2023-12-18T18:46:26,500 Created temporary directory: /tmp/pip-build-tracker-5t6rrpql 2023-12-18T18:46:26,501 Initialized build tracking at /tmp/pip-build-tracker-5t6rrpql 2023-12-18T18:46:26,502 Created build tracker: /tmp/pip-build-tracker-5t6rrpql 2023-12-18T18:46:26,502 Entered build tracker: /tmp/pip-build-tracker-5t6rrpql 2023-12-18T18:46:26,503 Created temporary directory: /tmp/pip-wheel-odekw_7o 2023-12-18T18:46:26,506 Created temporary directory: /tmp/pip-ephem-wheel-cache-kovmiakt 2023-12-18T18:46:26,529 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-18T18:46:26,532 2 location(s) to search for versions of pyrosetta-help: 2023-12-18T18:46:26,532 * https://pypi.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,532 * https://www.piwheels.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,533 Fetching project page and analyzing links: https://pypi.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,534 Getting page https://pypi.org/simple/pyrosetta-help/ 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2023-12-18T18:46:26,775 Found link https://files.pythonhosted.org/packages/01/d4/1a8184098edb50a9c84b6beeb50c6ef97de81d61ca7b5d83a730912fb46c/pyrosetta_help-0.4.1.tar.gz (from https://pypi.org/simple/pyrosetta-help/) (requires-python:>=3.7), version: 0.4.1 2023-12-18T18:46:26,776 Found link https://files.pythonhosted.org/packages/4f/dc/30de58cbd7108b1195f197e15c8f18877be724b440f179bddeee9bf79264/pyrosetta_help-0.4.2.tar.gz (from https://pypi.org/simple/pyrosetta-help/) (requires-python:>=3.7), version: 0.4.2 2023-12-18T18:46:26,777 Found link https://files.pythonhosted.org/packages/ee/e6/d587080fb19cc488eef38f6ef949cd0944cdb08b655064c1a9918c9d3d91/pyrosetta_help-0.4.3.tar.gz (from https://pypi.org/simple/pyrosetta-help/) (requires-python:>=3.7), version: 0.4.3 2023-12-18T18:46:26,777 Found link https://files.pythonhosted.org/packages/1b/28/f28994bcb23644cb6d0ff6b9873dc265823c18481ef30a3048dd02a7d56d/pyrosetta_help-0.4.4.tar.gz (from https://pypi.org/simple/pyrosetta-help/) 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2023-12-18T18:46:26,792 Found link https://files.pythonhosted.org/packages/7a/8b/b14f0cd9233f3bdbbbdd473e44f89f60a0f3ce1ad113c692d179f78dd33f/pyrosetta_help-0.5.7.tar.gz (from https://pypi.org/simple/pyrosetta-help/) (requires-python:>=3.7), version: 0.5.7 2023-12-18T18:46:26,793 Found link https://files.pythonhosted.org/packages/ee/05/cfb3114bff2e9dee7708e11dbc2a579ad60fa2ad159939f877e65cab06ff/pyrosetta_help-0.5.8.tar.gz (from https://pypi.org/simple/pyrosetta-help/) (requires-python:>=3.7), version: 0.5.8 2023-12-18T18:46:26,794 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,795 Getting page https://www.piwheels.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,796 Found index url https://www.piwheels.org/simple/ 2023-12-18T18:46:26,957 Fetched page https://www.piwheels.org/simple/pyrosetta-help/ as text/html 2023-12-18T18:46:26,965 Skipping link: No binaries permitted for pyrosetta-help: 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https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3.6-py3-none-any.whl#sha256=bad8c6670da1c73aee56a89549ab4cdd4de15208f9be02c02654d8549cd866ea (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,976 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3.5-py3-none-any.whl#sha256=2820b032b22e7362247d5c869a26238941ccb3a1d6ba92d64658055957b42c6d (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,976 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3.4-py3-none-any.whl#sha256=6518626c846daee589addbdff4ce2059955f6429fe4b2cd73f6a3147a3dcce10 (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,977 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3.3-py3-none-any.whl#sha256=23b14d516d62000b11051278f24da008f244fdcd9a5e9aee9702278a4a23c717 (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,977 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3.1-py3-none-any.whl#sha256=e17f4527e27b25d3d943481d39794662abec82c0238c57bb4c3f1f41c3ac815f (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,977 