2024-01-04T04:11:43,283 Created temporary directory: /tmp/pip-build-tracker-bv9jdok_ 2024-01-04T04:11:43,285 Initialized build tracking at /tmp/pip-build-tracker-bv9jdok_ 2024-01-04T04:11:43,285 Created build tracker: /tmp/pip-build-tracker-bv9jdok_ 2024-01-04T04:11:43,286 Entered build tracker: /tmp/pip-build-tracker-bv9jdok_ 2024-01-04T04:11:43,287 Created temporary directory: /tmp/pip-wheel-9es40lrl 2024-01-04T04:11:43,290 Created temporary directory: /tmp/pip-ephem-wheel-cache-_i1d0s8x 2024-01-04T04:11:43,315 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-04T04:11:43,318 2 location(s) to search for versions of lifton: 2024-01-04T04:11:43,318 * https://pypi.org/simple/lifton/ 2024-01-04T04:11:43,318 * https://www.piwheels.org/simple/lifton/ 2024-01-04T04:11:43,319 Fetching project page and analyzing links: https://pypi.org/simple/lifton/ 2024-01-04T04:11:43,320 Getting page https://pypi.org/simple/lifton/ 2024-01-04T04:11:43,321 Found index url https://pypi.org/simple/ 2024-01-04T04:11:43,587 Fetched page https://pypi.org/simple/lifton/ as application/vnd.pypi.simple.v1+json 2024-01-04T04:11:43,589 Skipping link: No binaries permitted for lifton: https://files.pythonhosted.org/packages/bb/6f/16db3cb001a27f878d0f0780d46ac46a080d5c4114119eed9e1087c33d18/lifton-0.0.1-py3-none-any.whl (from https://pypi.org/simple/lifton/) (requires-python:>=3.6) 2024-01-04T04:11:43,591 Found link https://files.pythonhosted.org/packages/13/2e/e8107811b9073a71d88b2a093509643eac35df4d083e4310baeff4767888/lifton-0.0.1.tar.gz (from https://pypi.org/simple/lifton/) (requires-python:>=3.6), version: 0.0.1 2024-01-04T04:11:43,593 Fetching project page and analyzing links: https://www.piwheels.org/simple/lifton/ 2024-01-04T04:11:43,594 Getting page https://www.piwheels.org/simple/lifton/ 2024-01-04T04:11:43,597 Found index url https://www.piwheels.org/simple/ 2024-01-04T04:11:43,811 Fetched page https://www.piwheels.org/simple/lifton/ as text/html 2024-01-04T04:11:43,812 Skipping link: not a file: https://www.piwheels.org/simple/lifton/ 2024-01-04T04:11:43,813 Skipping link: not a file: https://pypi.org/simple/lifton/ 2024-01-04T04:11:43,833 Given no hashes to check 1 links for project 'lifton': discarding no candidates 2024-01-04T04:11:43,853 Collecting lifton==0.0.1 2024-01-04T04:11:43,856 Created temporary directory: /tmp/pip-unpack-9e036t44 2024-01-04T04:11:44,062 Downloading lifton-0.0.1.tar.gz (56 kB) 2024-01-04T04:11:44,199 Added lifton==0.0.1 from https://files.pythonhosted.org/packages/13/2e/e8107811b9073a71d88b2a093509643eac35df4d083e4310baeff4767888/lifton-0.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-bv9jdok_' 2024-01-04T04:11:44,200 Running setup.py (path:/tmp/pip-wheel-9es40lrl/lifton_4d0a5d55331a49b6a7e61e32d0da1854/setup.py) egg_info for package lifton 2024-01-04T04:11:44,202 Created temporary directory: /tmp/pip-pip-egg-info-um3fjg0_ 2024-01-04T04:11:44,202 Preparing metadata (setup.py): started 2024-01-04T04:11:44,204 Running command python setup.py egg_info 2024-01-04T04:11:45,039 running egg_info 2024-01-04T04:11:45,040 creating /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info 2024-01-04T04:11:45,066 writing /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/PKG-INFO 2024-01-04T04:11:45,070 writing dependency_links to /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/dependency_links.txt 2024-01-04T04:11:45,071 writing entry points to /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/entry_points.txt 2024-01-04T04:11:45,073 writing requirements to /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/requires.txt 