2023-12-28T06:11:40,674 Created temporary directory: /tmp/pip-build-tracker-3spxbxm5 2023-12-28T06:11:40,676 Initialized build tracking at /tmp/pip-build-tracker-3spxbxm5 2023-12-28T06:11:40,676 Created build tracker: /tmp/pip-build-tracker-3spxbxm5 2023-12-28T06:11:40,676 Entered build tracker: /tmp/pip-build-tracker-3spxbxm5 2023-12-28T06:11:40,677 Created temporary directory: /tmp/pip-wheel-7l2lxqjp 2023-12-28T06:11:40,681 Created temporary directory: /tmp/pip-ephem-wheel-cache-7n68743y 2023-12-28T06:11:40,703 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-12-28T06:11:40,706 2 location(s) to search for versions of mitos: 2023-12-28T06:11:40,706 * https://pypi.org/simple/mitos/ 2023-12-28T06:11:40,706 * https://www.piwheels.org/simple/mitos/ 2023-12-28T06:11:40,707 Fetching project page and analyzing links: https://pypi.org/simple/mitos/ 2023-12-28T06:11:40,708 Getting page https://pypi.org/simple/mitos/ 2023-12-28T06:11:40,709 Found index url https://pypi.org/simple/ 2023-12-28T06:11:40,852 Fetched page https://pypi.org/simple/mitos/ as application/vnd.pypi.simple.v1+json 2023-12-28T06:11:40,857 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/ae/2d/5f1e66a046e59cf6088f44d4a02cae66d498e226365af5fd42e2d660a814/mitos-1.0-py2-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-28T06:11:40,858 Found link https://files.pythonhosted.org/packages/c5/6e/e1aae4079b0ebbce64897f54f5cd4a3953a0cb741026d16e14e7ae272a48/mitos-1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0 2023-12-28T06:11:40,858 Found link https://files.pythonhosted.org/packages/d7/19/816780e09ecc6a783f146d80bcde73eb7940d074f4feea137ec954bfd437/mitos-1.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.1 2023-12-28T06:11:40,859 Found link https://files.pythonhosted.org/packages/38/c7/3dd90bcf0d61c69226ef1632baa3ad0e96d798de36053b4b56ed7660dfdb/mitos-1.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.2 2023-12-28T06:11:40,860 Found link https://files.pythonhosted.org/packages/e2/d4/864af2605cc1f45cc78cfed740bbdfba1da59ea9a42c24ef5077c9218501/mitos-1.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.3 2023-12-28T06:11:40,861 Found link https://files.pythonhosted.org/packages/8d/32/1aa5eb88f964c3cf5441622648cc4ae30f115db32bdd5dc5bf194a3c112c/mitos-1.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.4 2023-12-28T06:11:40,861 Found link https://files.pythonhosted.org/packages/ff/49/f4c711126604aa86abeeda44378786a0903bc53970acf4afa5feb68f72b8/mitos-1.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 1.0.5 2023-12-28T06:11:40,862 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/c3/cd/96e0e1ad1551b8fff56ab89e61231809494dec3ee80f51117b4f5d432452/mitos-1.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-28T06:11:40,863 Found link https://files.pythonhosted.org/packages/ce/33/46fd40fd9f4c11f5bf296c2c092f59e36dee233d71a0f032b34c2a64c7ba/mitos-1.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.0 2023-12-28T06:11:40,864 Found link https://files.pythonhosted.org/packages/b3/a0/5268d8fec841240195c19e704b552a8b3060768c6710c67c67350ea60f13/mitos-1.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.1 2023-12-28T06:11:40,864 Found link https://files.pythonhosted.org/packages/7c/38/4431d42c178a65b3710531867f10ae50c5a49408ccab6c058af277e83e5d/mitos-1.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.2 2023-12-28T06:11:40,865 Found link https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 1.1.3 2023-12-28T06:11:40,865 Found link https://files.pythonhosted.org/packages/f3/fa/7e2b9cef0d99e7792077a4c1116dc9bbe4c085e7b89ea79b74474c00b2b1/mitos-2.0.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.1 2023-12-28T06:11:40,866 Found link https://files.pythonhosted.org/packages/d7/53/5d215fe8689055dd329a27202f9dc7f66e23548f3d2ad3fa55d98dc56988/mitos-2.0.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.2 2023-12-28T06:11:40,867 Found link https://files.pythonhosted.org/packages/cd/97/a8bf95d5e26b51071d9f342dc475891425b223b6add347a6dbf9412937f1/mitos-2.0.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.3 2023-12-28T06:11:40,868 Found link https://files.pythonhosted.org/packages/39/9f/6cdac19a8d50915e2e5285b447077459af9c6524f980ded6657dc205593d/mitos-2.0.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.4 2023-12-28T06:11:40,868 Found link https://files.pythonhosted.org/packages/d0/16/8040a37887377e3992b0874ab441af54e16030fd23eb844bbf5293597c99/mitos-2.0.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.5 2023-12-28T06:11:40,869 Found link https://files.pythonhosted.org/packages/40/ef/5a93579c1ebc63ca8fe71cfe541bca389a0f9410b9a2c1ceff148f83af79/mitos-2.0.6.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.6 2023-12-28T06:11:40,869 Found link https://files.pythonhosted.org/packages/1f/a2/32eb96227aae3a719794cc922d839b8c38ee5c315087bf095792c48f996d/mitos-2.0.7.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.7 2023-12-28T06:11:40,870 Found link https://files.pythonhosted.org/packages/d5/7f/b3e5c5c83352beb13677186899379de3c50a2222dc8faac16632f600d4b6/mitos-2.0.8.tar.gz (from https://pypi.org/simple/mitos/), version: 2.0.8 2023-12-28T06:11:40,870 Skipping link: No binaries permitted for mitos: https://files.pythonhosted.org/packages/9d/93/5f2a1097bfa507acbf7dd6ac677f6df14df61692cccb42d28c34edb7ca5b/mitos-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mitos/) 2023-12-28T06:11:40,871 Found link https://files.pythonhosted.org/packages/f8/f4/2950dea175f0bda896b88ac2ac13007a1d007252a583ddd328b176fb54a5/mitos-2.1.0.