2023-12-15T21:01:24,756 Created temporary directory: /tmp/pip-build-tracker-dd6huj23
2023-12-15T21:01:24,757 Initialized build tracking at /tmp/pip-build-tracker-dd6huj23
2023-12-15T21:01:24,757 Created build tracker: /tmp/pip-build-tracker-dd6huj23
2023-12-15T21:01:24,758 Entered build tracker: /tmp/pip-build-tracker-dd6huj23
2023-12-15T21:01:24,758 Created temporary directory: /tmp/pip-wheel-eoiyc8sm
2023-12-15T21:01:24,762 Created temporary directory: /tmp/pip-ephem-wheel-cache-y4q3foq4
2023-12-15T21:01:24,784 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-12-15T21:01:24,787 2 location(s) to search for versions of snipgenie:
2023-12-15T21:01:24,787 * https://pypi.org/simple/snipgenie/
2023-12-15T21:01:24,787 * https://www.piwheels.org/simple/snipgenie/
2023-12-15T21:01:24,788 Fetching project page and analyzing links: https://pypi.org/simple/snipgenie/
2023-12-15T21:01:24,789 Getting page https://pypi.org/simple/snipgenie/
2023-12-15T21:01:24,790 Found index url https://pypi.org/simple/
2023-12-15T21:01:25,001 Fetched page https://pypi.org/simple/snipgenie/ as application/vnd.pypi.simple.v1+json
2023-12-15T21:01:25,003   Found link https://files.pythonhosted.org/packages/79/4a/96b0139ad8dbb883dd21a254ca6db4ebe82b50d49687ff2845e03e9d1b07/snipgenie-0.4.0.tar.gz (from https://pypi.org/simple/snipgenie/), version: 0.4.0
2023-12-15T21:01:25,004   Found link https://files.pythonhosted.org/packages/f1/b0/1c88462ab786ef45c0e34be83afff7ff96e5d2c099ebb3481f7dd5a38b28/snipgenie-0.5.0.tar.gz (from https://pypi.org/simple/snipgenie/), version: 0.5.0
2023-12-15T21:01:25,004   Found link https://files.pythonhosted.org/packages/f1/5b/8f5ca64dc0c9107664fd6d775b07f013afe161199d09edeeb42e57a8d613/snipgenie-0.6.0.tar.gz (from https://pypi.org/simple/snipgenie/), version: 0.6.0
2023-12-15T21:01:25,005 Fetching project page and analyzing links: https://www.piwheels.org/simple/snipgenie/
2023-12-15T21:01:25,006 Getting page https://www.piwheels.org/simple/snipgenie/
2023-12-15T21:01:25,007 Found index url https://www.piwheels.org/simple/
2023-12-15T21:01:25,268 Fetched page https://www.piwheels.org/simple/snipgenie/ as text/html
2023-12-15T21:01:25,270   Skipping link: No binaries permitted for snipgenie: https://www.piwheels.org/simple/snipgenie/snipgenie-0.5.0-py3-none-any.whl#sha256=e99637f66020eb26d7ec71cbfc4a3205e6dfab0acf98ed75880b084a4037c26c (from https://www.piwheels.org/simple/snipgenie/)
2023-12-15T21:01:25,271   Skipping link: No binaries permitted for snipgenie: https://www.piwheels.org/simple/snipgenie/snipgenie-0.4.0-py3-none-any.whl#sha256=ad67e176ad0d7e603c2abe0711ac264a685314c0983acdddeb38ac462875eb95 (from https://www.piwheels.org/simple/snipgenie/)
2023-12-15T21:01:25,272 Skipping link: not a file: https://www.piwheels.org/simple/snipgenie/
2023-12-15T21:01:25,273 Skipping link: not a file: https://pypi.org/simple/snipgenie/
2023-12-15T21:01:25,300 Given no hashes to check 1 links for project 'snipgenie': discarding no candidates
2023-12-15T21:01:25,328 Collecting snipgenie==0.6.0
2023-12-15T21:01:25,331   Created temporary directory: /tmp/pip-unpack-awc2xphg
2023-12-15T21:01:25,579   Downloading snipgenie-0.6.0.tar.gz (32.0 MB)
2023-12-15T21:01:36,566   Added snipgenie==0.6.0 from https://files.pythonhosted.org/packages/f1/5b/8f5ca64dc0c9107664fd6d775b07f013afe161199d09edeeb42e57a8d613/snipgenie-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-dd6huj23'
2023-12-15T21:01:36,568   Running setup.py (path:/tmp/pip-wheel-eoiyc8sm/snipgenie_5e6eba85b1f9472d8ba460f7ca90d37e/setup.py) egg_info for package snipgenie
2023-12-15T21:01:36,569   Created temporary directory: /tmp/pip-pip-egg-info-sptx6lxr
2023-12-15T21:01:36,570   Preparing metadata (setup.py): started
2023-12-15T21:01:36,571   Running command python setup.py egg_info
2023-12-15T21:01:37,551   running egg_info
2023-12-15T21:01:37,552   creating /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info
