2023-12-27T16:51:08,607 Created temporary directory: /tmp/pip-build-tracker-kp63ibl4 2023-12-27T16:51:08,608 Initialized build tracking at /tmp/pip-build-tracker-kp63ibl4 2023-12-27T16:51:08,608 Created build tracker: /tmp/pip-build-tracker-kp63ibl4 2023-12-27T16:51:08,609 Entered build tracker: /tmp/pip-build-tracker-kp63ibl4 2023-12-27T16:51:08,610 Created temporary directory: /tmp/pip-wheel-4aqw36b7 2023-12-27T16:51:08,613 Created temporary directory: /tmp/pip-ephem-wheel-cache-23v9d2fa 2023-12-27T16:51:08,638 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-27T16:51:08,641 2 location(s) to search for versions of mitos: 2023-12-27T16:51:08,641 * https://pypi.org/simple/mitos/ 2023-12-27T16:51:08,641 * https://www.piwheels.org/simple/mitos/ 2023-12-27T16:51:08,642 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2023-12-27T16:51:08,643 Getting page https://pypi.org/simple/mitos/ 2023-12-27T16:51:08,644 Found index url https://pypi.org/simple/ 2023-12-27T16:51:08,787 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2023-12-27T16:51:08,792 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-27T16:51:08,793 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2023-12-27T16:51:08,794 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2023-12-27T16:51:08,795 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2023-12-27T16:51:08,796 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2023-12-27T16:51:08,797 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2023-12-27T16:51:08,797 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2023-12-27T16:51:08,798 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-27T16:51:08,799 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2023-12-27T16:51:08,799 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2023-12-27T16:51:08,800 Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2 2023-12-27T16:51:08,801 Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3 2023-12-27T16:51:08,801 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2023-12-27T16:51:08,802 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2023-12-27T16:51:08,803 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2023-12-27T16:51:08,804 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2023-12-27T16:51:08,805 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2023-12-27T16:51:08,805 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2023-12-27T16:51:08,806 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2023-12-27T16:51:08,806 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2023-12-27T16:51:08,807 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-27T16:51:08,807 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2023-12-27T16:51:08,808 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2023-12-27T16:51:08,809 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2023-12-27T16:51:08,809 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2023-12-27T16:51:08,810 Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4 2023-12-27T16:51:08,811 Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5 2023-12-27T16:51:08,811 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2023-12-27T16:51:08,812 Getting page https://www.piwheels.org/simple/mitos/ 2023-12-27T16:51:08,813 Found index url https://www.piwheels.org/simple/ 2023-12-27T16:51:09,014 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2023-12-27T16:51:09,020 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,021 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,021 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,022 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,023 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,023 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,024 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,024 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,025 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,025 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,026 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,026 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,026 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,027 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,028 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,028 