2023-12-15T16:42:30,401 Created temporary directory: /tmp/pip-build-tracker-84wfp4fu
2023-12-15T16:42:30,403 Initialized build tracking at /tmp/pip-build-tracker-84wfp4fu
2023-12-15T16:42:30,403 Created build tracker: /tmp/pip-build-tracker-84wfp4fu
2023-12-15T16:42:30,403 Entered build tracker: /tmp/pip-build-tracker-84wfp4fu
2023-12-15T16:42:30,404 Created temporary directory: /tmp/pip-wheel-v8vz9e6g
2023-12-15T16:42:30,408 Created temporary directory: /tmp/pip-ephem-wheel-cache-_5_9es4p
2023-12-15T16:42:30,434 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T16:42:30,437 2 location(s) to search for versions of moleculekit:
2023-12-15T16:42:30,437 * https://pypi.org/simple/moleculekit/
2023-12-15T16:42:30,437 * https://www.piwheels.org/simple/moleculekit/
2023-12-15T16:42:30,438 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-12-15T16:42:30,438 Getting page https://pypi.org/simple/moleculekit/
2023-12-15T16:42:30,440 Found index url https://pypi.org/simple/
2023-12-15T16:42:30,496 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-12-15T16:42:30,536   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,537   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-12-15T16:42:30,537   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,537   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-12-15T16:42:30,537   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,538   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-12-15T16:42:30,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,538   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-12-15T16:42:30,538   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,539   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-12-15T16:42:30,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,539   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-12-15T16:42:30,539   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,540   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-12-15T16:42:30,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,540   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-12-15T16:42:30,540   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,541   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-12-15T16:42:30,541   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,541   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-12-15T16:42:30,541   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,541   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-12-15T16:42:30,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,542   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-12-15T16:42:30,542   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,542   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-12-15T16:42:30,543   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,543   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-12-15T16:42:30,543   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,543   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-12-15T16:42:30,544   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,544   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-12-15T16:42:30,544   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,544   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-12-15T16:42:30,545   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,545   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-12-15T16:42:30,545   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,545   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-12-15T16:42:30,545   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,546   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-12-15T16:42:30,546   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,546   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-12-15T16:42:30,547   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,547   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-12-15T16:42:30,547   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,547   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-12-15T16:42:30,548   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,548   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-12-15T16:42:30,548   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,548   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2023-12-15T16:42:30,548   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,549   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-12-15T16:42:30,549   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,549   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-12-15T16:42:30,549   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,550   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2023-12-15T16:42:30,550   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,550   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2023-12-15T16:42:30,550   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,551   Found link https://files.pythonhosted.org/packages/a6/68/1eb4fb904763839ec4df4eab490702bd7245a6848ebfb693b165d5fbb153/moleculekit-0.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.7
2023-12-15T16:42:30,551   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,551   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2023-12-15T16:42:30,551   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-12-15T16:42:30,551   Found link https://files.pythonhosted.org/packages/bd/ad/aa7f2c7343506e17f61f2c4223dc912d4f099fdcc3e1736f393c9c31e118/moleculekit-0.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.9
2023-12-15T16:42:30,552   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/40/39/e7c3ea68289cf49ac58a53a55de11c71471a26c55268ce2a11dd3d0f4b1d/moleculekit-0.3.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-12-15T16:42:30,584   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
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2023-12-15T16:42:30,594   Found link https://files.pythonhosted.org/packages/4a/13/dd6711d592d27e604c48830300f5596aafa1bbc479dc5eb49ed9797085eb/moleculekit-1.7.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.2
2023-12-15T16:42:30,595   Found link https://files.pythonhosted.org/packages/c7/cb/205d8925276863e2892c2c1ae2747cd4834cd3f174521172670ce43b50b8/moleculekit-1.7.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.3
2023-12-15T16:42:30,595   Found link https://files.pythonhosted.org/packages/6f/9e/2bce5993679a3666fd12803b93bb9a4daa59922f0ecdd26e9726df5d7f73/moleculekit-1.7.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.4
2023-12-15T16:42:30,596   Found link https://files.pythonhosted.org/packages/fa/63/993d55964a5afc9417ca31ab06a7d08f10b8fb38c63157bef0f350b4bb49/moleculekit-1.7.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.6
2023-12-15T16:42:30,597   Found link https://files.pythonhosted.org/packages/9b/3d/351d6444550ae455f20139e1d71ab138449c75b4a9782ac831dc9c6daa76/moleculekit-1.7.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.7
2023-12-15T16:42:30,597   Found link https://files.pythonhosted.org/packages/1b/7a/80d740239c506d7eea7cdba7576c503012556338861c10d5d2908e1912f7/moleculekit-1.7.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.8
2023-12-15T16:42:30,598   Found link https://files.pythonhosted.org/packages/05/e0/64dd3801f9b9cd011f8093d85201df3b259bab3502b87b6e37edadea0f21/moleculekit-1.7.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.9
2023-12-15T16:42:30,598   Found link https://files.pythonhosted.org/packages/0e/fd/650680f6dcf164b179c8a334c56fc7ba97d71519330f03bdc485307b6a0d/moleculekit-1.7.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.10
2023-12-15T16:42:30,599   Found link https://files.pythonhosted.org/packages/37/05/3105db0d4a63b49d0f4534b5e9d6a488b96b83b3aac621224338f3a6aa6b/moleculekit-1.7.12.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.12
2023-12-15T16:42:30,599   Found link https://files.pythonhosted.org/packages/08/ec/48d8122fea93c59592ae22dc29f16496087cdf31064793e6da173fcf2e36/moleculekit-1.7.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.13
2023-12-15T16:42:30,600   Found link https://files.pythonhosted.org/packages/46/79/442f4846c44e99a4e5d61b09e65cb57ec69b24ae4bf7e8b704f125238c6c/moleculekit-1.7.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.14
2023-12-15T16:42:30,600   Found link https://files.pythonhosted.org/packages/fa/fd/aa5c1911df4cf3bee9575fbc1cdbd39bcb1d9164e77c772fa938be672cc0/moleculekit-1.7.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.15
2023-12-15T16:42:30,601   Found link https://files.pythonhosted.org/packages/38/fe/74b265e75deb09844035690d506614163cd262a2d6bc7c83b4e2f28d4bb9/moleculekit-1.7.16.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.16
2023-12-15T16:42:30,601   Found link https://files.pythonhosted.org/packages/8b/2f/56c308933a9652bc40c41a53d57509ef38cc3c21d55b6f5570c2d9a865ed/moleculekit-1.7.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.7.17
2023-12-15T16:42:30,602   Found link https://files.pythonhosted.org/packages/96/a3/11b655506ce842ebea0b6d4c86883a538095687cb7bc9c4a179420971bd7/moleculekit-1.8.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.1
2023-12-15T16:42:30,602   Found link https://files.pythonhosted.org/packages/9d/d3/ead35117c0f3b3b1be847d561ff31bf59dfde0c49982bff106a3cc3876f0/moleculekit-1.8.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.2
2023-12-15T16:42:30,603   Found link https://files.pythonhosted.org/packages/23/e8/3ebe2bfb667296b1c79d4e59fdfb487116bfd8bec579ca242eec7ecad0c2/moleculekit-1.8.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.3
2023-12-15T16:42:30,604   Found link https://files.pythonhosted.org/packages/6f/4d/4a0e90a65d79829ae0bec8d857de2f8b7e18b6d60e05daa99cdbed0061c0/moleculekit-1.8.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.4
2023-12-15T16:42:30,604   Found link https://files.pythonhosted.org/packages/15/bb/f88884d7710aeb6290c69f180df912ce73beb4975ceea9f58aa28250737c/moleculekit-1.8.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.5
2023-12-15T16:42:30,605   Found link https://files.pythonhosted.org/packages/e4/a8/ef9f25e6e42436ceaecfd8bb0aadbf40855976374a46b8cf8d55000fa0a8/moleculekit-1.8.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.6
2023-12-15T16:42:30,605   Found link https://files.pythonhosted.org/packages/67/c5/ed682f5ea9a16915b98612e0b274b50303bb912ccb71ab106247e01be8c2/moleculekit-1.8.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.7
2023-12-15T16:42:30,606   Found link https://files.pythonhosted.org/packages/23/cd/efd06d75f4a0e866e23156ca3c771c99a22bcfb5f2d1b0f42f853b9cfd27/moleculekit-1.8.10.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.10
2023-12-15T16:42:30,606   Found link https://files.pythonhosted.org/packages/d2/1a/935247798d3097c5093e33b026729b2e218fefd40f58c4b8b8bd3fcf93b4/moleculekit-1.8.13.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.13
2023-12-15T16:42:30,607   Found link https://files.pythonhosted.org/packages/b0/1c/de17759f3cbae5b6b06b60242724a93570b332f657fdeff9e582b6bda391/moleculekit-1.8.14.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.14
2023-12-15T16:42:30,607   Found link https://files.pythonhosted.org/packages/20/a3/7476dceb769dd7bb318d84590a372f1974e978cefb204da16f2b4d99a34e/moleculekit-1.8.15.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.15
2023-12-15T16:42:30,608   Found link https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.8.17
2023-12-15T16:42:30,608 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-12-15T16:42:30,609 Getting page https://www.piwheels.org/simple/moleculekit/
2023-12-15T16:42:30,610 Found index url https://www.piwheels.org/simple/
2023-12-15T16:42:30,691 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
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2023-12-15T16:42:30,800   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv6l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,800   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,800   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,801   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,802   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,802   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,802   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,802   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,802   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,803   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,804   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,805   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,806   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,807   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,808   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,809   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,810   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,811   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,812   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T16:42:30,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T16:42:30,814   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,815   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,816   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,817   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv6l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp311-cp311-linux_armv7l.whl#sha256=901c091adc4fc8b89c9de8f139d92aeffbfb6dc91799f2f9019f61646044ddd7 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,818   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,819   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,820   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,821   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2023-12-15T16:42:30,822   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
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2023-12-15T16:42:30,829 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-12-15T16:42:30,829 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-12-15T16:42:30,871 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-12-15T16:42:30,889 Collecting moleculekit==1.8.17
2023-12-15T16:42:30,891   Created temporary directory: /tmp/pip-unpack-pym3hwpn
2023-12-15T16:42:31,017   Downloading moleculekit-1.8.17.tar.gz (6.7 MB)
2023-12-15T16:42:33,995   Added moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz to build tracker '/tmp/pip-build-tracker-84wfp4fu'
2023-12-15T16:42:34,003   Created temporary directory: /tmp/pip-build-env-67j4cao8
2023-12-15T16:42:34,013   Installing build dependencies: started
2023-12-15T16:42:34,014   Running command pip subprocess to install build dependencies
2023-12-15T16:42:35,424   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2023-12-15T16:42:35,956   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T16:42:37,380   Collecting setuptools
2023-12-15T16:42:37,397     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.2-py3-none-any.whl (819 kB)
2023-12-15T16:42:38,353   Collecting numpy>=1.18.5
2023-12-15T16:42:38,370     Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp39-cp39-linux_armv7l.whl (19.4 MB)
2023-12-15T16:42:40,129   Collecting Cython>=0.29.21
2023-12-15T16:42:40,147     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.6-cp39-cp39-linux_armv7l.whl (10.7 MB)
2023-12-15T16:42:40,529   Collecting toml
2023-12-15T16:42:40,546     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-12-15T16:42:40,723   Collecting versioneer==0.28 (from versioneer[toml]==0.28)
2023-12-15T16:42:40,739     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.28-py3-none-any.whl (45 kB)
2023-12-15T16:42:40,870   Collecting tomli (from versioneer[toml]==0.28)
2023-12-15T16:42:40,886     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-12-15T16:42:42,671   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-12-15T16:42:42,705     Creating /tmp/pip-build-env-67j4cao8/overlay/bin
2023-12-15T16:42:42,708     changing mode of /tmp/pip-build-env-67j4cao8/overlay/bin/versioneer to 755
2023-12-15T16:42:52,557     changing mode of /tmp/pip-build-env-67j4cao8/overlay/bin/f2py to 755
2023-12-15T16:42:56,036     changing mode of /tmp/pip-build-env-67j4cao8/overlay/bin/cygdb to 755
2023-12-15T16:42:56,039     changing mode of /tmp/pip-build-env-67j4cao8/overlay/bin/cython to 755
2023-12-15T16:42:56,041     changing mode of /tmp/pip-build-env-67j4cao8/overlay/bin/cythonize to 755
2023-12-15T16:42:56,068   ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
2023-12-15T16:42:56,068   scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.2 which is incompatible.
2023-12-15T16:42:56,069   Successfully installed Cython-3.0.6 numpy-1.26.2 setuptools-69.0.2 toml-0.10.2 tomli-2.0.1 versioneer-0.28
2023-12-15T16:42:56,669   Installing build dependencies: finished with status 'done'
2023-12-15T16:42:56,674   Getting requirements to build wheel: started
2023-12-15T16:42:56,675   Running command Getting requirements to build wheel
2023-12-15T16:43:31,550   warning: moleculekit/wrapping/wrapping.pyx:47:4: Unreachable code
2023-12-15T16:43:40,358   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,358   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,359   Compiling moleculekit/fileformats/xtc/xtc.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-12-15T16:43:40,360   Compiling moleculekit/fileformats/xtc/trr.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-12-15T16:43:40,360   Compiling moleculekit/fileformats/dcd/dcd.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-12-15T16:43:40,360   Compiling moleculekit/fileformats/binpos/binpos.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-12-15T16:43:40,360   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-12-15T16:43:40,361   [ 1/14] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2023-12-15T16:43:40,361   [ 2/14] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2023-12-15T16:43:40,361   [ 3/14] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-12-15T16:43:40,361   [ 4/14] Cythonizing moleculekit/fileformats/dcd/dcd.pyx
2023-12-15T16:43:40,361   [ 5/14] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-12-15T16:43:40,361   [ 6/14] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-12-15T16:43:40,362   [ 7/14] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-12-15T16:43:40,362   [ 8/14] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-12-15T16:43:40,362   [ 9/14] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-12-15T16:43:40,362   [10/14] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-12-15T16:43:40,362   [11/14] Cythonizing moleculekit/wrapping/wrapping.pyx
2023-12-15T16:43:40,362   [12/14] Cythonizing moleculekit/fileformats/binpos/binpos.pyx
2023-12-15T16:43:40,363   [13/14] Cythonizing moleculekit/fileformats/xtc/trr.pyx
2023-12-15T16:43:40,363   [14/14] Cythonizing moleculekit/fileformats/xtc/xtc.pyx
2023-12-15T16:43:40,644   running egg_info
2023-12-15T16:43:40,651   writing moleculekit.egg-info/PKG-INFO
2023-12-15T16:43:40,654   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-15T16:43:40,656   writing requirements to moleculekit.egg-info/requires.txt
2023-12-15T16:43:40,658   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-15T16:43:40,690   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:40,690   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:40,690   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:40,691   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,981   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,982   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,983   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,984   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,984   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,984   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,984   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,984   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,986   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,986   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,986   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,986   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,986   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,987   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,987   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,987   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,987   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,987   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,988   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,988   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,988   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,989   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,989   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:48,996   reading manifest file '/tmp/pip-modern-metadata-i0jsgaeq/moleculekit.egg-info/SOURCES.txt'
2023-12-15T16:43:48,998   reading manifest template 'MANIFEST.in'
2023-12-15T16:43:49,259   no previously-included directories found matching 'moleculekit/test-data'
2023-12-15T16:43:49,260   no previously-included directories found matching 'moleculekit/tests'
2023-12-15T16:43:49,261   no previously-included directories found matching 'package'
2023-12-15T16:43:49,261   adding license file 'LICENSE'
2023-12-15T16:43:49,274   writing manifest file '/tmp/pip-modern-metadata-i0jsgaeq/moleculekit.egg-info/SOURCES.txt'
2023-12-15T16:43:49,284   creating '/tmp/pip-modern-metadata-i0jsgaeq/moleculekit-1.8.17.dist-info'
2023-12-15T16:43:49,483   Preparing metadata (pyproject.toml): finished with status 'done'
2023-12-15T16:43:49,489   Source in /tmp/pip-wheel-v8vz9e6g/moleculekit_0b0252c8649940f1bca5e69487da57e3 has version 1.8.17, which satisfies requirement moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz
2023-12-15T16:43:49,490   Removed moleculekit==1.8.17 from https://files.pythonhosted.org/packages/ce/8d/e060616d8e4e03f56d544939f3ccea7f3d665038a66bbf57ba0bcd1f4711/moleculekit-1.8.17.tar.gz from build tracker '/tmp/pip-build-tracker-84wfp4fu'
2023-12-15T16:43:49,496 Created temporary directory: /tmp/pip-unpack-odgxej8f
2023-12-15T16:43:49,497 Created temporary directory: /tmp/pip-unpack-os7_wl8r
2023-12-15T16:43:49,505 Building wheels for collected packages: moleculekit
2023-12-15T16:43:49,509   Created temporary directory: /tmp/pip-wheel-q_c0linp
2023-12-15T16:43:49,509   Destination directory: /tmp/pip-wheel-q_c0linp
2023-12-15T16:43:49,512   Building wheel for moleculekit (pyproject.toml): started
2023-12-15T16:43:49,513   Running command Building wheel for moleculekit (pyproject.toml)
2023-12-15T16:43:52,018   running bdist_wheel
2023-12-15T16:43:52,035   running build
2023-12-15T16:43:52,035   running build_py
2023-12-15T16:43:52,043   creating build
2023-12-15T16:43:52,043   creating build/lib.linux-armv7l-cpython-39
2023-12-15T16:43:52,044   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,045   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,048   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,050   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,052   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,054   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,055   copying moleculekit/distance.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,057   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,059   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,060   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,062   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,064   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,069   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,071   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,073   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,074   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,076   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,078   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,080   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,083   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,088   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,090   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,093   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,094   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,097   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,099   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,101   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,103   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,105   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,108   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,110   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,113   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,114   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,116   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,119   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,121   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,124   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,126   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-12-15T16:43:52,128   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-15T16:43:52,129   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-15T16:43:52,133   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-15T16:43:52,134   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-12-15T16:43:52,138   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-15T16:43:52,139   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-15T16:43:52,141   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-15T16:43:52,144   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-15T16:43:52,144   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-15T16:43:52,146   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-15T16:43:52,148   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-15T16:43:52,150   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-12-15T16:43:52,153   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-12-15T16:43:52,154   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-12-15T16:43:52,156   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,157   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,160   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,162   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,164   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,166   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,168   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-12-15T16:43:52,172   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2023-12-15T16:43:52,173   copying moleculekit/fileformats/utils.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2023-12-15T16:43:52,175   copying moleculekit/fileformats/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2023-12-15T16:43:52,176   copying moleculekit/fileformats/netcdf.py -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats
2023-12-15T16:43:52,180   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,181   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,184   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,186   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,189   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,191   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,193   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,195   copying moleculekit/tools/modelling.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,198   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,200   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,201   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,204   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,206   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,209   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,211   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-12-15T16:43:52,214   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-15T16:43:52,214   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-15T16:43:52,217   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-15T16:43:52,218   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-15T16:43:52,220   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-12-15T16:43:52,222   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-15T16:43:52,223   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-15T16:43:52,226   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-15T16:43:52,228   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-15T16:43:52,230   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-12-15T16:43:52,233   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-15T16:43:52,234   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-15T16:43:52,235   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-12-15T16:43:52,238   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-15T16:43:52,239   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-15T16:43:52,241   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-15T16:43:52,243   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-15T16:43:52,245   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-12-15T16:43:52,247   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-15T16:43:52,248   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-15T16:43:52,250   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-12-15T16:43:52,251   running egg_info
2023-12-15T16:43:52,257   writing moleculekit.egg-info/PKG-INFO
2023-12-15T16:43:52,260   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-12-15T16:43:52,262   writing requirements to moleculekit.egg-info/requires.txt
2023-12-15T16:43:52,263   writing top-level names to moleculekit.egg-info/top_level.txt
2023-12-15T16:43:52,281   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,281   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,282   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,283   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,284   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,285   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,286   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,287   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,288   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,290   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,290   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,290   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,290   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,290   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,291   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,291   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,291   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,291   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,292   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,292   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,292   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,293   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,293   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,293   dependency /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2023-12-15T16:43:52,299   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T16:43:52,308   reading manifest template 'MANIFEST.in'
2023-12-15T16:43:52,558   no previously-included directories found matching 'moleculekit/test-data'
2023-12-15T16:43:52,559   no previously-included directories found matching 'moleculekit/tests'
2023-12-15T16:43:52,561   no previously-included directories found matching 'package'
2023-12-15T16:43:52,561   adding license file 'LICENSE'
2023-12-15T16:43:52,579   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-12-15T16:43:52,589   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.atomselect_utils' is absent from the `packages` configuration.
2023-12-15T16:43:52,590   !!