2023-12-15T21:01:37,576   writing /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/PKG-INFO
2023-12-15T21:01:37,580   writing dependency_links to /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/dependency_links.txt
2023-12-15T21:01:37,582   writing entry points to /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/entry_points.txt
2023-12-15T21:01:37,584   writing requirements to /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/requires.txt
2023-12-15T21:01:37,585   writing top-level names to /tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/top_level.txt
2023-12-15T21:01:37,586   writing manifest file '/tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/SOURCES.txt'
2023-12-15T21:01:37,675   reading manifest file '/tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/SOURCES.txt'
2023-12-15T21:01:37,680   writing manifest file '/tmp/pip-pip-egg-info-sptx6lxr/snipgenie.egg-info/SOURCES.txt'
2023-12-15T21:01:37,804   Preparing metadata (setup.py): finished with status 'done'
2023-12-15T21:01:37,808   Source in /tmp/pip-wheel-eoiyc8sm/snipgenie_5e6eba85b1f9472d8ba460f7ca90d37e has version 0.6.0, which satisfies requirement snipgenie==0.6.0 from https://files.pythonhosted.org/packages/f1/5b/8f5ca64dc0c9107664fd6d775b07f013afe161199d09edeeb42e57a8d613/snipgenie-0.6.0.tar.gz
2023-12-15T21:01:37,809   Removed snipgenie==0.6.0 from https://files.pythonhosted.org/packages/f1/5b/8f5ca64dc0c9107664fd6d775b07f013afe161199d09edeeb42e57a8d613/snipgenie-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-dd6huj23'
2023-12-15T21:01:37,814 Created temporary directory: /tmp/pip-unpack-0eh6kid4
2023-12-15T21:01:37,815 Created temporary directory: /tmp/pip-unpack-19d9vs7u
2023-12-15T21:01:37,825 Building wheels for collected packages: snipgenie
2023-12-15T21:01:37,829   Created temporary directory: /tmp/pip-wheel-xu6qxf9k
2023-12-15T21:01:37,830   Building wheel for snipgenie (setup.py): started
2023-12-15T21:01:37,831   Destination directory: /tmp/pip-wheel-xu6qxf9k
2023-12-15T21:01:37,831   Running command python setup.py bdist_wheel
2023-12-15T21:01:38,809   running bdist_wheel
2023-12-15T21:01:38,904   running build
2023-12-15T21:01:38,905   running build_py
2023-12-15T21:01:38,933   creating build
2023-12-15T21:01:38,933   creating build/lib
2023-12-15T21:01:38,934   creating build/lib/snipgenie
2023-12-15T21:01:38,935   copying snipgenie/tools.py -> build/lib/snipgenie
2023-12-15T21:01:38,939   copying snipgenie/app.py -> build/lib/snipgenie
2023-12-15T21:01:38,941   copying snipgenie/db.py -> build/lib/snipgenie
2023-12-15T21:01:38,944   copying snipgenie/wgmlst.py -> build/lib/snipgenie
2023-12-15T21:01:38,946   copying snipgenie/fastq_generator.py -> build/lib/snipgenie
2023-12-15T21:01:38,948   copying snipgenie/plotting.py -> build/lib/snipgenie
2023-12-15T21:01:38,951   copying snipgenie/gui.py -> build/lib/snipgenie
2023-12-15T21:01:38,954   copying snipgenie/pybam.py -> build/lib/snipgenie
2023-12-15T21:01:38,957   copying snipgenie/tables.py -> build/lib/snipgenie
2023-12-15T21:01:38,960   copying snipgenie/rdiff.py -> build/lib/snipgenie
2023-12-15T21:01:38,962   copying snipgenie/tests.py -> build/lib/snipgenie
2023-12-15T21:01:38,964   copying snipgenie/jstester.py -> build/lib/snipgenie
2023-12-15T21:01:38,966   copying snipgenie/aligners.py -> build/lib/snipgenie
2023-12-15T21:01:38,968   copying snipgenie/treeview.py -> build/lib/snipgenie
2023-12-15T21:01:38,971   copying snipgenie/snp_typing.py -> build/lib/snipgenie
2023-12-15T21:01:38,973   copying snipgenie/core.py -> build/lib/snipgenie
2023-12-15T21:01:38,974   copying snipgenie/qt.py -> build/lib/snipgenie
2023-12-15T21:01:38,976   copying snipgenie/plugin.py -> build/lib/snipgenie
2023-12-15T21:01:38,978   copying snipgenie/clustering.py -> build/lib/snipgenie
2023-12-15T21:01:38,980   copying snipgenie/browser.py -> build/lib/snipgenie
2023-12-15T21:01:38,982   copying snipgenie/simulate.py -> build/lib/snipgenie