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.0 2023-12-28T06:11:40,871 Found link https://files.pythonhosted.org/packages/57/78/2fde036a6c767aa5fb8c1102526af749ee13ad426b295289265c548384f9/mitos-2.1.1.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.1 2023-12-28T06:11:40,872 Found link https://files.pythonhosted.org/packages/74/63/f90f359df86c01e68f5c678eef30d929b9311e7bb80f16071a1532515a0a/mitos-2.1.2.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.2 2023-12-28T06:11:40,873 Found link https://files.pythonhosted.org/packages/d6/1f/b6dbc4704555e91e3efa3184fc90b04e901dc6e787c37091d445dd50bd4b/mitos-2.1.3.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.3 2023-12-28T06:11:40,873 Found link https://files.pythonhosted.org/packages/ff/1f/af7beaaaa133f2f55cdbfbf5430c0e9a3102b101dd0a8d2c6f22376af56b/mitos-2.1.4.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.4 2023-12-28T06:11:40,874 Found link https://files.pythonhosted.org/packages/c9/6d/853d05a3ec8c81c73bb23ba0862ded05aa4c2fdc74cdc796c982c6896476/mitos-2.1.5.tar.gz (from https://pypi.org/simple/mitos/), version: 2.1.5 2023-12-28T06:11:40,875 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitos/ 2023-12-28T06:11:40,876 Getting page https://www.piwheels.org/simple/mitos/ 2023-12-28T06:11:40,877 Found index url https://www.piwheels.org/simple/ 2023-12-28T06:11:41,036 Fetched page https://www.piwheels.org/simple/mitos/ as text/html 2023-12-28T06:11:41,042 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.5-py3-none-any.whl#sha256=c404e62da7a2d919a7cf0999ba3ce479541d935e38999ed75c09dc9a38f6b6bd (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,043 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.4-py3-none-any.whl#sha256=249c87e42350fbefa1e3281d0e81f795c7710a95303b226bdc818b51615162e0 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,044 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.3-py3-none-any.whl#sha256=dd19f4a9b02b695465d7d7861d7f611d1c73f231e6205b881d1617cd733bdd87 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,044 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.2-py3-none-any.whl#sha256=c98234624cb7939861858030fbac10b88073159ea24b334b42e1cfd70254088d (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,045 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.1-py3-none-any.whl#sha256=698670abccda0918af0b490888cb195f86172e217766c9672bfedae33666ac82 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,046 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.1.0-py3-none-any.whl#sha256=d4b006045b98620155cbed38de6ecf0d0ffb030cebc4d6e6e947cb015b8ce746 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,046 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.8-py3-none-any.whl#sha256=5e88aa49c5bba746d511e0e619295e3c59916c71ba94246f984e44dcfef6a06c (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,047 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.7-py3-none-any.whl#sha256=97e98856e946735f44b3df83d67645e0dac8b411edb7774df74c00a44832e1d6 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,047 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.6-py3-none-any.whl#sha256=8fba2e7cf9c22c6a728a1f8141764a77a6a4a27d7f7e50106b6e43832857b149 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,047 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.5-py3-none-any.whl#sha256=ed4998969ebae7bf1688b78cdac8f19ca359f123ea79c2acd2654dd454a53f22 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,048 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.4-py3-none-any.whl#sha256=71ac10ffdc0a236d68e4fd82a700ae35a92f0b23a09242c8b99485ccbadb10cc (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,048 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.3-py3-none-any.whl#sha256=4da7d3530901e0732adc63ab4afa0c5d9a40558469b2ccee71ea4fbad466603b (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,049 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.2-py3-none-any.whl#sha256=0cd775b72e2dca4acf2f9c6f4d591abaeb00b983e4882fcf536d934a8263d342 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,050 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-2.0.1-py3-none-any.whl#sha256=307713427f698c0f3449d782d86287f1494fd2ff773a9fc407fbd29a0de53aed (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,050 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.2-py3-none-any.whl#sha256=b237b128b553848c12c5d387b10a20bbcb734b8672b3bf56fb2f3995e169c03d (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,051 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.1-py3-none-any.whl#sha256=f0970e0e530a2a7759daafc81f1c79460dc85d15c1f34551d8394dce187dfe1c (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,051 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.1.0-py3-none-any.whl#sha256=424b5172258baf2837d8a45e89224c12fdc3cc2a8f4ba0894e5c74111e754e5d (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,052 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.5-py3-none-any.whl#sha256=f27a041efc520420cbffbb63a6c428a2ace092d6ffdc47942d6b9c434a281629 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,052 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.4-py3-none-any.whl#sha256=4c35b6595c7a62189502f6becaed4b2fe147f7ed6c6ee8d6b69fb4fda5e2139a (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,053 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.3-py3-none-any.whl#sha256=7b62f2fcef8414d2a429f2f3c033e85c9377805612113e7103fa6793aa083cbc (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,054 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.2-py3-none-any.whl#sha256=ba6a5f7a1d3a0a95106d401e13f7639c5ed2ecb367ab7899e2204b14aa9930a1 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,054 