2023-12-15T16:43:52,590           ********************************************************************************
2023-12-15T16:43:52,590           ############################
2023-12-15T16:43:52,590           # Package would be ignored #
2023-12-15T16:43:52,590           ############################
2023-12-15T16:43:52,590           Python recognizes 'moleculekit.atomselect_utils' as an importable package[^1],
2023-12-15T16:43:52,591           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,591           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,591           package, please make sure that 'moleculekit.atomselect_utils' is explicitly added
2023-12-15T16:43:52,591           to the `packages` configuration field.

2023-12-15T16:43:52,591           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,591           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,592           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,592           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,592           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,592           If you don't want 'moleculekit.atomselect_utils' to be distributed and are
2023-12-15T16:43:52,592           already explicitly excluding 'moleculekit.atomselect_utils' via
2023-12-15T16:43:52,593           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,593           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,593           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,593           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,593           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,594           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,594                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,594                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,594                 directory, all directories are treated like packages.
2023-12-15T16:43:52,594           ********************************************************************************

2023-12-15T16:43:52,594   !!
2023-12-15T16:43:52,594     check.warn(importable)
2023-12-15T16:43:52,595   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.bondguesser_utils' is absent from the `packages` configuration.
2023-12-15T16:43:52,595   !!

2023-12-15T16:43:52,595           ********************************************************************************
2023-12-15T16:43:52,595           ############################
2023-12-15T16:43:52,595           # Package would be ignored #
2023-12-15T16:43:52,595           ############################
2023-12-15T16:43:52,595           Python recognizes 'moleculekit.bondguesser_utils' as an importable package[^1],
2023-12-15T16:43:52,596           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,596           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,596           package, please make sure that 'moleculekit.bondguesser_utils' is explicitly added
2023-12-15T16:43:52,596           to the `packages` configuration field.

2023-12-15T16:43:52,596           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,596           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,596           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,597           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,597           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,597           If you don't want 'moleculekit.bondguesser_utils' to be distributed and are
2023-12-15T16:43:52,597           already explicitly excluding 'moleculekit.bondguesser_utils' via
2023-12-15T16:43:52,597           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,597           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,598           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,598           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,598           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,598           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,598                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,599                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,599                 directory, all directories are treated like packages.
2023-12-15T16:43:52,599           ********************************************************************************

2023-12-15T16:43:52,599   !!
2023-12-15T16:43:52,599     check.warn(importable)
2023-12-15T16:43:52,599   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.distance_utils' is absent from the `packages` configuration.
2023-12-15T16:43:52,599   !!

2023-12-15T16:43:52,600           ********************************************************************************
2023-12-15T16:43:52,600           ############################
2023-12-15T16:43:52,600           # Package would be ignored #
2023-12-15T16:43:52,600           ############################
2023-12-15T16:43:52,600           Python recognizes 'moleculekit.distance_utils' as an importable package[^1],
2023-12-15T16:43:52,600           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,600           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,600           package, please make sure that 'moleculekit.distance_utils' is explicitly added
2023-12-15T16:43:52,601           to the `packages` configuration field.

2023-12-15T16:43:52,601           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,601           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,601           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,601           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,601           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,602           If you don't want 'moleculekit.distance_utils' to be distributed and are
2023-12-15T16:43:52,602           already explicitly excluding 'moleculekit.distance_utils' via
2023-12-15T16:43:52,602           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,602           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,602           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,602           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,602           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,603           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,603                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,603                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,603                 directory, all directories are treated like packages.
2023-12-15T16:43:52,603           ********************************************************************************

2023-12-15T16:43:52,603   !!
2023-12-15T16:43:52,604     check.warn(importable)
2023-12-15T16:43:52,604   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos' is absent from the `packages` configuration.
2023-12-15T16:43:52,604   !!

2023-12-15T16:43:52,604           ********************************************************************************
2023-12-15T16:43:52,604           ############################
2023-12-15T16:43:52,604           # Package would be ignored #
2023-12-15T16:43:52,604           ############################
2023-12-15T16:43:52,604           Python recognizes 'moleculekit.fileformats.binpos' as an importable package[^1],
2023-12-15T16:43:52,605           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,605           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,605           package, please make sure that 'moleculekit.fileformats.binpos' is explicitly added
2023-12-15T16:43:52,605           to the `packages` configuration field.

2023-12-15T16:43:52,605           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,605           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,605           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,606           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,606           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,606           If you don't want 'moleculekit.fileformats.binpos' to be distributed and are
2023-12-15T16:43:52,606           already explicitly excluding 'moleculekit.fileformats.binpos' via
2023-12-15T16:43:52,606           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,606           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,607           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,607           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,607           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,607           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,607                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,607                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,608                 directory, all directories are treated like packages.
2023-12-15T16:43:52,608           ********************************************************************************

2023-12-15T16:43:52,608   !!
2023-12-15T16:43:52,608     check.warn(importable)
2023-12-15T16:43:52,608   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.include' is absent from the `packages` configuration.
2023-12-15T16:43:52,608   !!

2023-12-15T16:43:52,608           ********************************************************************************
2023-12-15T16:43:52,609           ############################
2023-12-15T16:43:52,609           # Package would be ignored #
2023-12-15T16:43:52,609           ############################
2023-12-15T16:43:52,609           Python recognizes 'moleculekit.fileformats.binpos.include' as an importable package[^1],
2023-12-15T16:43:52,609           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,609           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,609           package, please make sure that 'moleculekit.fileformats.binpos.include' is explicitly added
2023-12-15T16:43:52,609           to the `packages` configuration field.

2023-12-15T16:43:52,610           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,610           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,610           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,610           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,610           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,610           If you don't want 'moleculekit.fileformats.binpos.include' to be distributed and are
2023-12-15T16:43:52,611           already explicitly excluding 'moleculekit.fileformats.binpos.include' via
2023-12-15T16:43:52,611           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,611           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,611           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,611           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,611           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,612           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,612                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,612                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,612                 directory, all directories are treated like packages.
2023-12-15T16:43:52,612           ********************************************************************************

2023-12-15T16:43:52,612   !!
2023-12-15T16:43:52,613     check.warn(importable)
2023-12-15T16:43:52,613   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.binpos.src' is absent from the `packages` configuration.
2023-12-15T16:43:52,613   !!

2023-12-15T16:43:52,613           ********************************************************************************
2023-12-15T16:43:52,613           ############################
2023-12-15T16:43:52,613           # Package would be ignored #
2023-12-15T16:43:52,613           ############################
2023-12-15T16:43:52,613           Python recognizes 'moleculekit.fileformats.binpos.src' as an importable package[^1],
2023-12-15T16:43:52,614           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,614           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,614           package, please make sure that 'moleculekit.fileformats.binpos.src' is explicitly added
2023-12-15T16:43:52,614           to the `packages` configuration field.

2023-12-15T16:43:52,614           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,614           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,614           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,615           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,615           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,615           If you don't want 'moleculekit.fileformats.binpos.src' to be distributed and are
2023-12-15T16:43:52,615           already explicitly excluding 'moleculekit.fileformats.binpos.src' via
2023-12-15T16:43:52,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,615           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,615           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,616           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,616           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,616           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,616                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,616                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,616                 directory, all directories are treated like packages.
2023-12-15T16:43:52,617           ********************************************************************************

2023-12-15T16:43:52,617   !!
2023-12-15T16:43:52,617     check.warn(importable)
2023-12-15T16:43:52,617   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd' is absent from the `packages` configuration.
2023-12-15T16:43:52,617   !!

2023-12-15T16:43:52,617           ********************************************************************************
2023-12-15T16:43:52,617           ############################
2023-12-15T16:43:52,618           # Package would be ignored #
2023-12-15T16:43:52,618           ############################
2023-12-15T16:43:52,618           Python recognizes 'moleculekit.fileformats.dcd' as an importable package[^1],
2023-12-15T16:43:52,618           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,618           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,618           package, please make sure that 'moleculekit.fileformats.dcd' is explicitly added
2023-12-15T16:43:52,618           to the `packages` configuration field.

2023-12-15T16:43:52,619           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,619           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,619           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,619           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,619           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,620           If you don't want 'moleculekit.fileformats.dcd' to be distributed and are
2023-12-15T16:43:52,620           already explicitly excluding 'moleculekit.fileformats.dcd' via
2023-12-15T16:43:52,620           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,620           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,620           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,620           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,621           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,621           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,621                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,621                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,621                 directory, all directories are treated like packages.
2023-12-15T16:43:52,621           ********************************************************************************

2023-12-15T16:43:52,621   !!
2023-12-15T16:43:52,622     check.warn(importable)
2023-12-15T16:43:52,622   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.include' is absent from the `packages` configuration.
2023-12-15T16:43:52,622   !!

2023-12-15T16:43:52,622           ********************************************************************************
2023-12-15T16:43:52,622           ############################
2023-12-15T16:43:52,622           # Package would be ignored #
2023-12-15T16:43:52,622           ############################
2023-12-15T16:43:52,622           Python recognizes 'moleculekit.fileformats.dcd.include' as an importable package[^1],
2023-12-15T16:43:52,623           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,623           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,623           package, please make sure that 'moleculekit.fileformats.dcd.include' is explicitly added
2023-12-15T16:43:52,623           to the `packages` configuration field.

