2023-12-18T22:06:04,697 Created temporary directory: /tmp/pip-build-tracker-6gi62c0e 2023-12-18T22:06:04,698 Initialized build tracking at /tmp/pip-build-tracker-6gi62c0e 2023-12-18T22:06:04,698 Created build tracker: /tmp/pip-build-tracker-6gi62c0e 2023-12-18T22:06:04,699 Entered build tracker: /tmp/pip-build-tracker-6gi62c0e 2023-12-18T22:06:04,700 Created temporary directory: /tmp/pip-wheel-9hbyfpof 2023-12-18T22:06:04,703 Created temporary directory: /tmp/pip-ephem-wheel-cache-yznbx_x2 2023-12-18T22:06:04,725 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-18T22:06:04,729 2 location(s) to search for versions of nmdc-runtime: 2023-12-18T22:06:04,729 * https://pypi.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,729 * https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,730 Fetching project page and analyzing links: https://pypi.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,731 Getting page https://pypi.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,732 Found index url https://pypi.org/simple/ 2023-12-18T22:06:04,962 Fetched page https://pypi.org/simple/nmdc-runtime/ as application/vnd.pypi.simple.v1+json 2023-12-18T22:06:04,969 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/44/acaca01a3fdf26351a427b58ca793a2702c1157d5125d3101029e99d0ab0/nmdc_runtime-0.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:04,970 Found link https://files.pythonhosted.org/packages/3d/56/9ddca8b74ed798352aca6ba02e98c7bfbf232ccb237660b2488f7da8a39e/nmdc_runtime-0.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.0 2023-12-18T22:06:04,971 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/38/59/cb99a0e180d0de57a68cdd118ed305b68d97561a7a82da80d48992236382/nmdc_runtime-0.1.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:04,971 Found link https://files.pythonhosted.org/packages/31/0d/353b462ef1bde0cdb4f4d36b943b19f4844070641e2ad25cf4b39e10154d/nmdc_runtime-0.1.1.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.1 2023-12-18T22:06:04,972 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/c9/32/65aa3b8e7dae9e5c896fa1fcaf559fb1784d824759c78b4c89682c681275/nmdc_runtime-0.1.3-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:04,973 Found link https://files.pythonhosted.org/packages/f5/f9/e540bd39ae5b2f834f09138219ba5c9beab7797821f063b93e2f0cb48c30/nmdc_runtime-0.1.3.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.3 2023-12-18T22:06:04,974 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/f4/3b90e1ea7442d196974acf301cef0e2b867f811bb288b9d39cf9c75c9af0/nmdc_runtime-0.1.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:04,974 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/44/e7/dbd9b95d667293a0c7623f51f920d3e4eec16fc97c449668591ac2e404c0/nmdc_runtime-0.1.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:04,975 Found link https://files.pythonhosted.org/packages/82/26/5ed0f7ec2108a87e7f3689f6d8daa6ff3aca90fdb10ede7b65f8c6b46fa3/nmdc_runtime-0.1.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.8), version: 0.1.6 2023-12-18T22:06:04,976 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/25/e1/ace3cd495b80bf86380dd90c4aaa0c198e9575630b46565b41301684cd71/nmdc_runtime-1.0.1-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,977 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/91/13/7b4668fac66e4189055f043538ff82b1941bf1c26ec3a0c6b43881f94282/nmdc_runtime-1.0.4-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,977 Found link https://files.pythonhosted.org/packages/9e/90/ec35cff97b890d3460295c3429d5c8422d82a38d959dcb69dce2ce8837c0/nmdc_runtime-1.0.4.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.4 2023-12-18T22:06:04,978 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ef/0b/514c8e6402048965952aa4388d7c02325fdaa593b0e47c16bf2f764a0352/nmdc_runtime-1.0.5-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,979 Found link https://files.pythonhosted.org/packages/a6/d4/a045432ad1e5aa78fe551f709acefb99c2daa2900a79764b6e4b24a3ff84/nmdc_runtime-1.0.5.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.5 2023-12-18T22:06:04,980 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/ba/50/3d96523a550ade0100a5119d6db39d4d50c53c0ce641d1122b28065ddd59/nmdc_runtime-1.0.6-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,981 Found link https://files.pythonhosted.org/packages/1b/14/332338c0e11e12cfc9cef95954d336975121bf9bf6bc5c9208dca1b078da/nmdc_runtime-1.0.6.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.6 2023-12-18T22:06:04,981 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/83/aa/294ca7f53b217ca8dd0788b77d08fb5c3688780e44bc3d111c06540ef05f/nmdc_runtime-1.0.7-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,982 Found link https://files.pythonhosted.org/packages/b5/d2/a8d599d0fd9c6a8e0e50d4e564acb5e8e3e956832e410c76a46d76f86ccb/nmdc_runtime-1.0.7.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.7 2023-12-18T22:06:04,983 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/de/d5/c7c62f5f39ec86d5ac6a716db4ca2e462bd295c9c0cd4bad4b3e01ccab17/nmdc_runtime-1.0.8-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,984 Found link https://files.pythonhosted.org/packages/d5/81/4f13b4623de2904fc48c01a4d2e58a09f274a65db23ee0038a0ff56bb08a/nmdc_runtime-1.0.8.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.8 2023-12-18T22:06:04,984 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/e5/37/b7e7eb1a426c76c4ab05590350bfce3e258bffe2ca8a069fa253bde96df9/nmdc_runtime-1.0.9-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,985 Found link https://files.pythonhosted.org/packages/b0/01/0d438371437d3059ca4a608b7b594c41dc79fcd58922d26379101a6345ef/nmdc_runtime-1.0.9.