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.3-py3-none-any.whl#sha256=dcbe9285e6d726c2d383b2052c6507163414cea2cef247282fa212553421564c (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,978 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.2-py3-none-any.whl#sha256=928a69ae0dbf80aca5539589f79077e35d76b2e3bbb83e2d81a57c98396ea3da (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,978 Skipping link: No binaries permitted for pyrosetta-help: https://www.piwheels.org/simple/pyrosetta-help/pyrosetta_help-0.1-py3-none-any.whl#sha256=4069188b1518712dd02350e47c746292685b263c74c9c502049d4ebf8215c438 (from https://www.piwheels.org/simple/pyrosetta-help/) 2023-12-18T18:46:26,979 Skipping link: not a file: https://www.piwheels.org/simple/pyrosetta-help/ 2023-12-18T18:46:26,980 Skipping link: not a file: https://pypi.org/simple/pyrosetta-help/ 2023-12-18T18:46:27,002 Given no hashes to check 1 links for project 'pyrosetta-help': discarding no candidates 2023-12-18T18:46:27,020 Collecting pyrosetta-help==0.5.8 2023-12-18T18:46:27,022 Created temporary directory: /tmp/pip-unpack-8pgbva6p 2023-12-18T18:46:27,236 Downloading pyrosetta_help-0.5.8.tar.gz (70 kB) 2023-12-18T18:46:27,426 Added pyrosetta-help==0.5.8 from https://files.pythonhosted.org/packages/ee/05/cfb3114bff2e9dee7708e11dbc2a579ad60fa2ad159939f877e65cab06ff/pyrosetta_help-0.5.8.tar.gz to build tracker '/tmp/pip-build-tracker-5t6rrpql' 2023-12-18T18:46:27,428 Running setup.py (path:/tmp/pip-wheel-odekw_7o/pyrosetta-help_1bc260a18b0e4be281a5543b420ddfb8/setup.py) egg_info for package pyrosetta-help 2023-12-18T18:46:27,429 Created temporary directory: /tmp/pip-pip-egg-info-hn27dgqw 2023-12-18T18:46:27,429 Preparing metadata (setup.py): started 2023-12-18T18:46:27,431 Running command python setup.py egg_info 2023-12-18T18:46:28,465 running egg_info 2023-12-18T18:46:28,466 creating /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info 2023-12-18T18:46:28,491 writing /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/PKG-INFO 2023-12-18T18:46:28,495 writing dependency_links to /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/dependency_links.txt 2023-12-18T18:46:28,496 writing entry points to /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/entry_points.txt 2023-12-18T18:46:28,498 writing requirements to /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/requires.txt 2023-12-18T18:46:28,499 writing top-level names to /tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/top_level.txt 2023-12-18T18:46:28,500 writing manifest file '/tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/SOURCES.txt' 2023-12-18T18:46:28,590 reading manifest file '/tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/SOURCES.txt' 2023-12-18T18:46:28,591 reading manifest template 'MANIFEST.in' 2023-12-18T18:46:28,593 warning: no files found matching 'LICENCE' 2023-12-18T18:46:28,593 adding license file 'LICENSE' 2023-12-18T18:46:28,596 writing manifest file '/tmp/pip-pip-egg-info-hn27dgqw/pyrosetta_help.egg-info/SOURCES.txt' 2023-12-18T18:46:28,702 Preparing metadata (setup.py): finished with status 'done' 2023-12-18T18:46:28,707 Source in /tmp/pip-wheel-odekw_7o/pyrosetta-help_1bc260a18b0e4be281a5543b420ddfb8 has version 0.5.8, which satisfies requirement pyrosetta-help==0.5.8 from https://files.pythonhosted.org/packages/ee/05/cfb3114bff2e9dee7708e11dbc2a579ad60fa2ad159939f877e65cab06ff/pyrosetta_help-0.5.8.tar.gz 2023-12-18T18:46:28,708 Removed pyrosetta-help==0.5.8 from https://files.pythonhosted.org/packages/ee/05/cfb3114bff2e9dee7708e11dbc2a579ad60fa2ad159939f877e65cab06ff/pyrosetta_help-0.5.8.tar.gz from build tracker '/tmp/pip-build-tracker-5t6rrpql' 2023-12-18T18:46:28,716 Created temporary directory: /tmp/pip-unpack-6anevcz6 2023-12-18T18:46:28,717 Created temporary directory: /tmp/pip-unpack-uepj9wb3 2023-12-18T18:46:28,728 Building wheels for collected packages: pyrosetta-help 2023-12-18T18:46:28,732 Created temporary directory: /tmp/pip-wheel-az1q90qv 2023-12-18T18:46:28,733 Building wheel for pyrosetta-help (setup.py): started 2023-12-18T18:46:28,734 Destination directory: /tmp/pip-wheel-az1q90qv 2023-12-18T18:46:28,735 Running command python setup.py