-12-15T14:34:07,878   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr
2023-12-15T14:34:07,878   creating build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,879   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,880   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,880   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,881   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,881   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,882   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,882   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,883   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,883   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,883   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,884   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,884   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,885   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,885   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,885   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,886   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,886   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,887   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,887   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,888   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,888   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,889   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,889   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,890   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,890   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,891   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,891   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,892   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,892   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,893   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,893   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,894   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,895   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,895   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,896   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,896   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,897   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,897   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,897   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,898   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,898   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,899   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,899   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,899   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,900   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,901   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,902   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,902   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,903   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,903   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,904   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,904   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,905   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,905   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,906   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,906   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,907   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,907   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,908   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,908   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,909   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,910   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,910   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,910   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,911   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,911   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,912   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,912   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,913   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,913   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,914   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,914   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,915   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,915   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,916   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,916   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,917   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,917   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,918   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,918   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,919   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,919   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,920   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,920   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,921   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,921   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,922   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,923   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,923   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,923   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,924   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,924   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,925   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,925   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,926   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,926   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,927   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,927   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,928   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,928   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,929   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,931   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,933   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,935   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,937   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,939   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,942   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,944   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,946   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,948   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,950   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,952   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,954   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,957   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,959   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,961   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,963   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,965   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,967   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,969   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,971   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,973   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,975   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,977   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,979   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,981   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,983   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,985   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,987   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,989   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,991   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,993   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,995   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:07,998   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,000   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,002   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,004   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,006   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,008   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,011   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,013   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,015   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,017   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,019   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,020   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,023   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,024   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,026   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,028   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,030   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,032   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,035   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,037   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,039   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,041   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,044   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,045   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,047   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,049   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,052   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,054   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,056   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,058   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,060   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,062   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,064   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,066   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,068   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,070   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,072   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,074   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,076   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,078   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,080   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,082   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues
2023-12-15T14:34:08,084   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-15T14:34:08,085   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-15T14:34:08,104   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-15T14:34:08,106   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-15T14:34:08,108   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-15T14:34:08,109   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include
2023-12-15T14:34:08,112   creating build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-15T14:34:08,112   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-15T14:34:08,119   creating build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-15T14:34:08,120   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-15T14:34:08,149   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-15T14:34:08,151   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-15T14:34:08,152   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-15T14:34:08,171   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-15T14:34:08,174   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-15T14:34:08,175   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-15T14:34:08,194   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-15T14:34:08,196   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-15T14:34:08,197   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-15T14:34:08,223   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-15T14:34:08,225   creating build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-15T14:34:08,226   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-15T14:34:08,250   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-15T14:34:08,253   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2023-12-15T14:34:08,254   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2023-12-15T14:34:08,268   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2023-12-15T14:34:08,270   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2023-12-15T14:34:08,272   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2023-12-15T14:34:08,273   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2023-12-15T14:34:08,275   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2023-12-15T14:34:08,277   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include
2023-12-15T14:34:08,280   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2023-12-15T14:34:08,281   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2023-12-15T14:34:08,283   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2023-12-15T14:34:08,284   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2023-12-15T14:34:08,298   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2023-12-15T14:34:08,300   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2023-12-15T14:34:08,302   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,303   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,305   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,307   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,310   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,312   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include
2023-12-15T14:34:08,315   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2023-12-15T14:34:08,315   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2023-12-15T14:34:08,319   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,320   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,348   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,351   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,353   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,355   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,382   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,384   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:34:08,386   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,388   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,390   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,392   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,395   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,397   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,399   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include
2023-12-15T14:34:08,400   creating build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,401   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,403   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,406   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,409   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,411   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:34:08,423   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-15T14:34:08,424   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.17'