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.9 2023-12-18T22:06:04,986 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/65/d3/d255f6adef1b2dae59f12cd337641efee9474897716115fc5e11c95d4fe1/nmdc_runtime-1.0.10-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,987 Found link https://files.pythonhosted.org/packages/b1/f4/82f9056ec7de3de14ef373f21c9439963f373697be818989ec08d2329f34/nmdc_runtime-1.0.10.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.10 2023-12-18T22:06:04,987 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/53/77/c73fdac212bf196c2e3dfbf8347d160b427dff8f11e069c1a5972ce90c43/nmdc_runtime-1.0.11-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,988 Found link https://files.pythonhosted.org/packages/67/81/5b6010837872165ff671121bfff01d29e103997d7b394eae5453f4bdd1b9/nmdc_runtime-1.0.11.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.11 2023-12-18T22:06:04,989 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/13/bd/6dd46143615928b35bc35b6f246fff3cb4c55d35a8555d47f7cd7565a605/nmdc_runtime-1.0.12-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,990 Found link https://files.pythonhosted.org/packages/73/08/56746d739798869d3ed33ac1e8685a044effc638e5f60e0989334e3df803/nmdc_runtime-1.0.12.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.12 2023-12-18T22:06:04,991 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/7c/80/a8c1f0d64d6a38faa36be239477f893488fa2e80bbd9d3699996544fd35a/nmdc_runtime-1.0.13-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,991 Found link https://files.pythonhosted.org/packages/dd/eb/a7a49613cffd4d9835cacbb61b9b8b682346b7f7257b025e6faa922f3106/nmdc_runtime-1.0.13.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.13 2023-12-18T22:06:04,992 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/17/8d/0c38aaa9d5581eda908809321eb9218b90b859c2087483513edfe30e0ae9/nmdc_runtime-1.0.14-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,993 Found link https://files.pythonhosted.org/packages/aa/6b/6e5ecdb95c3060c389779c16813ebbd437c61519d0c923bec953b80f8b6e/nmdc_runtime-1.0.14.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.0.14 2023-12-18T22:06:04,993 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/24/60/40b5389c4d34db0aefc25a4f407a1965d297a51ce443ffcc54fcf5f0a30f/nmdc_runtime-1.1.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,994 Found link https://files.pythonhosted.org/packages/f1/af/d3edeb153597d1918967ef00cf6be6621c21043ba1549fa0f37273a01a7d/nmdc_runtime-1.1.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.1.0 2023-12-18T22:06:04,995 Skipping link: No binaries permitted for nmdc-runtime: https://files.pythonhosted.org/packages/2d/7b/c1998db0a46f571bbc7e208e7b3a55afb254a6d1413a5fbd500368128aa9/nmdc_runtime-1.2.0-py3-none-any.whl (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:04,996 Found link https://files.pythonhosted.org/packages/67/bc/bd9a296ea7257aaa0c72a1f9be3a197f6e2d71c337574e3d16198cd6242e/nmdc_runtime-1.2.0.tar.gz (from https://pypi.org/simple/nmdc-runtime/) (requires-python:>=3.10), version: 1.2.0 2023-12-18T22:06:04,997 Fetching project page and analyzing links: https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,997 Getting page https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-18T22:06:04,999 Found index url https://www.piwheels.org/simple/ 2023-12-18T22:06:05,168 Fetched page https://www.piwheels.org/simple/nmdc-runtime/ as text/html 2023-12-18T22:06:05,174 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.1.0-py3-none-any.whl#sha256=d53b1a410a95e2e14bfd7a88dd3ea3163a079acd47eb8f2b197e6aef02689ac3 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,174 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.14-py3-none-any.whl#sha256=7ea5bd4e9b9348aee578b0f6c64bdc35467a36da334a44d91c50fa1417405f13 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,175 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.13-py3-none-any.whl#sha256=31d876ee80407dc4049b210ed8c017b77723f7ad78bf89ea9ef8b07f1ea8682a (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,175 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.12-py3-none-any.whl#sha256=87d81eb829ad73563e0fa371336f03d59417e00c9dcc12d943738fa67c0287fc (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,176 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.11-py3-none-any.whl#sha256=b48456c6ad565bcca33642f19ca745d5e57105419ae1dc96efb9f51b349e7fbd (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,177 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.10-py3-none-any.whl#sha256=9575befdcc66f9de5c0c08719aa4e5986f3b8d6ec2ad11a8a8f0595ceb4b17bf (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,177 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.9-py3-none-any.whl#sha256=22b2fbd19c0c6b4fb04444a368d8051e3dfd8d8198d378f00d29177d8b6daf8e (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,178 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.8-py3-none-any.whl#sha256=b2b81313cc150e7186a150993c0df3fddcce6c61142bce79e1e6a73f689c8caa (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,178 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.7-py3-none-any.whl#sha256=bab6ec3cffaa34d52dc0205b83159f6e923847ddfdf494b0c93160e3ba061723 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,179 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.6-py3-none-any.whl#sha256=e15ec359d56e12a347909b6f8a8e95dfd0bc3c62eeef86496220cfdd29338c4b (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,179 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.5-py3-none-any.whl#sha256=56e0d62bd48bfa043e59ef94e033c8f09581b0449928cc4ac9ec1f6052ff0a39 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,180 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-1.0.4-py3-none-any.whl#sha256=5e175512550dc24c2d30b9075bb2914cafdb2c653aa60975cde6c63a2829d542 