bdist_wheel 2023-12-18T18:46:29,730 running bdist_wheel 2023-12-18T18:46:29,824 running build 2023-12-18T18:46:29,825 running build_py 2023-12-18T18:46:29,851 creating build 2023-12-18T18:46:29,852 creating build/lib 2023-12-18T18:46:29,853 creating build/lib/pyrosetta_help 2023-12-18T18:46:29,854 copying pyrosetta_help/colab_ops.py -> build/lib/pyrosetta_help 2023-12-18T18:46:29,856 copying pyrosetta_help/__init__.py -> build/lib/pyrosetta_help 2023-12-18T18:46:29,858 copying pyrosetta_help/database.py -> build/lib/pyrosetta_help 2023-12-18T18:46:29,860 creating build/lib/pyrosetta_help/chain_ops 2023-12-18T18:46:29,861 copying pyrosetta_help/chain_ops/transmogrifier.py -> build/lib/pyrosetta_help/chain_ops 2023-12-18T18:46:29,863 copying pyrosetta_help/chain_ops/chain_ops.py -> build/lib/pyrosetta_help/chain_ops 2023-12-18T18:46:29,865 copying pyrosetta_help/chain_ops/__init__.py -> build/lib/pyrosetta_help/chain_ops 2023-12-18T18:46:29,867 creating build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,868 copying pyrosetta_help/alphafold/retrieval.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,870 copying pyrosetta_help/alphafold/constraints.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,872 copying pyrosetta_help/alphafold/multimodel.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,875 copying pyrosetta_help/alphafold/plot.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,876 copying pyrosetta_help/alphafold/superimpose.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,878 copying pyrosetta_help/alphafold/__init__.py -> build/lib/pyrosetta_help/alphafold 2023-12-18T18:46:29,880 creating build/lib/pyrosetta_help/ligands 2023-12-18T18:46:29,881 copying pyrosetta_help/ligands/hunter.py -> build/lib/pyrosetta_help/ligands 2023-12-18T18:46:29,883 copying pyrosetta_help/ligands/load.py -> build/lib/pyrosetta_help/ligands 2023-12-18T18:46:29,885 copying pyrosetta_help/ligands/__init__.py -> build/lib/pyrosetta_help/ligands 2023-12-18T18:46:29,886 copying pyrosetta_help/ligands/nick.py -> build/lib/pyrosetta_help/ligands 2023-12-18T18:46:29,889 creating build/lib/pyrosetta_help/weights 2023-12-18T18:46:29,890 copying pyrosetta_help/weights/__init__.py -> build/lib/pyrosetta_help/weights 2023-12-18T18:46:29,892 copying pyrosetta_help/weights/terms.py -> build/lib/pyrosetta_help/weights 2023-12-18T18:46:29,894 creating build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,895 copying pyrosetta_help/blueprint_maker/_expected.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,897 copying pyrosetta_help/blueprint_maker/_common.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,899 copying pyrosetta_help/blueprint_maker/_subscripted.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,901 copying pyrosetta_help/blueprint_maker/_remodel.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,903 copying pyrosetta_help/blueprint_maker/_pdb_info.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,904 copying pyrosetta_help/blueprint_maker/__init__.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,906 copying pyrosetta_help/blueprint_maker/_init.py -> build/lib/pyrosetta_help/blueprint_maker 2023-12-18T18:46:29,908 creating build/lib/pyrosetta_help/threading 2023-12-18T18:46:29,909 copying pyrosetta_help/threading/__init__.py -> build/lib/pyrosetta_help/threading 2023-12-18T18:46:29,912 creating build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,913 copying pyrosetta_help/common_ops/faux_selectors.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,915 copying pyrosetta_help/common_ops/nglview.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,917 copying pyrosetta_help/common_ops/constraints.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,919 copying pyrosetta_help/common_ops/ss_changes.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,920 copying pyrosetta_help/common_ops/downloads.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,922 copying pyrosetta_help/common_ops/distances.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,924 copying pyrosetta_help/common_ops/minimize.