2024-01-04T04:11:45,074 writing top-level names to /tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/top_level.txt 2024-01-04T04:11:45,075 writing manifest file '/tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/SOURCES.txt' 2024-01-04T04:11:45,158 reading manifest file '/tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/SOURCES.txt' 2024-01-04T04:11:45,160 adding license file 'LICENSE' 2024-01-04T04:11:45,162 writing manifest file '/tmp/pip-pip-egg-info-um3fjg0_/lifton.egg-info/SOURCES.txt' 2024-01-04T04:11:45,261 Preparing metadata (setup.py): finished with status 'done' 2024-01-04T04:11:45,265 Source in /tmp/pip-wheel-9es40lrl/lifton_4d0a5d55331a49b6a7e61e32d0da1854 has version 0.0.1, which satisfies requirement lifton==0.0.1 from https://files.pythonhosted.org/packages/13/2e/e8107811b9073a71d88b2a093509643eac35df4d083e4310baeff4767888/lifton-0.0.1.tar.gz 2024-01-04T04:11:45,266 Removed lifton==0.0.1 from https://files.pythonhosted.org/packages/13/2e/e8107811b9073a71d88b2a093509643eac35df4d083e4310baeff4767888/lifton-0.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-bv9jdok_' 2024-01-04T04:11:45,272 Created temporary directory: /tmp/pip-unpack-gpylvg5u 2024-01-04T04:11:45,273 Created temporary directory: /tmp/pip-unpack-tt37d5ji 2024-01-04T04:11:45,281 Building wheels for collected packages: lifton 2024-01-04T04:11:45,285 Created temporary directory: /tmp/pip-wheel-_izxj5kj 2024-01-04T04:11:45,286 Building wheel for lifton (setup.py): started 2024-01-04T04:11:45,287 Destination directory: /tmp/pip-wheel-_izxj5kj 2024-01-04T04:11:45,287 Running command python setup.py bdist_wheel 2024-01-04T04:11:46,099 running bdist_wheel 2024-01-04T04:11:46,233 running build 2024-01-04T04:11:46,234 running build_py 2024-01-04T04:11:46,262 creating build 2024-01-04T04:11:46,263 creating build/lib 2024-01-04T04:11:46,264 creating build/lib/lifton 2024-01-04T04:11:46,265 copying lifton/run_miniprot.py -> build/lib/lifton 2024-01-04T04:11:46,267 copying lifton/stats.py -> build/lib/lifton 2024-01-04T04:11:46,269 copying lifton/align.py -> build/lib/lifton 2024-01-04T04:11:46,271 copying lifton/lifton_utils.py -> build/lib/lifton 2024-01-04T04:11:46,274 copying lifton/__init__.py -> build/lib/lifton 2024-01-04T04:11:46,275 copying lifton/fix_trans_annotation.py -> build/lib/lifton 2024-01-04T04:11:46,277 copying lifton/mapping.py -> build/lib/lifton 2024-01-04T04:11:46,280 copying lifton/lifton.py -> build/lib/lifton 2024-01-04T04:11:46,282 copying lifton/run_liftoff.py -> build/lib/lifton 2024-01-04T04:11:46,284 copying lifton/extract_sequence.py -> build/lib/lifton 2024-01-04T04:11:46,286 copying lifton/lifton_class.py -> build/lib/lifton 2024-01-04T04:11:46,289 copying lifton/lifton_class_eval.py -> build/lib/lifton 2024-01-04T04:11:46,292 copying lifton/evaluation.py -> build/lib/lifton 2024-01-04T04:11:46,294 copying lifton/logger.py -> build/lib/lifton 2024-01-04T04:11:46,295 copying lifton/get_id_fraction.py -> build/lib/lifton 2024-01-04T04:11:46,297 copying lifton/annotation.py -> build/lib/lifton 2024-01-04T04:11:46,299 copying lifton/lifton_entry.py -> build/lib/lifton 2024-01-04T04:11:46,301 copying lifton/variants.py -> build/lib/lifton 2024-01-04T04:11:46,303 copying lifton/intervals.py -> build/lib/lifton 2024-01-04T04:11:46,306 creating build/lib/lifton/liftoff 2024-01-04T04:11:46,307 copying lifton/liftoff/fix_overlapping_features.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,309 copying lifton/liftoff/new_feature.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,311 copying lifton/liftoff/polish.