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0.1-py3-none-any.whl#sha256=d216729f10eb3463d947658451c8f70fd97a9b2ca94cea55221f7a50f85749e2 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,055 Skipping link: No binaries permitted for mitos: https://www.piwheels.org/simple/mitos/mitos-1.0-py3-none-any.whl#sha256=4f914c63f700f85163b395353782bcb87e49392f63c151f387dd4514694d0ac1 (from https://www.piwheels.org/simple/mitos/) 2023-12-28T06:11:41,055 Skipping link: not a file: https://www.piwheels.org/simple/mitos/ 2023-12-28T06:11:41,056 Skipping link: not a file: https://pypi.org/simple/mitos/ 2023-12-28T06:11:41,077 Given no hashes to check 1 links for project 'mitos': discarding no candidates 2023-12-28T06:11:41,095 Collecting mitos==1.1.3 2023-12-28T06:11:41,097 Created temporary directory: /tmp/pip-unpack-dqwvtro0 2023-12-28T06:11:41,311 Downloading mitos-1.1.3.tar.gz (245 kB) 2023-12-28T06:11:41,574 Added mitos==1.1.3 from https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-3spxbxm5' 2023-12-28T06:11:41,576 Running setup.py (path:/tmp/pip-wheel-7l2lxqjp/mitos_17226ede98404a2ca9dd0238773f50f0/setup.py) egg_info for package mitos 2023-12-28T06:11:41,577 Created temporary directory: /tmp/pip-pip-egg-info-owh6x8j4 2023-12-28T06:11:41,578 Preparing metadata (setup.py): started 2023-12-28T06:11:41,579 Running command python setup.py egg_info 2023-12-28T06:11:42,577 running egg_info 2023-12-28T06:11:42,578 creating /tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info 2023-12-28T06:11:42,602 writing /tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/PKG-INFO 2023-12-28T06:11:42,605 writing dependency_links to /tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/dependency_links.txt 2023-12-28T06:11:42,607 writing requirements to /tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/requires.txt 2023-12-28T06:11:42,608 writing top-level names to /tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/top_level.txt 2023-12-28T06:11:42,609 writing manifest file '/tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/SOURCES.txt' 2023-12-28T06:11:42,724 reading manifest file '/tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/SOURCES.txt' 2023-12-28T06:11:42,725 reading manifest template 'MANIFEST.in' 2023-12-28T06:11:42,728 adding license file 'LICENSE' 2023-12-28T06:11:42,731 writing manifest file '/tmp/pip-pip-egg-info-owh6x8j4/mitos.egg-info/SOURCES.txt' 2023-12-28T06:11:42,838 Preparing metadata (setup.py): finished with status 'done' 2023-12-28T06:11:42,841 Source in /tmp/pip-wheel-7l2lxqjp/mitos_17226ede98404a2ca9dd0238773f50f0 has version 1.1.3, which satisfies requirement mitos==1.1.3 from https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz 2023-12-28T06:11:42,842 Removed mitos==1.1.3 from https://files.pythonhosted.org/packages/76/40/e0db56e8dfc65a2a13c8f613c4b5839247b918a1cd5d83b384a6c957928e/mitos-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-3spxbxm5' 2023-12-28T06:11:42,847 Created temporary directory: /tmp/pip-unpack-59jxk5uk 2023-12-28T06:11:42,848 Created temporary directory: /tmp/pip-unpack-easmd7jt 2023-12-28T06:11:42,852 Building wheels for collected packages: mitos 2023-12-28T06:11:42,856 Created temporary directory: /tmp/pip-wheel-8kgt38iw 2023-12-28T06:11:42,857 Building wheel for mitos (setup.py): started 2023-12-28T06:11:42,858 Destination directory: /tmp/pip-wheel-8kgt38iw 2023-12-28T06:11:42,859 Running command python setup.py bdist_wheel 2023-12-28T06:11:43,842 running bdist_wheel 2023-12-28T06:11:43,933 running build 2023-12-28T06:11:43,934 running build_py 2023-12-28T06:11:43,960 creating build 2023-12-28T06:11:43,961 creating build/lib 2023-12-28T06:11:43,962 creating build/lib/mitos 2023-12-28T06:11:43,963 copying mitos/mitos-extension.py -> build/lib/mitos 2023-12-28T06:11:43,965 copying mitos/update-mitolog.py -> build/lib/mitos 2023-12-28T06:11:43,968 copying mitos/inihit.py -> build/lib/mitos 2023-12-28T06:11:43,970 copying mitos/convert_tree.py -> build/lib/mitos 2023-12-28T06:11:43,972 copying mitos/prepareFiles.py -> build/lib/mitos 2023-12-28T06:11:43,974 copying mitos/trna-cm.py -> build/lib/mitos 2023-12-28T06:11:43,979 copying mitos/booreparser.py -> build/lib/mitos 2023-12-28T06:11:43,981 copying mitos/skew.py -> build/lib/mitos 2023-12-28T06:11:43,984 copying mitos/mitoch_revisions.py -> build/lib/mitos 2023-12-28T06:11:43,986 copying mitos/__init__.py -> build/lib/mitos 2023-12-28T06:11:43,988 copying mitos/create_prot_fasta.py -> build/lib/mitos 2023-12-28T06:11:43,990 copying mitos/mitos-extension2.py -> build/lib/mitos 2023-12-28T06:11:43,992 copying mitos/ogre-geneorder.py -> build/lib/mitos 2023-12-28T06:11:43,994 copying mitos/CONFIG.py -> build/lib/mitos 2023-12-28T06:11:43,996 copying mitos/trnadist.py -> build/lib/mitos 2023-12-28T06:11:43,998 copying mitos/mitoloc.py -> build/lib/mitos 2023-12-28T06:11:44,000 copying mitos/update-blastdb.py -> build/lib/mitos 2023-12-28T06:11:44,002 copying mitos/removegene.py -> build/lib/mitos 2023-12-28T06:11:44,004 creating build/lib/mitos/tbl 2023-12-28T06:11:44,005 copying mitos/tbl/__init__.py -> build/lib/mitos/tbl 2023-12-28T06:11:44,007 creating build/lib/mitos/blast 2023-12-28T06:11:44,008 copying mitos/blast/__init__.py -> build/lib/mitos/blast 2023-12-28T06:11:44,012 creating build/lib/mitos/rna 2023-12-28T06:11:44,013 copying mitos/rna/vienna.py -> build/lib/mitos/rna 2023-12-28T06:11:44,015 copying mitos/rna/forester.py -> build/lib/mitos/rna 2023-12-28T06:11:44,017 copying mitos/rna/__init__.py -> build/lib/mitos/rna 2023-12-28T06:11:44,019 creating build/lib/mitos/webserver 