2024-01-04T11:24:15,336 Created temporary directory: /tmp/pip-build-tracker-c4kj3tau 2024-01-04T11:24:15,338 Initialized build tracking at /tmp/pip-build-tracker-c4kj3tau 2024-01-04T11:24:15,338 Created build tracker: /tmp/pip-build-tracker-c4kj3tau 2024-01-04T11:24:15,338 Entered build tracker: /tmp/pip-build-tracker-c4kj3tau 2024-01-04T11:24:15,339 Created temporary directory: /tmp/pip-wheel-j1ruxdfq 2024-01-04T11:24:15,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-ywt9nk70 2024-01-04T11:24:15,366 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-04T11:24:15,370 2 location(s) to search for versions of pybiotk: 2024-01-04T11:24:15,370 * https://pypi.org/simple/pybiotk/ 2024-01-04T11:24:15,370 * https://www.piwheels.org/simple/pybiotk/ 2024-01-04T11:24:15,371 Fetching project page and analyzing links: https://pypi.org/simple/pybiotk/ 2024-01-04T11:24:15,371 Getting page https://pypi.org/simple/pybiotk/ 2024-01-04T11:24:15,372 Found index url https://pypi.org/simple/ 2024-01-04T11:24:15,423 Fetched page https://pypi.org/simple/pybiotk/ as application/vnd.pypi.simple.v1+json 2024-01-04T11:24:15,426 Found link https://files.pythonhosted.org/packages/36/39/63bca353f534b61d1b4d184594aa908e15c1ed647e1e722bfcf9ee064dbc/pybiotk-1.0.3.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.3 2024-01-04T11:24:15,427 Found link https://files.pythonhosted.org/packages/c2/63/fd2b3ca946c51dc23242f873ba230b22d55298bd2eb2df0fe06a648e6849/pybiotk-1.0.4.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.4 2024-01-04T11:24:15,427 Found link https://files.pythonhosted.org/packages/67/96/a92ce5cf084e83cb215b8d8e9656d5bcfe22ae834956bd208e796b50da16/pybiotk-1.0.6.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.6 2024-01-04T11:24:15,427 Found link https://files.pythonhosted.org/packages/be/b5/ff3128b3a5181f7169f2fb8072ae82e4589c45e3c08c3964fc77b897a8cf/pybiotk-1.0.7.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.7 2024-01-04T11:24:15,428 Found link https://files.pythonhosted.org/packages/b7/60/f27ad0c199d09158de9f172415057312c69a824f3589e43787ea24925448/pybiotk-1.0.8.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.8 2024-01-04T11:24:15,428 Found link https://files.pythonhosted.org/packages/fb/74/d26be594d8fc95a6bf87a98c26341ec248f2bb6fe50fa7a78419c8a152d9/pybiotk-1.0.9.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.0.9 2024-01-04T11:24:15,428 Found link https://files.pythonhosted.org/packages/23/04/fd2a2b3b3177b01265b141db5e1cd962f2e7d435a3cafb23631c2f22076c/pybiotk-1.1.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.0 2024-01-04T11:24:15,428 Found link https://files.pythonhosted.org/packages/01/7b/9e6f646c28b48a6ef9a434a1b8169c7ec6b8ee8e5ce135c6aa60284ddb84/pybiotk-1.1.1.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.1.1 2024-01-04T11:24:15,429 Found link https://files.pythonhosted.org/packages/f7/2d/b38d75abba8592955a86e4d86c64229b02b37582049427c21925443b1807/pybiotk-1.2.0.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.0 2024-01-04T11:24:15,429 Found link https://files.pythonhosted.org/packages/d3/45/4f60c095cbd938d73427d73089a67014adb3f91d0b4f5b0e52a815bd550e/pybiotk-1.2.1.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.1 2024-01-04T11:24:15,429 Found link https://files.pythonhosted.org/packages/df/39/c06c8538af00a45170fa6216e13703fefeee2b5b195227cacff55d94e8bb/pybiotk-1.2.3.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.3 2024-01-04T11:24:15,429 Found link https://files.pythonhosted.org/packages/fb/15/83e8498512e533c13bf14dd62b83cf20da537c315092519e3930e43b3950/pybiotk-1.2.5.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.5 2024-01-04T11:24:15,430 Found link https://files.pythonhosted.org/packages/2f/ec/9b017cf466b5e2489566c1efb857b51519c4446d7d936bd00e26cbd0a0a3/pybiotk-1.2.6.