2023-12-15T21:01:38,984   copying snipgenie/widgets.py -> build/lib/snipgenie
2023-12-15T21:01:38,987   copying snipgenie/gis.py -> build/lib/snipgenie
2023-12-15T21:01:38,990   copying snipgenie/__init__.py -> build/lib/snipgenie
2023-12-15T21:01:38,991   copying snipgenie/trees.py -> build/lib/snipgenie
2023-12-15T21:01:39,001   creating build/lib/snipgenie/data
2023-12-15T21:01:39,002   copying snipgenie/data/Mbovis_AF212297.fa.ann -> build/lib/snipgenie/data
2023-12-15T21:01:39,004   copying snipgenie/data/Mbovis_AF212297.fa.bwt -> build/lib/snipgenie/data
2023-12-15T21:01:39,070   copying snipgenie/data/Sars-Cov-2.gb.gff -> build/lib/snipgenie/data
2023-12-15T21:01:39,073   copying snipgenie/data/Msmeg-MC2.gb -> build/lib/snipgenie/data
2023-12-15T21:01:39,320   copying snipgenie/data/Mbovis_AF212297.fa.sa -> build/lib/snipgenie/data
2023-12-15T21:01:39,356   copying snipgenie/data/MAP-K10.gb.gff -> build/lib/snipgenie/data
2023-12-15T21:01:39,396   copying snipgenie/data/MTB-H37Rv.gb -> build/lib/snipgenie/data
2023-12-15T21:01:39,547   copying snipgenie/data/Mbovis_AF212297_proteins.fa.pto -> build/lib/snipgenie/data
2023-12-15T21:01:39,549   copying snipgenie/data/Mbovis_AF212297.gb.gff -> build/lib/snipgenie/data
2023-12-15T21:01:39,583   copying snipgenie/data/Mbovis_AF212297_proteins.fa -> build/lib/snipgenie/data
2023-12-15T21:01:39,610   copying snipgenie/data/Mbovis_AF212297.fa.pac -> build/lib/snipgenie/data
2023-12-15T21:01:39,631   copying snipgenie/data/Mbovis_AF212297.gb -> build/lib/snipgenie/data
2023-12-15T21:01:39,841   copying snipgenie/data/Mbovis.org_db.csv -> build/lib/snipgenie/data
2023-12-15T21:01:39,847   copying snipgenie/data/Mpbovis-PG45.fa -> build/lib/snipgenie/data
2023-12-15T21:01:39,865   copying snipgenie/data/RD.csv -> build/lib/snipgenie/data
2023-12-15T21:01:39,867   copying snipgenie/data/dr_spacers_blast.txt -> build/lib/snipgenie/data
2023-12-15T21:01:39,871   copying snipgenie/data/Mbovis_AF212297_proteins.fa.psq -> build/lib/snipgenie/data
2023-12-15T21:01:39,907   copying snipgenie/data/MTB-H37Rv_mask.bed -> build/lib/snipgenie/data
2023-12-15T21:01:39,909   copying snipgenie/data/MTB-H37Rv.gb.gff -> build/lib/snipgenie/data
2023-12-15T21:01:39,938   copying snipgenie/data/Msmeg-MC2.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,044   copying snipgenie/data/MAP-K10.gb -> build/lib/snipgenie/data
2023-12-15T21:01:40,203   copying snipgenie/data/Msmeg-MC2.gb.gff -> build/lib/snipgenie/data
2023-12-15T21:01:40,271   copying snipgenie/data/Mbovis_csq_format.gff -> build/lib/snipgenie/data
2023-12-15T21:01:40,312   copying snipgenie/data/Mpbovis-PG45.gb -> build/lib/snipgenie/data
2023-12-15T21:01:40,349   copying snipgenie/data/Mbovis_AF212297_proteins.fa.phr -> build/lib/snipgenie/data
2023-12-15T21:01:40,359   copying snipgenie/data/Mbovis_AF212297_proteins.fa.pdb -> build/lib/snipgenie/data
2023-12-15T21:01:40,362   copying snipgenie/data/Mbovis_AF212297.gff -> build/lib/snipgenie/data
2023-12-15T21:01:40,476   copying snipgenie/data/MAP-K10.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,545   copying snipgenie/data/Mbovis_AF212297.fa.fai -> build/lib/snipgenie/data
2023-12-15T21:01:40,547   copying snipgenie/data/Mbovis_AF212297.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,615   copying snipgenie/data/MTB-H37Rv.fa.fai -> build/lib/snipgenie/data
2023-12-15T21:01:40,618   copying snipgenie/data/Sars-Cov-2.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,621   copying snipgenie/data/RD_rules.csv -> build/lib/snipgenie/data
2023-12-15T21:01:40,626   copying snipgenie/data/Mbovis_AF212297_proteins.fa.ptf -> build/lib/snipgenie/data
2023-12-15T21:01:40,629   copying snipgenie/data/Mbovis_AF212297_proteins.fa.pot -> build/lib/snipgenie/data
2023-12-15T21:01:40,633   copying snipgenie/data/Sars-Cov-2.gb -> build/lib/snipgenie/data