2023-12-15T16:43:52,623           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,623           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,623           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,624           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,624           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,624           If you don't want 'moleculekit.fileformats.dcd.include' to be distributed and are
2023-12-15T16:43:52,624           already explicitly excluding 'moleculekit.fileformats.dcd.include' via
2023-12-15T16:43:52,624           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,624           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,624           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,625           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,625           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,625           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,625                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,625                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,626                 directory, all directories are treated like packages.
2023-12-15T16:43:52,626           ********************************************************************************

2023-12-15T16:43:52,626   !!
2023-12-15T16:43:52,626     check.warn(importable)
2023-12-15T16:43:52,626   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.dcd.src' is absent from the `packages` configuration.
2023-12-15T16:43:52,626   !!

2023-12-15T16:43:52,626           ********************************************************************************
2023-12-15T16:43:52,626           ############################
2023-12-15T16:43:52,627           # Package would be ignored #
2023-12-15T16:43:52,627           ############################
2023-12-15T16:43:52,627           Python recognizes 'moleculekit.fileformats.dcd.src' as an importable package[^1],
2023-12-15T16:43:52,627           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,627           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,627           package, please make sure that 'moleculekit.fileformats.dcd.src' is explicitly added
2023-12-15T16:43:52,627           to the `packages` configuration field.

2023-12-15T16:43:52,628           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,628           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,628           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,628           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,628           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,628           If you don't want 'moleculekit.fileformats.dcd.src' to be distributed and are
2023-12-15T16:43:52,628           already explicitly excluding 'moleculekit.fileformats.dcd.src' via
2023-12-15T16:43:52,629           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,629           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,629           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,629           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,629           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,630           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,630                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,630                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,630                 directory, all directories are treated like packages.
2023-12-15T16:43:52,630           ********************************************************************************

2023-12-15T16:43:52,630   !!
2023-12-15T16:43:52,630     check.warn(importable)
2023-12-15T16:43:52,631   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc' is absent from the `packages` configuration.
2023-12-15T16:43:52,631   !!

2023-12-15T16:43:52,631           ********************************************************************************
2023-12-15T16:43:52,631           ############################
2023-12-15T16:43:52,631           # Package would be ignored #
2023-12-15T16:43:52,631           ############################
2023-12-15T16:43:52,631           Python recognizes 'moleculekit.fileformats.xtc' as an importable package[^1],
2023-12-15T16:43:52,631           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,632           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,632           package, please make sure that 'moleculekit.fileformats.xtc' is explicitly added
2023-12-15T16:43:52,632           to the `packages` configuration field.

2023-12-15T16:43:52,632           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,632           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,632           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,632           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,633           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,633           If you don't want 'moleculekit.fileformats.xtc' to be distributed and are
2023-12-15T16:43:52,633           already explicitly excluding 'moleculekit.fileformats.xtc' via
2023-12-15T16:43:52,633           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,633           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,633           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,633           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,634           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,634           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,634                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,634                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,634                 directory, all directories are treated like packages.
2023-12-15T16:43:52,635           ********************************************************************************

2023-12-15T16:43:52,635   !!
2023-12-15T16:43:52,635     check.warn(importable)
2023-12-15T16:43:52,635   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.include' is absent from the `packages` configuration.
2023-12-15T16:43:52,635   !!

2023-12-15T16:43:52,636           ********************************************************************************
2023-12-15T16:43:52,636           ############################
2023-12-15T16:43:52,636           # Package would be ignored #
2023-12-15T16:43:52,636           ############################
2023-12-15T16:43:52,636           Python recognizes 'moleculekit.fileformats.xtc.include' as an importable package[^1],
2023-12-15T16:43:52,636           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,637           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,637           package, please make sure that 'moleculekit.fileformats.xtc.include' is explicitly added
2023-12-15T16:43:52,637           to the `packages` configuration field.

2023-12-15T16:43:52,637           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,637           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,637           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,638           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,638           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,638           If you don't want 'moleculekit.fileformats.xtc.include' to be distributed and are
2023-12-15T16:43:52,638           already explicitly excluding 'moleculekit.fileformats.xtc.include' via
2023-12-15T16:43:52,638           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,638           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,639           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,639           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,639           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,639           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,639                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,639                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,640                 directory, all directories are treated like packages.
2023-12-15T16:43:52,640           ********************************************************************************

2023-12-15T16:43:52,640   !!
2023-12-15T16:43:52,640     check.warn(importable)
2023-12-15T16:43:52,640   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.fileformats.xtc.src' is absent from the `packages` configuration.
2023-12-15T16:43:52,640   !!

2023-12-15T16:43:52,641           ********************************************************************************
2023-12-15T16:43:52,641           ############################
2023-12-15T16:43:52,641           # Package would be ignored #
2023-12-15T16:43:52,641           ############################
2023-12-15T16:43:52,641           Python recognizes 'moleculekit.fileformats.xtc.src' as an importable package[^1],
2023-12-15T16:43:52,641           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,642           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,642           package, please make sure that 'moleculekit.fileformats.xtc.src' is explicitly added
2023-12-15T16:43:52,642           to the `packages` configuration field.

2023-12-15T16:43:52,642           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,642           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,643           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,643           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,643           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,643           If you don't want 'moleculekit.fileformats.xtc.src' to be distributed and are
2023-12-15T16:43:52,643           already explicitly excluding 'moleculekit.fileformats.xtc.src' via
2023-12-15T16:43:52,644           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,644           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,644           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,644           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,645           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,645           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,645                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,645                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,646                 directory, all directories are treated like packages.
2023-12-15T16:43:52,646           ********************************************************************************

2023-12-15T16:43:52,646   !!
2023-12-15T16:43:52,646     check.warn(importable)
2023-12-15T16:43:52,646   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.cationpi' is absent from the `packages` configuration.
2023-12-15T16:43:52,646   !!

2023-12-15T16:43:52,647           ********************************************************************************
2023-12-15T16:43:52,647           ############################
2023-12-15T16:43:52,647           # Package would be ignored #
2023-12-15T16:43:52,647           ############################
2023-12-15T16:43:52,647           Python recognizes 'moleculekit.interactions.cationpi' as an importable package[^1],
2023-12-15T16:43:52,648           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,648           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,648           package, please make sure that 'moleculekit.interactions.cationpi' is explicitly added
2023-12-15T16:43:52,648           to the `packages` configuration field.

2023-12-15T16:43:52,648           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,649           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,649           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,649           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,650           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,650           If you don't want 'moleculekit.interactions.cationpi' to be distributed and are
2023-12-15T16:43:52,650           already explicitly excluding 'moleculekit.interactions.cationpi' via
2023-12-15T16:43:52,650           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,650           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,650           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,651           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,651           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,651           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,651                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,651                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,652                 directory, all directories are treated like packages.
2023-12-15T16:43:52,652           ********************************************************************************

2023-12-15T16:43:52,652   !!
2023-12-15T16:43:52,652     check.warn(importable)
2023-12-15T16:43:52,652   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.hbonds' is absent from the `packages` configuration.
2023-12-15T16:43:52,652   !!

2023-12-15T16:43:52,652           ********************************************************************************
2023-12-15T16:43:52,653           ############################
2023-12-15T16:43:52,653           # Package would be ignored #
2023-12-15T16:43:52,653           ############################
2023-12-15T16:43:52,653           Python recognizes 'moleculekit.interactions.hbonds' as an importable package[^1],
2023-12-15T16:43:52,653           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,653           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,653           package, please make sure that 'moleculekit.interactions.hbonds' is explicitly added
2023-12-15T16:43:52,653           to the `packages` configuration field.

2023-12-15T16:43:52,654           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,654           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,654           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,654           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,654           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,655           If you don't want 'moleculekit.interactions.hbonds' to be distributed and are
2023-12-15T16:43:52,655           already explicitly excluding 'moleculekit.interactions.hbonds' via
2023-12-15T16:43:52,655           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,655           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,655           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,655           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,655           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,667           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,667                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,667                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,667                 directory, all directories are treated like packages.
2023-12-15T16:43:52,667           ********************************************************************************

2023-12-15T16:43:52,667   !!
2023-12-15T16:43:52,668     check.warn(importable)
2023-12-15T16:43:52,668   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.pipi' is absent from the `packages` configuration.
2023-12-15T16:43:52,668   !!

2023-12-15T16:43:52,668           ********************************************************************************
2023-12-15T16:43:52,668           ############################
2023-12-15T16:43:52,668           # Package would be ignored #
2023-12-15T16:43:52,668           ############################
2023-12-15T16:43:52,669           Python recognizes 'moleculekit.interactions.pipi' as an importable package[^1],
2023-12-15T16:43:52,669           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,669           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,669           package, please make sure that 'moleculekit.interactions.pipi' is explicitly added
2023-12-15T16:43:52,669           to the `packages` configuration field.

2023-12-15T16:43:52,669           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,670           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,670           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,670           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,670           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,670           If you don't want 'moleculekit.interactions.pipi' to be distributed and are
2023-12-15T16:43:52,671           already explicitly excluding 'moleculekit.interactions.pipi' via
2023-12-15T16:43:52,671           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,671           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,671           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,671           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,671           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,672           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,672                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,672                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,672                 directory, all directories are treated like packages.
2023-12-15T16:43:52,672           ********************************************************************************

2023-12-15T16:43:52,672   !!
2023-12-15T16:43:52,672     check.warn(importable)
2023-12-15T16:43:52,673   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.interactions.sigmahole' is absent from the `packages` configuration.
2023-12-15T16:43:52,673   !!

2023-12-15T16:43:52,673           ********************************************************************************
2023-12-15T16:43:52,673           ############################
2023-12-15T16:43:52,673           # Package would be ignored #
2023-12-15T16:43:52,673           ############################
2023-12-15T16:43:52,673           Python recognizes 'moleculekit.interactions.sigmahole' as an importable package[^1],
2023-12-15T16:43:52,674           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,674           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,674           package, please make sure that 'moleculekit.interactions.sigmahole' is explicitly added
2023-12-15T16:43:52,674           to the `packages` configuration field.

2023-12-15T16:43:52,674           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,674           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,675           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,675           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,675           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,675           If you don't want 'moleculekit.interactions.sigmahole' to be distributed and are
2023-12-15T16:43:52,675           already explicitly excluding 'moleculekit.interactions.sigmahole' via
2023-12-15T16:43:52,676           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,676           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,676           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,676           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,676           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,677           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,677                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,677                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,677                 directory, all directories are treated like packages.
2023-12-15T16:43:52,677           ********************************************************************************

2023-12-15T16:43:52,678   !!
2023-12-15T16:43:52,678     check.warn(importable)
2023-12-15T16:43:52,678   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.occupancy_utils' is absent from the `packages` configuration.
2023-12-15T16:43:52,678   !!

2023-12-15T16:43:52,678           ********************************************************************************
2023-12-15T16:43:52,678           ############################
2023-12-15T16:43:52,678           # Package would be ignored #
2023-12-15T16:43:52,679           ############################
2023-12-15T16:43:52,679           Python recognizes 'moleculekit.occupancy_utils' as an importable package[^1],
2023-12-15T16:43:52,679           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,679           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,679           package, please make sure that 'moleculekit.occupancy_utils' is explicitly added
2023-12-15T16:43:52,679           to the `packages` configuration field.

2023-12-15T16:43:52,680           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,680           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,680           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,680           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,680           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,681           If you don't want 'moleculekit.occupancy_utils' to be distributed and are
2023-12-15T16:43:52,681           already explicitly excluding 'moleculekit.occupancy_utils' via
2023-12-15T16:43:52,681           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,681           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,681           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,681           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,682           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,682           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,682                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,682                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,682                 directory, all directories are treated like packages.
2023-12-15T16:43:52,682           ********************************************************************************

2023-12-15T16:43:52,683   !!
2023-12-15T16:43:52,683     check.warn(importable)
2023-12-15T16:43:52,683   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share' is absent from the `packages` configuration.
2023-12-15T16:43:52,683   !!

2023-12-15T16:43:52,683           ********************************************************************************
2023-12-15T16:43:52,683           ############################
2023-12-15T16:43:52,683           # Package would be ignored #
2023-12-15T16:43:52,683           ############################
2023-12-15T16:43:52,684           Python recognizes 'moleculekit.share' as an importable package[^1],
2023-12-15T16:43:52,684           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,684           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,684           package, please make sure that 'moleculekit.share' is explicitly added
2023-12-15T16:43:52,684           to the `packages` configuration field.

2023-12-15T16:43:52,685           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,685           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,685           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,686           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,686           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,686           If you don't want 'moleculekit.share' to be distributed and are
2023-12-15T16:43:52,687           already explicitly excluding 'moleculekit.share' via
2023-12-15T16:43:52,687           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,687           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,687           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,687           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,688           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,688           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,688                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,689                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,689                 directory, all directories are treated like packages.
2023-12-15T16:43:52,689           ********************************************************************************

2023-12-15T16:43:52,689   !!
2023-12-15T16:43:52,689     check.warn(importable)
2023-12-15T16:43:52,689   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.atomselect' is absent from the `packages` configuration.
2023-12-15T16:43:52,690   !!

2023-12-15T16:43:52,690           ********************************************************************************
2023-12-15T16:43:52,690           ############################
2023-12-15T16:43:52,690           # Package would be ignored #
2023-12-15T16:43:52,690           ############################
2023-12-15T16:43:52,690           Python recognizes 'moleculekit.share.atomselect' as an importable package[^1],
2023-12-15T16:43:52,690           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,691           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,691           package, please make sure that 'moleculekit.share.atomselect' is explicitly added
2023-12-15T16:43:52,691           to the `packages` configuration field.

2023-12-15T16:43:52,691           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,691           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,692           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,692           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,692           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,692           If you don't want 'moleculekit.share.atomselect' to be distributed and are
2023-12-15T16:43:52,693           already explicitly excluding 'moleculekit.share.atomselect' via
2023-12-15T16:43:52,693           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,693           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,693           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,693           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,694           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,694           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,694                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,694                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,694                 directory, all directories are treated like packages.
2023-12-15T16:43:52,695           ********************************************************************************

2023-12-15T16:43:52,695   !!
2023-12-15T16:43:52,695     check.warn(importable)
2023-12-15T16:43:52,695   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.share.pdb2pqr.residues' is absent from the `packages` configuration.
2023-12-15T16:43:52,695   !!

2023-12-15T16:43:52,695           ********************************************************************************
2023-12-15T16:43:52,696           ############################
2023-12-15T16:43:52,696           # Package would be ignored #
2023-12-15T16:43:52,696           ############################
2023-12-15T16:43:52,696           Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package[^1],
2023-12-15T16:43:52,696           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,696           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,696           package, please make sure that 'moleculekit.share.pdb2pqr.residues' is explicitly added
2023-12-15T16:43:52,697           to the `packages` configuration field.

2023-12-15T16:43:52,697           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,697           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,697           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,697           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,698           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,698           If you don't want 'moleculekit.share.pdb2pqr.residues' to be distributed and are
2023-12-15T16:43:52,698           already explicitly excluding 'moleculekit.share.pdb2pqr.residues' via
2023-12-15T16:43:52,698           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,698           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,698           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,698           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,699           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,699           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,699                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,699                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,699                 directory, all directories are treated like packages.
2023-12-15T16:43:52,699           ********************************************************************************

2023-12-15T16:43:52,700   !!
2023-12-15T16:43:52,700     check.warn(importable)
2023-12-15T16:43:52,700   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign' is absent from the `packages` configuration.
2023-12-15T16:43:52,700   !!