2023-12-28T06:11:44,020 copying mitos/webserver/__init__.py -> build/lib/mitos/webserver 2023-12-28T06:11:44,023 creating build/lib/mitos/mergefeature 2023-12-28T06:11:44,024 copying mitos/mergefeature/__init__.py -> build/lib/mitos/mergefeature 2023-12-28T06:11:44,027 creating build/lib/mitos/update 2023-12-28T06:11:44,028 copying mitos/update/__init__.py -> build/lib/mitos/update 2023-12-28T06:11:44,031 creating build/lib/mitos/mito 2023-12-28T06:11:44,032 copying mitos/mito/__init__.py -> build/lib/mitos/mito 2023-12-28T06:11:44,034 creating build/lib/mitos/draw 2023-12-28T06:11:44,035 copying mitos/draw/__init__.py -> build/lib/mitos/draw 2023-12-28T06:11:44,038 creating build/lib/mitos/bedfile 2023-12-28T06:11:44,039 copying mitos/bedfile/__init__.py -> build/lib/mitos/bedfile 2023-12-28T06:11:44,041 creating build/lib/mitos/codon 2023-12-28T06:11:44,042 copying mitos/codon/__init__.py -> build/lib/mitos/codon 2023-12-28T06:11:44,044 creating build/lib/mitos/mitofile 2023-12-28T06:11:44,045 copying mitos/mitofile/__init__.py -> build/lib/mitos/mitofile 2023-12-28T06:11:44,047 creating build/lib/mitos/trna 2023-12-28T06:11:44,048 copying mitos/trna/trnascan.py -> build/lib/mitos/trna 2023-12-28T06:11:44,051 copying mitos/trna/__init__.py -> build/lib/mitos/trna 2023-12-28T06:11:44,053 copying mitos/trna/arwenscan.py -> build/lib/mitos/trna 2023-12-28T06:11:44,055 creating build/lib/mitos/gfffile 2023-12-28T06:11:44,056 copying mitos/gfffile/__init__.py -> build/lib/mitos/gfffile 2023-12-28T06:11:44,058 creating build/lib/mitos/gb 2023-12-28T06:11:44,059 copying mitos/gb/__init__.py -> build/lib/mitos/gb 2023-12-28T06:11:44,063 copying mitos/gb/unify.py -> build/lib/mitos/gb 2023-12-28T06:11:44,065 creating build/lib/mitos/extprog 2023-12-28T06:11:44,066 copying mitos/extprog/__init__.py -> build/lib/mitos/extprog 2023-12-28T06:11:44,069 creating build/lib/mitos/feature 2023-12-28T06:11:44,069 copying mitos/feature/__init__.py -> build/lib/mitos/feature 2023-12-28T06:11:44,072 creating build/lib/mitos/mitfi 2023-12-28T06:11:44,073 copying mitos/mitfi/__init__.py -> build/lib/mitos/mitfi 2023-12-28T06:11:44,076 creating build/lib/mitos/sequence 2023-12-28T06:11:44,077 copying mitos/sequence/__init__.py -> build/lib/mitos/sequence 2023-12-28T06:11:44,079 copying mitos/sequence/degenerate.py -> build/lib/mitos/sequence 2023-12-28T06:11:44,081 creating build/lib/mitos/util 2023-12-28T06:11:44,082 copying mitos/util/__init__.py -> build/lib/mitos/util 2023-12-28T06:11:44,084 creating build/lib/mitos/tax 2023-12-28T06:11:44,085 copying mitos/tax/__init__.py -> build/lib/mitos/tax 2023-12-28T06:11:44,086 running egg_info 2023-12-28T06:11:44,140 writing mitos.egg-info/PKG-INFO 2023-12-28T06:11:44,143 writing dependency_links to mitos.egg-info/dependency_links.txt 2023-12-28T06:11:44,144 writing requirements to mitos.egg-info/requires.txt 2023-12-28T06:11:44,145 writing top-level names to mitos.egg-info/top_level.txt 2023-12-28T06:11:44,185 reading manifest file 'mitos.egg-info/SOURCES.txt' 2023-12-28T06:11:44,189 reading manifest template 'MANIFEST.in' 2023-12-28T06:11:44,191 adding license file 'LICENSE' 2023-12-28T06:11:44,195 writing manifest file 'mitos.egg-info/SOURCES.txt' 2023-12-28T06:11:44,198 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.codons' is absent from the `packages` configuration. 2023-12-28T06:11:44,198 !! 2023-12-28T06:11:44,199 ******************************************************************************** 2023-12-28T06:11:44,200 ############################ 2023-12-28T06:11:44,201 # Package would be ignored # 2023-12-28T06:11:44,201 ############################ 2023-12-28T06:11:44,201 Python recognizes 'mitos.codons' as an importable package[^1], 2023-12-28T06:11:44,202 but it is absent from setuptools' `packages` configuration. 2023-12-28T06:11:44,203 This leads to an ambiguous overall configuration. If you want to distribute this 2023-12-28T06:11:44,204 package, please make sure that 'mitos.codons' is explicitly added 2023-12-28T06:11:44,204 to the `packages` configuration field. 2023-12-28T06:11:44,205 Alternatively, you can also rely on setuptools' discovery methods 2023-12-28T06:11:44,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-12-28T06:11:44,207 instead of `find_packages(...)`/`find:`). 2023-12-28T06:11:44,208 You can read more about "package discovery" on setuptools documentation page: 2023-12-28T06:11:44,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-12-28T06:11:44,210 If you don't want 'mitos.codons' to be distributed and are 2023-12-28T06:11:44,210 already explicitly excluding 'mitos.codons' via 2023-12-28T06:11:44,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-12-28T06:11:44,211 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-12-28T06:11:44,212 combination with a more fine grained `package-data` configuration. 2023-12-28T06:11:44,213 You can read more about "package data files" on setuptools documentation page: 2023-12-28T06:11:44,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-12-28T06:11:44,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-12-28T06:11:44,216 even if it does not contain any `.py` files. 2023-12-28T06:11:44,217 On the other hand, currently there is no concept of package data 2023-12-28T06:11:44,217 directory, all directories are treated like packages. 2023-12-28T06:11:44,218 ******************************************************************************** 2023-12-28T06:11:44,219 !! 2023-12-28T06:11:44,219 check.warn(importable) 2023-12-28T06:11:44,220 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'mitos.mitfi.parser' is absent from the `packages` configuration. 