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.10) 2023-12-18T22:06:05,180 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.6-py3-none-any.whl#sha256=5a8149e8f3e41c8fd242361d7a5918eb005bfd8e8c5639321d4ecbfe917a1292 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:05,181 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.3-py3-none-any.whl#sha256=67c7cf263830bd4c4c62dff28d0073f938ecb1055f487f43a15f935ef54e461d (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:05,182 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.1-py3-none-any.whl#sha256=f960697437ecf9bf8309e94fbb729ae1440468a7de29b264a61fb6de39368762 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:05,182 Skipping link: No binaries permitted for nmdc-runtime: https://www.piwheels.org/simple/nmdc-runtime/nmdc_runtime-0.1.0-py3-none-any.whl#sha256=7a67f7282667a4265a04bf134156531046957b197da284d9550cf19e96541943 (from https://www.piwheels.org/simple/nmdc-runtime/) (requires-python:>=3.8) 2023-12-18T22:06:05,183 Skipping link: not a file: https://www.piwheels.org/simple/nmdc-runtime/ 2023-12-18T22:06:05,183 Skipping link: not a file: https://pypi.org/simple/nmdc-runtime/ 2023-12-18T22:06:05,204 Given no hashes to check 1 links for project 'nmdc-runtime': discarding no candidates 2023-12-18T22:06:05,222 Collecting nmdc-runtime==1.2.0 2023-12-18T22:06:05,225 Created temporary directory: /tmp/pip-unpack-uvz762v6 2023-12-18T22:06:05,453 Downloading nmdc_runtime-1.2.0.tar.gz (63.7 MB) 2023-12-18T22:06:19,838 Added nmdc-runtime==1.2.0 from https://files.pythonhosted.org/packages/67/bc/bd9a296ea7257aaa0c72a1f9be3a197f6e2d71c337574e3d16198cd6242e/nmdc_runtime-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-6gi62c0e' 2023-12-18T22:06:19,840 Running setup.py (path:/tmp/pip-wheel-9hbyfpof/nmdc-runtime_99f073f54a034e8bb08b1dcee5ae22e1/setup.py) egg_info for package nmdc-runtime 2023-12-18T22:06:19,841 Created temporary directory: /tmp/pip-pip-egg-info-linsd1mo 2023-12-18T22:06:19,841 Preparing metadata (setup.py): started 2023-12-18T22:06:19,842 Running command python setup.py egg_info 2023-12-18T22:06:20,569 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-12-18T22:06:20,569 !! 2023-12-18T22:06:20,570 ******************************************************************************** 2023-12-18T22:06:20,570 Requirements should be satisfied by a PEP 517 installer. 2023-12-18T22:06:20,571 If you are using pip, you can try `pip install --use-pep517`. 2023-12-18T22:06:20,571 ******************************************************************************** 2023-12-18T22:06:20,573 !! 2023-12-18T22:06:20,573 dist.fetch_build_eggs(dist.setup_requires) 2023-12-18T22:06:23,640 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-12-18T22:06:23,740 running egg_info 2023-12-18T22:06:23,741 creating /tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info 2023-12-18T22:06:23,768 writing /tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/PKG-INFO 2023-12-18T22:06:23,771 writing dependency_links to /tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/dependency_links.txt 2023-12-18T22:06:23,773 writing entry points to /tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/entry_points.txt 2023-12-18T22:06:23,774 writing top-level names to /tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/top_level.txt 2023-12-18T22:06:23,776 writing manifest file '/tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-18T22:06:23,967 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-12-18T22:06:23,973 reading manifest file '/tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-18T22:06:23,975 adding license file 'LICENSE' 2023-12-18T22:06:23,978 writing manifest file '/tmp/pip-pip-egg-info-linsd1mo/nmdc_runtime.egg-info/SOURCES.txt' 2023-12-18T22:06:24,092 Preparing metadata (setup.py): finished with status 'done' 2023-12-18T22:06:24,096 Source in /tmp/pip-wheel-9hbyfpof/nmdc-runtime_99f073f54a034e8bb08b1dcee5ae22e1 has version 1.2.0, which satisfies requirement nmdc-runtime==1.2.0 from https://files.pythonhosted.org/packages/67/bc/bd9a296ea7257aaa0c72a1f9be3a197f6e2d71c337574e3d16198cd6242e/nmdc_runtime-1.2.0.tar.gz 2023-12-18T22:06:24,097 Removed nmdc-runtime==1.2.0 from https://files.pythonhosted.org/packages/67/bc/bd9a296ea7257aaa0c72a1f9be3a197f6e2d71c337574e3d16198cd6242e/nmdc_runtime-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-6gi62c0e' 2023-12-18T22:06:24,103 Created temporary directory: /tmp/pip-unpack-jceqwyuq 2023-12-18T22:06:24,104 Created temporary directory: /tmp/pip-unpack-vsdv0i59 2023-12-18T22:06:24,108 Building wheels for collected packages: nmdc-runtime 2023-12-18T22:06:24,112 Created temporary directory: /tmp/pip-wheel-0fi_h82p 2023-12-18T22:06:24,113 Building wheel for nmdc-runtime (setup.py): started 2023-12-18T22:06:24,114 Destination directory: /tmp/pip-wheel-0fi_h82p 2023-12-18T22:06:24,115 Running command python setup.py bdist_wheel 2023-12-18T22:06:24,810 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2023-12-18T22:06:24,810 !! 2023-12-18T22:06:24,811 ******************************************************************************** 2023-12-18T22:06:24,811 Requirements should be satisfied by a PEP 517 installer. 2023-12-18T22:06:24,812 If you are using pip, you can try `pip install --use-pep517`. 2023-12-18T22:06:24,812 ******************************************************************************** 2023-12-18T22:06:24,813 !! 