2023-12-15T16:43:52,700           ********************************************************************************
2023-12-15T16:43:52,700           ############################
2023-12-15T16:43:52,701           # Package would be ignored #
2023-12-15T16:43:52,701           ############################
2023-12-15T16:43:52,701           Python recognizes 'moleculekit.tmalign' as an importable package[^1],
2023-12-15T16:43:52,701           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,701           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,701           package, please make sure that 'moleculekit.tmalign' is explicitly added
2023-12-15T16:43:52,702           to the `packages` configuration field.

2023-12-15T16:43:52,702           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,702           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,702           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,702           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,703           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,703           If you don't want 'moleculekit.tmalign' to be distributed and are
2023-12-15T16:43:52,703           already explicitly excluding 'moleculekit.tmalign' via
2023-12-15T16:43:52,703           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,703           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,703           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,704           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,704           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,704           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,704                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,704                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,705                 directory, all directories are treated like packages.
2023-12-15T16:43:52,705           ********************************************************************************

2023-12-15T16:43:52,705   !!
2023-12-15T16:43:52,705     check.warn(importable)
2023-12-15T16:43:52,705   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.include' is absent from the `packages` configuration.
2023-12-15T16:43:52,705   !!

2023-12-15T16:43:52,705           ********************************************************************************
2023-12-15T16:43:52,706           ############################
2023-12-15T16:43:52,706           # Package would be ignored #
2023-12-15T16:43:52,706           ############################
2023-12-15T16:43:52,706           Python recognizes 'moleculekit.tmalign.include' as an importable package[^1],
2023-12-15T16:43:52,706           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,706           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,706           package, please make sure that 'moleculekit.tmalign.include' is explicitly added
2023-12-15T16:43:52,707           to the `packages` configuration field.

2023-12-15T16:43:52,707           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,707           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,707           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,707           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,707           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,708           If you don't want 'moleculekit.tmalign.include' to be distributed and are
2023-12-15T16:43:52,708           already explicitly excluding 'moleculekit.tmalign.include' via
2023-12-15T16:43:52,708           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,708           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,708           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,708           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,709           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,709           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,709                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,709                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,709                 directory, all directories are treated like packages.
2023-12-15T16:43:52,710           ********************************************************************************

2023-12-15T16:43:52,710   !!
2023-12-15T16:43:52,710     check.warn(importable)
2023-12-15T16:43:52,710   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.tmalign.src' is absent from the `packages` configuration.
2023-12-15T16:43:52,710   !!

2023-12-15T16:43:52,710           ********************************************************************************
2023-12-15T16:43:52,710           ############################
2023-12-15T16:43:52,711           # Package would be ignored #
2023-12-15T16:43:52,711           ############################
2023-12-15T16:43:52,711           Python recognizes 'moleculekit.tmalign.src' as an importable package[^1],
2023-12-15T16:43:52,711           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,711           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,711           package, please make sure that 'moleculekit.tmalign.src' is explicitly added
2023-12-15T16:43:52,711           to the `packages` configuration field.

2023-12-15T16:43:52,712           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,712           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,712           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,712           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,712           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,713           If you don't want 'moleculekit.tmalign.src' to be distributed and are
2023-12-15T16:43:52,713           already explicitly excluding 'moleculekit.tmalign.src' via
2023-12-15T16:43:52,713           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,713           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,713           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,713           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,714           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,714           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,714                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,714                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,714                 directory, all directories are treated like packages.
2023-12-15T16:43:52,715           ********************************************************************************

2023-12-15T16:43:52,715   !!
2023-12-15T16:43:52,715     check.warn(importable)
2023-12-15T16:43:52,715   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'moleculekit.wrapping' is absent from the `packages` configuration.
2023-12-15T16:43:52,715   !!

2023-12-15T16:43:52,715           ********************************************************************************
2023-12-15T16:43:52,716           ############################
2023-12-15T16:43:52,716           # Package would be ignored #
2023-12-15T16:43:52,716           ############################
2023-12-15T16:43:52,716           Python recognizes 'moleculekit.wrapping' as an importable package[^1],
2023-12-15T16:43:52,716           but it is absent from setuptools' `packages` configuration.

2023-12-15T16:43:52,716           This leads to an ambiguous overall configuration. If you want to distribute this
2023-12-15T16:43:52,716           package, please make sure that 'moleculekit.wrapping' is explicitly added
2023-12-15T16:43:52,716           to the `packages` configuration field.

2023-12-15T16:43:52,717           Alternatively, you can also rely on setuptools' discovery methods
2023-12-15T16:43:52,717           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-12-15T16:43:52,717           instead of `find_packages(...)`/`find:`).

2023-12-15T16:43:52,717           You can read more about "package discovery" on setuptools documentation page:

2023-12-15T16:43:52,717           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2023-12-15T16:43:52,718           If you don't want 'moleculekit.wrapping' to be distributed and are
2023-12-15T16:43:52,718           already explicitly excluding 'moleculekit.wrapping' via
2023-12-15T16:43:52,718           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2023-12-15T16:43:52,718           you can try to use `exclude_package_data`, or `include-package-data=False` in
2023-12-15T16:43:52,718           combination with a more fine grained `package-data` configuration.

2023-12-15T16:43:52,718           You can read more about "package data files" on setuptools documentation page:

2023-12-15T16:43:52,719           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2023-12-15T16:43:52,719           [^1]: For Python, any directory (with suitable naming) can be imported,
2023-12-15T16:43:52,719                 even if it does not contain any `.py` files.
2023-12-15T16:43:52,719                 On the other hand, currently there is no concept of package data
2023-12-15T16:43:52,719                 directory, all directories are treated like packages.
2023-12-15T16:43:52,719           ********************************************************************************