2023-12-28T06:11:44,220 !! 2023-12-28T06:11:44,221 ******************************************************************************** 2023-12-28T06:11:44,221 ############################ 2023-12-28T06:11:44,222 # Package would be ignored # 2023-12-28T06:11:44,223 ############################ 2023-12-28T06:11:44,223 Python recognizes 'mitos.mitfi.parser' as an importable package[^1], 2023-12-28T06:11:44,223 but it is absent from setuptools' `packages` configuration. 2023-12-28T06:11:44,224 This leads to an ambiguous overall configuration. If you want to distribute this 2023-12-28T06:11:44,225 package, please make sure that 'mitos.mitfi.parser' is explicitly added 2023-12-28T06:11:44,225 to the `packages` configuration field. 2023-12-28T06:11:44,226 Alternatively, you can also rely on setuptools' discovery methods 2023-12-28T06:11:44,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-12-28T06:11:44,227 instead of `find_packages(...)`/`find:`). 2023-12-28T06:11:44,228 You can read more about "package discovery" on setuptools documentation page: 2023-12-28T06:11:44,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2023-12-28T06:11:44,232 If you don't want 'mitos.mitfi.parser' to be distributed and are 2023-12-28T06:11:44,233 already explicitly excluding 'mitos.mitfi.parser' via 2023-12-28T06:11:44,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2023-12-28T06:11:44,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2023-12-28T06:11:44,234 combination with a more fine grained `package-data` configuration. 2023-12-28T06:11:44,235 You can read more about "package data files" on setuptools documentation page: 2023-12-28T06:11:44,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2023-12-28T06:11:44,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2023-12-28T06:11:44,238 even if it does not contain any `.py` files. 2023-12-28T06:11:44,239 On the other hand, currently there is no concept of package data 2023-12-28T06:11:44,239 directory, all directories are treated like packages. 2023-12-28T06:11:44,240 ******************************************************************************** 2023-12-28T06:11:44,241 !! 2023-12-28T06:11:44,241 check.warn(importable) 2023-12-28T06:11:44,242 copying mitos/plotprot.R -> build/lib/mitos 2023-12-28T06:11:44,242 copying mitos/plotrna.R -> build/lib/mitos 2023-12-28T06:11:44,243 creating build/lib/mitos/codons 2023-12-28T06:11:44,243 copying mitos/codons/gc.prt -> build/lib/mitos/codons 2023-12-28T06:11:44,244 copying mitos/webserver/DB_index.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,244 copying mitos/webserver/DB_search.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,245 copying mitos/webserver/help.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,245 copying mitos/webserver/history.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,246 copying mitos/webserver/index.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,246 copying mitos/webserver/news.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,247 copying mitos/webserver/upload.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,247 copying mitos/webserver/wait.txt -> build/lib/mitos/webserver 2023-12-28T06:11:44,248 creating build/lib/mitos/mitfi/parser 2023-12-28T06:11:44,249 copying mitos/mitfi/parser/improve_infernal_structure.jar -> build/lib/mitos/mitfi/parser 2023-12-28T06:11:44,251 copying mitos/mitfi/parser/mitfiGeneticCodes -> build/lib/mitos/mitfi/parser 2023-12-28T06:11:44,253 copying mitos/mitfi/parser/mitfi_import-1.1.jar -> build/lib/mitos/mitfi/parser 2023-12-28T06:11:44,256 copying mitos/mitfi/parser/mitfi_import.jar -> build/lib/mitos/mitfi/parser 2023-12-28T06:11:44,265 running build_scripts 2023-12-28T06:11:44,266 creating build/scripts-3.11 2023-12-28T06:11:44,267 copying and adjusting runmitos.py -> build/scripts-3.11 2023-12-28T06:11:44,270 copying and adjusting drawmitos.py -> build/scripts-3.11 2023-12-28T06:11:44,271 copying analyse.py -> build/scripts-3.11 2023-12-28T06:11:44,274 copying gcpp.py -> build/scripts-3.11 2023-12-28T06:11:44,277 copying and adjusting geneorder.py -> build/scripts-3.11 2023-12-28T06:11:44,279 copying and adjusting getfeatures.py -> build/scripts-3.11 2023-12-28T06:11:44,281 copying and adjusting getinfo.py -> build/scripts-3.11 2023-12-28T06:11:44,283 copying and adjusting refseqsplit.py -> build/scripts-3.11 2023-12-28T06:11:44,284 copying and adjusting subseq.py -> build/scripts-3.11 2023-12-28T06:11:44,286 copying and adjusting taxtree.py -> build/scripts-3.11 2023-12-28T06:11:44,288 copying mitos/plotprot.R -> build/scripts-3.11 2023-12-28T06:11:44,290 copying mitos/plotrna.R -> build/scripts-3.11 2023-12-28T06:11:44,291 changing mode of build/scripts-3.11/runmitos.py from 644 to 755 2023-12-28T06:11:44,292 changing mode of build/scripts-3.11/drawmitos.py from 644 to 755 2023-12-28T06:11:44,292 changing mode of build/scripts-3.11/analyse.py from 644 to 755 2023-12-28T06:11:44,293 changing mode of build/scripts-3.11/gcpp.py from 644 to 755 2023-12-28T06:11:44,293 changing mode of build/scripts-3.11/geneorder.py from 644 to 755 2023-12-28T06:11:44,294 changing mode of build/scripts-3.11/getfeatures.py from 644 to 755 2023-12-28T06:11:44,294 changing mode of build/scripts-3.11/getinfo.py from 644 to 755 2023-12-28T06:11:44,295 changing mode of build/scripts-3.11/refseqsplit.py from 644 to 755 2023-12-28T06:11:44,296 changing mode of build/scripts-3.11/subseq.py from 644 to 755 2023-12-28T06:11:44,296 changing mode of build/scripts-3.11/taxtree.py from 644 to 755 2023-12-28T06:11:44,319 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2023-12-28T06:11:44,320 !! 