2023-12-15T21:01:40,637   copying snipgenie/data/Mbovis_AF212297.fa.amb -> build/lib/snipgenie/data
2023-12-15T21:01:40,639   copying snipgenie/data/Mbovis_AF212297_mask.bed -> build/lib/snipgenie/data
2023-12-15T21:01:40,642   copying snipgenie/data/MTB-H37Rv.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,712   copying snipgenie/data/dr_spacers.fa -> build/lib/snipgenie/data
2023-12-15T21:01:40,714   copying snipgenie/data/Mbovis_AF212297_proteins.fa.pin -> build/lib/snipgenie/data
2023-12-15T21:01:40,717   copying snipgenie/logo.png -> build/lib/snipgenie
2023-12-15T21:01:40,720   copying snipgenie/description.txt -> build/lib/snipgenie
2023-12-15T21:01:40,722   creating build/lib/snipgenie/styles
2023-12-15T21:01:40,723   copying snipgenie/styles/light.qss -> build/lib/snipgenie/styles
2023-12-15T21:01:40,725   copying snipgenie/styles/dark.qss -> build/lib/snipgenie/styles
2023-12-15T21:01:40,728   creating build/lib/snipgenie/icons
2023-12-15T21:01:40,729   copying snipgenie/icons/arrow-up.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,732   copying snipgenie/icons/copy.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,736   copying snipgenie/icons/open.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,739   copying snipgenie/icons/arrow-left.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,742   copying snipgenie/icons/reload.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,745   copying snipgenie/icons/preferences-system.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,748   copying snipgenie/icons/plot-map.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,751   copying snipgenie/icons/phylogeny.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,754   copying snipgenie/icons/arrow-right.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,757   copying snipgenie/icons/arrow-down.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,760   copying snipgenie/icons/delete.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,763   copying snipgenie/icons/snp-viewer.png -> build/lib/snipgenie/icons
2023-12-15T21:01:40,766   creating build/lib/snipgenie/plugins
2023-12-15T21:01:40,767   copying snipgenie/plugins/heterozygosity.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,770   copying snipgenie/plugins/example.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,772   copying snipgenie/plugins/contamination.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,774   copying snipgenie/plugins/filerename.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,777   copying snipgenie/plugins/rdanalysis.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,779   copying snipgenie/plugins/strain_typing.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,782   copying snipgenie/plugins/testing.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,784   copying snipgenie/plugins/spoligotyping.py -> build/lib/snipgenie/plugins
2023-12-15T21:01:40,787   creating build/lib/snipgenie/plugins/icons
2023-12-15T21:01:40,787   copying snipgenie/plugins/icons/tests.png -> build/lib/snipgenie/plugins/icons
2023-12-15T21:01:40,790   copying snipgenie/plugins/icons/filerename.png -> build/lib/snipgenie/plugins/icons
2023-12-15T21:01:40,794   copying snipgenie/plugins/icons/contam.png -> build/lib/snipgenie/plugins/icons
2023-12-15T21:01:40,825   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2023-12-15T21:01:40,826   !!

2023-12-15T21:01:40,827           ********************************************************************************
2023-12-15T21:01:40,827           Please avoid running ``setup.py`` directly.
2023-12-15T21:01:40,828           Instead, use pypa/build, pypa/installer or other
2023-12-15T21:01:40,828           standards-based tools.

2023-12-15T21:01:40,829           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2023-12-15T21:01:40,830           ********************************************************************************

2023-12-15T21:01:40,831   !!