2023-12-15T16:43:52,720   !!
2023-12-15T16:43:52,720     check.warn(importable)
2023-12-15T16:43:52,720   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,720   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:52,720   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-15T16:43:52,720   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-15T16:43:52,720   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-15T16:43:52,721   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-15T16:43:52,721   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-15T16:43:52,721   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-15T16:43:52,721   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-15T16:43:52,721   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-15T16:43:52,733   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-15T16:43:52,736   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-15T16:43:52,736   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-15T16:43:52,754   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-15T16:43:52,756   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-15T16:43:52,757   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-15T16:43:52,759   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-15T16:43:52,761   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-12-15T16:43:53,000   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-12-15T16:43:53,001   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-12-15T16:43:53,003   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-12-15T16:43:53,004   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,005   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,007   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,010   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,012   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,015   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,017   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,019   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,021   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,024   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,026   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,028   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,031   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,033   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,035   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,038   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,040   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,042   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,045   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,047   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,049   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,052   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,054   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,056   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,059   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,061   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,063   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,066   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,068   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,070   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,072   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,075   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,077   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,079   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,082   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,084   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,087   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,089   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,094   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,103   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,110   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,113   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,117   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,121   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,126   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,342   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,344   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,346   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,349   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,351   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,354   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,356   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,358   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,360   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,363   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,365   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,367   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,369   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,372   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,374   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,376   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,378   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,381   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,383   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,385   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,387   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,390   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,392   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,394   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,396   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,399   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,401   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,404   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,406   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,408   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,410   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,412   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,415   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,417   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,420   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,422   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,425   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,427   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,429   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,432   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,434   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,436   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,438   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,441   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,443   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,445   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,447   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,450   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,452   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,454   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,456   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,459   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,461   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,463   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,466   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,468   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,470   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,472   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,474   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,477   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,479   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,482   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,484   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,486   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,488   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,491   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,493   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,495   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,497   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,499   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,502   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,504   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,506   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,509   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,512   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,516   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,518   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,521   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,524   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,528   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,531   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,534   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,537   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,544   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,547   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,550   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,553   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,556   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,559   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,562   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,565   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,568   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,572   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,575   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,578   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,581   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,583   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,586   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,588   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,591   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,594   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,596   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,599   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,601   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,604   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,607   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,610   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,612   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,614   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,616   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,617   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,620   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,622   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,624   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,625   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,628   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,630   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,632   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,633   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,636   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,637   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,640   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,642   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,644   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,646   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,649   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,651   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,653   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,655   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,657   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,659   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-12-15T16:43:53,661   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-15T16:43:53,662   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-15T16:43:53,681   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-15T16:43:53,683   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-15T16:43:53,685   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-12-15T16:43:53,686   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-12-15T16:43:53,688   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-15T16:43:53,689   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-15T16:43:53,695   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-15T16:43:53,696   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-15T16:43:53,724   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-15T16:43:53,727   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-15T16:43:53,727   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-15T16:43:53,746   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-15T16:43:53,749   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-15T16:43:53,750   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-15T16:43:53,770   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-15T16:43:53,773   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-15T16:43:53,774   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-15T16:43:53,797   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-15T16:43:53,799   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-15T16:43:53,800   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-15T16:43:53,821   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-15T16:43:53,823   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2023-12-15T16:43:53,824   copying moleculekit/fileformats/binpos/binpos.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2023-12-15T16:43:53,837   copying moleculekit/fileformats/binpos/binpos.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2023-12-15T16:43:53,839   copying moleculekit/fileformats/binpos/binposlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2023-12-15T16:43:53,841   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2023-12-15T16:43:53,842   copying moleculekit/fileformats/binpos/include/binposplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2023-12-15T16:43:53,844   copying moleculekit/fileformats/binpos/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2023-12-15T16:43:53,846   copying moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include
2023-12-15T16:43:53,849   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2023-12-15T16:43:53,850   copying moleculekit/fileformats/binpos/src/binposplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2023-12-15T16:43:53,852   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2023-12-15T16:43:53,853   copying moleculekit/fileformats/dcd/dcd.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2023-12-15T16:43:53,872   copying moleculekit/fileformats/dcd/dcd.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2023-12-15T16:43:53,875   copying moleculekit/fileformats/dcd/dcdlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2023-12-15T16:43:53,876   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,877   copying moleculekit/fileformats/dcd/include/dcdplugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,880   copying moleculekit/fileformats/dcd/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,882   copying moleculekit/fileformats/dcd/include/fastio.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,884   copying moleculekit/fileformats/dcd/include/largefiles.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,886   copying moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include
2023-12-15T16:43:53,889   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2023-12-15T16:43:53,890   copying moleculekit/fileformats/dcd/src/dcdplugin.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2023-12-15T16:43:53,893   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,894   copying moleculekit/fileformats/xtc/trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,914   copying moleculekit/fileformats/xtc/trr.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,916   copying moleculekit/fileformats/xtc/trrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,918   copying moleculekit/fileformats/xtc/xdrlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,920   copying moleculekit/fileformats/xtc/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,948   copying moleculekit/fileformats/xtc/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,950   copying moleculekit/fileformats/xtc/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:43:53,951   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,952   copying moleculekit/fileformats/xtc/include/trr_header.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,954   copying moleculekit/fileformats/xtc/include/xdr_seek.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,956   copying moleculekit/fileformats/xtc/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,959   copying moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,961   copying moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,963   copying moleculekit/fileformats/xtc/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include
2023-12-15T16:43:53,965   creating build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,966   copying moleculekit/fileformats/xtc/src/xdr_seek.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,968   copying moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,971   copying moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,974   copying moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,976   copying moleculekit/fileformats/xtc/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:43:53,988   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-12-15T16:43:53,988   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.17'
2023-12-15T16:43:53,988   running build_ext
2023-12-15T16:43:54,000   building 'moleculekit.interactions.hbonds' extension
2023-12-15T16:43:54,000   creating build/temp.linux-armv7l-cpython-39
2023-12-15T16:43:54,001   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-12-15T16:43:54,001   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-12-15T16:43:54,002   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-12-15T16:43:54,003   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-12-15T16:43:54,279   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:43:54,279                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:43:54,279                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:43:54,279                    from moleculekit/interactions/hbonds/hbonds.cpp:1230:
2023-12-15T16:43:54,280   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:43:54,280      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:43:54,280         |  ^~~~~~~
2023-12-15T16:44:20,418   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:44:20,736   building 'moleculekit.interactions.pipi' extension
2023-12-15T16:44:20,737   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-12-15T16:44:20,738   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-12-15T16:44:20,967   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:44:20,967                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:44:20,967                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:44:20,967                    from moleculekit/interactions/pipi/pipi.cpp:1230:
2023-12-15T16:44:20,967   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:44:20,967      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:44:20,968         |  ^~~~~~~
2023-12-15T16:44:49,131   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:44:49,455   building 'moleculekit.interactions.cationpi' extension
2023-12-15T16:44:49,456   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-12-15T16:44:49,457   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-12-15T16:44:49,706   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:44:49,707                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:44:49,707                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:44:49,707                    from moleculekit/interactions/cationpi/cationpi.cpp:1230:
2023-12-15T16:44:49,707   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:44:49,707      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:44:49,708         |  ^~~~~~~
2023-12-15T16:45:17,657   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:45:17,975   building 'moleculekit.interactions.sigmahole' extension
2023-12-15T16:45:17,976   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-12-15T16:45:17,977   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-12-15T16:45:18,220   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:45:18,220                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:45:18,220                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:45:18,220                    from moleculekit/interactions/sigmahole/sigmahole.cpp:1230:
2023-12-15T16:45:18,221   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:45:18,221      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:45:18,221         |  ^~~~~~~
2023-12-15T16:45:45,495   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:45:45,825   building 'moleculekit.wrapping' extension
2023-12-15T16:45:45,826   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-12-15T16:45:45,827   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-12-15T16:45:46,091   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:45:46,091                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:45:46,091                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:45:46,091                    from moleculekit/wrapping/wrapping.cpp:1230:
2023-12-15T16:45:46,091   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:45:46,091      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:45:46,091         |  ^~~~~~~
2023-12-15T16:46:11,918   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:46:12,165   building 'moleculekit.bondguesser_utils' extension
2023-12-15T16:46:12,166   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-12-15T16:46:12,167   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-12-15T16:46:12,403   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:46:12,403                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:46:12,403                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:46:12,403                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:1230:
2023-12-15T16:46:12,403   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:46:12,403      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:46:12,403         |  ^~~~~~~
2023-12-15T16:46:14,426   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-12-15T16:46:14,426   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19782:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T16:46:14,426   19782 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-12-15T16:46:14,426         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T16:46:14,427   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19794:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T16:46:14,427   19794 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-12-15T16:46:14,427         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T16:46:14,428   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19806:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-12-15T16:46:14,428   19806 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-12-15T16:46:14,428         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-12-15T16:46:14,429   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19845:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,429   19845 |         __pyx_t_12 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,429         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,430   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19884:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,430   19884 |         __pyx_t_12 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T16:46:14,430         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,431   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19923:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,431   19923 |         __pyx_t_12 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,431         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,432   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19962:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,432   19962 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,432         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,433   moleculekit/bondguesser_utils/bondguesser_utils.cpp:19968:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,433   19968 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T16:46:14,433         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,434   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20009:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,434   20009 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,434         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,434   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20015:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,435   20015 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,435         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,435   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20056:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,436   20056 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T16:46:14,436         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,436   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20062:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,436   20062 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,436         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,437   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20103:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,437   20103 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,437         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20156:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,439   20156 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,439         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,440   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20203:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,440   20203 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,440         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20244:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,441   20244 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,441         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20250:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,442   20250 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T16:46:14,442         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,442   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20256:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,442   20256 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,442         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20303:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,443   20303 |         __pyx_t_13 = (__pyx_v_yi < (__pyx_v_yboxes - 1));
2023-12-15T16:46:14,443         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20309:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,444   20309 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,444         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20350:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,445   20350 |         __pyx_t_13 = (__pyx_v_xi < (__pyx_v_xboxes - 1));
2023-12-15T16:46:14,445         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,446   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20362:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,446   20362 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,446         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,447   moleculekit/bondguesser_utils/bondguesser_utils.cpp:20415:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-12-15T16:46:14,447   20415 |         __pyx_t_13 = (__pyx_v_zi < (__pyx_v_zboxes - 1));
2023-12-15T16:46:14,447         |                       ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,467   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-12-15T16:46:14,467   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21037:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T16:46:14,467   21037 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_n_boxes);
2023-12-15T16:46:14,467         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-12-15T16:46:14,468   moleculekit/bondguesser_utils/bondguesser_utils.cpp:21074:37: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T16:46:14,468   21074 |       __pyx_t_6 = (__pyx_v_boxneigh == __pyx_v_boxidx);
2023-12-15T16:46:14,468         |                    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-15T16:46:37,447   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:46:37,764   building 'moleculekit.atomselect_utils' extension