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,029 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,029 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,030 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,030 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,031 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2023-12-27T16:51:09,032 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2023-12-27T16:51:09,032 Skipping link: not a file: https://pypi.org/simple/mitos/ 2023-12-27T16:51:09,053 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2023-12-27T16:51:09,071 Collecting mitos==1.1.2 2023-12-27T16:51:09,073 Created temporary directory: /tmp/pip-unpack-9gmydfei 2023-12-27T16:51:09,289 Downloading mitos-1.1.2.tar.gz (246 kB) 2023-12-27T16:51:09,864 Added mitos==1.1.2 from https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-kp63ibl4' 2023-12-27T16:51:09,866 Running setup.py (path:/tmp/pip-wheel-4aqw36b7/mitos_d1c0b194b5ef47a883f29e52d5e19278/setup.py) egg_info for package mitos 2023-12-27T16:51:09,867 Created temporary directory: /tmp/pip-pip-egg-info-mw4e5lu9 2023-12-27T16:51:09,867 Preparing metadata (setup.py): started 2023-12-27T16:51:09,869 Running command python setup.py egg_info 2023-12-27T16:51:11,174 running egg_info 2023-12-27T16:51:11,176 creating /tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info 2023-12-27T16:51:11,203 writing /tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/PKG-INFO 2023-12-27T16:51:11,206 writing dependency_links to /tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/dependency_links.txt 2023-12-27T16:51:11,208 writing requirements to /tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/requires.txt 2023-12-27T16:51:11,209 writing top-level names to /tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/top_level.txt 2023-12-27T16:51:11,211 writing manifest file '/tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/SOURCES.txt' 2023-12-27T16:51:11,334 reading manifest file '/tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/SOURCES.txt' 2023-12-27T16:51:11,335 reading manifest template 'MANIFEST.in' 2023-12-27T16:51:11,338 adding license file 'LICENSE' 2023-12-27T16:51:11,341 writing manifest file '/tmp/pip-pip-egg-info-mw4e5lu9/mitos.egg-info/SOURCES.txt' 2023-12-27T16:51:11,448 Preparing metadata (setup.py): finished with status 'done' 2023-12-27T16:51:11,452 Source in /tmp/pip-wheel-4aqw36b7/mitos_d1c0b194b5ef47a883f29e52d5e19278 has version 1.1.2, which satisfies requirement mitos==1.1.2 from https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz 2023-12-27T16:51:11,453 Removed mitos==1.1.2 from https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-kp63ibl4' 2023-12-27T16:51:11,458 Created temporary directory: /tmp/pip-unpack-0ji4r3q8 2023-12-27T16:51:11,459 Created temporary directory: /tmp/pip-unpack-jrc64svo 2023-12-27T16:51:11,464 Building wheels for collected packages: mitos 2023-12-27T16:51:11,468 Created temporary directory: /tmp/pip-wheel-uj9uwr7n 2023-12-27T16:51:11,469 Building wheel for mitos (setup.py): started 2023-12-27T16:51:11,470 Destination directory: /tmp/pip-wheel-uj9uwr7n 2023-12-27T16:51:11,471 Running command python setup.py bdist_wheel 2023-12-27T16:51:12,465 running bdist_wheel 2023-12-27T16:51:12,558 running build 2023-12-27T16:51:12,559 running build_py 2023-12-27T16:51:12,586 creating build 2023-12-27T16:51:12,586 creating build/lib 2023-12-27T16:51:12,587 creating build/lib/mitos 2023-12-27T16:51:12,588 copying mitos/removegene.py -> build/lib/mitos 2023-12-27T16:51:12,590 copying mitos/mitos-extension.py -> build/lib/mitos 2023-12-27T16:51:12,593 copying mitos/prepareFiles.py -> build/lib/mitos 2023-12-27T16:51:12,595 copying mitos/convert_tree.py -> build/lib/mitos 2023-12-27T16:51:12,597 copying mitos/update-mitolog.py -> build/lib/mitos 2023-12-27T16:51:12,599 copying mitos/CONFIG.py -> build/lib/mitos 2023-12-27T16:51:12,601 copying mitos/trnadist.py -> build/lib/mitos 2023-12-27T16:51:12,603 copying mitos/mitoch_revisions.py -> build/lib/mitos 2023-12-27T16:51:12,607 copying mitos/mitos-extension2.py -> build/lib/mitos 2023-12-27T16:51:12,609 copying mitos/booreparser.py -> build/lib/mitos 2023-12-27T16:51:12,611 copying mitos/inihit.py -> build/lib/mitos 2023-12-27T16:51:12,613 copying mitos/__init__.py -> build/lib/mitos 2023-12-27T16:51:12,615 copying mitos/create_prot_fasta.py -> build/lib/mitos 2023-12-27T16:51:12,617 copying mitos/skew.py -> build/lib/mitos 2023-12-27T16:51:12,619 copying mitos/update-blastdb.py -> build/lib/mitos 2023-12-27T16:51:12,621 copying mitos/ogre-geneorder.py -> build/lib/mitos 2023-12-27T16:51:12,623 copying mitos/trna-cm.py -> build/lib/mitos 2023-12-27T16:51:12,629 copying mitos/mitoloc.py -> build/lib/mitos 2023-12-27T16:51:12,632 creating build/lib/mitos/update 2023-12-27T16:51:12,633 copying mitos/update/__init__.py -> build/lib/mitos/update 2023-12-27T16:51:12,636 creating build/lib/mitos/codon 2023-12-27T16:51:12,637 copying mitos/codon/__init__.py -> build/lib/mitos/codon 2023-12-27T16:51:12,639 creating build/lib/mitos/gfffile 2023-12-27T16:51:12,640 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2023-12-27T16:51:12,643 creating build/lib/mitos/mergefeature 2023-12-27T16:51:12,644 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2023-12-27T16:51:12,647 creating build/lib/mitos/rna 2023-12-27T16:51:12,648 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2023-12-27T16:51:12,650 copying mitos/rna/forester.py -> build/lib/mitos/rna 2023-12-27T16:51:12,652 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2023-12-27T16:51:12,656 creating build/lib/mitos/extprog 2023-12-27T16:51:12,657 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2023-12-27T16:51:12,660 creating build/lib/mitos/mitfi 2023-12-27T16:51:12,661 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2023-12-27T16:51:12,664 creating build/lib/mitos/sequence 2023-12-27T16:51:12,665 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2023-12-27T16:51:12,667 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2023-12-27T16:51:12,670 creating build/lib/mitos/tax 2023-12-27T16:51:12,671 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2023-12-27T16:51:12,674 creating build/lib/mitos/gb 2023-12-27T16:51:12,675 copying mitos/gb/unify.py -> build/lib/mitos/gb 2023-12-27T16:51:12,677 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2023-12-27T16:51:12,681 creating build/lib/mitos/bedfile 2023-12-27T16:51:12,682 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2023-12-27T16:51:12,685 creating build/lib/mitos/webserver 2023-12-27T16:51:12,686 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2023-12-27T16:51:12,692 creating build/lib/mitos/draw 2023-12-27T16:51:12,693 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2023-12-27T16:51:12,696 creating build/lib/mitos/mito 2023-12-27T16:51:12,697 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2023-12-27T16:51:12,699 creating build/lib/mitos/tbl 2023-12-27T16:51:12,701 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2023-12-27T16:51:12,704 creating build/lib/mitos/feature 2023-12-27T16:51:12,705 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2023-12-27T16:51:12,708 creating build/lib/mitos/util 2023-12-27T16:51:12,709 copying mitos/util/__init__.py -> build/lib/mitos/util 2023-12-27T16:51:12,712 creating build/lib/mitos/blast 2023-12-27T16:51:12,713 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2023-12-27T16:51:12,717 creating build/lib/mitos/mitofile 2023-12-27T16:51:12,718 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2023-12-27T16:51:12,720 creating build/lib/mitos/trna 2023-12-27T16:51:12,721 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2023-12-27T16:51:12,723 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2023-12-27T16:51:12,726 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2023-12-27T16:51:12,728 running egg_info 2023-12-27T16:51:12,783 writing mitos.egg-info/PKG-INFO 2023-12-27T16:51:12,786 writing dependency_links to mitos.egg-info/dependency_links.txt 2023-12-27T16:51:12,788 writing requirements to mitos.egg-info/requires.txt 2023-12-27T16:51:12,790 writing top-level names to mitos.egg-info/top_level.txt 2023-12-27T16:51:12,832 reading manifest file 'mitos.egg-info/SOURCES.txt' 2023-12-27T16:51:12,835 reading manifest template 'MANIFEST.in' 2023-12-27T16:51:12,838 adding license file 'LICENSE' 2023-12-27T16:51:12,842 writing manifest file 'mitos.egg-info/SOURCES.txt' 2023-12-27T16:51:12,845 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.codons' is absent from the `packages` configuration. 2023-12-27T16:51:12,846 !! 