2023-12-28T06:11:44,321 ******************************************************************************** 2023-12-28T06:11:44,322 Please avoid running ``setup.py`` directly. 2023-12-28T06:11:44,322 Instead, use pypa/build, pypa/installer or other 2023-12-28T06:11:44,323 standards-based tools. 2023-12-28T06:11:44,324 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2023-12-28T06:11:44,324 ******************************************************************************** 2023-12-28T06:11:44,326 !! 2023-12-28T06:11:44,326 self.initialize_options() 2023-12-28T06:11:44,345 installing to build/bdist.linux-armv7l/wheel 2023-12-28T06:11:44,346 running install 2023-12-28T06:11:44,370 running install_lib 2023-12-28T06:11:44,393 creating build/bdist.linux-armv7l 2023-12-28T06:11:44,394 creating build/bdist.linux-armv7l/wheel 2023-12-28T06:11:44,396 creating build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,397 creating build/bdist.linux-armv7l/wheel/mitos/tbl 2023-12-28T06:11:44,398 copying build/lib/mitos/tbl/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tbl 2023-12-28T06:11:44,401 creating build/bdist.linux-armv7l/wheel/mitos/blast 2023-12-28T06:11:44,402 copying build/lib/mitos/blast/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/blast 2023-12-28T06:11:44,405 copying build/lib/mitos/mitos-extension.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,408 copying build/lib/mitos/update-mitolog.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,410 copying build/lib/mitos/inihit.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,412 copying build/lib/mitos/convert_tree.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,415 creating build/bdist.linux-armv7l/wheel/mitos/codons 2023-12-28T06:11:44,416 copying build/lib/mitos/codons/gc.prt -> build/bdist.linux-armv7l/wheel/mitos/codons 2023-12-28T06:11:44,419 creating build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-28T06:11:44,420 copying build/lib/mitos/rna/vienna.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-28T06:11:44,423 copying build/lib/mitos/rna/forester.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-28T06:11:44,425 copying build/lib/mitos/rna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/rna 2023-12-28T06:11:44,426 copying build/lib/mitos/prepareFiles.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,428 creating build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,429 copying build/lib/mitos/webserver/upload.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,431 copying build/lib/mitos/webserver/help.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,437 copying build/lib/mitos/webserver/news.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,439 copying build/lib/mitos/webserver/index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,442 copying build/lib/mitos/webserver/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,444 copying build/lib/mitos/webserver/DB_index.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,445 copying build/lib/mitos/webserver/history.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,447 copying build/lib/mitos/webserver/DB_search.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,449 copying build/lib/mitos/webserver/wait.txt -> build/bdist.linux-armv7l/wheel/mitos/webserver 2023-12-28T06:11:44,451 creating build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-12-28T06:11:44,452 copying build/lib/mitos/mergefeature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mergefeature 2023-12-28T06:11:44,455 copying build/lib/mitos/trna-cm.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,462 copying build/lib/mitos/booreparser.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,464 creating build/bdist.linux-armv7l/wheel/mitos/update 2023-12-28T06:11:44,465 copying build/lib/mitos/update/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/update 2023-12-28T06:11:44,468 copying build/lib/mitos/skew.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,471 creating build/bdist.linux-armv7l/wheel/mitos/mito 2023-12-28T06:11:44,472 copying build/lib/mitos/mito/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mito 2023-12-28T06:11:44,474 copying build/lib/mitos/mitoch_revisions.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,478 copying build/lib/mitos/__init__.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,480 copying build/lib/mitos/create_prot_fasta.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,482 creating build/bdist.linux-armv7l/wheel/mitos/draw 2023-12-28T06:11:44,483 copying build/lib/mitos/draw/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/draw 2023-12-28T06:11:44,485 copying build/lib/mitos/mitos-extension2.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,488 creating build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-12-28T06:11:44,489 copying build/lib/mitos/bedfile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/bedfile 2023-12-28T06:11:44,491 creating build/bdist.linux-armv7l/wheel/mitos/codon 2023-12-28T06:11:44,492 copying build/lib/mitos/codon/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/codon 2023-12-28T06:11:44,495 creating build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-12-28T06:11:44,496 copying build/lib/mitos/mitofile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitofile 2023-12-28T06:11:44,498 creating build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-28T06:11:44,499 copying build/lib/mitos/trna/trnascan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-28T06:11:44,502 copying