2023-12-18T22:06:24,814 dist.fetch_build_eggs(dist.setup_requires) 2023-12-18T22:06:25,332 WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' 2023-12-18T22:06:25,424 running bdist_wheel 2023-12-18T22:06:25,530 running build 2023-12-18T22:06:25,531 running build_py 2023-12-18T22:06:25,560 creating build 2023-12-18T22:06:25,561 creating build/lib 2023-12-18T22:06:25,561 creating build/lib/nmdc_runtime 2023-12-18T22:06:25,563 copying nmdc_runtime/main.py -> build/lib/nmdc_runtime 2023-12-18T22:06:25,564 copying nmdc_runtime/util.py -> build/lib/nmdc_runtime 2023-12-18T22:06:25,567 copying nmdc_runtime/containers.py -> build/lib/nmdc_runtime 2023-12-18T22:06:25,568 copying nmdc_runtime/__init__.py -> build/lib/nmdc_runtime 2023-12-18T22:06:25,570 creating build/lib/nmdc_runtime/minter 2023-12-18T22:06:25,571 copying nmdc_runtime/minter/bootstrap.py -> build/lib/nmdc_runtime/minter 2023-12-18T22:06:25,573 copying nmdc_runtime/minter/__init__.py -> build/lib/nmdc_runtime/minter 2023-12-18T22:06:25,574 copying nmdc_runtime/minter/config.py -> build/lib/nmdc_runtime/minter 2023-12-18T22:06:25,577 creating build/lib/nmdc_runtime/domain 2023-12-18T22:06:25,577 copying nmdc_runtime/domain/__init__.py -> build/lib/nmdc_runtime/domain 2023-12-18T22:06:25,579 creating build/lib/nmdc_runtime/site 2023-12-18T22:06:25,580 copying nmdc_runtime/site/ops.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,583 copying nmdc_runtime/site/resources.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,585 copying nmdc_runtime/site/util.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,587 copying nmdc_runtime/site/__init__.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,588 copying nmdc_runtime/site/graphs.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,590 copying nmdc_runtime/site/repository.py -> build/lib/nmdc_runtime/site 2023-12-18T22:06:25,593 creating build/lib/nmdc_runtime/client 2023-12-18T22:06:25,594 copying nmdc_runtime/client/__init__.py -> build/lib/nmdc_runtime/client 2023-12-18T22:06:25,596 creating build/lib/nmdc_runtime/infrastructure 2023-12-18T22:06:25,597 copying nmdc_runtime/infrastructure/__init__.py -> build/lib/nmdc_runtime/infrastructure 2023-12-18T22:06:25,599 creating build/lib/nmdc_runtime/core 2023-12-18T22:06:25,600 copying nmdc_runtime/core/__init__.py -> build/lib/nmdc_runtime/core 2023-12-18T22:06:25,602 creating build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,603 copying nmdc_runtime/lib/extract_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,604 copying nmdc_runtime/lib/__init__.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,606 copying nmdc_runtime/lib/transform_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,608 copying nmdc_runtime/lib/nmdc_dataframes.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,611 copying nmdc_runtime/lib/nmdc_etl_class.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,613 copying nmdc_runtime/lib/load_nmdc_data.py -> build/lib/nmdc_runtime/lib 2023-12-18T22:06:25,615 creating build/lib/nmdc_runtime/minter/domain 2023-12-18T22:06:25,616 copying nmdc_runtime/minter/domain/__init__.py -> build/lib/nmdc_runtime/minter/domain 2023-12-18T22:06:25,618 copying nmdc_runtime/minter/domain/model.py -> build/lib/nmdc_runtime/minter/domain 2023-12-18T22:06:25,620 creating build/lib/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,621 copying nmdc_runtime/minter/adapters/__init__.py -> build/lib/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,622 copying nmdc_runtime/minter/adapters/repository.py -> build/lib/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,625 creating build/lib/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,626 copying nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,627 copying nmdc_runtime/minter/entrypoints/__init__.py -> build/lib/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,629 creating build/lib/nmdc_runtime/domain/users 2023-12-18T22:06:25,630 copying nmdc_runtime/domain/users/queriesInterface.py -> build/lib/nmdc_runtime/domain/users 2023-12-18T22:06:25,632 copying nmdc_runtime/domain/users/__init__.py -> build/lib/nmdc_runtime/domain/users 2023-12-18T22:06:25,633 copying nmdc_runtime/domain/users/userService.py -> build/lib/nmdc_runtime/domain/users 2023-12-18T22:06:25,635 copying nmdc_runtime/domain/users/userSchema.py -> build/lib/nmdc_runtime/domain/users 2023-12-18T22:06:25,637 creating build/lib/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,637 copying nmdc_runtime/site/drsobjects/ingest.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,639 copying nmdc_runtime/site/drsobjects/__init__.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,641 copying nmdc_runtime/site/drsobjects/registration.py -> build/lib/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,643 creating build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,644 copying nmdc_runtime/site/translation/translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,646 copying nmdc_runtime/site/translation/gold_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,648 copying nmdc_runtime/site/translation/gold.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,650 copying nmdc_runtime/site/translation/submission_portal_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,653 copying nmdc_runtime/site/translation/neon_benthic_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,655 copying nmdc_runtime/site/translation/util.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,657 copying nmdc_runtime/site/translation/__init__.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,659 copying nmdc_runtime/site/translation/emsl.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,660 copying nmdc_runtime/site/translation/neon_soil_translator.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,663 copying nmdc_runtime/site/translation/jgi.