2023-12-15T16:46:37,764   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-12-15T16:46:37,765   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-12-15T16:46:38,005   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:46:38,006                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:46:38,006                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:46:38,006                    from moleculekit/atomselect_utils/atomselect_utils.cpp:1247:
2023-12-15T16:46:38,006   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:46:38,006      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:46:38,006         |  ^~~~~~~
2023-12-15T16:46:39,735   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-12-15T16:46:39,735   moleculekit/atomselect_utils/atomselect_utils.cpp:23216:161: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T16:46:39,736   23216 |       __pyx_t_3 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum);
2023-12-15T16:46:39,736         |                    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-12-15T16:46:39,741   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-15T16:46:39,742   moleculekit/atomselect_utils/atomselect_utils.cpp:23468:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T16:46:39,742   23468 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-15T16:46:39,742         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T16:46:39,747   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-12-15T16:46:39,748   moleculekit/atomselect_utils/atomselect_utils.cpp:23735:163: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-12-15T16:46:39,748   23735 |         __pyx_t_6 = ((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i);
2023-12-15T16:46:39,748         |                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T16:47:09,545   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:47:09,865   building 'moleculekit.distance_utils' extension
2023-12-15T16:47:09,866   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-12-15T16:47:09,866   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-12-15T16:47:10,124   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:47:10,124                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:47:10,124                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:47:10,124                    from moleculekit/distance_utils/distance_utils.cpp:1230:
2023-12-15T16:47:10,124   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:47:10,125      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:47:10,125         |  ^~~~~~~
2023-12-15T16:47:45,100   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:47:45,431   building 'moleculekit.occupancy_utils' extension
2023-12-15T16:47:45,431   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-12-15T16:47:45,432   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-12-15T16:47:45,688   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:47:45,688                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:47:45,688                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:47:45,688                    from moleculekit/occupancy_utils/occupancy_utils.cpp:1230:
2023-12-15T16:47:45,688   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:47:45,689      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:47:45,689         |  ^~~~~~~
2023-12-15T16:48:08,569   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:48:08,778   building 'moleculekit.xtc' extension
2023-12-15T16:48:08,779   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats
2023-12-15T16:48:08,780   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc
2023-12-15T16:48:08,780   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src
2023-12-15T16:48:08,782   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2023-12-15T16:48:09,020   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,021      66 |  "OK",
2023-12-15T16:48:09,021         |  ^~~~
2023-12-15T16:48:09,021   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,021      67 |  "Header",
2023-12-15T16:48:09,021         |  ^~~~~~~~
2023-12-15T16:48:09,022   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,022      68 |  "String",
2023-12-15T16:48:09,022         |  ^~~~~~~~
2023-12-15T16:48:09,022   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,022      69 |  "Double",
2023-12-15T16:48:09,022         |  ^~~~~~~~
2023-12-15T16:48:09,022   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,023      70 |  "Integer",
2023-12-15T16:48:09,023         |  ^~~~~~~~~
2023-12-15T16:48:09,023   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,023      71 |  "Float",
2023-12-15T16:48:09,023         |  ^~~~~~~
2023-12-15T16:48:09,023   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,023      72 |  "Unsigned integer",
2023-12-15T16:48:09,023         |  ^~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,024   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,024      73 |  "Compressed 3D coordinate",
2023-12-15T16:48:09,024         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,024   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,024      74 |  "Closing file",
2023-12-15T16:48:09,024         |  ^~~~~~~~~~~~~~
2023-12-15T16:48:09,024   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,025      75 |  "Magic number",
2023-12-15T16:48:09,025         |  ^~~~~~~~~~~~~~
2023-12-15T16:48:09,025   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,025      76 |  "Not enough memory",
2023-12-15T16:48:09,025         |  ^~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,025   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,025      77 |  "End of file",
2023-12-15T16:48:09,026         |  ^~~~~~~~~~~~~
2023-12-15T16:48:09,026   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:09,026      78 |  "File not found"
2023-12-15T16:48:09,026         |  ^~~~~~~~~~~~~~~~
2023-12-15T16:48:09,030   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-15T16:48:09,030   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,030     459 |     while (size >= num && num_of_bits < 32)
2023-12-15T16:48:09,030         |            ~~~~~^~~~~~
2023-12-15T16:48:09,031   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-15T16:48:09,031   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,031     505 |     while (bytes[num_of_bytes] >= num)
2023-12-15T16:48:09,031         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T16:48:09,033   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-15T16:48:09,033   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,034     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-15T16:48:09,034         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,034   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,034     616 |   for (i = 0; i < num_of_bytes; i++)
2023-12-15T16:48:09,034         |               ~~^~~~~~~~~~~~~~
2023-12-15T16:48:09,034   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,034     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-12-15T16:48:09,034         |               ~~^~~~~~~~~~~~~~~~
2023-12-15T16:48:09,035   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-15T16:48:09,035   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,035     664 |   if (lastbits < num_of_bits)
2023-12-15T16:48:09,035         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-12-15T16:48:09,038   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-15T16:48:09,038   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,039     785 |  if(size3>xfp->buf1size)
2023-12-15T16:48:09,039         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:09,040   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,040     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:09,041         |                   ^
2023-12-15T16:48:09,043   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,043     932 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,043         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,043   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,043     935 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,044         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,044   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,044     938 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,044         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,044   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,044     945 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,044         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,045   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,045     948 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,045         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,045   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,045     951 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:09,045         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:09,045   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,045     756 |  int smallidx,  minidx, maxidx;
2023-12-15T16:48:09,046         |                 ^~~~~~
2023-12-15T16:48:09,046   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,046     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T16:48:09,046         |                         ^~~~~~
2023-12-15T16:48:09,046   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T16:48:09,046     763 |  int errval=1;
2023-12-15T16:48:09,046         |      ^~~~~~
2023-12-15T16:48:09,047   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-15T16:48:09,047   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,047    1011 |  if(size3>xfp->buf1size)
2023-12-15T16:48:09,048         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:09,049   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,049    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:09,050         |                     ~~~~~~~~^~~~~~~
2023-12-15T16:48:09,050   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,050    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:09,050         |                    ~~~~~~~~^~~~~~~
2023-12-15T16:48:09,050   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,051    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:09,051         |                    ~~~~~~~~^~~~~~~
2023-12-15T16:48:09,052   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,052    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-15T16:48:09,052         |                  ^
2023-12-15T16:48:09,053   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,053    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:09,053         |                   ^
2023-12-15T16:48:09,056   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,057    1275 |  if(tmp==(unsigned int)buf2[0])
2023-12-15T16:48:09,057         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,057   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,057    1001 |  int errval;
2023-12-15T16:48:09,057         |      ^~~~~~
2023-12-15T16:48:09,059   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-15T16:48:09,060   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,060    1316 |  if(size3>xfp->buf1size)
2023-12-15T16:48:09,060         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:09,062   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,062    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:09,062         |                   ^
2023-12-15T16:48:09,064   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,065    1289 |  int smallidx,  maxidx, minidx;
2023-12-15T16:48:09,065         |                         ^~~~~~
2023-12-15T16:48:09,065   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,065    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T16:48:09,065         |                         ^~~~~~
2023-12-15T16:48:09,065   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T16:48:09,065    1297 |  int errval=1;
2023-12-15T16:48:09,066         |      ^~~~~~
2023-12-15T16:48:09,067   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-15T16:48:09,067   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,067    1513 |  if(size3>xfp->buf1size) {
2023-12-15T16:48:09,067         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:09,071   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,071    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-15T16:48:09,071         |                  ^
2023-12-15T16:48:09,072   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:09,072    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:09,072         |                   ^
2023-12-15T16:48:09,075   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:09,075    1743 |  if(tmp==(unsigned int)buf2[0])
2023-12-15T16:48:09,076         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:09,076   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:09,076    1504 |  int errval=1;
2023-12-15T16:48:09,076         |      ^~~~~~
2023-12-15T16:48:11,300   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o
2023-12-15T16:48:11,551   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o
2023-12-15T16:48:12,131   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-12-15T16:48:12,131   moleculekit/fileformats/xtc/src/xtc.cpp:238:23: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:12,131     238 |   for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T16:48:12,131         |                  ~~~~~^~~~~~~~
2023-12-15T16:48:12,131   moleculekit/fileformats/xtc/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-15T16:48:12,132     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-12-15T16:48:12,132         |      ^~~
2023-12-15T16:48:12,138   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-12-15T16:48:12,138   moleculekit/fileformats/xtc/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-12-15T16:48:12,139     418 |  int nf3 = nframes * 3;
2023-12-15T16:48:12,139         |      ^~~
2023-12-15T16:48:12,140   moleculekit/fileformats/xtc/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-12-15T16:48:12,141   moleculekit/fileformats/xtc/src/xtc.cpp:548:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:12,141     548 |    for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T16:48:12,141         |                   ~~~~~^~~~~~~~
2023-12-15T16:48:12,143   moleculekit/fileformats/xtc/src/xtc.cpp:617:24: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:12,143     617 |    for (aidx = 0; aidx < natoms; aidx++)
2023-12-15T16:48:12,143         |                   ~~~~~^~~~~~~~
2023-12-15T16:48:12,143   moleculekit/fileformats/xtc/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-12-15T16:48:12,144     491 |  int reading_index = 0;
2023-12-15T16:48:12,144         |      ^~~~~~~~~~~~~
2023-12-15T16:48:12,144   moleculekit/fileformats/xtc/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-12-15T16:48:12,144     492 |  int writing_index = 0;
2023-12-15T16:48:12,144         |      ^~~~~~~~~~~~~
2023-12-15T16:48:12,916   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o
2023-12-15T16:48:13,156   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:48:13,157                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:48:13,157                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:48:13,157                    from moleculekit/fileformats/xtc/xtc.cpp:1234:
2023-12-15T16:48:13,157   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:48:13,157      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:48:13,157         |  ^~~~~~~
2023-12-15T16:48:33,125   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:48:33,444   building 'moleculekit.trr' extension
2023-12-15T16:48:33,445   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdr_seek.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o
2023-12-15T16:48:33,560   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o
2023-12-15T16:48:33,791   moleculekit/fileformats/xtc/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,791      66 |  "OK",
2023-12-15T16:48:33,792         |  ^~~~
2023-12-15T16:48:33,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,792      67 |  "Header",
2023-12-15T16:48:33,792         |  ^~~~~~~~
2023-12-15T16:48:33,792   moleculekit/fileformats/xtc/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,792      68 |  "String",
2023-12-15T16:48:33,792         |  ^~~~~~~~
2023-12-15T16:48:33,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,793      69 |  "Double",
2023-12-15T16:48:33,793         |  ^~~~~~~~
2023-12-15T16:48:33,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,793      70 |  "Integer",
2023-12-15T16:48:33,793         |  ^~~~~~~~~
2023-12-15T16:48:33,793   moleculekit/fileformats/xtc/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,794      71 |  "Float",
2023-12-15T16:48:33,794         |  ^~~~~~~
2023-12-15T16:48:33,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,794      72 |  "Unsigned integer",
2023-12-15T16:48:33,794         |  ^~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,794   moleculekit/fileformats/xtc/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,794      73 |  "Compressed 3D coordinate",
2023-12-15T16:48:33,794         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,795      74 |  "Closing file",
2023-12-15T16:48:33,795         |  ^~~~~~~~~~~~~~
2023-12-15T16:48:33,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,795      75 |  "Magic number",
2023-12-15T16:48:33,795         |  ^~~~~~~~~~~~~~
2023-12-15T16:48:33,795   moleculekit/fileformats/xtc/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,796      76 |  "Not enough memory",
2023-12-15T16:48:33,796         |  ^~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,796   moleculekit/fileformats/xtc/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,796      77 |  "End of file",
2023-12-15T16:48:33,796         |  ^~~~~~~~~~~~~
2023-12-15T16:48:33,796   moleculekit/fileformats/xtc/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-12-15T16:48:33,796      78 |  "File not found"
2023-12-15T16:48:33,797         |  ^~~~~~~~~~~~~~~~
2023-12-15T16:48:33,801   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-12-15T16:48:33,801   moleculekit/fileformats/xtc/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,801     459 |     while (size >= num && num_of_bits < 32)
2023-12-15T16:48:33,801         |            ~~~~~^~~~~~
2023-12-15T16:48:33,801   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-12-15T16:48:33,802   moleculekit/fileformats/xtc/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,802     505 |     while (bytes[num_of_bytes] >= num)
2023-12-15T16:48:33,802         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T16:48:33,804   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-12-15T16:48:33,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,804     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-12-15T16:48:33,804         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,804   moleculekit/fileformats/xtc/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,805     616 |   for (i = 0; i < num_of_bytes; i++)
2023-12-15T16:48:33,805         |               ~~^~~~~~~~~~~~~~
2023-12-15T16:48:33,805   moleculekit/fileformats/xtc/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,805     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-12-15T16:48:33,805         |               ~~^~~~~~~~~~~~~~~~
2023-12-15T16:48:33,805   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-12-15T16:48:33,805   moleculekit/fileformats/xtc/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,806     664 |   if (lastbits < num_of_bits)
2023-12-15T16:48:33,806         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-12-15T16:48:33,809   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-12-15T16:48:33,809   moleculekit/fileformats/xtc/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,809     785 |  if(size3>xfp->buf1size)
2023-12-15T16:48:33,809         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:33,811   moleculekit/fileformats/xtc/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,811     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:33,811         |                   ^
2023-12-15T16:48:33,814   moleculekit/fileformats/xtc/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,814     932 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,814         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,814   moleculekit/fileformats/xtc/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,814     935 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,814         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,815     938 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,815         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,815     945 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,815         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,815   moleculekit/fileformats/xtc/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,815     948 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,816         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,816   moleculekit/fileformats/xtc/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,816     951 |     if(countmjh >= size3 ) { return -1; }
2023-12-15T16:48:33,816         |        ~~~~~~~~~^~~~~~~~
2023-12-15T16:48:33,816   moleculekit/fileformats/xtc/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,816     756 |  int smallidx,  minidx, maxidx;
2023-12-15T16:48:33,816         |                 ^~~~~~
2023-12-15T16:48:33,816   moleculekit/fileformats/xtc/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,817     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T16:48:33,817         |                         ^~~~~~
2023-12-15T16:48:33,817   moleculekit/fileformats/xtc/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T16:48:33,817     763 |  int errval=1;
2023-12-15T16:48:33,817         |      ^~~~~~
2023-12-15T16:48:33,818   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-12-15T16:48:33,818   moleculekit/fileformats/xtc/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,818    1011 |  if(size3>xfp->buf1size)
2023-12-15T16:48:33,818         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:33,820   moleculekit/fileformats/xtc/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,820    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:33,820         |                     ~~~~~~~~^~~~~~~
2023-12-15T16:48:33,821   moleculekit/fileformats/xtc/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,821    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:33,821         |                    ~~~~~~~~^~~~~~~
2023-12-15T16:48:33,821   moleculekit/fileformats/xtc/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,821    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-12-15T16:48:33,822         |                    ~~~~~~~~^~~~~~~
2023-12-15T16:48:33,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,823    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-12-15T16:48:33,823         |                  ^
2023-12-15T16:48:33,823   moleculekit/fileformats/xtc/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,824    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:33,824         |                   ^
2023-12-15T16:48:33,827   moleculekit/fileformats/xtc/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,827    1275 |  if(tmp==(unsigned int)buf2[0])
2023-12-15T16:48:33,827         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,828   moleculekit/fileformats/xtc/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,828    1001 |  int errval;
2023-12-15T16:48:33,828         |      ^~~~~~
2023-12-15T16:48:33,830   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-12-15T16:48:33,830   moleculekit/fileformats/xtc/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,831    1316 |  if(size3>xfp->buf1size)
2023-12-15T16:48:33,831         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:33,832   moleculekit/fileformats/xtc/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,832    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:33,833         |                   ^
2023-12-15T16:48:33,835   moleculekit/fileformats/xtc/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,835    1289 |  int smallidx,  maxidx, minidx;
2023-12-15T16:48:33,835         |                         ^~~~~~
2023-12-15T16:48:33,836   moleculekit/fileformats/xtc/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,836    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-12-15T16:48:33,836         |                         ^~~~~~
2023-12-15T16:48:33,836   moleculekit/fileformats/xtc/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-12-15T16:48:33,836    1297 |  int errval=1;
2023-12-15T16:48:33,836         |      ^~~~~~
2023-12-15T16:48:33,837   moleculekit/fileformats/xtc/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-12-15T16:48:33,837   moleculekit/fileformats/xtc/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,838    1513 |  if(size3>xfp->buf1size) {
2023-12-15T16:48:33,838         |     ~~~~~^~~~~~~~~~~~~~
2023-12-15T16:48:33,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,842    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-12-15T16:48:33,842         |                  ^
2023-12-15T16:48:33,842   moleculekit/fileformats/xtc/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:48:33,842    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-12-15T16:48:33,843         |                   ^
2023-12-15T16:48:33,846   moleculekit/fileformats/xtc/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:48:33,846    1743 |  if(tmp==(unsigned int)buf2[0])
2023-12-15T16:48:33,846         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:48:33,846   moleculekit/fileformats/xtc/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-12-15T16:48:33,847    1504 |  int errval=1;
2023-12-15T16:48:33,847         |      ^~~~~~
2023-12-15T16:48:36,075   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o
2023-12-15T16:48:36,167   moleculekit/fileformats/xtc/src/xdrfile_trr.c: In function ‘do_trnheader’:
2023-12-15T16:48:36,167   moleculekit/fileformats/xtc/src/xdrfile_trr.c:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-12-15T16:48:36,167     111 |         if (slen != strlen(version)+1)
2023-12-15T16:48:36,168         |                  ^~
2023-12-15T16:48:36,168   moleculekit/fileformats/xtc/src/xdrfile_trr.c:121:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2023-12-15T16:48:36,168     121 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2023-12-15T16:48:36,168         |                                              ^~
2023-12-15T16:48:36,738   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/xtc -Imoleculekit/fileformats/xtc/include/ -Imoleculekit/fileformats/xtc/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/xtc/trr.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o
2023-12-15T16:48:37,053   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:48:37,053                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:48:37,053                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:48:37,053                    from moleculekit/fileformats/xtc/trr.c:1226:
2023-12-15T16:48:37,054   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:48:37,054      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:48:37,054         |  ^~~~~~~
2023-12-15T16:48:37,677   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_22_calc_len_and_offsets’:
2023-12-15T16:48:37,685   moleculekit/fileformats/xtc/trr.c:16333:37: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare]
2023-12-15T16:48:37,685   16333 |       __pyx_t_6 = (__pyx_v_n_frames == __pyx_t_14);
2023-12-15T16:48:37,686         |                                     ^~
2023-12-15T16:48:57,965   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pw_11moleculekit_3trr_17TRRTrajectoryFile_17_write’:
2023-12-15T16:48:57,965   moleculekit/fileformats/xtc/trr.c:1128:40: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:48:57,965    1128 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T16:48:57,966         |                                        ^~~~~~~~~~~~~~~
2023-12-15T16:48:57,974   moleculekit/fileformats/xtc/trr.c:14241:7: note: ‘__pyx_v_status’ was declared here
2023-12-15T16:48:57,974   14241 |   int __pyx_v_status;
2023-12-15T16:48:57,974         |       ^~~~~~~~~~~~~~
2023-12-15T16:49:08,292   moleculekit/fileformats/xtc/trr.c: In function ‘__pyx_pf_11moleculekit_3trr_17TRRTrajectoryFile_12_read’:
2023-12-15T16:49:08,299   moleculekit/fileformats/xtc/trr.c:11540:19: warning: ‘__pyx_pybuffernd_forces.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,299   11540 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_forces.diminfo[2].shape)) __pyx_t_4 = 2;
2023-12-15T16:49:08,299         |                   ^
2023-12-15T16:49:08,306   moleculekit/fileformats/xtc/trr.c:11536:19: warning: ‘__pyx_pybuffernd_forces.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,306   11536 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_forces.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T16:49:08,306         |                   ^