build/lib/mitos/trna/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-28T06:11:44,504 copying build/lib/mitos/trna/arwenscan.py -> build/bdist.linux-armv7l/wheel/mitos/trna 2023-12-28T06:11:44,507 creating build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-12-28T06:11:44,508 copying build/lib/mitos/gfffile/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gfffile 2023-12-28T06:11:44,511 creating build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-28T06:11:44,512 copying build/lib/mitos/gb/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-28T06:11:44,515 copying build/lib/mitos/gb/unify.py -> build/bdist.linux-armv7l/wheel/mitos/gb 2023-12-28T06:11:44,518 creating build/bdist.linux-armv7l/wheel/mitos/extprog 2023-12-28T06:11:44,519 copying build/lib/mitos/extprog/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/extprog 2023-12-28T06:11:44,521 copying build/lib/mitos/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,523 creating build/bdist.linux-armv7l/wheel/mitos/feature 2023-12-28T06:11:44,524 copying build/lib/mitos/feature/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/feature 2023-12-28T06:11:44,526 copying build/lib/mitos/ogre-geneorder.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,528 copying build/lib/mitos/CONFIG.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,530 copying build/lib/mitos/trnadist.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,533 creating build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-12-28T06:11:44,534 copying build/lib/mitos/mitfi/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/mitfi 2023-12-28T06:11:44,537 creating build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-28T06:11:44,538 copying build/lib/mitos/mitfi/parser/mitfi_import-1.1.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-28T06:11:44,541 copying build/lib/mitos/mitfi/parser/mitfiGeneticCodes -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-28T06:11:44,543 copying build/lib/mitos/mitfi/parser/improve_infernal_structure.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-28T06:11:44,546 copying build/lib/mitos/mitfi/parser/mitfi_import.jar -> build/bdist.linux-armv7l/wheel/mitos/mitfi/parser 2023-12-28T06:11:44,549 creating build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-28T06:11:44,550 copying build/lib/mitos/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-28T06:11:44,553 copying build/lib/mitos/sequence/degenerate.py -> build/bdist.linux-armv7l/wheel/mitos/sequence 2023-12-28T06:11:44,555 creating build/bdist.linux-armv7l/wheel/mitos/util 2023-12-28T06:11:44,556 copying build/lib/mitos/util/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/util 2023-12-28T06:11:44,558 copying build/lib/mitos/mitoloc.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,560 copying build/lib/mitos/update-blastdb.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,561 copying build/lib/mitos/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,563 copying build/lib/mitos/removegene.py -> build/bdist.linux-armv7l/wheel/mitos 2023-12-28T06:11:44,565 creating build/bdist.linux-armv7l/wheel/mitos/tax 2023-12-28T06:11:44,566 copying build/lib/mitos/tax/__init__.py -> build/bdist.linux-armv7l/wheel/mitos/tax 2023-12-28T06:11:44,568 running install_egg_info 2023-12-28T06:11:44,597 Copying mitos.egg-info to build/bdist.linux-armv7l/wheel/mitos-1.1.3-py3.11.egg-info 2023-12-28T06:11:44,606 running install_scripts 2023-12-28T06:11:44,608 creating build/bdist.linux-armv7l/wheel/mitos-1.1.3.data 2023-12-28T06:11:44,609 creating build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,609 copying build/scripts-3.11/refseqsplit.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,611 copying build/scripts-3.11/analyse.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,614 copying build/scripts-3.11/runmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,616 copying build/scripts-3.11/taxtree.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,618 copying build/scripts-3.11/gcpp.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,620 copying build/scripts-3.11/getfeatures.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,622 copying build/scripts-3.11/getinfo.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,624 copying build/scripts-3.11/plotprot.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,626 copying build/scripts-3.11/drawmitos.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,627 copying build/scripts-3.11/subseq.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,629 copying build/scripts-3.11/plotrna.R -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,631 copying build/scripts-3.11/geneorder.py -> build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts 2023-12-28T06:11:44,633 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/refseqsplit.py to 755 2023-12-28T06:11:44,634 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/analyse.py to 755 2023-12-28T06:11:44,635 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/runmitos.py to 755 2023-12-28T06:11:44,635 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/taxtree.py to 755 2023-12-28T06:11:44,636 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/gcpp.py to 755 2023-12-28T06:11:44,636 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/getfeatures.py to 755 2023-12-28T06:11:44,637 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/getinfo.py to 755 2023-12-28T06:11:44,637 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/plotprot.R to 755 2023-12-28T06:11:44,638 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/drawmitos.py to 755 2023-12-28T06:11:44,638 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/subseq.py to 755 2023-12-28T06:11:44,639 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/plotrna.R to 755 2023-12-28T06:11:44,640 changing mode of build/bdist.linux-armv7l/wheel/mitos-1.1.3.data/scripts/geneorder.py to 755 2023-12-28T06:11:44,650 creating build/bdist.linux-armv7l/wheel/mitos-1.1.3.dist-info/WHEEL 2023-12-28T06:11:44,652 creating '/tmp/pip-wheel-8kgt38iw/mitos-1.