2023-12-15T14:34:08,425   running build_ext
2023-12-15T14:34:08,434   building 'moleculekit.interactions.hbonds' extension
2023-12-15T14:34:08,435   creating build/temp.linux-armv7l-cpython-311
2023-12-15T14:34:08,435   creating build/temp.linux-armv7l-cpython-311/moleculekit
2023-12-15T14:34:08,436   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions
2023-12-15T14:34:08,437   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds
2023-12-15T14:34:08,438   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -O3
2023-12-15T14:34:08,751   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:34:08,751                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:34:08,752                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:34:08,753                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-12-15T14:34:08,753   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:34:08,754      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:34:08,754         |  ^~~~~~~
2023-12-15T14:34:39,063   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:34:39,344   building 'moleculekit.interactions.pipi' extension
2023-12-15T14:34:39,345   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi
2023-12-15T14:34:39,345   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -O3
2023-12-15T14:34:39,652   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:34:39,653                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:34:39,653                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:34:39,654                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-12-15T14:34:39,654   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:34:39,654      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:34:39,655         |  ^~~~~~~
2023-12-15T14:35:12,550   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:35:12,829   building 'moleculekit.interactions.cationpi' extension
2023-12-15T14:35:12,830   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi
2023-12-15T14:35:12,830   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -O3
2023-12-15T14:35:13,137   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:35:13,138                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:35:13,139                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:35:13,139                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-12-15T14:35:13,140   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:35:13,140      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:35:13,141         |  ^~~~~~~
2023-12-15T14:35:45,293   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:35:45,604   building 'moleculekit.interactions.sigmahole' extension
2023-12-15T14:35:45,605   creating build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole
2023-12-15T14:35:45,606   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-12-15T14:35:45,917   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:35:45,917                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:35:45,918                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:35:45,918                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-12-15T14:35:45,919   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:35:45,919      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:35:45,920         |  ^~~~~~~
2023-12-15T14:36:17,925   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:36:18,216   building 'moleculekit.wrapping' extension
2023-12-15T14:36:18,217   creating build/temp.linux-armv7l-cpython-311/moleculekit/wrapping
2023-12-15T14:36:18,217   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -O3
2023-12-15T14:36:18,529   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:36:18,529                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:36:18,530                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:36:18,531                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-12-15T14:36:18,531   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:36:18,532      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:36:18,533         |  ^~~~~~~
2023-12-15T14:36:48,716   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:36:48,913   building 'moleculekit.bondguesser_utils' extension
2023-12-15T14:36:48,913   creating build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils
2023-12-15T14:36:48,914   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-12-15T14:36:49,222   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:36:49,222                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:36:49,223                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:36:49,223                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-12-15T14:36:49,224   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:36:49,224      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:36:49,225         |  ^~~~~~~
2023-12-15T14:36:51,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-12-15T14:36:51,530   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T14:36:51,531   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-12-15T14:36:51,532         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T14:36:51,532   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T14:36:51,533   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-12-15T14:36:51,534         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T14:36:51,534   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T14:36:51,535   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-12-15T14:36:51,536         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T14:36:51,537   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,537   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,538         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,538   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,539   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T14:36:51,540         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,541   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,541   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,542         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,543   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,544   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,544         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,545   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,545   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T14:36:51,546         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,546   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,547   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,547         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,548   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,548   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,549         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,549   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,550   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T14:36:51,550         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,551   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,552   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,552         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,553   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,553   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,554         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,555   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,556   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,556         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,557   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,557   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,558         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,558   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,559   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,560         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,561   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,561   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T14:36:51,562         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,563   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,563   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,564         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,564   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,565   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T14:36:51,565         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,566   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,566   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,567         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,567   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,568   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T14:36:51,568         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,569   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,570   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,570         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,571   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T14:36:51,572   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T14:36:51,573         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-12-15T14:36:51,587   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T14:36:51,588   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-12-15T14:36:51,589         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-12-15T14:36:51,590   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T14:36:51,590   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-12-15T14:36:51,591         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-15T14:37:18,050   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:37:18,318   building 'moleculekit.atomselect_utils' extension
2023-12-15T14:37:18,319   creating build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils
2023-12-15T14:37:18,319   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-12-15T14:37:18,633   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:37:18,633                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:37:18,634                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:37:18,634                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-12-15T14:37:18,635   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:37:18,635      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:37:18,636         |  ^~~~~~~
2023-12-15T14:37:21,152   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-12-15T14:37:21,152   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T14:37:21,153   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-12-15T14:37:21,153         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-15T14:37:21,159   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-15T14:37:21,160   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T14:37:21,161   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-15T14:37:21,161         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T14:37:21,167   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-15T14:37:21,167   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T14:37:21,169   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-15T14:37:21,169         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T14:37:54,847   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:37:55,139   building 'moleculekit.distance_utils' extension
2023-12-15T14:37:55,139   creating build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils
2023-12-15T14:37:55,140   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -O3
2023-12-15T14:37:55,452   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:37:55,453                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:37:55,453                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:37:55,454                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-12-15T14:37:55,454   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:37:55,455      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:37:55,456         |  ^~~~~~~
2023-12-15T14:38:33,950   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:38:34,239   building 'moleculekit.occupancy_utils' extension
2023-12-15T14:38:34,239   creating build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils
2023-12-15T14:38:34,240   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-12-15T14:38:34,557   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:38:34,558                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:38:34,559                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:38:34,560                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-12-15T14:38:34,560   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:38:34,561      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:38:34,561         |  ^~~~~~~
2023-12-15T14:39:01,694   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:39:01,884   building 'moleculekit.xtc' extension
2023-12-15T14:39:01,885   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats
2023-12-15T14:39:01,885   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc
2023-12-15T14:39:01,886   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src
2023-12-15T14:39:01,886   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2023-12-15T14:39:02,529   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,530      66 |         "OK",
2023-12-15T14:39:02,531         |         ^~~~
2023-12-15T14:39:02,531   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,532      67 |         "Header",
2023-12-15T14:39:02,532         |         ^~~~~~~~
2023-12-15T14:39:02,533   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,533      68 |         "String",
2023-12-15T14:39:02,534         |         ^~~~~~~~
2023-12-15T14:39:02,534   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,535      69 |         "Double",
2023-12-15T14:39:02,535         |         ^~~~~~~~
2023-12-15T14:39:02,536   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,536      70 |         "Integer",
2023-12-15T14:39:02,537         |         ^~~~~~~~~
2023-12-15T14:39:02,538   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,538      71 |         "Float",
2023-12-15T14:39:02,539         |         ^~~~~~~
2023-12-15T14:39:02,540   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,540      72 |         "Unsigned integer",
2023-12-15T14:39:02,541         |         ^~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,541   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,542      73 |         "Compressed 3D coordinate",