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,925 copying pyrosetta_help/common_ops/utils.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,927 copying pyrosetta_help/common_ops/__init__.py -> build/lib/pyrosetta_help/common_ops 2023-12-18T18:46:29,930 creating build/lib/pyrosetta_help/init_ops 2023-12-18T18:46:29,930 copying pyrosetta_help/init_ops/log.py -> build/lib/pyrosetta_help/init_ops 2023-12-18T18:46:29,932 copying pyrosetta_help/init_ops/make_options.py -> build/lib/pyrosetta_help/init_ops 2023-12-18T18:46:29,934 copying pyrosetta_help/init_ops/__init__.py -> build/lib/pyrosetta_help/init_ops 2023-12-18T18:46:29,936 creating build/lib/pyrosetta_help/score_mutants 2023-12-18T18:46:29,937 copying pyrosetta_help/score_mutants/variant.py -> build/lib/pyrosetta_help/score_mutants 2023-12-18T18:46:29,940 copying pyrosetta_help/score_mutants/scores.py -> build/lib/pyrosetta_help/score_mutants 2023-12-18T18:46:29,941 copying pyrosetta_help/score_mutants/mutation.py -> build/lib/pyrosetta_help/score_mutants 2023-12-18T18:46:29,943 copying pyrosetta_help/score_mutants/__init__.py -> build/lib/pyrosetta_help/score_mutants 2023-12-18T18:46:29,945 creating build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,946 copying pyrosetta_help/residue_decription/hbonds.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,948 copying pyrosetta_help/residue_decription/xlinks.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,950 copying pyrosetta_help/residue_decription/betaturn.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,951 copying pyrosetta_help/residue_decription/ss.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,953 copying pyrosetta_help/residue_decription/__init__.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,954 copying pyrosetta_help/residue_decription/cis.py -> build/lib/pyrosetta_help/residue_decription 2023-12-18T18:46:29,956 creating build/lib/pyrosetta_help/installer 2023-12-18T18:46:29,957 copying pyrosetta_help/installer/_aux.py -> build/lib/pyrosetta_help/installer 2023-12-18T18:46:29,959 copying pyrosetta_help/installer/__init__.py -> build/lib/pyrosetta_help/installer 2023-12-18T18:46:29,962 creating build/lib/pyrosetta_help/per_atom 2023-12-18T18:46:29,962 copying pyrosetta_help/per_atom/__init__.py -> build/lib/pyrosetta_help/per_atom 2023-12-18T18:46:29,998 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-18T18:46:29,998 !! 2023-12-18T18:46:29,999 ******************************************************************************** 2023-12-18T18:46:30,000 Please avoid running ``setup.py`` directly. 2023-12-18T18:46:30,000 Instead, use pypa/build, pypa/installer or other 2023-12-18T18:46:30,001 standards-based tools. 2023-12-18T18:46:30,002 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-18T18:46:30,002 ******************************************************************************** 2023-12-18T18:46:30,003 !! 2023-12-18T18:46:30,004 self.initialize_options() 2023-12-18T18:46:30,024 installing to build/bdist.linux-armv7l/wheel 2023-12-18T18:46:30,025 running install 2023-12-18T18:46:30,049 running install_lib 2023-12-18T18:46:30,074 creating build/bdist.linux-armv7l 2023-12-18T18:46:30,075 creating build/bdist.linux-armv7l/wheel 2023-12-18T18:46:30,077 creating build/bdist.linux-armv7l/wheel/pyrosetta_help 2023-12-18T18:46:30,079 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/chain_ops 2023-12-18T18:46:30,080 copying build/lib/pyrosetta_help/chain_ops/transmogrifier.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/chain_ops 2023-12-18T18:46:30,083 copying build/lib/pyrosetta_help/chain_ops/chain_ops.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/chain_ops 2023-12-18T18:46:30,085 copying build/lib/pyrosetta_help/chain_ops/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/chain_ops 2023-12-18T18:46:30,087 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,088 copying build/lib/pyrosetta_help/alphafold/retrieval.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,090 copying build/lib/pyrosetta_help/alphafold/constraints.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,093 copying build/lib/pyrosetta_help/alphafold/multimodel.