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,665 copying nmdc_runtime/site/translation/neon_utils.py -> build/lib/nmdc_runtime/site/translation 2023-12-18T22:06:25,667 creating build/lib/nmdc_runtime/site/export 2023-12-18T22:06:25,668 copying nmdc_runtime/site/export/study_metadata.py -> build/lib/nmdc_runtime/site/export 2023-12-18T22:06:25,670 copying nmdc_runtime/site/export/__init__.py -> build/lib/nmdc_runtime/site/export 2023-12-18T22:06:25,672 creating build/lib/nmdc_runtime/site/normalization 2023-12-18T22:06:25,673 copying nmdc_runtime/site/normalization/gold.py -> build/lib/nmdc_runtime/site/normalization 2023-12-18T22:06:25,674 copying nmdc_runtime/site/normalization/__init__.py -> build/lib/nmdc_runtime/site/normalization 2023-12-18T22:06:25,676 creating build/lib/nmdc_runtime/site/backup 2023-12-18T22:06:25,677 copying nmdc_runtime/site/backup/__init__.py -> build/lib/nmdc_runtime/site/backup 2023-12-18T22:06:25,679 copying nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/lib/nmdc_runtime/site/backup 2023-12-18T22:06:25,681 copying nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/lib/nmdc_runtime/site/backup 2023-12-18T22:06:25,683 copying nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/lib/nmdc_runtime/site/backup 2023-12-18T22:06:25,685 creating build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,685 copying nmdc_runtime/site/validation/gold.py -> build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,687 copying nmdc_runtime/site/validation/util.py -> build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,689 copying nmdc_runtime/site/validation/__init__.py -> build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,690 copying nmdc_runtime/site/validation/emsl.py -> build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,692 copying nmdc_runtime/site/validation/jgi.py -> build/lib/nmdc_runtime/site/validation 2023-12-18T22:06:25,694 creating build/lib/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,695 copying nmdc_runtime/site/terminusdb/ingest.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,696 copying nmdc_runtime/site/terminusdb/__init__.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,698 copying nmdc_runtime/site/terminusdb/generate.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,700 copying nmdc_runtime/site/terminusdb/schema.py -> build/lib/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,703 creating build/lib/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,704 copying nmdc_runtime/site/changesheets/base.py -> build/lib/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,706 copying nmdc_runtime/site/changesheets/__init__.py -> build/lib/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,708 creating build/lib/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,709 copying nmdc_runtime/infrastructure/database/db.py -> build/lib/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,710 copying nmdc_runtime/infrastructure/database/__init__.py -> build/lib/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,712 creating build/lib/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,713 copying nmdc_runtime/infrastructure/database/models/user.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,715 copying nmdc_runtime/infrastructure/database/models/__init__.py -> build/lib/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,717 creating build/lib/nmdc_runtime/core/db 2023-12-18T22:06:25,718 copying nmdc_runtime/core/db/__init__.py -> build/lib/nmdc_runtime/core/db 2023-12-18T22:06:25,719 copying nmdc_runtime/core/db/Database.py -> build/lib/nmdc_runtime/core/db 2023-12-18T22:06:25,721 creating build/lib/nmdc_runtime/core/exceptions 2023-12-18T22:06:25,722 copying nmdc_runtime/core/exceptions/base.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-18T22:06:25,724 copying nmdc_runtime/core/exceptions/__init__.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-18T22:06:25,726 copying nmdc_runtime/core/exceptions/token.py -> build/lib/nmdc_runtime/core/exceptions 2023-12-18T22:06:25,773 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-18T22:06:25,773 !! 2023-12-18T22:06:25,775 ******************************************************************************** 2023-12-18T22:06:25,775 Please avoid running ``setup.py`` directly. 2023-12-18T22:06:25,776 Instead, use pypa/build, pypa/installer or other 2023-12-18T22:06:25,776 standards-based tools. 2023-12-18T22:06:25,777 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-18T22:06:25,778 ******************************************************************************** 2023-12-18T22:06:25,779 !! 2023-12-18T22:06:25,779 self.initialize_options() 2023-12-18T22:06:25,803 installing to build/bdist.linux-armv7l/wheel 2023-12-18T22:06:25,804 running install 2023-12-18T22:06:25,827 running install_lib 2023-12-18T22:06:25,854 creating build/bdist.linux-armv7l 2023-12-18T22:06:25,855 creating build/bdist.linux-armv7l/wheel 2023-12-18T22:06:25,857 creating build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-18T22:06:25,858 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-18T22:06:25,860 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-18T22:06:25,861 copying build/lib/nmdc_runtime/minter/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-18T22:06:25,862 copying build/lib/nmdc_runtime/minter/domain/model.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/domain 2023-12-18T22:06:25,864 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,865 copying build/lib/nmdc_runtime/minter/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,867 copying build/lib/nmdc_runtime/minter/adapters/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/adapters 2023-12-18T22:06:25,869 copying build/lib/nmdc_runtime/minter/bootstrap.