2023-12-15T14:39:02,543         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,543   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,544      74 |         "Closing file",
2023-12-15T14:39:02,545         |         ^~~~~~~~~~~~~~
2023-12-15T14:39:02,545   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,546      75 |         "Magic number",
2023-12-15T14:39:02,546         |         ^~~~~~~~~~~~~~
2023-12-15T14:39:02,547   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,547      76 |         "Not enough memory",
2023-12-15T14:39:02,548         |         ^~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,548   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,549      77 |         "End of file",
2023-12-15T14:39:02,549         |         ^~~~~~~~~~~~~
2023-12-15T14:39:02,550   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:02,550      78 |         "File not found"
2023-12-15T14:39:02,551         |         ^~~~~~~~~~~~~~~~
2023-12-15T14:39:02,558   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-15T14:39:02,559   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,559     459 |     while (size >= num && num_of_bits < 32)
2023-12-15T14:39:02,560         |            ~~~~~^~~~~~
2023-12-15T14:39:02,561   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-15T14:39:02,562   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,563     505 |     while (bytes[num_of_bytes] >= num)
2023-12-15T14:39:02,563         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T14:39:02,567   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-15T14:39:02,567   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,568     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-15T14:39:02,569         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,569   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,570     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-12-15T14:39:02,570         |                             ~~^~~~~~~~~~~~~~
2023-12-15T14:39:02,571   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,572     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-12-15T14:39:02,573         |                             ~~^~~~~~~~~~~~~~~~
2023-12-15T14:39:02,574   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-15T14:39:02,575   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,575     664 |                 if (lastbits < num_of_bits)
2023-12-15T14:39:02,576         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-12-15T14:39:02,581   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-15T14:39:02,581   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,582     785 |         if(size3>xfp->buf1size)
2023-12-15T14:39:02,583         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:02,585   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,585     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:02,586         |                          ^
2023-12-15T14:39:02,589   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,592     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,593         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,593   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,594     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,594         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,595   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,595     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,596         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,596   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,597     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,598         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,598   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,599     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,599         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,600   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,601     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:02,602         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:02,602   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,603     756 |         int smallidx,  minidx, maxidx;
2023-12-15T14:39:02,603         |                        ^~~~~~
2023-12-15T14:39:02,604   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,605     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T14:39:02,605         |                                ^~~~~~
2023-12-15T14:39:02,606   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T14:39:02,607     763 |         int errval=1;
2023-12-15T14:39:02,607         |             ^~~~~~
2023-12-15T14:39:02,608   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-15T14:39:02,609   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,609    1011 |         if(size3>xfp->buf1size)
2023-12-15T14:39:02,610         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:02,611   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,611    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:02,612         |                                 ~~~~~~~~^~~~~~~
2023-12-15T14:39:02,612   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,613    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:02,613         |                           ~~~~~~~~^~~~~~~
2023-12-15T14:39:02,614   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,614    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:02,615         |                           ~~~~~~~~^~~~~~~
2023-12-15T14:39:02,616   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,616    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-15T14:39:02,617         |                         ^
2023-12-15T14:39:02,617   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,618    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:02,618         |                          ^
2023-12-15T14:39:02,619   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,619    1275 |         if(tmp==(unsigned int)buf2[0])
2023-12-15T14:39:02,620         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,621   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,621    1001 |         int errval;
2023-12-15T14:39:02,622         |             ^~~~~~
2023-12-15T14:39:02,623   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-15T14:39:02,623   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,624    1316 |         if(size3>xfp->buf1size)
2023-12-15T14:39:02,625         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:02,625   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,626    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:02,626         |                          ^
2023-12-15T14:39:02,628   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,628    1289 |         int smallidx,  maxidx, minidx;
2023-12-15T14:39:02,629         |                                ^~~~~~
2023-12-15T14:39:02,630   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,631    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T14:39:02,631         |                                ^~~~~~
2023-12-15T14:39:02,632   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T14:39:02,633    1297 |         int errval=1;
2023-12-15T14:39:02,634         |             ^~~~~~
2023-12-15T14:39:02,634   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-15T14:39:02,635   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,635    1513 |         if(size3>xfp->buf1size) {
2023-12-15T14:39:02,636         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:02,638   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,639    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-15T14:39:02,639         |                         ^
2023-12-15T14:39:02,640   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:02,641    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:02,641         |                          ^
2023-12-15T14:39:02,645   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:02,646    1743 |         if(tmp==(unsigned int)buf2[0])
2023-12-15T14:39:02,646         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:02,647   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:02,647    1504 |         int errval=1;
2023-12-15T14:39:02,648         |             ^~~~~~
2023-12-15T14:39:05,482   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2023-12-15T14:39:05,748   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o
2023-12-15T14:39:06,521   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-12-15T14:39:06,522   moleculekit/fileformats/xtc/src/xtc.cpp:238:37: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:06,523     238 |                 for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T14:39:06,523         |                                ~~~~~^~~~~~~~
2023-12-15T14:39:06,524   moleculekit/fileformats/xtc/src/xtc.cpp:207:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-15T14:39:06,525     207 |         int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-12-15T14:39:06,526         |             ^~~
2023-12-15T14:39:06,532   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-12-15T14:39:06,533   moleculekit/fileformats/xtc/src/xtc.cpp:418:13: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-15T14:39:06,534     418 |         int nf3 = nframes * 3;
2023-12-15T14:39:06,535         |             ^~~
2023-12-15T14:39:06,536   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-12-15T14:39:06,536   moleculekit/fileformats/xtc/src/xtc.cpp:548:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:06,537     548 |                         for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T14:39:06,537         |                                        ~~~~~^~~~~~~~
2023-12-15T14:39:06,540   moleculekit/fileformats/xtc/src/xtc.cpp:617:45: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:06,540     617 |                         for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T14:39:06,541         |                                        ~~~~~^~~~~~~~
2023-12-15T14:39:06,541   moleculekit/fileformats/xtc/src/xtc.cpp:491:13: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-12-15T14:39:06,542     491 |         int reading_index = 0;
2023-12-15T14:39:06,542         |             ^~~~~~~~~~~~~
2023-12-15T14:39:06,543   moleculekit/fileformats/xtc/src/xtc.cpp:492:13: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-12-15T14:39:06,544     492 |         int writing_index = 0;
2023-12-15T14:39:06,544         |             ^~~~~~~~~~~~~
2023-12-15T14:39:07,441   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o
2023-12-15T14:39:07,753   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:39:07,753                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:39:07,754                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:39:07,754                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2023-12-15T14:39:07,755   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:39:07,756      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:39:07,756         |  ^~~~~~~
2023-12-15T14:39:31,714   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:39:31,998   building 'moleculekit.trr' extension
2023-12-15T14:39:32,000   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o
2023-12-15T14:39:32,114   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o
2023-12-15T14:39:32,778   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,778      66 |         "OK",
2023-12-15T14:39:32,779         |         ^~~~
2023-12-15T14:39:32,780   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,780      67 |         "Header",
2023-12-15T14:39:32,781         |         ^~~~~~~~
2023-12-15T14:39:32,781   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,782      68 |         "String",
2023-12-15T14:39:32,782         |         ^~~~~~~~
2023-12-15T14:39:32,783   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,783      69 |         "Double",
2023-12-15T14:39:32,784         |         ^~~~~~~~
2023-12-15T14:39:32,785   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,785      70 |         "Integer",
2023-12-15T14:39:32,786         |         ^~~~~~~~~
2023-12-15T14:39:32,787   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,787      71 |         "Float",
2023-12-15T14:39:32,788         |         ^~~~~~~
2023-12-15T14:39:32,789   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,789      72 |         "Unsigned integer",
2023-12-15T14:39:32,790         |         ^~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,791   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,792      73 |         "Compressed 3D coordinate",
2023-12-15T14:39:32,792         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,794      74 |         "Closing file",
2023-12-15T14:39:32,795         |         ^~~~~~~~~~~~~~
2023-12-15T14:39:32,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,796      75 |         "Magic number",
2023-12-15T14:39:32,797         |         ^~~~~~~~~~~~~~
2023-12-15T14:39:32,797   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,798      76 |         "Not enough memory",
2023-12-15T14:39:32,799         |         ^~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,799   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,800      77 |         "End of file",
2023-12-15T14:39:32,801         |         ^~~~~~~~~~~~~
2023-12-15T14:39:32,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:9: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T14:39:32,802      78 |         "File not found"
2023-12-15T14:39:32,803         |         ^~~~~~~~~~~~~~~~
2023-12-15T14:39:32,803   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-15T14:39:32,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,805     459 |     while (size >= num && num_of_bits < 32)
2023-12-15T14:39:32,805         |            ~~~~~^~~~~~
2023-12-15T14:39:32,806   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-15T14:39:32,806   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,807     505 |     while (bytes[num_of_bytes] >= num)
2023-12-15T14:39:32,808         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T14:39:32,808   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-15T14:39:32,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,809     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-15T14:39:32,810         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,810   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,811     616 |                 for (i = 0; i < num_of_bytes; i++)
2023-12-15T14:39:32,812         |                             ~~^~~~~~~~~~~~~~
2023-12-15T14:39:32,812   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,813     624 |                 for (i = 0; i < num_of_bytes-1; i++)
2023-12-15T14:39:32,814         |                             ~~^~~~~~~~~~~~~~~~
2023-12-15T14:39:32,815   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-15T14:39:32,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,816     664 |                 if (lastbits < num_of_bits)
2023-12-15T14:39:32,817         |                     ~~~~~~~~~^~~~~~~~~~~~~
2023-12-15T14:39:32,817   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-15T14:39:32,818   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,819     785 |         if(size3>xfp->buf1size)