2023-12-27T16:51:12,847 ******************************************************************************** 2023-12-27T16:51:12,847 ############################ 2023-12-27T16:51:12,848 # Package would be ignored # 2023-12-27T16:51:12,848 ############################ 2023-12-27T16:51:12,849 Python recognizes 'mitos.codons' as an importable package[^1], 2023-12-27T16:51:12,849 but it is absent from setuptools' `packages` configuration. 2023-12-27T16:51:12,850 This leads to an ambiguous overall configuration. If you want to distribute this 2023-12-27T16:51:12,850 package, please make sure that 'mitos.codons' is explicitly added 2023-12-27T16:51:12,851 to the `packages` configuration field. 2023-12-27T16:51:12,852 Alternatively, you can also rely on setuptools' discovery methods 2023-12-27T16:51:12,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-12-27T16:51:12,853 instead of `find_packages(...)`/`find:`). 2023-12-27T16:51:12,854 You can read more about "package discovery" on setuptools documentation page: 2023-12-27T16:51:12,856 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-12-27T16:51:12,857 If you don't want 'mitos.codons' to be distributed and are 2023-12-27T16:51:12,857 already explicitly excluding 'mitos.codons' via 2023-12-27T16:51:12,858 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-12-27T16:51:12,858 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-12-27T16:51:12,859 combination with a more fine grained `package-data` configuration. 2023-12-27T16:51:12,860 You can read more about "package data files" on setuptools documentation page: 2023-12-27T16:51:12,861 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-12-27T16:51:12,863 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-12-27T16:51:12,863 even if it does not contain any `.py` files. 2023-12-27T16:51:12,864 On the other hand, currently there is no concept of package data 2023-12-27T16:51:12,864 directory, all directories are treated like packages. 2023-12-27T16:51:12,865 ******************************************************************************** 2023-12-27T16:51:12,866 !! 2023-12-27T16:51:12,867 check.warn(importable) 2023-12-27T16:51:12,867 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration. 2023-12-27T16:51:12,868 !! 2023-12-27T16:51:12,869 ******************************************************************************** 2023-12-27T16:51:12,870 ############################ 2023-12-27T16:51:12,870 # Package would be ignored # 2023-12-27T16:51:12,871 ############################ 2023-12-27T16:51:12,871 Python recognizes 'mitos.mitfi.parser' as an importable package[^1], 2023-12-27T16:51:12,872 but it is absent from setuptools' `packages` configuration. 2023-12-27T16:51:12,873 This leads to an ambiguous overall configuration. If you want to distribute this 2023-12-27T16:51:12,873 package, please make sure that 'mitos.mitfi.parser' is explicitly added 2023-12-27T16:51:12,874 to the `packages` configuration field. 2023-12-27T16:51:12,875 Alternatively, you can also rely on setuptools' discovery methods 2023-12-27T16:51:12,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-12-27T16:51:12,876 instead of `find_packages(...)`/`find:`). 2023-12-27T16:51:12,877 You can read more about "package discovery" on setuptools documentation page: 2023-12-27T16:51:12,878 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-12-27T16:51:12,879 If you don't want 'mitos.mitfi.parser' to be distributed and are 2023-12-27T16:51:12,880 already explicitly excluding 'mitos.mitfi.parser' via 2023-12-27T16:51:12,880 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-12-27T16:51:12,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-12-27T16:51:12,881 combination with a more fine grained `package-data` configuration. 2023-12-27T16:51:12,882 You can read more about "package data files" on setuptools documentation page: 2023-12-27T16:51:12,883 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-12-27T16:51:12,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-12-27T16:51:12,885 even if it does not contain any `.py` files. 2023-12-27T16:51:12,886 On the other hand, currently there is no concept of package data 2023-12-27T16:51:12,886 directory, all directories are treated like packages. 2023-12-27T16:51:12,887 ******************************************************************************** 2023-12-27T16:51:12,888 !! 