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.6 2024-01-04T11:24:15,430 Found link https://files.pythonhosted.org/packages/c9/89/e369e981702b24082a840ab6e988062653b861ccd9bab4cfd7ec1e625c8b/pybiotk-1.2.7.tar.gz (from https://pypi.org/simple/pybiotk/), version: 1.2.7 2024-01-04T11:24:15,430 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybiotk/ 2024-01-04T11:24:15,431 Getting page https://www.piwheels.org/simple/pybiotk/ 2024-01-04T11:24:15,432 Found index url https://www.piwheels.org/simple/ 2024-01-04T11:24:15,495 Fetched page https://www.piwheels.org/simple/pybiotk/ as text/html 2024-01-04T11:24:15,512 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.2.7-cp311-cp311-linux_armv6l.whl#sha256=be2eff96a402b9d784fbe795b3ffff5ba8c149b8f780f362eeb902794cc56dab (from 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https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,524 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=1e5895fe1aa6a3e6127f180defd7a420edf6f8b5f4f1b689995f9758b7286846 (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,524 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,524 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=50c81a26e08771be990869c49acd65b172ef531d807be2ef54cc44de12463f76 (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,524 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,524 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=68c34ca6656477c1de6691804d909876e1f42817256079672904805fc0971aca (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,525 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,525 Skipping link: No binaries permitted for pybiotk: https://www.piwheels.org/simple/pybiotk/pybiotk-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=3d07a856b5dfd6012a973e73b174a6b8d70ae723b22a5396f9e1323a3396a327 (from https://www.piwheels.org/simple/pybiotk/) 2024-01-04T11:24:15,525 Skipping link: not a file: https://www.piwheels.org/simple/pybiotk/ 2024-01-04T11:24:15,525 Skipping link: not a file: https://pypi.org/simple/pybiotk/ 2024-01-04T11:24:15,549 Given no hashes to check 1 links for project 'pybiotk': discarding no candidates 2024-01-04T11:24:15,574 Collecting pybiotk==1.2.7 2024-01-04T11:24:15,576 Created temporary directory: /tmp/pip-unpack-zru12tdd 2024-01-04T11:24:15,636 Downloading pybiotk-1.2.7.tar.gz (100 kB) 2024-01-04T11:24:15,897 Added pybiotk==1.2.7 from https://files.pythonhosted.org/packages/c9/89/e369e981702b24082a840ab6e988062653b861ccd9bab4cfd7ec1e625c8b/pybiotk-1.2.7.tar.gz to build tracker '/tmp/pip-build-tracker-c4kj3tau' 2024-01-04T11:24:15,905 Created temporary directory: /tmp/pip-build-env-xahpn2ec 2024-01-04T11:24:15,916 Installing build dependencies: started 2024-01-04T11:24:15,917 Running command pip subprocess to install build dependencies 2024-01-04T11:24:17,073 Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-04T11:24:17,618 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-04T11:24:19,048 Collecting setuptools>=46.1.0 2024-01-04T11:24:19,065 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-04T11:24:19,408 Collecting setuptools_scm>=5 (from setuptools_scm[toml]>=5) 2024-01-04T11:24:19,426 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-8.0.4-py3-none-any.whl (42 kB) 2024-01-04T11:24:19,646 Collecting wheel 2024-01-04T11:24:19,667 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-04T11:24:20,914 Collecting Cython<3.0.0,>=0.29.30 2024-01-04T11:24:20,932 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.37-cp39-cp39-linux_armv7l.whl (4.9 MB) 2024-01-04T11:24:21,522 Collecting packaging>=20 (from setuptools_scm>=5->setuptools_scm[toml]>=5) 2024-01-04T11:24:21,540 