2023-12-15T14:39:32,820         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:32,821   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,821     842 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:32,822         |                          ^
2023-12-15T14:39:32,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,823     932 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,824         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,825   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,825     935 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,826         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,827   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,827     938 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,828         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,828   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,829     945 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,830         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,831     948 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,831         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,832   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,832     951 |                                 if(countmjh >= size3 ) { return -1; }
2023-12-15T14:39:32,833         |                                    ~~~~~~~~~^~~~~~~~
2023-12-15T14:39:32,833   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:24: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,834     756 |         int smallidx,  minidx, maxidx;
2023-12-15T14:39:32,835         |                        ^~~~~~
2023-12-15T14:39:32,835   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,836     759 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T14:39:32,837         |                                ^~~~~~
2023-12-15T14:39:32,837   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T14:39:32,838     763 |         int errval=1;
2023-12-15T14:39:32,838         |             ^~~~~~
2023-12-15T14:39:32,839   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-15T14:39:32,840   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,841    1011 |         if(size3>xfp->buf1size)
2023-12-15T14:39:32,842         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:32,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,843    1068 |                 countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:32,844         |                                 ~~~~~~~~^~~~~~~
2023-12-15T14:39:32,844   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,845    1084 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:32,846         |                           ~~~~~~~~^~~~~~~
2023-12-15T14:39:32,847   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,848    1098 |           countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T14:39:32,849         |                           ~~~~~~~~^~~~~~~
2023-12-15T14:39:32,849   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,850    1137 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-15T14:39:32,850         |                         ^
2023-12-15T14:39:32,851   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,851    1143 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:32,852         |                          ^
2023-12-15T14:39:32,853   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,853    1275 |         if(tmp==(unsigned int)buf2[0])
2023-12-15T14:39:32,854         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,854   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,855    1001 |         int errval;
2023-12-15T14:39:32,855         |             ^~~~~~
2023-12-15T14:39:32,856   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-15T14:39:32,857   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,857    1316 |         if(size3>xfp->buf1size)
2023-12-15T14:39:32,858         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:32,859   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,860    1377 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:32,860         |                          ^
2023-12-15T14:39:32,861   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:32: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,862    1289 |         int smallidx,  maxidx, minidx;
2023-12-15T14:39:32,862         |                                ^~~~~~
2023-12-15T14:39:32,863   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,864    1292 |         int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T14:39:32,864         |                                ^~~~~~
2023-12-15T14:39:32,865   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:13: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T14:39:32,865    1297 |         int errval=1;
2023-12-15T14:39:32,866         |             ^~~~~~
2023-12-15T14:39:32,867   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-15T14:39:32,867   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,868    1513 |         if(size3>xfp->buf1size) {
2023-12-15T14:39:32,869         |            ~~~~~^~~~~~~~~~~~~~
2023-12-15T14:39:32,869   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,870    1628 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-15T14:39:32,871         |                         ^
2023-12-15T14:39:32,871   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:39:32,872    1633 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T14:39:32,873         |                          ^
2023-12-15T14:39:32,874   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:39:32,875    1743 |         if(tmp==(unsigned int)buf2[0])
2023-12-15T14:39:32,875         |            ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:39:32,876   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T14:39:32,876    1504 |         int errval=1;
2023-12-15T14:39:32,877         |             ^~~~~~
2023-12-15T14:39:35,704   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2023-12-15T14:39:35,808   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2023-12-15T14:39:35,809   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-12-15T14:39:35,809     111 |         if (slen != strlen(version)+1)
2023-12-15T14:39:35,810         |                  ^~
2023-12-15T14:39:35,810   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-12-15T14:39:35,811     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-12-15T14:39:35,811         |                                              ^~
2023-12-15T14:39:36,521   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o
2023-12-15T14:39:36,906   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:39:36,906                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:39:36,907                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:39:36,908                    from moleculekit/fileformats/xtc/trr.c:1226:
2023-12-15T14:39:36,908   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:39:36,909      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:39:36,909         |  ^~~~~~~
2023-12-15T14:39:37,686   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2023-12-15T14:39:37,701   moleculekit/fileformats/xtc/trr.c:16333:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2023-12-15T14:39:37,702   16333 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2023-12-15T14:39:37,703         |                                     ^~
2023-12-15T14:40:01,033   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2023-12-15T14:40:01,033   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:01,034    1128 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T14:40:01,034         |                                        ^~~~~~~~~~~~~~~
2023-12-15T14:40:01,048   moleculekit/fileformats/xtc/trr.c:14241:7: note: ‘__pyx_v_status’ was declared here
2023-12-15T14:40:01,048   14241 |   int __pyx_v_status;
2023-12-15T14:40:01,049         |       ^~~~~~~~~~~~~~
2023-12-15T14:40:12,696   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2023-12-15T14:40:12,707   moleculekit/fileformats/xtc/trr.c:11540:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,708   11540 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2023-12-15T14:40:12,708         |                   ^
2023-12-15T14:40:12,717   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ was declared here
2023-12-15T14:40:12,718   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2023-12-15T14:40:12,718         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,728   moleculekit/fileformats/xtc/trr.c:11536:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,728   11536 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T14:40:12,729         |                   ^
2023-12-15T14:40:12,738   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ was declared here
2023-12-15T14:40:12,738   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2023-12-15T14:40:12,739         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,740   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,741    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2023-12-15T14:40:12,741         |                                                                                               ^
2023-12-15T14:40:12,750   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2023-12-15T14:40:12,751   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2023-12-15T14:40:12,751         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,760   moleculekit/fileformats/xtc/trr.c:11530:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,761   11530 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2023-12-15T14:40:12,762         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T14:40:12,770   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ was declared here
2023-12-15T14:40:12,771   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2023-12-15T14:40:12,771         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,780   moleculekit/fileformats/xtc/trr.c:11483:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,781   11483 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2023-12-15T14:40:12,782         |                   ^
2023-12-15T14:40:12,790   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ was declared here
2023-12-15T14:40:12,791   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2023-12-15T14:40:12,791         |                     ^~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,801   moleculekit/fileformats/xtc/trr.c:11479:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,801   11479 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T14:40:12,802         |                   ^
2023-12-15T14:40:12,810   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ was declared here
2023-12-15T14:40:12,811   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2023-12-15T14:40:12,811         |                     ^~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,812   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,813    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2023-12-15T14:40:12,814         |                                                                                               ^
2023-12-15T14:40:12,822   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2023-12-15T14:40:12,823   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2023-12-15T14:40:12,823         |                     ^~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,833   moleculekit/fileformats/xtc/trr.c:11473:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,833   11473 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2023-12-15T14:40:12,834         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T14:40:12,842   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ was declared here
2023-12-15T14:40:12,843   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2023-12-15T14:40:12,844         |                     ^~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,853   moleculekit/fileformats/xtc/trr.c:11872:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,854   11872 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T14:40:12,855         |                 ^
2023-12-15T14:40:12,863   moleculekit/fileformats/xtc/trr.c:10094:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ was declared here
2023-12-15T14:40:12,864   10094 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2023-12-15T14:40:12,864         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,874   moleculekit/fileformats/xtc/trr.c:11868:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,874   11868 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T14:40:12,875         |                 ^
2023-12-15T14:40:12,883   moleculekit/fileformats/xtc/trr.c:10094:21: note: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ was declared here
2023-12-15T14:40:12,884   10094 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_xyz_buffer;
2023-12-15T14:40:12,885         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,894   moleculekit/fileformats/xtc/trr.c:11713:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,895   11713 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T14:40:12,895         |                   ^
2023-12-15T14:40:12,904   moleculekit/fileformats/xtc/trr.c:10090:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ was declared here
2023-12-15T14:40:12,905   10090 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2023-12-15T14:40:12,905         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,915   moleculekit/fileformats/xtc/trr.c:11709:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,915   11709 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T14:40:12,916         |                   ^
2023-12-15T14:40:12,925   moleculekit/fileformats/xtc/trr.c:10090:21: note: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ was declared here
2023-12-15T14:40:12,925   10090 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel_buffer;
2023-12-15T14:40:12,926         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,936   moleculekit/fileformats/xtc/trr.c:11765:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,936   11765 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T14:40:12,937         |                   ^
2023-12-15T14:40:12,946   moleculekit/fileformats/xtc/trr.c:10074:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ was declared here
2023-12-15T14:40:12,946   10074 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2023-12-15T14:40:12,947         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:12,956   moleculekit/fileformats/xtc/trr.c:11761:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:12,957   11761 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T14:40:12,957         |                   ^
2023-12-15T14:40:12,966   moleculekit/fileformats/xtc/trr.c:10074:21: note: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ was declared here
2023-12-15T14:40:12,967   10074 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces_buffer;