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,096 copying build/lib/pyrosetta_help/alphafold/plot.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,098 copying build/lib/pyrosetta_help/alphafold/superimpose.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,100 copying build/lib/pyrosetta_help/alphafold/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/alphafold 2023-12-18T18:46:30,102 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/ligands 2023-12-18T18:46:30,103 copying build/lib/pyrosetta_help/ligands/hunter.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/ligands 2023-12-18T18:46:30,106 copying build/lib/pyrosetta_help/ligands/load.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/ligands 2023-12-18T18:46:30,108 copying build/lib/pyrosetta_help/ligands/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/ligands 2023-12-18T18:46:30,110 copying build/lib/pyrosetta_help/ligands/nick.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/ligands 2023-12-18T18:46:30,114 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/weights 2023-12-18T18:46:30,115 copying build/lib/pyrosetta_help/weights/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/weights 2023-12-18T18:46:30,117 copying build/lib/pyrosetta_help/weights/terms.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/weights 2023-12-18T18:46:30,120 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,121 copying build/lib/pyrosetta_help/blueprint_maker/_expected.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,124 copying build/lib/pyrosetta_help/blueprint_maker/_common.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,126 copying build/lib/pyrosetta_help/blueprint_maker/_subscripted.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,129 copying build/lib/pyrosetta_help/blueprint_maker/_remodel.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,131 copying build/lib/pyrosetta_help/blueprint_maker/_pdb_info.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,132 copying build/lib/pyrosetta_help/blueprint_maker/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,134 copying build/lib/pyrosetta_help/blueprint_maker/_init.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/blueprint_maker 2023-12-18T18:46:30,136 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/threading 2023-12-18T18:46:30,137 copying build/lib/pyrosetta_help/threading/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/threading 2023-12-18T18:46:30,140 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,141 copying build/lib/pyrosetta_help/common_ops/faux_selectors.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,143 copying build/lib/pyrosetta_help/common_ops/nglview.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,145 copying build/lib/pyrosetta_help/common_ops/constraints.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,147 copying build/lib/pyrosetta_help/common_ops/ss_changes.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,149 copying build/lib/pyrosetta_help/common_ops/downloads.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,151 copying build/lib/pyrosetta_help/common_ops/distances.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,153 copying build/lib/pyrosetta_help/common_ops/minimize.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,155 copying build/lib/pyrosetta_help/common_ops/utils.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,157 copying build/lib/pyrosetta_help/common_ops/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/common_ops 2023-12-18T18:46:30,159 copying build/lib/pyrosetta_help/colab_ops.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help 2023-12-18T18:46:30,161 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/init_ops 2023-12-18T18:46:30,162 copying build/lib/pyrosetta_help/init_ops/log.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/init_ops 2023-12-18T18:46:30,164 copying build/lib/pyrosetta_help/init_ops/make_options.