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-18T22:06:25,871 copying build/lib/nmdc_runtime/minter/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-18T22:06:25,872 copying build/lib/nmdc_runtime/minter/config.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter 2023-12-18T22:06:25,875 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,876 copying build/lib/nmdc_runtime/minter/entrypoints/fastapi_app.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,878 copying build/lib/nmdc_runtime/minter/entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/minter/entrypoints 2023-12-18T22:06:25,880 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-12-18T22:06:25,881 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-18T22:06:25,882 copying build/lib/nmdc_runtime/domain/users/queriesInterface.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-18T22:06:25,884 copying build/lib/nmdc_runtime/domain/users/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-18T22:06:25,885 copying build/lib/nmdc_runtime/domain/users/userService.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-18T22:06:25,887 copying build/lib/nmdc_runtime/domain/users/userSchema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain/users 2023-12-18T22:06:25,889 copying build/lib/nmdc_runtime/domain/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/domain 2023-12-18T22:06:25,891 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,892 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,893 copying build/lib/nmdc_runtime/site/drsobjects/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,895 copying build/lib/nmdc_runtime/site/drsobjects/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,897 copying build/lib/nmdc_runtime/site/drsobjects/registration.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/drsobjects 2023-12-18T22:06:25,899 copying build/lib/nmdc_runtime/site/ops.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,901 copying build/lib/nmdc_runtime/site/resources.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,904 copying build/lib/nmdc_runtime/site/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,906 copying build/lib/nmdc_runtime/site/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,908 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,909 copying build/lib/nmdc_runtime/site/translation/translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,911 copying build/lib/nmdc_runtime/site/translation/gold_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,913 copying build/lib/nmdc_runtime/site/translation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,915 copying build/lib/nmdc_runtime/site/translation/submission_portal_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,917 copying build/lib/nmdc_runtime/site/translation/neon_benthic_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,920 copying build/lib/nmdc_runtime/site/translation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,922 copying build/lib/nmdc_runtime/site/translation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,923 copying build/lib/nmdc_runtime/site/translation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,925 copying build/lib/nmdc_runtime/site/translation/neon_soil_translator.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,928 copying build/lib/nmdc_runtime/site/translation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,929 copying build/lib/nmdc_runtime/site/translation/neon_utils.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/translation 2023-12-18T22:06:25,932 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-18T22:06:25,933 copying build/lib/nmdc_runtime/site/export/study_metadata.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-18T22:06:25,935 copying build/lib/nmdc_runtime/site/export/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/export 2023-12-18T22:06:25,936 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-18T22:06:25,937 copying build/lib/nmdc_runtime/site/normalization/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-18T22:06:25,939 copying build/lib/nmdc_runtime/site/normalization/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/normalization 2023-12-18T22:06:25,941 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-18T22:06:25,942 copying build/lib/nmdc_runtime/site/backup/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-18T22:06:25,944 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoimport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-18T22:06:25,946 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongoexport.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-18T22:06:25,948 copying build/lib/nmdc_runtime/site/backup/nmdcdb_mongodump.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/backup 2023-12-18T22:06:25,950 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,951 copying build/lib/nmdc_runtime/site/validation/gold.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,953 copying build/lib/nmdc_runtime/site/validation/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,955 copying build/lib/nmdc_runtime/site/validation/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,956 copying build/lib/nmdc_runtime/site/validation/emsl.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,958 copying build/lib/nmdc_runtime/site/validation/jgi.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/validation 2023-12-18T22:06:25,960 copying build/lib/nmdc_runtime/site/graphs.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,963 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,964 copying build/lib/nmdc_runtime/site/terminusdb/ingest.