2023-12-15T14:40:12,967         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T14:40:19,513   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:40:19,670   building 'moleculekit.dcd' extension
2023-12-15T14:40:19,671   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd
2023-12-15T14:40:19,672   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src
2023-12-15T14:40:19,673   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o
2023-12-15T14:40:20,069   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:40:20,070                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:40:20,070                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:40:20,071                    from moleculekit/fileformats/dcd/dcd.c:1221:
2023-12-15T14:40:20,072   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:40:20,073      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:40:20,073         |  ^~~~~~~
2023-12-15T14:40:21,360   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2023-12-15T14:40:21,360                    from moleculekit/fileformats/dcd/dcd.c:1227:
2023-12-15T14:40:21,361   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,362     474 | static int fio_write_str(fio_fd fd, const char *str) {
2023-12-15T14:40:21,362         |            ^~~~~~~~~~~~~
2023-12-15T14:40:21,363   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,364     470 | static int fio_read_int32(fio_fd fd, int *i) {
2023-12-15T14:40:21,364         |            ^~~~~~~~~~~~~~
2023-12-15T14:40:21,365   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,365     466 | static int fio_write_int32(fio_fd fd, int i) {
2023-12-15T14:40:21,366         |            ^~~~~~~~~~~~~~~
2023-12-15T14:40:21,366   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,367     457 | static fio_size_t fio_ftell(fio_fd fd) {
2023-12-15T14:40:21,368         |                   ^~~~~~~~~
2023-12-15T14:40:21,368   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,369     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2023-12-15T14:40:21,370         |                   ^~~~~~~~~
2023-12-15T14:40:21,371   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,372     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2023-12-15T14:40:21,373         |                   ^~~~~~~~~
2023-12-15T14:40:21,374   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,374     394 | static int fio_fclose(fio_fd fd) {
2023-12-15T14:40:21,375         |            ^~~~~~~~~~
2023-12-15T14:40:21,376   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2023-12-15T14:40:21,376     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2023-12-15T14:40:21,377         |            ^~~~~~~~
2023-12-15T14:40:35,766   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2023-12-15T14:40:35,766   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:35,767    1123 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T14:40:35,767         |                                        ^~~~~~~~~~~~~~~
2023-12-15T14:40:35,774   moleculekit/fileformats/dcd/dcd.c:8003:7: note: ‘__pyx_v_i’ was declared here
2023-12-15T14:40:35,774    8003 |   int __pyx_v_i;
2023-12-15T14:40:35,775         |       ^~~~~~~~~
2023-12-15T14:40:39,127   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o
2023-12-15T14:40:39,352   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2023-12-15T14:40:39,353   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:40:39,353     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2023-12-15T14:40:39,354         |                                                       ^~
2023-12-15T14:40:39,355   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:40:39,355     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2023-12-15T14:40:39,356         |                                                      ^~
2023-12-15T14:40:39,356   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:40:39,357     194 |     if (input_integer[0] != dcdcordmagic)
2023-12-15T14:40:39,357         |                          ^~
2023-12-15T14:40:39,359   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:40:39,359     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2023-12-15T14:40:39,360         |                                               ^~
2023-12-15T14:40:39,360   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T14:40:39,361     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2023-12-15T14:40:39,362         |                                               ^~
2023-12-15T14:40:39,365   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2023-12-15T14:40:39,365   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:40:39,366     651 |         if (tmpbuf[i] != sizeof(float) * N)
2023-12-15T14:40:39,367         |                       ^~
2023-12-15T14:40:39,367   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T14:40:39,368     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2023-12-15T14:40:39,369         |                                                 ^~
2023-12-15T14:40:39,394   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2023-12-15T14:40:39,395   moleculekit/fileformats/dcd/include/endianswap.h: At top level:
2023-12-15T14:40:39,396   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2023-12-15T14:40:39,396      96 | static void swap2_aligned(void *v, long ndata) {
2023-12-15T14:40:39,397         |             ^~~~~~~~~~~~~
2023-12-15T14:40:39,398   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2023-12-15T14:40:39,398      32 | static void swap2_unaligned(void *v, long ndata) {
2023-12-15T14:40:39,399         |             ^~~~~~~~~~~~~~~
2023-12-15T14:40:39,400   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2023-12-15T14:40:39,401   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-12-15T14:40:39,401     474 | static int fio_write_str(fio_fd fd, const char *str) {
2023-12-15T14:40:39,402         |            ^~~~~~~~~~~~~
2023-12-15T14:40:39,403   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-12-15T14:40:39,404     470 | static int fio_read_int32(fio_fd fd, int *i) {
2023-12-15T14:40:39,404         |            ^~~~~~~~~~~~~~
2023-12-15T14:40:40,679   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:40:40,813   building 'moleculekit.binpos' extension
2023-12-15T14:40:40,814   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos
2023-12-15T14:40:40,815   creating build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src
2023-12-15T14:40:40,816   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o
2023-12-15T14:40:41,213   In file included from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T14:40:41,213                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T14:40:41,214                    from /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T14:40:41,215                    from moleculekit/fileformats/binpos/binpos.c:1221:
2023-12-15T14:40:41,215   /tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T14:40:41,216      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T14:40:41,217         |  ^~~~~~~
2023-12-15T14:40:55,689   In function ‘__pyx_pf_11moleculekit_6binpos_20BINPOSTrajectoryFile_6_read’,
2023-12-15T14:40:55,689       inlined from ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’ at moleculekit/fileformats/binpos/binpos.c:7485:13:
2023-12-15T14:40:55,696   moleculekit/fileformats/binpos/binpos.c:8026:6: warning: ‘__pyx_v_status’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:55,697    8026 |   if (__pyx_t_1) {
2023-12-15T14:40:55,697         |      ^
2023-12-15T14:40:55,698   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2023-12-15T14:40:55,703   moleculekit/fileformats/binpos/binpos.c:7503:7: note: ‘__pyx_v_status’ was declared here
2023-12-15T14:40:55,704    7503 |   int __pyx_v_status;
2023-12-15T14:40:55,705         |       ^~~~~~~~~~~~~~
2023-12-15T14:40:55,705   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized [-Wmaybe-uninitialized]
2023-12-15T14:40:55,706    1123 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T14:40:55,707         |                                        ^~~~~~~~~~~~~~~
2023-12-15T14:40:55,712   moleculekit/fileformats/binpos/binpos.c:7500:7: note: ‘__pyx_v_i’ was declared here
2023-12-15T14:40:55,712    7500 |   int __pyx_v_i;
2023-12-15T14:40:55,713         |       ^~~~~~~~~
2023-12-15T14:40:59,169   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o
2023-12-15T14:40:59,499   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:40:59,633   building 'moleculekit.tmalign' extension
2023-12-15T14:40:59,634   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign
2023-12-15T14:40:59,635   creating build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src
2023-12-15T14:40:59,637   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o -w
2023-12-15T14:41:33,412   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-den78rgp/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/usr/include/python3.11 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -w
2023-12-15T14:41:55,878   In file included from /usr/include/c++/12/vector:70,
2023-12-15T14:41:55,879                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-15T14:41:55,880   /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-12-15T14:41:55,881   /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-12-15T14:41:55,881     439 |       vector<_Tp, _Alloc>::
2023-12-15T14:41:55,882         |       ^~~~~~~~~~~~~~~~~~~
2023-12-15T14:41:56,680   In file included from /usr/include/c++/12/vector:64:
2023-12-15T14:41:56,681   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-15T14:41:56,682       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20760:32,
2023-12-15T14:41:56,683       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-15T14:41:56,683   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T14:41:56,684    1287 |           _M_realloc_insert(end(), __x);
2023-12-15T14:41:56,685         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T14:41:56,685   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-15T14:41:56,686       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20774:33,
2023-12-15T14:41:56,687       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-15T14:41:56,688   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T14:41:56,688    1287 |           _M_realloc_insert(end(), __x);
2023-12-15T14:41:56,689         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T14:41:56,689   In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
2023-12-15T14:41:56,690       inlined from ‘PyObject* __pyx_pf_11moleculekit_7tmalign_tmalign(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, std::string, std::string)’ at moleculekit/tmalign/tmalign_util.cpp:20859:34,
2023-12-15T14:41:56,690       inlined from ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’ at moleculekit/tmalign/tmalign_util.cpp:20245:52:
2023-12-15T14:41:56,691   /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T14:41:56,691    1287 |           _M_realloc_insert(end(), __x);
2023-12-15T14:41:56,692         |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T14:41:59,073   arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so
2023-12-15T14:41:59,472   UPDATING build/lib.linux-armv7l-cpython-311/moleculekit/_version.py
2023-12-15T14:41:59,472   set build/lib.linux-armv7l-cpython-311/moleculekit/_version.py to '1.8.17'
2023-12-15T14:41:59,473   installing to build/bdist.linux-armv7l/wheel
2023-12-15T14:41:59,474   running install
2023-12-15T14:41:59,511   running install_lib
2023-12-15T14:41:59,518   creating build/bdist.linux-armv7l
2023-12-15T14:41:59,519   creating build/bdist.linux-armv7l/wheel
2023-12-15T14:41:59,521   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:41:59,523   copying build/lib.linux-armv7l-cpython-311/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:41:59,529   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T14:41:59,530   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T14:41:59,554   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T14:41:59,556   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:41:59,559   copying build/lib.linux-armv7l-cpython-311/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:41:59,561   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T14:41:59,563   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T14:41:59,565   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T14:41:59,567   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-12-15T14:41:59,571   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,572   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,574   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,576   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,580   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,586   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,588   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,590   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,592   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,597   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,603   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,605   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,607   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,610   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,612   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,614   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,616   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,618   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,620   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,625   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,627   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,629   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,631   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,633   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,635   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,637   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,639   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,640   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,642   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,644   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,646   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,648   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,650   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,652   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,653   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,659   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,661   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,663   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,665   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,667   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,668   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,670   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,672   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,674   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,676   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,678   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,679   