2023-12-15T16:49:08,307   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,307    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2023-12-15T16:49:08,307         |                                                                                               ^
2023-12-15T16:49:08,313   moleculekit/fileformats/xtc/trr.c:10072:21: note: ‘__pyx_pybuffernd_forces.diminfo[0].strides’ was declared here
2023-12-15T16:49:08,313   10072 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_forces;
2023-12-15T16:49:08,313         |                     ^~~~~~~~~~~~~~~~~~~~~~~
2023-12-15T16:49:08,319   moleculekit/fileformats/xtc/trr.c:11530:59: warning: ‘__pyx_pybuffernd_forces.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,319   11530 |           __pyx_t_28 += __pyx_pybuffernd_forces.diminfo[0].shape;
2023-12-15T16:49:08,319         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T16:49:08,326   moleculekit/fileformats/xtc/trr.c:11483:19: warning: ‘__pyx_pybuffernd_vel.diminfo[2].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,326   11483 |         } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_vel.diminfo[2].shape)) __pyx_t_4 = 2;
2023-12-15T16:49:08,326         |                   ^
2023-12-15T16:49:08,333   moleculekit/fileformats/xtc/trr.c:11479:19: warning: ‘__pyx_pybuffernd_vel.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,333   11479 |         } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_vel.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T16:49:08,333         |                   ^
2023-12-15T16:49:08,334   moleculekit/fileformats/xtc/trr.c:2490:95: warning: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,334    2490 | #define __Pyx_BufPtrCContig3d(type, buf, i0, s0, i1, s1, i2, s2) ((type)((char*)buf + i0 * s0 + i1 * s1) + i2)
2023-12-15T16:49:08,334         |                                                                                               ^
2023-12-15T16:49:08,339   moleculekit/fileformats/xtc/trr.c:10088:21: note: ‘__pyx_pybuffernd_vel.diminfo[0].strides’ was declared here
2023-12-15T16:49:08,340   10088 |   __Pyx_LocalBuf_ND __pyx_pybuffernd_vel;
2023-12-15T16:49:08,340         |                     ^~~~~~~~~~~~~~~~~~~~
2023-12-15T16:49:08,346   moleculekit/fileformats/xtc/trr.c:11473:56: warning: ‘__pyx_pybuffernd_vel.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,346   11473 |           __pyx_t_28 += __pyx_pybuffernd_vel.diminfo[0].shape;
2023-12-15T16:49:08,346         |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-12-15T16:49:08,352   moleculekit/fileformats/xtc/trr.c:11872:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,352   11872 |       } else if (unlikely(__pyx_t_29 >= __pyx_pybuffernd_xyz_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T16:49:08,352         |                 ^
2023-12-15T16:49:08,359   moleculekit/fileformats/xtc/trr.c:11868:17: warning: ‘__pyx_pybuffernd_xyz_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,359   11868 |       } else if (unlikely(__pyx_t_30 >= __pyx_pybuffernd_xyz_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T16:49:08,359         |                 ^
2023-12-15T16:49:08,366   moleculekit/fileformats/xtc/trr.c:11713:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,366   11713 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_vel_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T16:49:08,366         |                   ^
2023-12-15T16:49:08,373   moleculekit/fileformats/xtc/trr.c:11709:19: warning: ‘__pyx_pybuffernd_vel_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,373   11709 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_vel_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T16:49:08,373         |                   ^
2023-12-15T16:49:08,379   moleculekit/fileformats/xtc/trr.c:11765:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[1].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,379   11765 |         } else if (unlikely(__pyx_t_36 >= __pyx_pybuffernd_forces_buffer.diminfo[1].shape)) __pyx_t_4 = 1;
2023-12-15T16:49:08,379         |                   ^
2023-12-15T16:49:08,386   moleculekit/fileformats/xtc/trr.c:11761:19: warning: ‘__pyx_pybuffernd_forces_buffer.diminfo[0].shape’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:08,386   11761 |         } else if (unlikely(__pyx_t_35 >= __pyx_pybuffernd_forces_buffer.diminfo[0].shape)) __pyx_t_4 = 0;
2023-12-15T16:49:08,386         |                   ^
2023-12-15T16:49:14,825   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:49:15,013   building 'moleculekit.dcd' extension
2023-12-15T16:49:15,014   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd
2023-12-15T16:49:15,015   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src
2023-12-15T16:49:15,016   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/dcd.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o
2023-12-15T16:49:15,346   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:49:15,346                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:49:15,346                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:49:15,346                    from moleculekit/fileformats/dcd/dcd.c:1221:
2023-12-15T16:49:15,346   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:49:15,346      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:49:15,347         |  ^~~~~~~
2023-12-15T16:49:16,373   In file included from moleculekit/fileformats/dcd/include/dcdplugin.h:1,
2023-12-15T16:49:16,373                    from moleculekit/fileformats/dcd/dcd.c:1227:
2023-12-15T16:49:16,373   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,373     474 | static int fio_write_str(fio_fd fd, const char *str) {
2023-12-15T16:49:16,374         |            ^~~~~~~~~~~~~
2023-12-15T16:49:16,374   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,374     470 | static int fio_read_int32(fio_fd fd, int *i) {
2023-12-15T16:49:16,374         |            ^~~~~~~~~~~~~~
2023-12-15T16:49:16,374   moleculekit/fileformats/dcd/include/fastio.h:466:12: warning: ‘fio_write_int32’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,374     466 | static int fio_write_int32(fio_fd fd, int i) {
2023-12-15T16:49:16,375         |            ^~~~~~~~~~~~~~~
2023-12-15T16:49:16,375   moleculekit/fileformats/dcd/include/fastio.h:457:19: warning: ‘fio_ftell’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,375     457 | static fio_size_t fio_ftell(fio_fd fd) {
2023-12-15T16:49:16,375         |                   ^~~~~~~~~
2023-12-15T16:49:16,375   moleculekit/fileformats/dcd/include/fastio.h:450:19: warning: ‘fio_fseek’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,375     450 | static fio_size_t fio_fseek(fio_fd fd, fio_size_t offset, int whence) {
2023-12-15T16:49:16,375         |                   ^~~~~~~~~
2023-12-15T16:49:16,375   moleculekit/fileformats/dcd/include/fastio.h:415:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,375     415 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
2023-12-15T16:49:16,376         |                   ^~~~~~~~~
2023-12-15T16:49:16,376   moleculekit/fileformats/dcd/include/fastio.h:394:12: warning: ‘fio_fclose’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,376     394 | static int fio_fclose(fio_fd fd) {
2023-12-15T16:49:16,376         |            ^~~~~~~~~~
2023-12-15T16:49:16,376   moleculekit/fileformats/dcd/include/fastio.h:366:12: warning: ‘fio_open’ defined but not used [-Wunused-function]
2023-12-15T16:49:16,376     366 | static int fio_open(const char *filename, int mode, fio_fd *fd) {
2023-12-15T16:49:16,376         |            ^~~~~~~~
2023-12-15T16:49:28,978   moleculekit/fileformats/dcd/dcd.c: In function ‘__pyx_pf_11moleculekit_3dcd_17DCDTrajectoryFile_18read’:
2023-12-15T16:49:28,979   moleculekit/fileformats/dcd/dcd.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:28,979    1123 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T16:49:28,979         |                                        ^~~~~~~~~~~~~~~
2023-12-15T16:49:28,984   moleculekit/fileformats/dcd/dcd.c:8003:7: note: ‘__pyx_v_i’ was declared here
2023-12-15T16:49:28,984    8003 |   int __pyx_v_i;
2023-12-15T16:49:28,984         |       ^~~~~~~~~
2023-12-15T16:49:32,210   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/dcd -Imoleculekit/fileformats/dcd/include/ -Imoleculekit/fileformats/dcd/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/dcd/src/dcdplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o
2023-12-15T16:49:32,390   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdheader’:
2023-12-15T16:49:32,391   moleculekit/fileformats/dcd/src/dcdplugin.c:150:55: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:49:32,391     150 |   else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2023-12-15T16:49:32,391         |                                                       ^~
2023-12-15T16:49:32,391   moleculekit/fileformats/dcd/src/dcdplugin.c:173:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:49:32,391     173 |       if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic)
2023-12-15T16:49:32,392         |                                                      ^~
2023-12-15T16:49:32,392   moleculekit/fileformats/dcd/src/dcdplugin.c:194:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:49:32,392     194 |     if (input_integer[0] != dcdcordmagic)
2023-12-15T16:49:32,392         |                          ^~
2023-12-15T16:49:32,395   moleculekit/fileformats/dcd/src/dcdplugin.c:409:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:49:32,395     409 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2023-12-15T16:49:32,395         |                                               ^~
2023-12-15T16:49:32,395   moleculekit/fileformats/dcd/src/dcdplugin.c:428:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-12-15T16:49:32,396     428 |     if ((input_integer[0] + input_integer[1]) != ((*N) - (*NAMNF)) * 4)
2023-12-15T16:49:32,396         |                                               ^~
2023-12-15T16:49:32,399   moleculekit/fileformats/dcd/src/dcdplugin.c: In function ‘read_dcdstep’:
2023-12-15T16:49:32,399   moleculekit/fileformats/dcd/src/dcdplugin.c:651:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:49:32,400     651 |         if (tmpbuf[i] != sizeof(float) * N)
2023-12-15T16:49:32,400         |                       ^~
2023-12-15T16:49:32,400   moleculekit/fileformats/dcd/src/dcdplugin.c:659:49: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-12-15T16:49:32,400     659 |         if ((tmpbuf[2 * i] + tmpbuf[2 * i + 1]) != sizeof(float) * N)
2023-12-15T16:49:32,400         |                                                 ^~
2023-12-15T16:49:32,423   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:55:
2023-12-15T16:49:32,423   At top level:
2023-12-15T16:49:32,423   moleculekit/fileformats/dcd/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2023-12-15T16:49:32,423      96 | static void swap2_aligned(void *v, long ndata) {
2023-12-15T16:49:32,424         |             ^~~~~~~~~~~~~
2023-12-15T16:49:32,424   moleculekit/fileformats/dcd/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2023-12-15T16:49:32,424      32 | static void swap2_unaligned(void *v, long ndata) {
2023-12-15T16:49:32,424         |             ^~~~~~~~~~~~~~~
2023-12-15T16:49:32,424   In file included from moleculekit/fileformats/dcd/src/dcdplugin.c:46:
2023-12-15T16:49:32,424   moleculekit/fileformats/dcd/include/fastio.h:474:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2023-12-15T16:49:32,424     474 | static int fio_write_str(fio_fd fd, const char *str) {
2023-12-15T16:49:32,425         |            ^~~~~~~~~~~~~
2023-12-15T16:49:32,425   moleculekit/fileformats/dcd/include/fastio.h:470:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2023-12-15T16:49:32,425     470 | static int fio_read_int32(fio_fd fd, int *i) {
2023-12-15T16:49:32,425         |            ^~~~~~~~~~~~~~
2023-12-15T16:49:33,529   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:49:33,669   building 'moleculekit.binpos' extension
2023-12-15T16:49:33,669   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos
2023-12-15T16:49:33,670   creating build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src
2023-12-15T16:49:33,671   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/binpos.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o
2023-12-15T16:49:33,995   In file included from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
2023-12-15T16:49:33,995                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-12-15T16:49:33,995                    from /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-12-15T16:49:33,996                    from moleculekit/fileformats/binpos/binpos.c:1221:
2023-12-15T16:49:33,996   /tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-12-15T16:49:33,996      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-12-15T16:49:33,996         |  ^~~~~~~
2023-12-15T16:49:47,368   moleculekit/fileformats/binpos/binpos.c: In function ‘__pyx_pw_11moleculekit_6binpos_20BINPOSTrajectoryFile_7_read’:
2023-12-15T16:49:47,373   moleculekit/fileformats/binpos/binpos.c:8026:6: warning: ‘__pyx_v_status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:47,373    8026 |   if (__pyx_t_1) {
2023-12-15T16:49:47,373         |      ^
2023-12-15T16:49:47,377   moleculekit/fileformats/binpos/binpos.c:7503:7: note: ‘__pyx_v_status’ was declared here
2023-12-15T16:49:47,377    7503 |   int __pyx_v_status;
2023-12-15T16:49:47,377         |       ^~~~~~~~~~~~~~
2023-12-15T16:49:47,378   moleculekit/fileformats/binpos/binpos.c:1123:40: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-12-15T16:49:47,378    1123 |   #define PyInt_FromLong               PyLong_FromLong
2023-12-15T16:49:47,378         |                                        ^~~~~~~~~~~~~~~
2023-12-15T16:49:47,382   moleculekit/fileformats/binpos/binpos.c:7500:7: note: ‘__pyx_v_i’ was declared here
2023-12-15T16:49:47,382    7500 |   int __pyx_v_i;
2023-12-15T16:49:47,382         |       ^~~~~~~~~
2023-12-15T16:49:49,598   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/fileformats/binpos -Imoleculekit/fileformats/binpos/include/ -Imoleculekit/fileformats/binpos/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/fileformats/binpos/src/binposplugin.c -o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o
2023-12-15T16:49:49,896   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.o build/temp.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:49:50,031   building 'moleculekit.tmalign' extension
2023-12-15T16:49:50,032   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-12-15T16:49:50,033   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-12-15T16:49:50,034   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-12-15T16:50:19,267   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-67j4cao8/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-12-15T16:50:37,616   In file included from /usr/include/c++/10/vector:72,
2023-12-15T16:50:37,616                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-15T16:50:37,616   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-12-15T16:50:37,617   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-12-15T16:50:37,617     426 |       vector<_Tp, _Alloc>::
2023-12-15T16:50:37,617         |       ^~~~~~~~~~~~~~~~~~~
2023-12-15T16:50:38,193   In file included from /usr/include/c++/10/vector:67,
2023-12-15T16:50:38,194                    from moleculekit/tmalign/tmalign_util.cpp:1245:
2023-12-15T16:50:38,194   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’:
2023-12-15T16:50:38,194   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T16:50:38,194    1198 |    _M_realloc_insert(end(), __x);
2023-12-15T16:50:38,194         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T16:50:38,195   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T16:50:38,195    1198 |    _M_realloc_insert(end(), __x);
2023-12-15T16:50:38,195         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T16:50:38,197   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-12-15T16:50:38,197    1198 |    _M_realloc_insert(end(), __x);
2023-12-15T16:50:38,197         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-12-15T16:50:40,628   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-12-15T16:50:41,101   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-12-15T16:50:41,101   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.8.17'
2023-12-15T16:50:41,102   installing to build/bdist.linux-armv7l/wheel
2023-12-15T16:50:41,102   running install
2023-12-15T16:50:41,134   running install_lib
2023-12-15T16:50:41,141   creating build/bdist.linux-armv7l
2023-12-15T16:50:41,142   creating build/bdist.linux-armv7l/wheel
2023-12-15T16:50:41,145   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,152   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T16:50:41,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T16:50:41,179   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-12-15T16:50:41,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,205   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,207   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,210   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T16:50:41,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T16:50:41,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-12-15T16:50:41,241   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T16:50:41,242   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T16:50:41,456   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-12-15T16:50:41,460   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,463   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,470   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,472   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,477   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,479   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,482   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,485   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,487   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,491   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,494   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,495   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,499   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,502   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,508   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,509   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,522   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,523   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,527   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,528   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,532   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,534   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,536   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,537   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,541   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,552   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,553   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,555   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,557   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,570   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,573   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,576   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,578   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,579   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,583   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,588   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,591   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,597   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,607   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,608   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,610   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,616   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,617   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,619   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,621   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,626   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,629   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,634   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,636   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,639   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,641   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,644   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,647   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,656   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,662   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,668   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,672   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,676   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,681   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,691   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,693   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,695   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,696   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,710   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,714   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,715   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,725   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,733   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,745   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,758   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-12-15T16:50:41,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T16:50:41,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-12-15T16:50:41,775   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-15T16:50:41,775   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-12-15T16:50:41,778   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,797   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,801   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,809   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-12-15T16:50:41,812   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,814   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,816   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,820   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T16:50:41,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T16:50:41,826   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T16:50:41,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-12-15T16:50:41,832   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:41,873   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:41,875   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T16:50:41,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T16:50:41,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-12-15T16:50:41,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:41,916   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T16:50:41,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T16:50:41,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-12-15T16:50:41,953   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:41,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:42,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:42,022   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:42,049   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T16:50:42,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T16:50:42,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-12-15T16:50:42,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-12-15T16:50:42,100   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T16:50:42,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T16:50:42,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-12-15T16:50:42,124   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T16:50:42,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T16:50:42,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-12-15T16:50:42,152   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T16:50:42,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T16:50:42,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T16:50:42,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T16:50:42,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-12-15T16:50:42,161   copying build/lib.linux-armv7l-cpython-39/moleculekit/trr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,194   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,201   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-15T16:50:42,203   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T16:50:42,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T16:50:42,206   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T16:50:42,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T16:50:42,209   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-12-15T16:50:42,211   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-12-15T16:50:42,213   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T16:50:42,214   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T16:50:42,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T16:50:42,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T16:50:42,220   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-12-15T16:50:42,223   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T16:50:42,223   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T16:50:42,225   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-12-15T16:50:42,227   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,229   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,231   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,232   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,234   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,236   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,238   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T16:50:42,239   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T16:50:42,241   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T16:50:42,243   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T16:50:42,245   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-12-15T16:50:42,247   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,249   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,251   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-12-15T16:50:42,254   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,256   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T16:50:42,257   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T16:50:42,259   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-12-15T16:50:42,280   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T16:50:42,281   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T16:50:42,282   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T16:50:42,295   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binpos.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T16:50:42,298   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T16:50:42,299   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/binposplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T16:50:42,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T16:50:42,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/include
2023-12-15T16:50:42,305   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/binposlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos
2023-12-15T16:50:42,307   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2023-12-15T16:50:42,307   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/binpos/src/binposplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/binpos/src
2023-12-15T16:50:42,310   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/utils.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T16:50:42,313   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,313   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,315   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,317   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,318   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,348   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,370   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,371   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdr_seek.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/trr_header.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/include
2023-12-15T16:50:42,383   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/trr.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,385   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/xdrlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc
2023-12-15T16:50:42,388   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,388   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,390   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdr_seek.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,392   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,394   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/xtc/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/xtc/src