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,966 copying build/lib/nmdc_runtime/site/terminusdb/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,967 copying build/lib/nmdc_runtime/site/terminusdb/generate.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,969 copying build/lib/nmdc_runtime/site/terminusdb/schema.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/terminusdb 2023-12-18T22:06:25,973 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,973 copying build/lib/nmdc_runtime/site/changesheets/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,975 copying build/lib/nmdc_runtime/site/changesheets/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site/changesheets 2023-12-18T22:06:25,977 copying build/lib/nmdc_runtime/site/repository.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/site 2023-12-18T22:06:25,980 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-12-18T22:06:25,981 copying build/lib/nmdc_runtime/client/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/client 2023-12-18T22:06:25,982 copying build/lib/nmdc_runtime/main.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-18T22:06:25,984 copying build/lib/nmdc_runtime/util.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-18T22:06:25,986 copying build/lib/nmdc_runtime/containers.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-18T22:06:25,988 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-12-18T22:06:25,990 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,991 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,992 copying build/lib/nmdc_runtime/infrastructure/database/models/user.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,994 copying build/lib/nmdc_runtime/infrastructure/database/models/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database/models 2023-12-18T22:06:25,995 copying build/lib/nmdc_runtime/infrastructure/database/db.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,997 copying build/lib/nmdc_runtime/infrastructure/database/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure/database 2023-12-18T22:06:25,999 copying build/lib/nmdc_runtime/infrastructure/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/infrastructure 2023-12-18T22:06:26,000 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-12-18T22:06:26,002 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-18T22:06:26,003 copying build/lib/nmdc_runtime/core/db/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-18T22:06:26,004 copying build/lib/nmdc_runtime/core/db/Database.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/db 2023-12-18T22:06:26,006 copying build/lib/nmdc_runtime/core/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core 2023-12-18T22:06:26,008 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-18T22:06:26,009 copying build/lib/nmdc_runtime/core/exceptions/base.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-18T22:06:26,011 copying build/lib/nmdc_runtime/core/exceptions/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-18T22:06:26,013 copying build/lib/nmdc_runtime/core/exceptions/token.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/core/exceptions 2023-12-18T22:06:26,014 copying build/lib/nmdc_runtime/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime 2023-12-18T22:06:26,017 creating build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,017 copying build/lib/nmdc_runtime/lib/extract_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,019 copying build/lib/nmdc_runtime/lib/__init__.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,021 copying build/lib/nmdc_runtime/lib/transform_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,024 copying build/lib/nmdc_runtime/lib/nmdc_dataframes.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,027 copying build/lib/nmdc_runtime/lib/nmdc_etl_class.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,029 copying build/lib/nmdc_runtime/lib/load_nmdc_data.py -> build/bdist.linux-armv7l/wheel/nmdc_runtime/lib 2023-12-18T22:06:26,030 running install_egg_info 2023-12-18T22:06:26,084 running egg_info 2023-12-18T22:06:26,111 writing nmdc_runtime.egg-info/PKG-INFO 2023-12-18T22:06:26,114 writing dependency_links to nmdc_runtime.egg-info/dependency_links.txt 2023-12-18T22:06:26,116 writing entry points to nmdc_runtime.egg-info/entry_points.txt 2023-12-18T22:06:26,118 writing top-level names to nmdc_runtime.egg-info/top_level.txt 2023-12-18T22:06:26,226 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2023-12-18T22:06:26,229 reading manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-12-18T22:06:26,285 adding license file 'LICENSE' 2023-12-18T22:06:26,302 writing manifest file 'nmdc_runtime.egg-info/SOURCES.txt' 2023-12-18T22:06:26,304 Copying nmdc_runtime.egg-info to build/bdist.linux-armv7l/wheel/nmdc_runtime-1.2.0-py3.11.egg-info 2023-12-18T22:06:26,314 running install_scripts 2023-12-18T22:06:26,327 creating build/bdist.linux-armv7l/wheel/nmdc_runtime-1.2.0.dist-info/WHEEL 2023-12-18T22:06:26,330 creating '/tmp/pip-wheel-0fi_h82p/nmdc_runtime-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-18T22:06:26,332 adding 'nmdc_runtime/__init__.py' 2023-12-18T22:06:26,333 adding 'nmdc_runtime/containers.py' 2023-12-18T22:06:26,334 adding 'nmdc_runtime/main.py' 2023-12-18T22:06:26,337 adding 'nmdc_runtime/util.py' 2023-12-18T22:06:26,339 adding 'nmdc_runtime/client/__init__.py' 2023-12-18T22:06:26,340 adding 'nmdc_runtime/core/__init__.py' 2023-12-18T22:06:26,342 adding 'nmdc_runtime/core/db/Database.py' 2023-12-18T22:06:26,343 adding 'nmdc_runtime/core/db/__init__.py' 2023-12-18T22:06:26,345 adding 'nmdc_runtime/core/exceptions/__init__.py' 2023-12-18T22:06:26,346 adding 'nmdc_runtime/core/exceptions/base.py' 2023-12-18T22:06:26,347 adding 'nmdc_runtime/core/exceptions/token.py' 