2023-12-15T21:01:40,832     self.initialize_options()
2023-12-15T21:01:40,851   installing to build/bdist.linux-armv7l/wheel
2023-12-15T21:01:40,852   running install
2023-12-15T21:01:40,876   running install_lib
2023-12-15T21:01:40,902   creating build/bdist.linux-armv7l
2023-12-15T21:01:40,902   creating build/bdist.linux-armv7l/wheel
2023-12-15T21:01:40,904   creating build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:40,906   copying build/lib/snipgenie/tools.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:40,910   creating build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:40,911   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.ann -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:40,913   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.bwt -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:40,979   copying build/lib/snipgenie/data/Sars-Cov-2.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:40,982   copying build/lib/snipgenie/data/Msmeg-MC2.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,216   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.sa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,249   copying build/lib/snipgenie/data/MAP-K10.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,290   copying build/lib/snipgenie/data/MTB-H37Rv.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,447   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.pto -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,449   copying build/lib/snipgenie/data/Mbovis_AF212297.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,485   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,511   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.pac -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,531   copying build/lib/snipgenie/data/Mbovis_AF212297.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,754   copying build/lib/snipgenie/data/Mbovis.org_db.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,760   copying build/lib/snipgenie/data/Mpbovis-PG45.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,781   copying build/lib/snipgenie/data/RD.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,784   copying build/lib/snipgenie/data/dr_spacers_blast.txt -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,788   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.psq -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,810   copying build/lib/snipgenie/data/MTB-H37Rv_mask.bed -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,812   copying build/lib/snipgenie/data/MTB-H37Rv.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,840   copying build/lib/snipgenie/data/Msmeg-MC2.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:41,955   copying build/lib/snipgenie/data/MAP-K10.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,111   copying build/lib/snipgenie/data/Msmeg-MC2.gb.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,174   copying build/lib/snipgenie/data/Mbovis_csq_format.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,212   copying build/lib/snipgenie/data/Mpbovis-PG45.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,249   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.phr -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,259   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.pdb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,262   copying build/lib/snipgenie/data/Mbovis_AF212297.gff -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,367   copying build/lib/snipgenie/data/MAP-K10.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,440   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.fai -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,442   copying build/lib/snipgenie/data/Mbovis_AF212297.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,511   copying build/lib/snipgenie/data/MTB-H37Rv.fa.fai -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,513   copying build/lib/snipgenie/data/Sars-Cov-2.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,516   copying build/lib/snipgenie/data/RD_rules.csv -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,518   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.ptf -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,521   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.pot -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,524   copying build/lib/snipgenie/data/Sars-Cov-2.gb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,528   copying build/lib/snipgenie/data/Mbovis_AF212297.fa.amb -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,530   copying build/lib/snipgenie/data/Mbovis_AF212297_mask.bed -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,533   copying build/lib/snipgenie/data/MTB-H37Rv.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,614   copying build/lib/snipgenie/data/dr_spacers.fa -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,616   copying build/lib/snipgenie/data/Mbovis_AF212297_proteins.fa.pin -> build/bdist.linux-armv7l/wheel/snipgenie/data