2023-12-15T16:50:42,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T16:50:42,401   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T16:50:42,402   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T16:50:42,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcd.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T16:50:42,421   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/fastio.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,425   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/largefiles.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,427   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/dcdplugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,429   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/endianswap.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/include/molfile_plugin.h -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/include
2023-12-15T16:50:42,436   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/dcdlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd
2023-12-15T16:50:42,438   creating build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2023-12-15T16:50:42,440   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/dcd/src/dcdplugin.c -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats/dcd/src
2023-12-15T16:50:42,443   copying build/lib.linux-armv7l-cpython-39/moleculekit/fileformats/netcdf.py -> build/bdist.linux-armv7l/wheel/moleculekit/fileformats
2023-12-15T16:50:42,446   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,449   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,450   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,453   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,456   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,458   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,464   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,466   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/modelling.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,468   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,471   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,473   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T16:50:42,474   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T16:50:42,476   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-12-15T16:50:42,478   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,481   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-12-15T16:50:42,492   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T16:50:42,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T16:50:42,511   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T16:50:42,513   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-15T16:50:42,514   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-12-15T16:50:42,516   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-12-15T16:50:42,518   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-15T16:50:42,519   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-12-15T16:50:42,524   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,547   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T16:50:42,547   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T16:50:42,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-12-15T16:50:42,567   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,625   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,628   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,632   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,686   copying build/lib.linux-armv7l-cpython-39/moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-12-15T16:50:42,751   running install_egg_info
2023-12-15T16:50:42,759   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.8.17-py3.9.egg-info
2023-12-15T16:50:42,775   running install_scripts
2023-12-15T16:50:42,842   creating build/bdist.linux-armv7l/wheel/moleculekit-1.8.17.dist-info/WHEEL
2023-12-15T16:50:42,845   creating '/tmp/pip-wheel-q_c0linp/.tmp-w87111dz/moleculekit-1.8.17-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T16:50:42,848   adding 'moleculekit/__init__.py'
2023-12-15T16:50:42,849   adding 'moleculekit/_version.py'
2023-12-15T16:50:42,851   adding 'moleculekit/align.py'
2023-12-15T16:50:43,164   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:43,327   adding 'moleculekit/binpos.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:43,333   adding 'moleculekit/bondguesser.py'
2023-12-15T16:50:43,581   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:43,590   adding 'moleculekit/config.py'
2023-12-15T16:50:43,756   adding 'moleculekit/dcd.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:43,763   adding 'moleculekit/dihedral.py'
2023-12-15T16:50:43,764   adding 'moleculekit/distance.py'
2023-12-15T16:50:44,086   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:44,097   adding 'moleculekit/home.py'
2023-12-15T16:50:44,099   adding 'moleculekit/logging.ini'
2023-12-15T16:50:44,113   adding 'moleculekit/molecule.py'
2023-12-15T16:50:44,342   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:44,351   adding 'moleculekit/opm.py'
2023-12-15T16:50:44,353   adding 'moleculekit/periodictable.py'
2023-12-15T16:50:44,354   adding 'moleculekit/pymolgraphics.py'
2023-12-15T16:50:44,355   adding 'moleculekit/rcsb.py'
2023-12-15T16:50:44,357   adding 'moleculekit/rdkitintegration.py'
2023-12-15T16:50:44,370   adding 'moleculekit/readers.py'
2023-12-15T16:50:44,979   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:45,293   adding 'moleculekit/trr.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:45,305   adding 'moleculekit/util.py'
2023-12-15T16:50:45,306   adding 'moleculekit/version.py'
2023-12-15T16:50:45,308   adding 'moleculekit/viewer.py'
2023-12-15T16:50:45,309   adding 'moleculekit/vmd_wrapper'
2023-12-15T16:50:45,311   adding 'moleculekit/vmdgraphics.py'
2023-12-15T16:50:45,313   adding 'moleculekit/vmdviewer.py'
2023-12-15T16:50:45,568   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:45,583   adding 'moleculekit/writers.py'
2023-12-15T16:50:45,853   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:45,862   adding 'moleculekit/atomselect/__init__.py'
2023-12-15T16:50:45,864   adding 'moleculekit/atomselect/analyze.py'
2023-12-15T16:50:45,866   adding 'moleculekit/atomselect/atomselect.py'
2023-12-15T16:50:45,868   adding 'moleculekit/atomselect/languageparser.py'
2023-12-15T16:50:45,975   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-12-15T16:50:45,986   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-12-15T16:50:46,078   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-12-15T16:50:46,087   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-12-15T16:50:46,190   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-12-15T16:50:46,200   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-12-15T16:50:46,202   adding 'moleculekit/fileformats/__init__.py'
2023-12-15T16:50:46,207   adding 'moleculekit/fileformats/netcdf.py'
2023-12-15T16:50:46,209   adding 'moleculekit/fileformats/utils.py'
2023-12-15T16:50:46,270   adding 'moleculekit/fileformats/binpos/binpos.c'
2023-12-15T16:50:46,277   adding 'moleculekit/fileformats/binpos/binpos.pyx'
2023-12-15T16:50:46,279   adding 'moleculekit/fileformats/binpos/binposlib.pxd'
2023-12-15T16:50:46,280   adding 'moleculekit/fileformats/binpos/include/binposplugin.h'
2023-12-15T16:50:46,282   adding 'moleculekit/fileformats/binpos/include/largefiles.h'
2023-12-15T16:50:46,287   adding 'moleculekit/fileformats/binpos/include/molfile_plugin.h'
2023-12-15T16:50:46,289   adding 'moleculekit/fileformats/binpos/src/binposplugin.c'
2023-12-15T16:50:46,353   adding 'moleculekit/fileformats/dcd/dcd.c'
2023-12-15T16:50:46,361   adding 'moleculekit/fileformats/dcd/dcd.pyx'
2023-12-15T16:50:46,362   adding 'moleculekit/fileformats/dcd/dcdlib.pxd'
2023-12-15T16:50:46,364   adding 'moleculekit/fileformats/dcd/include/dcdplugin.h'
2023-12-15T16:50:46,366   adding 'moleculekit/fileformats/dcd/include/endianswap.h'
2023-12-15T16:50:46,367   adding 'moleculekit/fileformats/dcd/include/fastio.h'
2023-12-15T16:50:46,369   adding 'moleculekit/fileformats/dcd/include/largefiles.h'
2023-12-15T16:50:46,374   adding 'moleculekit/fileformats/dcd/include/molfile_plugin.h'
2023-12-15T16:50:46,380   adding 'moleculekit/fileformats/dcd/src/dcdplugin.c'
2023-12-15T16:50:46,475   adding 'moleculekit/fileformats/xtc/trr.c'
2023-12-15T16:50:46,486   adding 'moleculekit/fileformats/xtc/trr.pyx'
2023-12-15T16:50:46,488   adding 'moleculekit/fileformats/xtc/trrlib.pxd'
2023-12-15T16:50:46,489   adding 'moleculekit/fileformats/xtc/xdrlib.pxd'
2023-12-15T16:50:46,578   adding 'moleculekit/fileformats/xtc/xtc.cpp'
2023-12-15T16:50:46,587   adding 'moleculekit/fileformats/xtc/xtc.pyx'
2023-12-15T16:50:46,588   adding 'moleculekit/fileformats/xtc/xtclib.pxd'
2023-12-15T16:50:46,590   adding 'moleculekit/fileformats/xtc/include/trr_header.h'
2023-12-15T16:50:46,591   adding 'moleculekit/fileformats/xtc/include/xdr_seek.h'
2023-12-15T16:50:46,594   adding 'moleculekit/fileformats/xtc/include/xdrfile.h'
2023-12-15T16:50:46,595   adding 'moleculekit/fileformats/xtc/include/xdrfile_trr.h'
2023-12-15T16:50:46,596   adding 'moleculekit/fileformats/xtc/include/xdrfile_xtc.h'
2023-12-15T16:50:46,598   adding 'moleculekit/fileformats/xtc/include/xtc.h'
2023-12-15T16:50:46,599   adding 'moleculekit/fileformats/xtc/src/xdr_seek.c'
2023-12-15T16:50:46,606   adding 'moleculekit/fileformats/xtc/src/xdrfile.cpp'
2023-12-15T16:50:46,608   adding 'moleculekit/fileformats/xtc/src/xdrfile_trr.c'
2023-12-15T16:50:46,610   adding 'moleculekit/fileformats/xtc/src/xdrfile_xtc.cpp'
2023-12-15T16:50:46,612   adding 'moleculekit/fileformats/xtc/src/xtc.cpp'
2023-12-15T16:50:46,614   adding 'moleculekit/interactions/__init__.py'
2023-12-15T16:50:46,901   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:47,173   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:47,184   adding 'moleculekit/interactions/interactions.py'
2023-12-15T16:50:47,468   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:47,759   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-12-15T16:50:47,860   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-12-15T16:50:47,869   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-12-15T16:50:47,961   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-12-15T16:50:47,969   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-12-15T16:50:48,061   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-12-15T16:50:48,070   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-12-15T16:50:48,162   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-12-15T16:50:48,171   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-12-15T16:50:48,258   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-12-15T16:50:48,266   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-12-15T16:50:48,268   adding 'moleculekit/pdbx/__init__.py'
2023-12-15T16:50:48,271   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-12-15T16:50:48,274   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-12-15T16:50:48,277   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-12-15T16:50:48,278   adding 'moleculekit/pdbx/reader/__init__.py'
2023-12-15T16:50:48,280   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-12-15T16:50:48,282   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-12-15T16:50:48,283   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-12-15T16:50:48,284   adding 'moleculekit/pdbx/tests/__init__.py'
2023-12-15T16:50:48,286   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-12-15T16:50:48,287   adding 'moleculekit/pdbx/writer/__init__.py'
2023-12-15T16:50:48,289   adding 'moleculekit/ply/__init__.py'
2023-12-15T16:50:48,293   adding 'moleculekit/ply/lex.py'
2023-12-15T16:50:48,305   adding 'moleculekit/ply/yacc.py'
2023-12-15T16:50:48,307   adding 'moleculekit/projections/__init__.py'
2023-12-15T16:50:48,309   adding 'moleculekit/projections/metriccoordinate.py'
2023-12-15T16:50:48,312   adding 'moleculekit/projections/metricdihedral.py'
2023-12-15T16:50:48,316   adding 'moleculekit/projections/metricdistance.py'
2023-12-15T16:50:48,318   adding 'moleculekit/projections/metricfluctuation.py'
2023-12-15T16:50:48,320   adding 'moleculekit/projections/metricgyration.py'
2023-12-15T16:50:48,324   adding 'moleculekit/projections/metricplumed2.py'
2023-12-15T16:50:48,326   adding 'moleculekit/projections/metricrmsd.py'
2023-12-15T16:50:48,328   adding 'moleculekit/projections/metricsasa.py'
2023-12-15T16:50:48,329   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-12-15T16:50:48,331   adding 'moleculekit/projections/metricshell.py'
2023-12-15T16:50:48,333   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-12-15T16:50:48,334   adding 'moleculekit/projections/metrictmscore.py'
2023-12-15T16:50:48,336   adding 'moleculekit/projections/projection.py'
2023-12-15T16:50:48,337   adding 'moleculekit/projections/util.py'
2023-12-15T16:50:48,339   adding 'moleculekit/share/ALA.cif'
2023-12-15T16:50:48,340   adding 'moleculekit/share/backbone.cif'
2023-12-15T16:50:49,628   adding 'moleculekit/share/opm_sequences.json'
2023-12-15T16:50:49,713   adding 'moleculekit/share/atomselect/atomselect.json'
2023-12-15T16:50:49,717   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-12-15T16:50:49,718   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-12-15T16:50:49,719   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-12-15T16:50:49,720   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-12-15T16:50:49,722   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-12-15T16:50:49,723   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-12-15T16:50:49,724   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-12-15T16:50:49,725   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-12-15T16:50:49,727   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-12-15T16:50:49,728   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-12-15T16:50:49,729   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-12-15T16:50:49,730   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-12-15T16:50:49,732   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-12-15T16:50:49,733   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-12-15T16:50:49,734   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-12-15T16:50:49,735   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-12-15T16:50:49,736   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-12-15T16:50:49,738   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-12-15T16:50:49,739   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-12-15T16:50:49,740   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-12-15T16:50:49,741   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-12-15T16:50:49,743   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-12-15T16:50:49,744   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-12-15T16:50:49,745   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-12-15T16:50:49,746   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-12-15T16:50:49,747   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-12-15T16:50:49,749   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-12-15T16:50:49,750   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-12-15T16:50:49,751   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-12-15T16:50:49,752   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-12-15T16:50:49,753   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-12-15T16:50:49,755   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-12-15T16:50:49,756   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-12-15T16:50:49,757   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-12-15T16:50:49,758   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-12-15T16:50:49,760   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-12-15T16:50:49,761   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-12-15T16:50:49,762   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-12-15T16:50:49,763   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-12-15T16:50:49,765   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-12-15T16:50:49,766   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-12-15T16:50:49,767   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-12-15T16:50:49,768   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-12-15T16:50:49,769   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-12-15T16:50:49,771   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-12-15T16:50:49,772   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-12-15T16:50:49,773   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-12-15T16:50:49,774   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-12-15T16:50:49,776   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-12-15T16:50:49,777   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-12-15T16:50:49,778   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-12-15T16:50:49,780   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-12-15T16:50:49,781   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-12-15T16:50:49,782   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-12-15T16:50:49,784   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-12-15T16:50:49,785   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-12-15T16:50:49,786   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-12-15T16:50:49,787   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-12-15T16:50:49,788   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-12-15T16:50:49,789   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-12-15T16:50:49,791   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-12-15T16:50:49,792   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-12-15T16:50:49,793   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-12-15T16:50:49,794   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-12-15T16:50:49,795   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-12-15T16:50:49,797   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-12-15T16:50:49,798   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-12-15T16:50:49,799   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-12-15T16:50:49,800   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-12-15T16:50:49,802   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-12-15T16:50:49,803   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-12-15T16:50:49,804   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-12-15T16:50:49,805   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-12-15T16:50:49,806   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-12-15T16:50:49,808   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-12-15T16:50:49,809   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-12-15T16:50:49,810   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-12-15T16:50:49,811   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-12-15T16:50:49,812   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-12-15T16:50:49,814   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-12-15T16:50:49,815   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-12-15T16:50:49,816   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-12-15T16:50:49,817   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-12-15T16:50:49,818   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-12-15T16:50:49,820   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-12-15T16:50:49,821   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-12-15T16:50:49,822   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-12-15T16:50:49,823   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-12-15T16:50:49,825   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-12-15T16:50:49,826   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-12-15T16:50:49,827   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-12-15T16:50:49,828   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-12-15T16:50:49,829   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-12-15T16:50:49,831   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-12-15T16:50:49,832   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-12-15T16:50:49,833   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-12-15T16:50:49,834   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-12-15T16:50:49,835   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-12-15T16:50:49,837   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-12-15T16:50:49,838   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-12-15T16:50:49,839   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-12-15T16:50:49,840   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-12-15T16:50:49,842   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-12-15T16:50:49,843   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-12-15T16:50:49,844   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-12-15T16:50:49,845   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-12-15T16:50:49,846   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-12-15T16:50:49,848   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-12-15T16:50:49,849   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-12-15T16:50:49,850   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-12-15T16:50:49,851   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-12-15T16:50:49,852   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-12-15T16:50:49,854   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-12-15T16:50:49,855   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-12-15T16:50:49,856   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-12-15T16:50:49,857   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-12-15T16:50:49,859   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-12-15T16:50:49,860   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-12-15T16:50:49,861   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-12-15T16:50:49,862   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-12-15T16:50:49,863   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-12-15T16:50:49,865   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-12-15T16:50:49,866   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-12-15T16:50:49,867   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-12-15T16:50:49,868   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-12-15T16:50:49,869   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-12-15T16:50:49,871   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-12-15T16:50:49,872   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-12-15T16:50:49,873   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-12-15T16:50:49,874   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-12-15T16:50:49,876   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-12-15T16:50:49,877   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-12-15T16:50:49,878   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-12-15T16:50:49,879   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-12-15T16:50:49,880   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-12-15T16:50:49,882   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-12-15T16:50:49,883   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-12-15T16:50:49,884   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-12-15T16:50:49,885   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-12-15T16:50:49,886   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-12-15T16:50:49,888   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-12-15T16:50:49,889   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-12-15T16:50:49,890   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-12-15T16:50:49,891   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-12-15T16:50:49,892   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-12-15T16:50:49,893   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-12-15T16:50:49,895   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-12-15T16:50:49,896   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-12-15T16:50:49,897   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-12-15T16:50:49,898   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-12-15T16:50:49,900   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-12-15T16:50:49,901   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-12-15T16:50:49,902   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-12-15T16:50:49,903   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-12-15T16:50:49,905   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-12-15T16:50:49,906   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-12-15T16:50:49,907   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-12-15T16:50:49,908   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-12-15T16:50:49,909   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-12-15T16:50:49,911   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-12-15T16:50:49,912   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-12-15T16:50:49,913   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-12-15T16:50:49,914   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-12-15T16:50:49,916   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-12-15T16:50:49,917   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-12-15T16:50:49,918   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-12-15T16:50:49,919   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-12-15T16:50:49,921   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-12-15T16:50:49,922   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-12-15T16:50:49,923   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-12-15T16:50:49,924   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-12-15T16:50:49,925   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-12-15T16:50:49,927   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-12-15T16:50:49,928   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-12-15T16:50:49,929   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-12-15T16:50:49,931   adding 'moleculekit/smallmol/__init__.py'
2023-12-15T16:50:49,936   adding 'moleculekit/smallmol/smallmol.py'
2023-12-15T16:50:49,939   adding 'moleculekit/smallmol/smallmollib.py'
2023-12-15T16:50:49,941   adding 'moleculekit/smallmol/test_smallmol.py'
2023-12-15T16:50:49,942   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-12-15T16:50:49,944   adding 'moleculekit/smallmol/util.py'
2023-12-15T16:50:49,946   adding 'moleculekit/smallmol/tools/__init__.py'
2023-12-15T16:50:49,948   adding 'moleculekit/smallmol/tools/clustering.py'
2023-12-15T16:50:49,949   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-12-15T16:50:49,951   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-12-15T16:50:50,041   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-12-15T16:50:50,049   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-12-15T16:50:50,051   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-12-15T16:50:50,052   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-12-15T16:50:50,070   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-12-15T16:50:50,073   adding 'moleculekit/tools/__init__.py'
2023-12-15T16:50:50,075   adding 'moleculekit/tools/atomtyper.py'
2023-12-15T16:50:50,077   adding 'moleculekit/tools/autosegment.py'
2023-12-15T16:50:50,079   adding 'moleculekit/tools/crystalpacking.py'
2023-12-15T16:50:50,083   adding 'moleculekit/tools/detect.py'
2023-12-15T16:50:50,084   adding 'moleculekit/tools/docking.py'
2023-12-15T16:50:50,086   adding 'moleculekit/tools/graphalignment.py'
2023-12-15T16:50:50,088   adding 'moleculekit/tools/hhblitsprofile.py'
2023-12-15T16:50:50,089   adding 'moleculekit/tools/modelling.py'
2023-12-15T16:50:50,091   adding 'moleculekit/tools/moleculechecks.py'
2023-12-15T16:50:50,097   adding 'moleculekit/tools/preparation.py'
2023-12-15T16:50:50,100   adding 'moleculekit/tools/preparation_customres.py'
2023-12-15T16:50:50,101   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-12-15T16:50:50,104   adding 'moleculekit/tools/voxeldescriptors.py'
2023-12-15T16:50:50,106   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-12-15T16:50:50,108   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-12-15T16:50:50,199   adding 'moleculekit/wrapping/wrapping.cpp'
2023-12-15T16:50:50,208   adding 'moleculekit/wrapping/wrapping.pyx'
2023-12-15T16:50:50,210   adding 'moleculekit-1.8.17.dist-info/LICENSE'
2023-12-15T16:50:50,212   adding 'moleculekit-1.8.17.dist-info/METADATA'
2023-12-15T16:50:50,213   adding 'moleculekit-1.8.17.dist-info/WHEEL'
2023-12-15T16:50:50,214   adding 'moleculekit-1.8.17.dist-info/top_level.txt'
2023-12-15T16:50:50,219   adding 'moleculekit-1.8.17.dist-info/RECORD'
2023-12-15T16:50:50,400   removing build/bdist.linux-armv7l/wheel
2023-12-15T16:50:50,674   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-12-15T16:50:51,248   Created wheel for moleculekit: filename=moleculekit-1.8.17-cp39-cp39-linux_armv7l.whl size=14241470 sha256=c52f9eca095400d7d491afc702832a8dbfa71a6a46826bd4d01cd3808f7b3581
2023-12-15T16:50:51,249   Stored in directory: /tmp/pip-ephem-wheel-cache-_5_9es4p/wheels/e7/39/19/a7982136c635081212540d9532c7aa8474a615fc6af2007772
2023-12-15T16:50:51,276 Successfully built moleculekit
2023-12-15T16:50:51,658 Removed build tracker: '/tmp/pip-build-tracker-84wfp4fu'