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/init_ops 2023-12-18T18:46:30,166 copying build/lib/pyrosetta_help/init_ops/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/init_ops 2023-12-18T18:46:30,168 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/score_mutants 2023-12-18T18:46:30,169 copying build/lib/pyrosetta_help/score_mutants/variant.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/score_mutants 2023-12-18T18:46:30,171 copying build/lib/pyrosetta_help/score_mutants/scores.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/score_mutants 2023-12-18T18:46:30,173 copying build/lib/pyrosetta_help/score_mutants/mutation.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/score_mutants 2023-12-18T18:46:30,175 copying build/lib/pyrosetta_help/score_mutants/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/score_mutants 2023-12-18T18:46:30,177 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,178 copying build/lib/pyrosetta_help/residue_decription/hbonds.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,180 copying build/lib/pyrosetta_help/residue_decription/xlinks.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,181 copying build/lib/pyrosetta_help/residue_decription/betaturn.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,183 copying build/lib/pyrosetta_help/residue_decription/ss.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,185 copying build/lib/pyrosetta_help/residue_decription/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,186 copying build/lib/pyrosetta_help/residue_decription/cis.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/residue_decription 2023-12-18T18:46:30,188 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/installer 2023-12-18T18:46:30,189 copying build/lib/pyrosetta_help/installer/_aux.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/installer 2023-12-18T18:46:30,191 copying build/lib/pyrosetta_help/installer/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/installer 2023-12-18T18:46:30,194 creating build/bdist.linux-armv7l/wheel/pyrosetta_help/per_atom 2023-12-18T18:46:30,194 copying build/lib/pyrosetta_help/per_atom/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help/per_atom 2023-12-18T18:46:30,197 copying build/lib/pyrosetta_help/__init__.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help 2023-12-18T18:46:30,198 copying build/lib/pyrosetta_help/database.py -> build/bdist.linux-armv7l/wheel/pyrosetta_help 2023-12-18T18:46:30,200 running install_egg_info 2023-12-18T18:46:30,260 running egg_info 2023-12-18T18:46:30,283 writing pyrosetta_help.egg-info/PKG-INFO 2023-12-18T18:46:30,286 writing dependency_links to pyrosetta_help.egg-info/dependency_links.txt 2023-12-18T18:46:30,288 writing entry points to pyrosetta_help.egg-info/entry_points.txt 2023-12-18T18:46:30,289 writing requirements to pyrosetta_help.egg-info/requires.txt 2023-12-18T18:46:30,290 writing top-level names to pyrosetta_help.egg-info/top_level.txt 2023-12-18T18:46:30,325 reading manifest file 'pyrosetta_help.egg-info/SOURCES.txt' 2023-12-18T18:46:30,328 reading manifest template 'MANIFEST.in' 2023-12-18T18:46:30,329 warning: no files found matching 'LICENCE' 2023-12-18T18:46:30,329 adding license file 'LICENSE' 2023-12-18T18:46:30,333 writing manifest file 'pyrosetta_help.egg-info/SOURCES.txt' 2023-12-18T18:46:30,334 Copying pyrosetta_help.egg-info to build/bdist.linux-armv7l/wheel/pyrosetta_help-0.5.8-py3.11.egg-info 2023-12-18T18:46:30,345 running install_scripts 2023-12-18T18:46:30,363 creating build/bdist.linux-armv7l/wheel/pyrosetta_help-0.5.8.dist-info/WHEEL 2023-12-18T18:46:30,365 creating '/tmp/pip-wheel-az1q90qv/pyrosetta_help-0.5.