2023-12-15T21:01:42,619   copying build/lib/snipgenie/app.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,622   copying build/lib/snipgenie/db.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,624   copying build/lib/snipgenie/description.txt -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,626   copying build/lib/snipgenie/wgmlst.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,629   copying build/lib/snipgenie/fastq_generator.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,632   copying build/lib/snipgenie/plotting.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,635   copying build/lib/snipgenie/gui.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,639   copying build/lib/snipgenie/pybam.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,643   copying build/lib/snipgenie/tables.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,648   creating build/bdist.linux-armv7l/wheel/snipgenie/styles
2023-12-15T21:01:42,649   copying build/lib/snipgenie/styles/light.qss -> build/bdist.linux-armv7l/wheel/snipgenie/styles
2023-12-15T21:01:42,652   copying build/lib/snipgenie/styles/dark.qss -> build/bdist.linux-armv7l/wheel/snipgenie/styles
2023-12-15T21:01:42,655   copying build/lib/snipgenie/rdiff.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,658   copying build/lib/snipgenie/tests.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,660   copying build/lib/snipgenie/jstester.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,662   copying build/lib/snipgenie/aligners.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,666   creating build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,667   copying build/lib/snipgenie/icons/arrow-up.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,670   copying build/lib/snipgenie/icons/copy.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,674   copying build/lib/snipgenie/icons/open.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,677   copying build/lib/snipgenie/icons/arrow-left.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,680   copying build/lib/snipgenie/icons/reload.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,683   copying build/lib/snipgenie/icons/preferences-system.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,686   copying build/lib/snipgenie/icons/plot-map.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,689   copying build/lib/snipgenie/icons/phylogeny.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,691   copying build/lib/snipgenie/icons/arrow-right.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,694   copying build/lib/snipgenie/icons/arrow-down.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,697   copying build/lib/snipgenie/icons/delete.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,700   copying build/lib/snipgenie/icons/snp-viewer.png -> build/bdist.linux-armv7l/wheel/snipgenie/icons
2023-12-15T21:01:42,703   copying build/lib/snipgenie/treeview.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,705   copying build/lib/snipgenie/snp_typing.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,708   creating build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,709   copying build/lib/snipgenie/plugins/heterozygosity.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,711   copying build/lib/snipgenie/plugins/example.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,713   creating build/bdist.linux-armv7l/wheel/snipgenie/plugins/icons
2023-12-15T21:01:42,714   copying build/lib/snipgenie/plugins/icons/tests.png -> build/bdist.linux-armv7l/wheel/snipgenie/plugins/icons
2023-12-15T21:01:42,717   copying build/lib/snipgenie/plugins/icons/filerename.png -> build/bdist.linux-armv7l/wheel/snipgenie/plugins/icons
2023-12-15T21:01:42,720   copying build/lib/snipgenie/plugins/icons/contam.png -> build/bdist.linux-armv7l/wheel/snipgenie/plugins/icons
2023-12-15T21:01:42,724   copying build/lib/snipgenie/plugins/contamination.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,726   copying build/lib/snipgenie/plugins/filerename.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,728   copying build/lib/snipgenie/plugins/rdanalysis.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,731   copying build/lib/snipgenie/plugins/strain_typing.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,733   copying build/lib/snipgenie/plugins/testing.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,735   copying build/lib/snipgenie/plugins/spoligotyping.py -> build/bdist.linux-armv7l/wheel/snipgenie/plugins