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-12-28T06:11:44,655 adding 'mitos/CONFIG.py' 2023-12-28T06:11:44,656 adding 'mitos/__init__.py' 2023-12-28T06:11:44,658 adding 'mitos/booreparser.py' 2023-12-28T06:11:44,662 adding 'mitos/convert_tree.py' 2023-12-28T06:11:44,664 adding 'mitos/create_prot_fasta.py' 2023-12-28T06:11:44,666 adding 'mitos/inihit.py' 2023-12-28T06:11:44,671 adding 'mitos/mitoch_revisions.py' 2023-12-28T06:11:44,673 adding 'mitos/mitoloc.py' 2023-12-28T06:11:44,676 adding 'mitos/mitos-extension.py' 2023-12-28T06:11:44,678 adding 'mitos/mitos-extension2.py' 2023-12-28T06:11:44,680 adding 'mitos/ogre-geneorder.py' 2023-12-28T06:11:44,681 adding 'mitos/plotprot.R' 2023-12-28T06:11:44,683 adding 'mitos/plotrna.R' 2023-12-28T06:11:44,684 adding 'mitos/prepareFiles.py' 2023-12-28T06:11:44,686 adding 'mitos/removegene.py' 2023-12-28T06:11:44,688 adding 'mitos/skew.py' 2023-12-28T06:11:44,703 adding 'mitos/trna-cm.py' 2023-12-28T06:11:44,707 adding 'mitos/trnadist.py' 2023-12-28T06:11:44,708 adding 'mitos/update-blastdb.py' 2023-12-28T06:11:44,709 adding 'mitos/update-mitolog.py' 2023-12-28T06:11:44,711 adding 'mitos/bedfile/__init__.py' 2023-12-28T06:11:44,717 adding 'mitos/blast/__init__.py' 2023-12-28T06:11:44,719 adding 'mitos/codon/__init__.py' 2023-12-28T06:11:44,721 adding 'mitos/codons/gc.prt' 2023-12-28T06:11:44,723 adding 'mitos/draw/__init__.py' 2023-12-28T06:11:44,724 adding 'mitos/extprog/__init__.py' 2023-12-28T06:11:44,728 adding 'mitos/feature/__init__.py' 2023-12-28T06:11:44,733 adding 'mitos/gb/__init__.py' 2023-12-28T06:11:44,735 adding 'mitos/gb/unify.py' 2023-12-28T06:11:44,736 adding 'mitos/gfffile/__init__.py' 2023-12-28T06:11:44,740 adding 'mitos/mergefeature/__init__.py' 2023-12-28T06:11:44,742 adding 'mitos/mitfi/__init__.py' 2023-12-28T06:11:44,744 adding 'mitos/mitfi/parser/improve_infernal_structure.jar' 2023-12-28T06:11:44,746 adding 'mitos/mitfi/parser/mitfiGeneticCodes' 2023-12-28T06:11:44,749 adding 'mitos/mitfi/parser/mitfi_import-1.1.jar' 2023-12-28T06:11:44,753 adding 'mitos/mitfi/parser/mitfi_import.jar' 2023-12-28T06:11:44,755 adding 'mitos/mito/__init__.py' 2023-12-28T06:11:44,757 adding 'mitos/mitofile/__init__.py' 2023-12-28T06:11:44,758 adding 'mitos/rna/__init__.py' 2023-12-28T06:11:44,760 adding 'mitos/rna/forester.py' 2023-12-28T06:11:44,762 adding 'mitos/rna/vienna.py' 2023-12-28T06:11:44,765 adding 'mitos/sequence/__init__.py' 2023-12-28T06:11:44,766 adding 'mitos/sequence/degenerate.py' 2023-12-28T06:11:44,768 adding 'mitos/tax/__init__.py' 2023-12-28T06:11:44,770 adding 'mitos/tbl/__init__.py' 2023-12-28T06:11:44,772 adding 'mitos/trna/__init__.py' 2023-12-28T06:11:44,774 adding 'mitos/trna/arwenscan.py' 2023-12-28T06:11:44,776 adding 'mitos/trna/trnascan.py' 2023-12-28T06:11:44,779 adding 'mitos/update/__init__.py' 2023-12-28T06:11:44,780 adding 'mitos/util/__init__.py' 2023-12-28T06:11:44,782 adding 'mitos/webserver/DB_index.txt' 2023-12-28T06:11:44,784 adding 'mitos/webserver/DB_search.txt' 2023-12-28T06:11:44,785 adding 'mitos/webserver/__init__.py' 2023-12-28T06:11:44,808 adding 'mitos/webserver/help.txt' 2023-12-28T06:11:44,811 adding 'mitos/webserver/history.txt' 2023-12-28T06:11:44,812 adding 'mitos/webserver/index.txt' 2023-12-28T06:11:44,814 adding 'mitos/webserver/news.txt' 2023-12-28T06:11:44,815 adding 'mitos/webserver/upload.txt' 2023-12-28T06:11:44,816 adding 'mitos/webserver/wait.txt' 2023-12-28T06:11:44,819 adding 'mitos-1.1.3.data/scripts/analyse.py' 2023-12-28T06:11:44,821 adding 'mitos-1.1.3.data/scripts/drawmitos.py' 2023-12-28T06:11:44,822 adding 'mitos-1.1.3.data/scripts/gcpp.py' 2023-12-28T06:11:44,825 adding 'mitos-1.1.3.data/scripts/geneorder.py' 2023-12-28T06:11:44,826 adding 'mitos-1.1.3.data/scripts/getfeatures.py' 2023-12-28T06:11:44,828 adding 'mitos-1.1.3.data/scripts/getinfo.py' 2023-12-28T06:11:44,829 adding 'mitos-1.1.3.data/scripts/plotprot.R' 2023-12-28T06:11:44,830 adding 'mitos-1.1.3.data/scripts/plotrna.R' 2023-12-28T06:11:44,832 adding 'mitos-1.1.3.data/scripts/refseqsplit.py' 2023-12-28T06:11:44,834 adding 'mitos-1.1.3.data/scripts/runmitos.py' 2023-12-28T06:11:44,836 adding 'mitos-1.1.3.data/scripts/subseq.py' 2023-12-28T06:11:44,837 adding 'mitos-1.1.3.data/scripts/taxtree.py' 2023-12-28T06:11:44,839 adding 'mitos-1.1.3.dist-info/LICENSE' 2023-12-28T06:11:44,841 adding 'mitos-1.1.3.dist-info/METADATA' 2023-12-28T06:11:44,842 adding 'mitos-1.1.3.dist-info/WHEEL' 2023-12-28T06:11:44,842 adding 'mitos-1.1.3.dist-info/top_level.txt' 2023-12-28T06:11:44,844 adding 'mitos-1.1.3.dist-info/RECORD' 2023-12-28T06:11:44,849 removing build/bdist.linux-armv7l/wheel 2023-12-28T06:11:44,984 Building wheel for mitos (setup.py): finished with status 'done' 2023-12-28T06:11:44,989 Created wheel for mitos: filename=mitos-1.1.3-py3-none-any.whl size=280815 sha256=92bec0ea93c83f4d494767e69401c1dcc1dd8f562917c3d110ec0a525d142a6a 2023-12-28T06:11:44,990 Stored in directory: /tmp/pip-ephem-wheel-cache-7n68743y/wheels/b0/62/91/021d033c6ef5e66b260a89062b12ad3a77b81dccc4f2f17d47 2023-12-28T06:11:45,003 Successfully built mitos 2023-12-28T06:11:45,014 Removed build tracker: '/tmp/pip-build-tracker-3spxbxm5'