2023-12-27T16:51:12,888 check.warn(importable) 2023-12-27T16:51:12,889 copying mitos/plotprot.R -> build/lib/mitos 2023-12-27T16:51:12,889 copying mitos/plotrna.R -> build/lib/mitos 2023-12-27T16:51:12,890 creating build/lib/mitos/codons 2023-12-27T16:51:12,890 copying mitos/codons/gc.prt -> build/lib/mitos/codons 2023-12-27T16:51:12,891 creating build/lib/mitos/mitfi/parser 2023-12-27T16:51:12,891 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2023-12-27T16:51:12,892 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2023-12-27T16:51:12,892 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2023-12-27T16:51:12,893 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2023-12-27T16:51:12,893 copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,894 copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,896 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,898 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,900 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,902 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,904 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,906 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2023-12-27T16:51:12,916 running build_scripts 2023-12-27T16:51:12,917 creating build/scripts-3.11 2023-12-27T16:51:12,918 copying and adjusting runmitos.py -> build/scripts-3.11 2023-12-27T16:51:12,921 copying and adjusting drawmitos.py -> build/scripts-3.11 2023-12-27T16:51:12,922 copying analyse.py -> build/scripts-3.11 2023-12-27T16:51:12,925 copying gcpp.py -> build/scripts-3.11 2023-12-27T16:51:12,927 copying and adjusting geneorder.py -> build/scripts-3.11 2023-12-27T16:51:12,929 copying and adjusting getfeatures.py -> build/scripts-3.11 2023-12-27T16:51:12,931 copying and adjusting getinfo.py -> build/scripts-3.11 2023-12-27T16:51:12,933 copying and adjusting refseqsplit.py -> build/scripts-3.11 2023-12-27T16:51:12,934 copying and adjusting subseq.py -> build/scripts-3.11 2023-12-27T16:51:12,936 copying and adjusting taxtree.py -> build/scripts-3.11 2023-12-27T16:51:12,938 copying mitos/plotprot.R -> build/scripts-3.11 2023-12-27T16:51:12,940 copying mitos/plotrna.R -> build/scripts-3.11 2023-12-27T16:51:12,941 changing mode of build/scripts-3.11/runmitos.py from 644 to 755 2023-12-27T16:51:12,942 changing mode of build/scripts-3.11/drawmitos.py from 644 to 755 2023-12-27T16:51:12,942 changing mode of build/scripts-3.11/analyse.py from 644 to 755 2023-12-27T16:51:12,943 changing mode of build/scripts-3.11/gcpp.py from 644 to 755 2023-12-27T16:51:12,943 changing mode of build/scripts-3.11/geneorder.py from 644 to 755 2023-12-27T16:51:12,944 changing mode of build/scripts-3.11/getfeatures.py from 644 to 755 2023-12-27T16:51:12,944 changing mode of build/scripts-3.11/getinfo.py from 644 to 755 2023-12-27T16:51:12,945 changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755 2023-12-27T16:51:12,945 changing mode of build/scripts-3.11/subseq.py from 644 to 755 2023-12-27T16:51:12,946 changing mode of build/scripts-3.11/taxtree.py from 644 to 755 2023-12-27T16:51:12,969 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-27T16:51:12,970 !! 2023-12-27T16:51:12,971 ******************************************************************************** 2023-12-27T16:51:12,971 Please avoid running ``setup.py`` directly. 2023-12-27T16:51:12,972 Instead, use pypa/build, pypa/installer or other 2023-12-27T16:51:12,972 standards-based tools. 2023-12-27T16:51:12,973 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-27T16:51:12,974 ******************************************************************************** 2023-12-27T16:51:12,975 !! 