2023-12-15T21:01:42,738   copying build/lib/snipgenie/core.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,740   copying build/lib/snipgenie/qt.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,741   copying build/lib/snipgenie/plugin.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,743   copying build/lib/snipgenie/clustering.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,746   copying build/lib/snipgenie/browser.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,748   copying build/lib/snipgenie/simulate.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,750   copying build/lib/snipgenie/widgets.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,754   copying build/lib/snipgenie/gis.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,756   copying build/lib/snipgenie/logo.png -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,759   copying build/lib/snipgenie/__init__.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,760   copying build/lib/snipgenie/trees.py -> build/bdist.linux-armv7l/wheel/snipgenie
2023-12-15T21:01:42,762   running install_egg_info
2023-12-15T21:01:42,822   running egg_info
2023-12-15T21:01:42,846   writing snipgenie.egg-info/PKG-INFO
2023-12-15T21:01:42,849   writing dependency_links to snipgenie.egg-info/dependency_links.txt
2023-12-15T21:01:42,851   writing entry points to snipgenie.egg-info/entry_points.txt
2023-12-15T21:01:42,852   writing requirements to snipgenie.egg-info/requires.txt
2023-12-15T21:01:42,853   writing top-level names to snipgenie.egg-info/top_level.txt
2023-12-15T21:01:42,888   reading manifest file 'snipgenie.egg-info/SOURCES.txt'
2023-12-15T21:01:42,897   writing manifest file 'snipgenie.egg-info/SOURCES.txt'
2023-12-15T21:01:42,899   Copying snipgenie.egg-info to build/bdist.linux-armv7l/wheel/snipgenie-0.6.0-py3.11.egg-info
2023-12-15T21:01:42,910   running install_scripts
2023-12-15T21:01:42,924   creating build/bdist.linux-armv7l/wheel/snipgenie-0.6.0.dist-info/WHEEL
2023-12-15T21:01:42,926   creating '/tmp/pip-wheel-xu6qxf9k/snipgenie-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-12-15T21:01:42,928   adding 'snipgenie/__init__.py'
2023-12-15T21:01:42,930   adding 'snipgenie/aligners.py'
2023-12-15T21:01:42,935   adding 'snipgenie/app.py'
2023-12-15T21:01:42,937   adding 'snipgenie/browser.py'
2023-12-15T21:01:42,939   adding 'snipgenie/clustering.py'
2023-12-15T21:01:42,941   adding 'snipgenie/core.py'
2023-12-15T21:01:42,942   adding 'snipgenie/db.py'
2023-12-15T21:01:42,944   adding 'snipgenie/description.txt'
2023-12-15T21:01:42,946   adding 'snipgenie/fastq_generator.py'
2023-12-15T21:01:42,949   adding 'snipgenie/gis.py'
2023-12-15T21:01:42,957   adding 'snipgenie/gui.py'
2023-12-15T21:01:42,959   adding 'snipgenie/jstester.py'
2023-12-15T21:01:42,961   adding 'snipgenie/logo.png'
2023-12-15T21:01:42,964   adding 'snipgenie/plotting.py'
2023-12-15T21:01:42,966   adding 'snipgenie/plugin.py'
2023-12-15T21:01:42,971   adding 'snipgenie/pybam.py'
2023-12-15T21:01:42,972   adding 'snipgenie/qt.py'
2023-12-15T21:01:42,974   adding 'snipgenie/rdiff.py'
2023-12-15T21:01:42,976   adding 'snipgenie/simulate.py'
2023-12-15T21:01:42,977   adding 'snipgenie/snp_typing.py'
2023-12-15T21:01:42,982   adding 'snipgenie/tables.py'
2023-12-15T21:01:42,983   adding 'snipgenie/tests.py'
2023-12-15T21:01:42,989   adding 'snipgenie/tools.py'
2023-12-15T21:01:42,991   adding 'snipgenie/trees.py'
2023-12-15T21:01:42,994   adding 'snipgenie/treeview.py'
2023-12-15T21:01:42,996   adding 'snipgenie/wgmlst.py'
2023-12-15T21:01:43,003   adding 'snipgenie/widgets.py'
2023-12-15T21:01:45,503   adding 'snipgenie/data/MAP-K10.fa'
2023-12-15T21:01:49,338   adding 'snipgenie/data/MAP-K10.gb'
2023-12-15T21:01:49,545   adding 'snipgenie/data/MAP-K10.gb.gff'
2023-12-15T21:01:51,886   adding 'snipgenie/data/MTB-H37Rv.fa'
2023-12-15T21:01:51,915   adding 'snipgenie/data/MTB-H37Rv.fa.fai'
2023-12-15T21:01:55,525   adding 'snipgenie/data/MTB-H37Rv.gb'
2023-12-15T21:01:55,717   adding 'snipgenie/data/MTB-H37Rv.gb.gff'
2023-12-15T21:01:55,731   adding 'snipgenie/data/MTB-H37Rv_mask.bed'
2023-12-15T21:01:55,764   adding 'snipgenie/data/Mbovis.org_db.csv'
2023-12-15T21:01:58,063   adding 'snipgenie/data/Mbovis_AF212297.fa'
2023-12-15T21:01:58,091   adding 'snipgenie/data/Mbovis_AF212297.fa.amb'
2023-12-15T21:01:58,092   adding 'snipgenie/data/Mbovis_AF212297.fa.ann'