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,313 copying lifton/liftoff/__init__.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,314 copying lifton/liftoff/extract_features.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,316 copying lifton/liftoff/liftoff_main.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,319 copying lifton/liftoff/aligned_seg.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,321 copying lifton/liftoff/feature_hierarchy.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,323 copying lifton/liftoff/align_features.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,325 copying lifton/liftoff/lift_features.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,327 copying lifton/liftoff/write_new_gff.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,329 copying lifton/liftoff/liftoff_utils.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,331 copying lifton/liftoff/merge_lifted_features.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,333 copying lifton/liftoff/find_best_mapping.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,335 copying lifton/liftoff/liftover_types.py -> build/lib/lifton/liftoff 2024-01-04T04:11:46,338 creating build/lib/lifton/liftoff/tests 2024-01-04T04:11:46,339 copying lifton/liftoff/tests/__init__.py -> build/lib/lifton/liftoff/tests 2024-01-04T04:11:46,340 copying lifton/liftoff/tests/test_advanced.py -> build/lib/lifton/liftoff/tests 2024-01-04T04:11:46,342 copying lifton/liftoff/tests/test_basic.py -> build/lib/lifton/liftoff/tests 2024-01-04T04:11:46,375 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-04T04:11:46,375 !! 2024-01-04T04:11:46,376 ******************************************************************************** 2024-01-04T04:11:46,377 Please avoid running ``setup.py`` directly. 2024-01-04T04:11:46,377 Instead, use pypa/build, pypa/installer or other 2024-01-04T04:11:46,377 standards-based tools. 2024-01-04T04:11:46,379 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-04T04:11:46,379 ******************************************************************************** 2024-01-04T04:11:46,380 !! 2024-01-04T04:11:46,381 self.initialize_options() 2024-01-04T04:11:46,401 installing to build/bdist.linux-armv7l/wheel 2024-01-04T04:11:46,402 running install 2024-01-04T04:11:46,425 running install_lib 2024-01-04T04:11:46,452 creating build/bdist.linux-armv7l 2024-01-04T04:11:46,453 creating build/bdist.linux-armv7l/wheel 2024-01-04T04:11:46,454 creating build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,456 copying build/lib/lifton/run_miniprot.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,458 copying build/lib/lifton/stats.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,460 copying build/lib/lifton/align.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,463 copying build/lib/lifton/lifton_utils.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,465 copying build/lib/lifton/__init__.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,467 copying build/lib/lifton/fix_trans_annotation.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,469 copying build/lib/lifton/mapping.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,471 copying build/lib/lifton/lifton.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,474 creating build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,475 copying build/lib/lifton/liftoff/fix_overlapping_features.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,477 copying build/lib/lifton/liftoff/new_feature.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,479 copying build/lib/lifton/liftoff/polish.