2023-12-27T16:51:12,976 self.initialize_options() 2023-12-27T16:51:12,995 installing to build/bdist.linux-armv7l/wheel 2023-12-27T16:51:12,996 running install 2023-12-27T16:51:13,019 running install_lib 2023-12-27T16:51:13,043 creating build/bdist.linux-armv7l 2023-12-27T16:51:13,044 creating build/bdist.linux-armv7l/wheel 2023-12-27T16:51:13,046 creating build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,047 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,049 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,051 creating build/bdist.linux-armv7l/wheel/mitos/update 2023-12-27T16:51:13,052 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2023-12-27T16:51:13,055 creating build/bdist.linux-armv7l/wheel/mitos/codon 2023-12-27T16:51:13,056 copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon 2023-12-27T16:51:13,058 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,060 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,062 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,065 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-12-27T16:51:13,066 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-12-27T16:51:13,068 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,070 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,073 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,075 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-12-27T16:51:13,076 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-12-27T16:51:13,080 creating build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-27T16:51:13,081 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-27T16:51:13,082 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-27T16:51:13,085 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-27T16:51:13,087 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,091 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2023-12-27T16:51:13,092 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2023-12-27T16:51:13,095 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-12-27T16:51:13,096 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-27T16:51:13,097 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-27T16:51:13,099 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-27T16:51:13,102 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-27T16:51:13,105 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-27T16:51:13,108 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-12-27T16:51:13,110 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,113 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-27T16:51:13,114 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-27T16:51:13,116 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-27T16:51:13,119 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,121 creating build/bdist.linux-armv7l/wheel/mitos/tax 2023-12-27T16:51:13,122 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2023-12-27T16:51:13,124 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,127 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,128 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,131 creating build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-27T16:51:13,132 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-27T16:51:13,134 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-27T16:51:13,137 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,140 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-12-27T16:51:13,141 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-12-27T16:51:13,143 copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,146 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,147 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,152 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,154 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,156 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,158 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,160 copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,162 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,163 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,165 copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-27T16:51:13,167 creating build/bdist.linux-armv7l/wheel/mitos/draw 2023-12-27T16:51:13,168 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2023-12-27T16:51:13,170 creating build/bdist.linux-armv7l/wheel/mitos/mito 2023-12-27T16:51:13,171 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2023-12-27T16:51:13,173 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,175 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2023-12-27T16:51:13,176 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2023-12-27T16:51:13,178 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,185 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,187 creating build/bdist.linux-armv7l/wheel/mitos/feature 2023-12-27T16:51:13,188 