2023-12-15T21:01:58,808   adding 'snipgenie/data/Mbovis_AF212297.fa.bwt'
2023-12-15T21:01:58,837   adding 'snipgenie/data/Mbovis_AF212297.fa.fai'
2023-12-15T21:01:58,982   adding 'snipgenie/data/Mbovis_AF212297.fa.pac'
2023-12-15T21:01:59,849   adding 'snipgenie/data/Mbovis_AF212297.fa.sa'
2023-12-15T21:02:03,761   adding 'snipgenie/data/Mbovis_AF212297.gb'
2023-12-15T21:02:04,003   adding 'snipgenie/data/Mbovis_AF212297.gb.gff'
2023-12-15T21:02:04,650   adding 'snipgenie/data/Mbovis_AF212297.gff'
2023-12-15T21:02:04,693   adding 'snipgenie/data/Mbovis_AF212297_mask.bed'
2023-12-15T21:02:04,970   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa'
2023-12-15T21:02:04,982   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.pdb'
2023-12-15T21:02:05,029   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.phr'
2023-12-15T21:02:05,038   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.pin'
2023-12-15T21:02:05,046   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.pot'
2023-12-15T21:02:05,306   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.psq'
2023-12-15T21:02:05,316   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.ptf'
2023-12-15T21:02:05,321   adding 'snipgenie/data/Mbovis_AF212297_proteins.fa.pto'
2023-12-15T21:02:05,471   adding 'snipgenie/data/Mbovis_csq_format.gff'
2023-12-15T21:02:06,007   adding 'snipgenie/data/Mpbovis-PG45.fa'
2023-12-15T21:02:06,804   adding 'snipgenie/data/Mpbovis-PG45.gb'
2023-12-15T21:02:10,417   adding 'snipgenie/data/Msmeg-MC2.fa'
2023-12-15T21:02:16,094   adding 'snipgenie/data/Msmeg-MC2.gb'
2023-12-15T21:02:16,413   adding 'snipgenie/data/Msmeg-MC2.gb.gff'
2023-12-15T21:02:16,437   adding 'snipgenie/data/RD.csv'
2023-12-15T21:02:16,439   adding 'snipgenie/data/RD_rules.csv'
2023-12-15T21:02:16,454   adding 'snipgenie/data/Sars-Cov-2.fa'
2023-12-15T21:02:16,475   adding 'snipgenie/data/Sars-Cov-2.gb'
2023-12-15T21:02:16,477   adding 'snipgenie/data/Sars-Cov-2.gb.gff'
2023-12-15T21:02:16,479   adding 'snipgenie/data/dr_spacers.fa'
2023-12-15T21:02:16,488   adding 'snipgenie/data/dr_spacers_blast.txt'
2023-12-15T21:02:16,495   adding 'snipgenie/icons/arrow-down.png'
2023-12-15T21:02:16,501   adding 'snipgenie/icons/arrow-left.png'
2023-12-15T21:02:16,506   adding 'snipgenie/icons/arrow-right.png'
2023-12-15T21:02:16,512   adding 'snipgenie/icons/arrow-up.png'
2023-12-15T21:02:16,521   adding 'snipgenie/icons/copy.png'
2023-12-15T21:02:16,528   adding 'snipgenie/icons/delete.png'
2023-12-15T21:02:16,535   adding 'snipgenie/icons/open.png'
2023-12-15T21:02:16,538   adding 'snipgenie/icons/phylogeny.png'
2023-12-15T21:02:16,545   adding 'snipgenie/icons/plot-map.png'
2023-12-15T21:02:16,551   adding 'snipgenie/icons/preferences-system.png'
2023-12-15T21:02:16,556   adding 'snipgenie/icons/reload.png'
2023-12-15T21:02:16,559   adding 'snipgenie/icons/snp-viewer.png'
2023-12-15T21:02:16,562   adding 'snipgenie/plugins/contamination.py'
2023-12-15T21:02:16,564   adding 'snipgenie/plugins/example.py'
2023-12-15T21:02:16,566   adding 'snipgenie/plugins/filerename.py'
2023-12-15T21:02:16,568   adding 'snipgenie/plugins/heterozygosity.py'
2023-12-15T21:02:16,570   adding 'snipgenie/plugins/rdanalysis.py'
2023-12-15T21:02:16,571   adding 'snipgenie/plugins/spoligotyping.py'
2023-12-15T21:02:16,573   adding 'snipgenie/plugins/strain_typing.py'
2023-12-15T21:02:16,575   adding 'snipgenie/plugins/testing.py'
2023-12-15T21:02:16,584   adding 'snipgenie/plugins/icons/contam.png'
2023-12-15T21:02:16,592   adding 'snipgenie/plugins/icons/filerename.png'
2023-12-15T21:02:16,597   adding 'snipgenie/plugins/icons/tests.png'
2023-12-15T21:02:16,601   adding 'snipgenie/styles/dark.qss'
2023-12-15T21:02:16,604   adding 'snipgenie/styles/light.qss'
2023-12-15T21:02:16,607   adding 'snipgenie-0.6.0.dist-info/METADATA'
2023-12-15T21:02:16,608   adding 'snipgenie-0.6.0.dist-info/WHEEL'
2023-12-15T21:02:16,609   adding 'snipgenie-0.6.0.dist-info/entry_points.txt'
2023-12-15T21:02:16,610   adding 'snipgenie-0.6.0.dist-info/top_level.txt'
2023-12-15T21:02:16,612   adding 'snipgenie-0.6.0.dist-info/RECORD'
2023-12-15T21:02:16,774   removing build/bdist.linux-armv7l/wheel
2023-12-15T21:02:16,942   Building wheel for snipgenie (setup.py): finished with status 'done'
2023-12-15T21:02:17,642   Created wheel for snipgenie: filename=snipgenie-0.6.0-py3-none-any.whl size=32757108 sha256=8438375b1c3328288c6e9790269044f4c416a17ea32d76b2c9412137ed8541be
2023-12-15T21:02:17,644   Stored in directory: /tmp/pip-ephem-wheel-cache-y4q3foq4/wheels/ee/7e/4d/f65ae0bcfdc0f6871b5b9a018b34c4038eaa54c7c3d1ae5f97
2023-12-15T21:02:17,667 Successfully built snipgenie
2023-12-15T21:02:18,441 Removed build tracker: '/tmp/pip-build-tracker-dd6huj23'