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,682   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,684   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,686   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,697   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,698   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,704   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,706   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,708   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,710   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,712   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,715   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,717   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,719   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,721   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,726   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,728   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,731   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,732   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,740   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,742   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,744   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,746   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,748   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,750   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,752   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,754   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,756   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,758   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,759   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,761   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,763   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,764   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,766   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,768   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,771   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,773   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,775   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,777   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,779   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,780   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,782   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,786   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,787   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,789   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,791   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,793   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,795   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,796   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,798   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,800   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,802   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,804   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,806   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,808   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,809   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,811   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,813   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,818   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,821   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,823   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,827   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,829   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,831   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,832   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,840   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,842   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,844   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,845   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,847   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,855   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,856   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,858   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,862   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,864   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,865   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,867   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,870   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,871   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,873   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,875   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,877   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,880   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,884   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,885   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,887   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,889   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,891   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,893   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,895   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,896   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,898   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,900   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,902   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,904   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,906   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T14:41:59,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T14:42:00,120   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-15T14:42:00,121   copying build/lib.linux-armv7l-cpython-311/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-15T14:42:00,122   copying build/lib.linux-armv7l-cpython-311/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,124   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-15T14:42:00,126   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T14:42:00,127   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T14:42:00,129   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T14:42:00,131   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T14:42:00,134   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T14:42:00,135   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-15T14:42:00,137   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T14:42:00,138   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T14:42:00,141   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T14:42:00,143   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T14:42:00,146   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T14:42:00,147   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T14:42:00,148   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T14:42:00,151   copying build/lib.linux-armv7l-cpython-311/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T14:42:00,152   copying build/lib.linux-armv7l-cpython-311/moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,166   copying build/lib.linux-armv7l-cpython-311/moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,185   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T14:42:00,187   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T14:42:00,192   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T14:42:00,195   copying build/lib.linux-armv7l-cpython-311/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T14:42:00,197   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,220   copying build/lib.linux-armv7l-cpython-311/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,223   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,243   copying build/lib.linux-armv7l-cpython-311/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,246   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,247   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T14:42:00,248   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T14:42:00,271   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T14:42:00,274   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,303   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T14:42:00,304   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T14:42:00,323   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T14:42:00,326   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,353   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,374   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T14:42:00,375   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T14:42:00,394   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T14:42:00,397   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,400   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T14:42:00,401   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T14:42:00,420   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T14:42:00,423   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,441   copying build/lib.linux-armv7l-cpython-311/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T14:42:00,443   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T14:42:00,444   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T14:42:00,446   copying build/lib.linux-armv7l-cpython-311/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T14:42:00,466   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,468   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,471   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,474   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,476   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,479   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,482   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,484   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,487   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,489   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,492   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,495   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,498   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,501   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,503   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,505   copying build/lib.linux-armv7l-cpython-311/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T14:42:00,509   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T14:42:00,510   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T14:42:00,512   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-15T14:42:00,513   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-15T14:42:00,516   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-15T14:42:00,517   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-15T14:42:00,523   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T14:42:00,525   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T14:42:00,547   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T14:42:00,549   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T14:42:00,551   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T14:42:00,565   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,566   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,568   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,570   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,573   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,575   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T14:42:00,578   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T14:42:00,580   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2023-12-15T14:42:00,581   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2023-12-15T14:42:00,584   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T14:42:00,587   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T14:42:00,590   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T14:42:00,592   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T14:42:00,594   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T14:42:00,596   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T14:42:00,599   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T14:42:00,601   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T14:42:00,618   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2023-12-15T14:42:00,619   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2023-12-15T14:42:00,622   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T14:42:00,623   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T14:42:00,626   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,628   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,630   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,656   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,658   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,683   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,685   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,687   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,689   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,691   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,693   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,695   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T14:42:00,699   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,700   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,702   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,705   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,708   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,711   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T14:42:00,713   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,716   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,718   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T14:42:00,720   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T14:42:00,723   copying build/lib.linux-armv7l-cpython-311/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T14:42:00,724   copying build/lib.linux-armv7l-cpython-311/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,729   copying build/lib.linux-armv7l-cpython-311/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,731   copying build/lib.linux-armv7l-cpython-311/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,734   copying build/lib.linux-armv7l-cpython-311/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,736   copying build/lib.linux-armv7l-cpython-311/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,738   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,767   copying build/lib.linux-armv7l-cpython-311/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,769   copying build/lib.linux-armv7l-cpython-311/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,772   copying build/lib.linux-armv7l-cpython-311/moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,784   copying build/lib.linux-armv7l-cpython-311/moleculekit/trr.