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2023-12-27T16:51:13,191 creating build/bdist.linux-armv7l/wheel/mitos/util 2023-12-27T16:51:13,192 copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util 2023-12-27T16:51:13,194 creating build/bdist.linux-armv7l/wheel/mitos/blast 2023-12-27T16:51:13,195 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2023-12-27T16:51:13,199 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-12-27T16:51:13,200 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-12-27T16:51:13,202 creating build/bdist.linux-armv7l/wheel/mitos/codons 2023-12-27T16:51:13,203 copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons 2023-12-27T16:51:13,206 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2023-12-27T16:51:13,208 creating build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-27T16:51:13,209 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-27T16:51:13,211 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-27T16:51:13,213 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-27T16:51:13,215 running install_egg_info 2023-12-27T16:51:13,246 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.2-py3.11.egg-info 2023-12-27T16:51:13,255 running install_scripts 2023-12-27T16:51:13,256 creating build/bdist.linux-armv7l/wheel/mitos-1.1.2.data 2023-12-27T16:51:13,257 creating build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,258 copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,260 copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,262 copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,264 copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,266 copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,268 copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,270 copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,272 copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,274 copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,276 copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,278 copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,280 copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts 2023-12-27T16:51:13,282 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/plotrna.R to 755 2023-12-27T16:51:13,282 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/refseqsplit.py to 755 2023-12-27T16:51:13,283 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/runmitos.py to 755 2023-12-27T16:51:13,283 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/getinfo.py to 755 2023-12-27T16:51:13,284 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/getfeatures.py to 755 2023-12-27T16:51:13,284 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/analyse.py to 755 2023-12-27T16:51:13,285 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/subseq.py to 755 2023-12-27T16:51:13,285 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/taxtree.py to 755 2023-12-27T16:51:13,286 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/drawmitos.py to 755 2023-12-27T16:51:13,286 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/gcpp.py to 755 2023-12-27T16:51:13,287 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/plotprot.R to 755 2023-12-27T16:51:13,287 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.2.data/scripts/geneorder.py to 755 2023-12-27T16:51:13,298 creating build/bdist.linux-armv7l/wheel/mitos-1.1.2.dist-info/WHEEL 2023-12-27T16:51:13,300 creating '/tmp/pip-wheel-uj9uwr7n/mitos-1.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-27T16:51:13,304 adding 'mitos/CONFIG.py' 2023-12-27T16:51:13,305 adding 'mitos/__init__.py' 2023-12-27T16:51:13,307 adding 'mitos/booreparser.py' 2023-12-27T16:51:13,310 adding 'mitos/convert_tree.py' 2023-12-27T16:51:13,313 adding 'mitos/create_prot_fasta.py' 2023-12-27T16:51:13,315 adding 'mitos/inihit.py' 2023-12-27T16:51:13,320 adding 'mitos/mitoch_revisions.py' 2023-12-27T16:51:13,322 adding 'mitos/mitoloc.py' 2023-12-27T16:51:13,324 adding 'mitos/mitos-extension.py' 2023-12-27T16:51:13,327 adding 'mitos/mitos-extension2.py' 2023-12-27T16:51:13,328 adding 'mitos/ogre-geneorder.py' 2023-12-27T16:51:13,330 adding 'mitos/plotprot.R' 2023-12-27T16:51:13,331 adding 'mitos/plotrna.R' 2023-12-27T16:51:13,333 adding 'mitos/prepareFiles.py' 2023-12-27T16:51:13,334 adding 'mitos/removegene.py' 