2023-12-18T22:06:26,349 adding 'nmdc_runtime/domain/__init__.py' 2023-12-18T22:06:26,350 adding 'nmdc_runtime/domain/users/__init__.py' 2023-12-18T22:06:26,351 adding 'nmdc_runtime/domain/users/queriesInterface.py' 2023-12-18T22:06:26,352 adding 'nmdc_runtime/domain/users/userSchema.py' 2023-12-18T22:06:26,354 adding 'nmdc_runtime/domain/users/userService.py' 2023-12-18T22:06:26,355 adding 'nmdc_runtime/infrastructure/__init__.py' 2023-12-18T22:06:26,357 adding 'nmdc_runtime/infrastructure/database/__init__.py' 2023-12-18T22:06:26,358 adding 'nmdc_runtime/infrastructure/database/db.py' 2023-12-18T22:06:26,359 adding 'nmdc_runtime/infrastructure/database/models/__init__.py' 2023-12-18T22:06:26,361 adding 'nmdc_runtime/infrastructure/database/models/user.py' 2023-12-18T22:06:26,362 adding 'nmdc_runtime/lib/__init__.py' 2023-12-18T22:06:26,363 adding 'nmdc_runtime/lib/extract_nmdc_data.py' 2023-12-18T22:06:26,365 adding 'nmdc_runtime/lib/load_nmdc_data.py' 2023-12-18T22:06:26,368 adding 'nmdc_runtime/lib/nmdc_dataframes.py' 2023-12-18T22:06:26,370 adding 'nmdc_runtime/lib/nmdc_etl_class.py' 2023-12-18T22:06:26,375 adding 'nmdc_runtime/lib/transform_nmdc_data.py' 2023-12-18T22:06:26,377 adding 'nmdc_runtime/minter/__init__.py' 2023-12-18T22:06:26,379 adding 'nmdc_runtime/minter/bootstrap.py' 2023-12-18T22:06:26,380 adding 'nmdc_runtime/minter/config.py' 2023-12-18T22:06:26,382 adding 'nmdc_runtime/minter/adapters/__init__.py' 2023-12-18T22:06:26,383 adding 'nmdc_runtime/minter/adapters/repository.py' 2023-12-18T22:06:26,385 adding 'nmdc_runtime/minter/domain/__init__.py' 2023-12-18T22:06:26,386 adding 'nmdc_runtime/minter/domain/model.py' 2023-12-18T22:06:26,387 adding 'nmdc_runtime/minter/entrypoints/__init__.py' 2023-12-18T22:06:26,389 adding 'nmdc_runtime/minter/entrypoints/fastapi_app.py' 2023-12-18T22:06:26,390 adding 'nmdc_runtime/site/__init__.py' 2023-12-18T22:06:26,392 adding 'nmdc_runtime/site/graphs.py' 2023-12-18T22:06:26,395 adding 'nmdc_runtime/site/ops.py' 2023-12-18T22:06:26,398 adding 'nmdc_runtime/site/repository.py' 2023-12-18T22:06:26,400 adding 'nmdc_runtime/site/resources.py' 2023-12-18T22:06:26,401 adding 'nmdc_runtime/site/util.py' 2023-12-18T22:06:26,403 adding 'nmdc_runtime/site/backup/__init__.py' 2023-12-18T22:06:26,404 adding 'nmdc_runtime/site/backup/nmdcdb_mongodump.py' 2023-12-18T22:06:26,405 adding 'nmdc_runtime/site/backup/nmdcdb_mongoexport.py' 2023-12-18T22:06:26,407 adding 'nmdc_runtime/site/backup/nmdcdb_mongoimport.py' 2023-12-18T22:06:26,408 adding 'nmdc_runtime/site/changesheets/__init__.py' 2023-12-18T22:06:26,409 adding 'nmdc_runtime/site/changesheets/base.py' 2023-12-18T22:06:26,411 adding 'nmdc_runtime/site/drsobjects/__init__.py' 2023-12-18T22:06:26,412 adding 'nmdc_runtime/site/drsobjects/ingest.py' 2023-12-18T22:06:26,413 adding 'nmdc_runtime/site/drsobjects/registration.py' 2023-12-18T22:06:26,415 adding 'nmdc_runtime/site/export/__init__.py' 2023-12-18T22:06:26,416 adding 'nmdc_runtime/site/export/study_metadata.py' 2023-12-18T22:06:26,418 adding 'nmdc_runtime/site/normalization/__init__.py' 2023-12-18T22:06:26,419 adding 'nmdc_runtime/site/normalization/gold.py' 2023-12-18T22:06:26,421 adding 'nmdc_runtime/site/terminusdb/__init__.py' 2023-12-18T22:06:26,422 adding 'nmdc_runtime/site/terminusdb/generate.py' 2023-12-18T22:06:26,424 adding 'nmdc_runtime/site/terminusdb/ingest.py' 2023-12-18T22:06:26,431 adding 'nmdc_runtime/site/terminusdb/schema.py' 2023-12-18T22:06:26,433 adding 'nmdc_runtime/site/translation/__init__.py' 2023-12-18T22:06:26,435 adding 'nmdc_runtime/site/translation/emsl.py' 2023-12-18T22:06:26,436 adding 'nmdc_runtime/site/translation/gold.py' 2023-12-18T22:06:26,439 adding 'nmdc_runtime/site/translation/gold_translator.py' 2023-12-18T22:06:26,440 adding 'nmdc_runtime/site/translation/jgi.py' 2023-12-18T22:06:26,443 adding 'nmdc_runtime/site/translation/neon_benthic_translator.py' 2023-12-18T22:06:26,446 adding 'nmdc_runtime/site/translation/neon_soil_translator.py' 2023-12-18T22:06:26,448 adding 'nmdc_runtime/site/translation/neon_utils.py' 2023-12-18T22:06:26,451 adding 'nmdc_runtime/site/translation/submission_portal_translator.py' 2023-12-18T22:06:26,453 adding 'nmdc_runtime/site/translation/translator.py' 2023-12-18T22:06:26,454 adding 'nmdc_runtime/site/translation/util.py' 2023-12-18T22:06:26,456 adding 'nmdc_runtime/site/validation/__init__.py' 2023-12-18T22:06:26,457 adding 'nmdc_runtime/site/validation/emsl.py' 2023-12-18T22:06:26,458 adding 'nmdc_runtime/site/validation/gold.py' 2023-12-18T22:06:26,459 adding 'nmdc_runtime/site/validation/jgi.py' 2023-12-18T22:06:26,460 adding 'nmdc_runtime/site/validation/util.py' 2023-12-18T22:06:26,463 adding 'nmdc_runtime-1.2.0.dist-info/LICENSE' 2023-12-18T22:06:26,464 adding 'nmdc_runtime-1.2.0.dist-info/METADATA' 2023-12-18T22:06:26,465 adding 'nmdc_runtime-1.2.0.dist-info/WHEEL' 2023-12-18T22:06:26,466 adding 'nmdc_runtime-1.2.0.dist-info/entry_points.txt' 2023-12-18T22:06:26,467 adding 'nmdc_runtime-1.2.0.dist-info/top_level.txt' 2023-12-18T22:06:26,469 adding 'nmdc_runtime-1.2.0.dist-info/RECORD' 2023-12-18T22:06:26,472 removing build/bdist.linux-armv7l/wheel 2023-12-18T22:06:26,611 Building wheel for nmdc-runtime (setup.py): finished with status 'done' 2023-12-18T22:06:26,615 Created wheel for nmdc-runtime: filename=nmdc_runtime-1.2.0-py3-none-any.whl size=127396 sha256=21a501b7fa193fe956a1a992fdcd4388ae80f57fa6354e14e2855edde761c39d 2023-12-18T22:06:26,617 Stored in directory: /tmp/pip-ephem-wheel-cache-yznbx_x2/wheels/3e/62/c4/ede0c32988c40c87fc16c9602899802ddbb33ee01dcf67695b 2023-12-18T22:06:26,630 Successfully built nmdc-runtime 2023-12-18T22:06:26,636 Removed build tracker: '/tmp/pip-build-tracker-6gi62c0e'