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,482 copying build/lib/lifton/liftoff/__init__.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,483 copying build/lib/lifton/liftoff/extract_features.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,486 copying build/lib/lifton/liftoff/liftoff_main.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,488 creating build/bdist.linux-armv7l/wheel/lifton/liftoff/tests 2024-01-04T04:11:46,489 copying build/lib/lifton/liftoff/tests/__init__.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff/tests 2024-01-04T04:11:46,491 copying build/lib/lifton/liftoff/tests/test_advanced.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff/tests 2024-01-04T04:11:46,493 copying build/lib/lifton/liftoff/tests/test_basic.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff/tests 2024-01-04T04:11:46,495 copying build/lib/lifton/liftoff/aligned_seg.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,497 copying build/lib/lifton/liftoff/feature_hierarchy.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,499 copying build/lib/lifton/liftoff/align_features.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,501 copying build/lib/lifton/liftoff/lift_features.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,503 copying build/lib/lifton/liftoff/write_new_gff.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,505 copying build/lib/lifton/liftoff/liftoff_utils.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,508 copying build/lib/lifton/liftoff/merge_lifted_features.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,509 copying build/lib/lifton/liftoff/find_best_mapping.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,512 copying build/lib/lifton/liftoff/liftover_types.py -> build/bdist.linux-armv7l/wheel/lifton/liftoff 2024-01-04T04:11:46,514 copying build/lib/lifton/run_liftoff.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,516 copying build/lib/lifton/extract_sequence.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,518 copying build/lib/lifton/lifton_class.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,520 copying build/lib/lifton/lifton_class_eval.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,523 copying build/lib/lifton/evaluation.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,525 copying build/lib/lifton/logger.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,527 copying build/lib/lifton/get_id_fraction.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,528 copying build/lib/lifton/annotation.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,531 copying build/lib/lifton/lifton_entry.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,532 copying build/lib/lifton/variants.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,534 copying build/lib/lifton/intervals.py -> build/bdist.linux-armv7l/wheel/lifton 2024-01-04T04:11:46,536 running install_egg_info 2024-01-04T04:11:46,567 running egg_info 2024-01-04T04:11:46,592 writing lifton.egg-info/PKG-INFO 2024-01-04T04:11:46,596 writing dependency_links to lifton.egg-info/dependency_links.txt 2024-01-04T04:11:46,597 writing entry points to lifton.egg-info/entry_points.txt 2024-01-04T04:11:46,599 writing requirements to lifton.egg-info/requires.txt 2024-01-04T04:11:46,600 writing top-level names to lifton.egg-info/top_level.txt 2024-01-04T04:11:46,633 reading manifest file 'lifton.egg-info/SOURCES.txt' 2024-01-04T04:11:46,636 adding license file 'LICENSE' 2024-01-04T04:11:46,640 writing manifest file 'lifton.egg-info/SOURCES.txt' 2024-01-04T04:11:46,641 Copying lifton.egg-info to build/bdist.linux-armv7l/wheel/lifton-0.0.1-py3.11.egg-info 2024-01-04T04:11:46,654 running install_scripts 2024-01-04T04:11:46,670 creating build/bdist.linux-armv7l/wheel/lifton-0.0.1.dist-info/WHEEL 2024-01-04T04:11:46,673 creating '/tmp/pip-wheel-_izxj5kj/lifton-0.