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-18T18:46:30,367 adding 'pyrosetta_help/__init__.py' 2023-12-18T18:46:30,369 adding 'pyrosetta_help/colab_ops.py' 2023-12-18T18:46:30,370 adding 'pyrosetta_help/database.py' 2023-12-18T18:46:30,372 adding 'pyrosetta_help/alphafold/__init__.py' 2023-12-18T18:46:30,374 adding 'pyrosetta_help/alphafold/constraints.py' 2023-12-18T18:46:30,377 adding 'pyrosetta_help/alphafold/multimodel.py' 2023-12-18T18:46:30,378 adding 'pyrosetta_help/alphafold/plot.py' 2023-12-18T18:46:30,379 adding 'pyrosetta_help/alphafold/retrieval.py' 2023-12-18T18:46:30,381 adding 'pyrosetta_help/alphafold/superimpose.py' 2023-12-18T18:46:30,383 adding 'pyrosetta_help/blueprint_maker/__init__.py' 2023-12-18T18:46:30,384 adding 'pyrosetta_help/blueprint_maker/_common.py' 2023-12-18T18:46:30,386 adding 'pyrosetta_help/blueprint_maker/_expected.py' 2023-12-18T18:46:30,387 adding 'pyrosetta_help/blueprint_maker/_init.py' 2023-12-18T18:46:30,388 adding 'pyrosetta_help/blueprint_maker/_pdb_info.py' 2023-12-18T18:46:30,389 adding 'pyrosetta_help/blueprint_maker/_remodel.py' 2023-12-18T18:46:30,391 adding 'pyrosetta_help/blueprint_maker/_subscripted.py' 2023-12-18T18:46:30,392 adding 'pyrosetta_help/chain_ops/__init__.py' 2023-12-18T18:46:30,394 adding 'pyrosetta_help/chain_ops/chain_ops.py' 2023-12-18T18:46:30,395 adding 'pyrosetta_help/chain_ops/transmogrifier.py' 2023-12-18T18:46:30,397 adding 'pyrosetta_help/common_ops/__init__.py' 2023-12-18T18:46:30,398 adding 'pyrosetta_help/common_ops/constraints.py' 2023-12-18T18:46:30,400 adding 'pyrosetta_help/common_ops/distances.py' 2023-12-18T18:46:30,401 adding 'pyrosetta_help/common_ops/downloads.py' 2023-12-18T18:46:30,402 adding 'pyrosetta_help/common_ops/faux_selectors.py' 2023-12-18T18:46:30,404 adding 'pyrosetta_help/common_ops/minimize.py' 2023-12-18T18:46:30,405 adding 'pyrosetta_help/common_ops/nglview.py' 2023-12-18T18:46:30,407 adding 'pyrosetta_help/common_ops/ss_changes.py' 2023-12-18T18:46:30,409 adding 'pyrosetta_help/common_ops/utils.py' 2023-12-18T18:46:30,410 adding 'pyrosetta_help/init_ops/__init__.py' 2023-12-18T18:46:30,411 adding 'pyrosetta_help/init_ops/log.py' 2023-12-18T18:46:30,413 adding 'pyrosetta_help/init_ops/make_options.py' 2023-12-18T18:46:30,415 adding 'pyrosetta_help/installer/__init__.py' 2023-12-18T18:46:30,416 adding 'pyrosetta_help/installer/_aux.py' 2023-12-18T18:46:30,418 adding 'pyrosetta_help/ligands/__init__.py' 2023-12-18T18:46:30,420 adding 'pyrosetta_help/ligands/hunter.py' 2023-12-18T18:46:30,421 adding 'pyrosetta_help/ligands/load.py' 2023-12-18T18:46:30,424 adding 'pyrosetta_help/ligands/nick.py' 2023-12-18T18:46:30,426 adding 'pyrosetta_help/per_atom/__init__.py' 2023-12-18T18:46:30,428 adding 'pyrosetta_help/residue_decription/__init__.py' 2023-12-18T18:46:30,429 adding 'pyrosetta_help/residue_decription/betaturn.py' 2023-12-18T18:46:30,430 adding 'pyrosetta_help/residue_decription/cis.py' 2023-12-18T18:46:30,432 adding 'pyrosetta_help/residue_decription/hbonds.py' 2023-12-18T18:46:30,433 adding 'pyrosetta_help/residue_decription/ss.py' 2023-12-18T18:46:30,435 adding 'pyrosetta_help/residue_decription/xlinks.py' 2023-12-18T18:46:30,436 adding 'pyrosetta_help/score_mutants/__init__.py' 2023-12-18T18:46:30,438 adding 'pyrosetta_help/score_mutants/mutation.py' 2023-12-18T18:46:30,439 adding 'pyrosetta_help/score_mutants/scores.py' 2023-12-18T18:46:30,442 adding 'pyrosetta_help/score_mutants/variant.py' 2023-12-18T18:46:30,444 adding 'pyrosetta_help/threading/__init__.py' 2023-12-18T18:46:30,446 adding 'pyrosetta_help/weights/__init__.py' 2023-12-18T18:46:30,448 adding 'pyrosetta_help/weights/terms.py' 2023-12-18T18:46:30,450 adding 'pyrosetta_help-0.5.8.dist-info/LICENSE' 2023-12-18T18:46:30,452 adding 'pyrosetta_help-0.5.8.dist-info/METADATA' 2023-12-18T18:46:30,453 adding 'pyrosetta_help-0.5.8.dist-info/WHEEL' 2023-12-18T18:46:30,454 adding 'pyrosetta_help-0.5.8.dist-info/entry_points.txt' 2023-12-18T18:46:30,455 adding 'pyrosetta_help-0.5.8.dist-info/top_level.txt' 2023-12-18T18:46:30,456 adding 'pyrosetta_help-0.5.8.dist-info/RECORD' 2023-12-18T18:46:30,459 removing build/bdist.linux-armv7l/wheel 2023-12-18T18:46:30,585 Building wheel for pyrosetta-help (setup.py): finished with status 'done' 2023-12-18T18:46:30,589 Created wheel for pyrosetta-help: filename=pyrosetta_help-0.5.8-py3-none-any.whl size=80773 sha256=cc874c2e71f59e18011021ab83cfee2707125cf79787847975d34edd77ce4d30 2023-12-18T18:46:30,590 Stored in directory: /tmp/pip-ephem-wheel-cache-kovmiakt/wheels/06/3f/91/c244a62b460167ffb5e1a39d45dfca49e32aa11f0aa1eddeaf 2023-12-18T18:46:30,604 Successfully built pyrosetta-help 2023-12-18T18:46:30,609 Removed build tracker: '/tmp/pip-build-tracker-5t6rrpql'