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,807   copying build/lib.linux-armv7l-cpython-311/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,810   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,812   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,815   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,819   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,822   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,825   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,828   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T14:42:00,829   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T14:42:00,831   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T14:42:00,834   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,836   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,838   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,841   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,843   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,846   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,849   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,851   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,853   copying build/lib.linux-armv7l-cpython-311/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T14:42:00,856   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T14:42:00,857   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T14:42:00,860   copying build/lib.linux-armv7l-cpython-311/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T14:42:00,880   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,882   copying build/lib.linux-armv7l-cpython-311/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,885   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T14:42:00,886   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T14:42:00,908   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T14:42:00,911   copying build/lib.linux-armv7l-cpython-311/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,913   copying build/lib.linux-armv7l-cpython-311/moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,963   copying build/lib.linux-armv7l-cpython-311/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:00,965   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,000   copying build/lib.linux-armv7l-cpython-311/moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,030   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,032   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,035   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,039   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,042   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,046   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,049   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T14:42:01,051   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T14:42:01,054   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T14:42:01,057   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T14:42:01,059   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T14:42:01,061   copying build/lib.linux-armv7l-cpython-311/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T14:42:01,063   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,066   copying build/lib.linux-armv7l-cpython-311/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,068   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T14:42:01,069   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T14:42:01,072   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T14:42:01,075   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T14:42:01,078   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T14:42:01,079   copying build/lib.linux-armv7l-cpython-311/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,083   copying build/lib.linux-armv7l-cpython-311/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,086   copying build/lib.linux-armv7l-cpython-311/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T14:42:01,088   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T14:42:01,090   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T14:42:01,124   copying build/lib.linux-armv7l-cpython-311/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T14:42:01,126   running install_egg_info
2023-12-15T14:42:01,131   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.17-py3.11.egg-info
2023-12-15T14:42:01,144   running install_scripts
2023-12-15T14:42:01,194   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.17.dist-info/WHEEL
2023-12-15T14:42:01,197   creating '/tmp/pip-wheel-ickobk5p/.tmp-hfcuury9/moleculekit-1.8.17-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T14:42:01,200   adding 'moleculekit/__init__.py'
2023-12-15T14:42:01,202   adding 'moleculekit/_version.py'
2023-12-15T14:42:01,204   adding 'moleculekit/align.py'
2023-12-15T14:42:01,528   adding 'moleculekit/atomselect_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:01,687   adding 'moleculekit/binpos.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:01,693   adding 'moleculekit/bondguesser.py'
2023-12-15T14:42:01,937   adding 'moleculekit/bondguesser_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:01,946   adding 'moleculekit/config.py'
2023-12-15T14:42:02,100   adding 'moleculekit/dcd.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:02,106   adding 'moleculekit/dihedral.py'
2023-12-15T14:42:02,108   adding 'moleculekit/distance.py'
2023-12-15T14:42:02,422   adding 'moleculekit/distance_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:02,432   adding 'moleculekit/home.py'
2023-12-15T14:42:02,433   adding 'moleculekit/logging.ini'
2023-12-15T14:42:02,447   adding 'moleculekit/molecule.py'
2023-12-15T14:42:02,680   adding 'moleculekit/occupancy_utils.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:02,689   adding 'moleculekit/opm.py'
2023-12-15T14:42:02,691   adding 'moleculekit/periodictable.py'
2023-12-15T14:42:02,692   adding 'moleculekit/pymolgraphics.py'
2023-12-15T14:42:02,693   adding 'moleculekit/rcsb.py'
2023-12-15T14:42:02,695   adding 'moleculekit/rdkitintegration.py'
2023-12-15T14:42:02,708   adding 'moleculekit/readers.py'
2023-12-15T14:42:03,307   adding 'moleculekit/tmalign.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:03,612   adding 'moleculekit/trr.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:03,624   adding 'moleculekit/util.py'
2023-12-15T14:42:03,626   adding 'moleculekit/version.py'
2023-12-15T14:42:03,627   adding 'moleculekit/viewer.py'
2023-12-15T14:42:03,629   adding 'moleculekit/vmd_wrapper'
2023-12-15T14:42:03,631   adding 'moleculekit/vmdgraphics.py'
2023-12-15T14:42:03,633   adding 'moleculekit/vmdviewer.py'
2023-12-15T14:42:03,890   adding 'moleculekit/wrapping.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:03,904   adding 'moleculekit/writers.py'
2023-12-15T14:42:04,165   adding 'moleculekit/xtc.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:04,174   adding 'moleculekit/atomselect/__init__.py'
2023-12-15T14:42:04,176   adding 'moleculekit/atomselect/analyze.py'
2023-12-15T14:42:04,178   adding 'moleculekit/atomselect/atomselect.py'
2023-12-15T14:42:04,180   adding 'moleculekit/atomselect/languageparser.py'
2023-12-15T14:42:04,283   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-12-15T14:42:04,294   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-12-15T14:42:04,385   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-12-15T14:42:04,394   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-12-15T14:42:04,495   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-12-15T14:42:04,505   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-12-15T14:42:04,507   adding 'moleculekit/fileformats/__init__.py'
2023-12-15T14:42:04,512   adding 'moleculekit/fileformats/netcdf.py'
2023-12-15T14:42:04,514   adding 'moleculekit/fileformats/utils.py'
2023-12-15T14:42:04,575   adding 'moleculekit/fileformats/binpos/binpos.c'
2023-12-15T14:42:04,582   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2023-12-15T14:42:04,583   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2023-12-15T14:42:04,585   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2023-12-15T14:42:04,586   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2023-12-15T14:42:04,592   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2023-12-15T14:42:04,594   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2023-12-15T14:42:04,657   adding 'moleculekit/fileformats/dcd/dcd.c'
2023-12-15T14:42:04,665   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2023-12-15T14:42:04,666   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2023-12-15T14:42:04,668   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2023-12-15T14:42:04,670   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2023-12-15T14:42:04,672   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2023-12-15T14:42:04,673   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2023-12-15T14:42:04,678   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2023-12-15T14:42:04,683   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2023-12-15T14:42:04,778   adding 'moleculekit/fileformats/xtc/trr.c'
2023-12-15T14:42:04,790   adding 'moleculekit/fileformats/xtc/trr.pyx'
2023-12-15T14:42:04,791   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2023-12-15T14:42:04,792   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2023-12-15T14:42:04,883   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2023-12-15T14:42:04,892   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2023-12-15T14:42:04,894   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2023-12-15T14:42:04,896   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2023-12-15T14:42:04,897   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2023-12-15T14:42:04,900   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2023-12-15T14:42:04,901   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2023-12-15T14:42:04,903   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2023-12-15T14:42:04,904   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2023-12-15T14:42:04,906   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2023-12-15T14:42:04,913   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2023-12-15T14:42:04,915   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2023-12-15T14:42:04,917   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2023-12-15T14:42:04,919   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2023-12-15T14:42:04,921   adding 'moleculekit/interactions/__init__.py'
2023-12-15T14:42:05,201   adding 'moleculekit/interactions/cationpi.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:05,467   adding 'moleculekit/interactions/hbonds.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:05,478   adding 'moleculekit/interactions/interactions.py'
2023-12-15T14:42:05,757   adding 'moleculekit/interactions/pipi.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:06,042   adding 'moleculekit/interactions/sigmahole.cpython-311-arm-linux-gnueabihf.so'
2023-12-15T14:42:06,146   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-12-15T14:42:06,155   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-12-15T14:42:06,245   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-12-15T14:42:06,254   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-12-15T14:42:06,346   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-12-15T14:42:06,355   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-12-15T14:42:06,446   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-12-15T14:42:06,455   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-12-15T14:42:06,541   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-12-15T14:42:06,550   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-12-15T14:42:06,551   adding 'moleculekit/pdbx/__init__.py'
2023-12-15T14:42:06,555   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-12-15T14:42:06,558   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-12-15T14:42:06,560   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-12-15T14:42:06,561   adding 'moleculekit/pdbx/reader/__init__.py'
2023-12-15T14:42:06,563   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-12-15T14:42:06,565   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-12-15T14:42:06,566   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-12-15T14:42:06,567   adding 'moleculekit/pdbx/tests/__init__.py'
2023-12-15T14:42:06,569   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-12-15T14:42:06,570   adding 'moleculekit/pdbx/writer/__init__.py'
2023-12-15T14:42:06,572   adding 'moleculekit/ply/__init__.py'
2023-12-15T14:42:06,576   adding 'moleculekit/ply/lex.py'
2023-12-15T14:42:06,588   adding 'moleculekit/ply/yacc.py'
2023-12-15T14:42:06,590   adding 'moleculekit/projections/__init__.py'
2023-12-15T14:42:06,592   adding 'moleculekit/projections/metriccoordinate.py'
2023-12-15T14:42:06,598   adding 'moleculekit/projections/metricdihedral.py'
2023-12-15T14:42:06,602   adding 'moleculekit/projections/metricdistance.py'
2023-12-15T14:42:06,604   adding 'moleculekit/projections/metricfluctuation.py'
2023-12-15T14:42:06,606   adding 'moleculekit/projections/metricgyration.py'
2023-12-15T14:42:06,609   adding 'moleculekit/projections/metricplumed2.py'
2023-12-15T14:42:06,611   adding 'moleculekit/projections/metricrmsd.py'
2023-12-15T14:42:06,613   adding 'moleculekit/projections/metricsasa.py'
2023-12-15T14:42:06,615   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-12-15T14:42:06,616   adding 'moleculekit/projections/metricshell.py'
2023-12-15T14:42:06,618   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-12-15T14:42:06,619   adding 'moleculekit/projections/metrictmscore.py'
2023-12-15T14:42:06,621   adding 'moleculekit/projections/projection.py'
2023-12-15T14:42:06,622   adding 'moleculekit/projections/util.py'
2023-12-15T14:42:06,624   adding 'moleculekit/share/ALA.cif'
2023-12-15T14:42:06,626   adding 'moleculekit/share/backbone.cif'
2023-12-15T14:42:07,937   adding 'moleculekit/share/opm_sequences.json'
2023-12-15T14:42:08,022   adding 'moleculekit/share/atomselect/atomselect.json'