2023-12-27T16:51:13,337 adding 'mitos/skew.py' 2023-12-27T16:51:13,351 adding 'mitos/trna-cm.py' 2023-12-27T16:51:13,355 adding 'mitos/trnadist.py' 2023-12-27T16:51:13,357 adding 'mitos/update-blastdb.py' 2023-12-27T16:51:13,358 adding 'mitos/update-mitolog.py' 2023-12-27T16:51:13,360 adding 'mitos/bedfile/__init__.py' 2023-12-27T16:51:13,366 adding 'mitos/blast/__init__.py' 2023-12-27T16:51:13,368 adding 'mitos/codon/__init__.py' 2023-12-27T16:51:13,370 adding 'mitos/codons/gc.prt' 2023-12-27T16:51:13,372 adding 'mitos/draw/__init__.py' 2023-12-27T16:51:13,374 adding 'mitos/extprog/__init__.py' 2023-12-27T16:51:13,378 adding 'mitos/feature/__init__.py' 2023-12-27T16:51:13,382 adding 'mitos/gb/__init__.py' 2023-12-27T16:51:13,384 adding 'mitos/gb/unify.py' 2023-12-27T16:51:13,386 adding 'mitos/gfffile/__init__.py' 2023-12-27T16:51:13,389 adding 'mitos/mergefeature/__init__.py' 2023-12-27T16:51:13,391 adding 'mitos/mitfi/__init__.py' 2023-12-27T16:51:13,393 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2023-12-27T16:51:13,395 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2023-12-27T16:51:13,398 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2023-12-27T16:51:13,402 adding 'mitos/mitfi/parser/mitfi_import.jar' 2023-12-27T16:51:13,404 adding 'mitos/mito/__init__.py' 2023-12-27T16:51:13,406 adding 'mitos/mitofile/__init__.py' 2023-12-27T16:51:13,407 adding 'mitos/rna/__init__.py' 2023-12-27T16:51:13,408 adding 'mitos/rna/forester.py' 2023-12-27T16:51:13,411 adding 'mitos/rna/vienna.py' 2023-12-27T16:51:13,414 adding 'mitos/sequence/__init__.py' 2023-12-27T16:51:13,415 adding 'mitos/sequence/degenerate.py' 2023-12-27T16:51:13,417 adding 'mitos/tax/__init__.py' 2023-12-27T16:51:13,419 adding 'mitos/tbl/__init__.py' 2023-12-27T16:51:13,421 adding 'mitos/trna/__init__.py' 2023-12-27T16:51:13,423 adding 'mitos/trna/arwenscan.py' 2023-12-27T16:51:13,425 adding 'mitos/trna/trnascan.py' 2023-12-27T16:51:13,427 adding 'mitos/update/__init__.py' 2023-12-27T16:51:13,429 adding 'mitos/util/__init__.py' 2023-12-27T16:51:13,431 adding 'mitos/webserver/DB_index.txt' 2023-12-27T16:51:13,432 adding 'mitos/webserver/DB_search.txt' 2023-12-27T16:51:13,434 adding 'mitos/webserver/__init__.py' 2023-12-27T16:51:13,457 adding 'mitos/webserver/help.txt' 2023-12-27T16:51:13,459 adding 'mitos/webserver/history.txt' 2023-12-27T16:51:13,460 adding 'mitos/webserver/index.txt' 2023-12-27T16:51:13,461 adding 'mitos/webserver/news.txt' 2023-12-27T16:51:13,463 adding 'mitos/webserver/upload.txt' 2023-12-27T16:51:13,464 adding 'mitos/webserver/wait.txt' 2023-12-27T16:51:13,467 adding 'mitos-1.1.2.data/scripts/analyse.py' 2023-12-27T16:51:13,469 adding 'mitos-1.1.2.data/scripts/drawmitos.py' 2023-12-27T16:51:13,470 adding 'mitos-1.1.2.data/scripts/gcpp.py' 2023-12-27T16:51:13,472 adding 'mitos-1.1.2.data/scripts/geneorder.py' 2023-12-27T16:51:13,474 adding 'mitos-1.1.2.data/scripts/getfeatures.py' 2023-12-27T16:51:13,475 adding 'mitos-1.1.2.data/scripts/getinfo.py' 2023-12-27T16:51:13,476 adding 'mitos-1.1.2.data/scripts/plotprot.R' 2023-12-27T16:51:13,478 adding 'mitos-1.1.2.data/scripts/plotrna.R' 2023-12-27T16:51:13,479 adding 'mitos-1.1.2.data/scripts/refseqsplit.py' 2023-12-27T16:51:13,481 adding 'mitos-1.1.2.data/scripts/runmitos.py' 2023-12-27T16:51:13,483 adding 'mitos-1.1.2.data/scripts/subseq.py' 2023-12-27T16:51:13,485 adding 'mitos-1.1.2.data/scripts/taxtree.py' 2023-12-27T16:51:13,487 adding 'mitos-1.1.2.dist-info/LICENSE' 2023-12-27T16:51:13,488 adding 'mitos-1.1.2.dist-info/METADATA' 2023-12-27T16:51:13,489 adding 'mitos-1.1.2.dist-info/WHEEL' 2023-12-27T16:51:13,490 adding 'mitos-1.1.2.dist-info/top_level.txt' 2023-12-27T16:51:13,491 adding 'mitos-1.1.2.dist-info/RECORD' 2023-12-27T16:51:13,496 removing build/bdist.linux-armv7l/wheel 2023-12-27T16:51:13,635 Building wheel for mitos (setup.py): finished with status 'done' 2023-12-27T16:51:13,640 Created wheel for mitos: filename=mitos-1.1.2-py3-none-any.whl size=281660 sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d 2023-12-27T16:51:13,642 Stored in directory: /tmp/pip-ephem-wheel-cache-23v9d2fa/wheels/85/75/a5/fdc07c9753926677ac9e076b4731e80f0dd94781421cf7038a 2023-12-27T16:51:13,654 Successfully built mitos 2023-12-27T16:51:13,668 Removed build tracker: '/tmp/pip-build-tracker-kp63ibl4'