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-04T04:11:46,676 adding 'lifton/__init__.py' 2024-01-04T04:11:46,677 adding 'lifton/align.py' 2024-01-04T04:11:46,679 adding 'lifton/annotation.py' 2024-01-04T04:11:46,681 adding 'lifton/evaluation.py' 2024-01-04T04:11:46,683 adding 'lifton/extract_sequence.py' 2024-01-04T04:11:46,685 adding 'lifton/fix_trans_annotation.py' 2024-01-04T04:11:46,687 adding 'lifton/get_id_fraction.py' 2024-01-04T04:11:46,688 adding 'lifton/intervals.py' 2024-01-04T04:11:46,692 adding 'lifton/lifton.py' 2024-01-04T04:11:46,697 adding 'lifton/lifton_class.py' 2024-01-04T04:11:46,700 adding 'lifton/lifton_class_eval.py' 2024-01-04T04:11:46,701 adding 'lifton/lifton_entry.py' 2024-01-04T04:11:46,703 adding 'lifton/lifton_utils.py' 2024-01-04T04:11:46,704 adding 'lifton/logger.py' 2024-01-04T04:11:46,706 adding 'lifton/mapping.py' 2024-01-04T04:11:46,707 adding 'lifton/run_liftoff.py' 2024-01-04T04:11:46,709 adding 'lifton/run_miniprot.py' 2024-01-04T04:11:46,710 adding 'lifton/stats.py' 2024-01-04T04:11:46,712 adding 'lifton/variants.py' 2024-01-04T04:11:46,714 adding 'lifton/liftoff/__init__.py' 2024-01-04T04:11:46,716 adding 'lifton/liftoff/align_features.py' 2024-01-04T04:11:46,717 adding 'lifton/liftoff/aligned_seg.py' 2024-01-04T04:11:46,718 adding 'lifton/liftoff/extract_features.py' 2024-01-04T04:11:46,720 adding 'lifton/liftoff/feature_hierarchy.py' 2024-01-04T04:11:46,722 adding 'lifton/liftoff/find_best_mapping.py' 2024-01-04T04:11:46,723 adding 'lifton/liftoff/fix_overlapping_features.py' 2024-01-04T04:11:46,725 adding 'lifton/liftoff/lift_features.py' 2024-01-04T04:11:46,727 adding 'lifton/liftoff/liftoff_main.py' 2024-01-04T04:11:46,729 adding 'lifton/liftoff/liftoff_utils.py' 2024-01-04T04:11:46,730 adding 'lifton/liftoff/liftover_types.py' 2024-01-04T04:11:46,731 adding 'lifton/liftoff/merge_lifted_features.py' 2024-01-04T04:11:46,733 adding 'lifton/liftoff/new_feature.py' 2024-01-04T04:11:46,735 adding 'lifton/liftoff/polish.py' 2024-01-04T04:11:46,736 adding 'lifton/liftoff/write_new_gff.py' 2024-01-04T04:11:46,738 adding 'lifton/liftoff/tests/__init__.py' 2024-01-04T04:11:46,739 adding 'lifton/liftoff/tests/test_advanced.py' 2024-01-04T04:11:46,741 adding 'lifton/liftoff/tests/test_basic.py' 2024-01-04T04:11:46,743 adding 'lifton-0.0.1.dist-info/LICENSE' 2024-01-04T04:11:46,744 adding 'lifton-0.0.1.dist-info/METADATA' 2024-01-04T04:11:46,745 adding 'lifton-0.0.1.dist-info/WHEEL' 2024-01-04T04:11:46,746 adding 'lifton-0.0.1.dist-info/entry_points.txt' 2024-01-04T04:11:46,747 adding 'lifton-0.0.1.dist-info/top_level.txt' 2024-01-04T04:11:46,748 adding 'lifton-0.0.1.dist-info/RECORD' 2024-01-04T04:11:46,750 removing build/bdist.linux-armv7l/wheel 2024-01-04T04:11:46,861 Building wheel for lifton (setup.py): finished with status 'done' 2024-01-04T04:11:46,864 Created wheel for lifton: filename=lifton-0.0.1-py3-none-any.whl size=68092 sha256=a98808f9baa1174b52883629fe95d038b30e3bea493f18a55af481cdc670d536 2024-01-04T04:11:46,866 Stored in directory: /tmp/pip-ephem-wheel-cache-_i1d0s8x/wheels/84/b0/2e/2187fe17cb3ff4453587358b1936c3cf3da351b03df9c465fe 2024-01-04T04:11:46,877 Successfully built lifton 2024-01-04T04:11:46,882 Removed build tracker: '/tmp/pip-build-tracker-bv9jdok_'