2023-12-15T14:42:08,026   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-12-15T14:42:08,027   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-12-15T14:42:08,029   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-12-15T14:42:08,030   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-12-15T14:42:08,031   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-12-15T14:42:08,032   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-12-15T14:42:08,033   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-12-15T14:42:08,035   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-12-15T14:42:08,036   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-12-15T14:42:08,037   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-12-15T14:42:08,038   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-12-15T14:42:08,040   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-12-15T14:42:08,041   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-12-15T14:42:08,042   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-12-15T14:42:08,043   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-12-15T14:42:08,044   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-12-15T14:42:08,046   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-12-15T14:42:08,047   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-12-15T14:42:08,048   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-12-15T14:42:08,049   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-12-15T14:42:08,051   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-12-15T14:42:08,052   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-12-15T14:42:08,053   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-12-15T14:42:08,055   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-12-15T14:42:08,056   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-12-15T14:42:08,057   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-12-15T14:42:08,059   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-12-15T14:42:08,060   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-12-15T14:42:08,061   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-12-15T14:42:08,062   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-12-15T14:42:08,064   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-12-15T14:42:08,065   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-12-15T14:42:08,066   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-12-15T14:42:08,067   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-12-15T14:42:08,069   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-12-15T14:42:08,070   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-12-15T14:42:08,071   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-12-15T14:42:08,072   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-12-15T14:42:08,074   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-12-15T14:42:08,075   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-12-15T14:42:08,076   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-12-15T14:42:08,077   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-12-15T14:42:08,079   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-12-15T14:42:08,080   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-12-15T14:42:08,081   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-12-15T14:42:08,082   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-12-15T14:42:08,083   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-12-15T14:42:08,085   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-12-15T14:42:08,086   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-12-15T14:42:08,087   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-12-15T14:42:08,088   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-12-15T14:42:08,089   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-12-15T14:42:08,091   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-12-15T14:42:08,092   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-12-15T14:42:08,093   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-12-15T14:42:08,094   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-12-15T14:42:08,095   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-12-15T14:42:08,097   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-12-15T14:42:08,098   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-12-15T14:42:08,099   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-12-15T14:42:08,100   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-12-15T14:42:08,102   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-12-15T14:42:08,103   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-12-15T14:42:08,104   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-12-15T14:42:08,106   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-12-15T14:42:08,107   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-12-15T14:42:08,108   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-12-15T14:42:08,110   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-12-15T14:42:08,111   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-12-15T14:42:08,112   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-12-15T14:42:08,114   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-12-15T14:42:08,115   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-12-15T14:42:08,116   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-12-15T14:42:08,117   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-12-15T14:42:08,119   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-12-15T14:42:08,120   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-12-15T14:42:08,121   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-12-15T14:42:08,122   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-12-15T14:42:08,124   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-12-15T14:42:08,125   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-12-15T14:42:08,126   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-12-15T14:42:08,127   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-12-15T14:42:08,129   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-12-15T14:42:08,130   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-12-15T14:42:08,131   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-12-15T14:42:08,133   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-12-15T14:42:08,135   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-12-15T14:42:08,136   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-12-15T14:42:08,137   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-12-15T14:42:08,139   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-12-15T14:42:08,140   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-12-15T14:42:08,141   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-12-15T14:42:08,143   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-12-15T14:42:08,144   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-12-15T14:42:08,145   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-12-15T14:42:08,146   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-12-15T14:42:08,147   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-12-15T14:42:08,149   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-12-15T14:42:08,150   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-12-15T14:42:08,151   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-12-15T14:42:08,153   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-12-15T14:42:08,154   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-12-15T14:42:08,155   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-12-15T14:42:08,156   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-12-15T14:42:08,158   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-12-15T14:42:08,159   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-12-15T14:42:08,160   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-12-15T14:42:08,162   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-12-15T14:42:08,163   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-12-15T14:42:08,164   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-12-15T14:42:08,166   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-12-15T14:42:08,167   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-12-15T14:42:08,168   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-12-15T14:42:08,170   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-12-15T14:42:08,171   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-12-15T14:42:08,172   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-12-15T14:42:08,173   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-12-15T14:42:08,175   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-12-15T14:42:08,176   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-12-15T14:42:08,177   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-12-15T14:42:08,178   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-12-15T14:42:08,179   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-12-15T14:42:08,181   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-12-15T14:42:08,182   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-12-15T14:42:08,184   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-12-15T14:42:08,185   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-12-15T14:42:08,186   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-12-15T14:42:08,187   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-12-15T14:42:08,188   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-12-15T14:42:08,190   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-12-15T14:42:08,191   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-12-15T14:42:08,192   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-12-15T14:42:08,194   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-12-15T14:42:08,195   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-12-15T14:42:08,197   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-12-15T14:42:08,199   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-12-15T14:42:08,200   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-12-15T14:42:08,202   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-12-15T14:42:08,203   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-12-15T14:42:08,204   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-12-15T14:42:08,205   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-12-15T14:42:08,206   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-12-15T14:42:08,208   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-12-15T14:42:08,209   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-12-15T14:42:08,210   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-12-15T14:42:08,211   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-12-15T14:42:08,213   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-12-15T14:42:08,214   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-12-15T14:42:08,215   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-12-15T14:42:08,216   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-12-15T14:42:08,217   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-12-15T14:42:08,218   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-12-15T14:42:08,220   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-12-15T14:42:08,221   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-12-15T14:42:08,223   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-12-15T14:42:08,224   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-12-15T14:42:08,225   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-12-15T14:42:08,226   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-12-15T14:42:08,227   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-12-15T14:42:08,229   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-12-15T14:42:08,230   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-12-15T14:42:08,231   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-12-15T14:42:08,233   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-12-15T14:42:08,234   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-12-15T14:42:08,235   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-12-15T14:42:08,236   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-12-15T14:42:08,237   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-12-15T14:42:08,239   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-12-15T14:42:08,240   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-12-15T14:42:08,241   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-12-15T14:42:08,243   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-12-15T14:42:08,244   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-12-15T14:42:08,245   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-12-15T14:42:08,246   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-12-15T14:42:08,248   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-12-15T14:42:08,249   adding 'moleculekit/smallmol/__init__.py'
2023-12-15T14:42:08,254   adding 'moleculekit/smallmol/smallmol.py'
2023-12-15T14:42:08,257   adding 'moleculekit/smallmol/smallmollib.py'
2023-12-15T14:42:08,259   adding 'moleculekit/smallmol/test_smallmol.py'
2023-12-15T14:42:08,260   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-12-15T14:42:08,262   adding 'moleculekit/smallmol/util.py'
2023-12-15T14:42:08,264   adding 'moleculekit/smallmol/tools/__init__.py'
2023-12-15T14:42:08,266   adding 'moleculekit/smallmol/tools/clustering.py'
2023-12-15T14:42:08,267   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-12-15T14:42:08,269   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-12-15T14:42:08,359   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-12-15T14:42:08,368   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-12-15T14:42:08,369   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-12-15T14:42:08,371   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-12-15T14:42:08,389   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-12-15T14:42:08,392   adding 'moleculekit/tools/__init__.py'
2023-12-15T14:42:08,394   adding 'moleculekit/tools/atomtyper.py'
2023-12-15T14:42:08,396   adding 'moleculekit/tools/autosegment.py'
2023-12-15T14:42:08,398   adding 'moleculekit/tools/crystalpacking.py'
2023-12-15T14:42:08,402   adding 'moleculekit/tools/detect.py'
2023-12-15T14:42:08,404   adding 'moleculekit/tools/docking.py'
2023-12-15T14:42:08,406   adding 'moleculekit/tools/graphalignment.py'
2023-12-15T14:42:08,408   adding 'moleculekit/tools/hhblitsprofile.py'
2023-12-15T14:42:08,409   adding 'moleculekit/tools/modelling.py'
2023-12-15T14:42:08,411   adding 'moleculekit/tools/moleculechecks.py'
2023-12-15T14:42:08,418   adding 'moleculekit/tools/preparation.py'
2023-12-15T14:42:08,420   adding 'moleculekit/tools/preparation_customres.py'
2023-12-15T14:42:08,422   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-12-15T14:42:08,425   adding 'moleculekit/tools/voxeldescriptors.py'
2023-12-15T14:42:08,427   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-12-15T14:42:08,429   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-12-15T14:42:08,523   adding 'moleculekit/wrapping/wrapping.cpp'
2023-12-15T14:42:08,532   adding 'moleculekit/wrapping/wrapping.pyx'
2023-12-15T14:42:08,534   adding 'moleculekit-1.8.17.dist-info/LICENSE'
2023-12-15T14:42:08,536   adding 'moleculekit-1.8.17.dist-info/METADATA'
2023-12-15T14:42:08,537   adding 'moleculekit-1.8.17.dist-info/WHEEL'
2023-12-15T14:42:08,538   adding 'moleculekit-1.8.17.dist-info/top_level.txt'
2023-12-15T14:42:08,543   adding 'moleculekit-1.8.17.dist-info/RECORD'
2023-12-15T14:42:08,728   removing build/bdist.linux-armv7l/wheel
2023-12-15T14:42:09,025   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-12-15T14:42:09,305   Created wheel for moleculekit: filename=moleculekit-1.8.17-cp311-cp311-linux_armv7l.whl size=14582164 sha256=15f81de7a2be989eb8a4355f7a80e7bab42b90d292983fcadc050212e84b6ae8
2023-12-15T14:42:09,306   Stored in directory: /tmp/pip-ephem-wheel-cache-cbrfnyzg/wheels/95/f5/58/c6e9dce8034d6d07889089b107aabb8b6685de1a828612c757
2023-12-15T14:42:09,331 Successfully built moleculekit
2023-12-15T14:42:09,655 Removed build tracker: '/tmp/pip-build-tracker-tx7m9qp_'