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-04T11:24:21,663 Collecting typing-extensions (from setuptools_scm>=5->setuptools_scm[toml]>=5) 2024-01-04T11:24:21,680 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.9.0-py3-none-any.whl (32 kB) 2024-01-04T11:24:21,795 Collecting tomli>=1 (from setuptools_scm>=5->setuptools_scm[toml]>=5) 2024-01-04T11:24:21,816 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2024-01-04T11:24:23,709 Installing collected packages: wheel, typing-extensions, tomli, setuptools, packaging, Cython, setuptools_scm 2024-01-04T11:24:23,928 Creating /tmp/pip-build-env-xahpn2ec/overlay/bin 2024-01-04T11:24:23,930 changing mode of /tmp/pip-build-env-xahpn2ec/overlay/bin/wheel to 755 2024-01-04T11:24:28,998 changing mode of /tmp/pip-build-env-xahpn2ec/overlay/bin/cygdb to 755 2024-01-04T11:24:29,001 changing mode of /tmp/pip-build-env-xahpn2ec/overlay/bin/cython to 755 2024-01-04T11:24:29,003 changing mode of /tmp/pip-build-env-xahpn2ec/overlay/bin/cythonize to 755 2024-01-04T11:24:29,212 Successfully installed Cython-0.29.37 packaging-23.2 setuptools-69.0.3 setuptools_scm-8.0.4 tomli-2.0.1 typing-extensions-4.9.0 wheel-0.42.0 2024-01-04T11:24:29,430 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-04T11:24:29,431 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-04T11:24:29,810 Installing build dependencies: finished with status 'done' 2024-01-04T11:24:29,814 Getting requirements to build wheel: started 2024-01-04T11:24:29,815 Running command Getting requirements to build wheel 2024-01-04T11:24:32,263 Compiling src/bx/bitset.pyx because it changed. 2024-01-04T11:24:32,263 Compiling src/bx/cluster.pyx because it changed. 2024-01-04T11:24:32,263 Compiling src/bx/intersection.pyx because it changed. 2024-01-04T11:24:32,263 [1/3] Cythonizing src/bx/bitset.pyx 2024-01-04T11:24:32,264 [2/3] Cythonizing src/bx/cluster.pyx 2024-01-04T11:24:32,264 [3/3] Cythonizing src/bx/intersection.pyx 2024-01-04T11:24:32,551 running egg_info 2024-01-04T11:24:32,558 writing src/pybiotk.egg-info/PKG-INFO 2024-01-04T11:24:32,562 writing dependency_links to src/pybiotk.egg-info/dependency_links.txt 2024-01-04T11:24:32,566 writing entry points to src/pybiotk.egg-info/entry_points.txt 2024-01-04T11:24:32,568 writing requirements to src/pybiotk.egg-info/requires.txt 2024-01-04T11:24:32,569 writing top-level names to src/pybiotk.egg-info/top_level.txt 2024-01-04T11:24:32,657 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-04T11:24:32,668 reading manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:32,674 adding license file 'LICENSE.txt' 2024-01-04T11:24:32,681 writing manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:32,854 Getting requirements to build wheel: finished with status 'done' 2024-01-04T11:24:32,864 Created temporary directory: /tmp/pip-modern-metadata-4kjcad1l 2024-01-04T11:24:32,867 Preparing metadata (pyproject.toml): started 2024-01-04T11:24:32,868 Running command Preparing metadata (pyproject.toml) 2024-01-04T11:24:34,153 running dist_info 2024-01-04T11:24:34,176 creating /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info 2024-01-04T11:24:34,183 writing /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/PKG-INFO 2024-01-04T11:24:34,188 writing dependency_links to /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/dependency_links.txt 2024-01-04T11:24:34,191 writing entry points to /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/entry_points.txt 2024-01-04T11:24:34,194 writing requirements to /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/requires.txt 2024-01-04T11:24:34,195 writing top-level names to /tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/top_level.txt 2024-01-04T11:24:34,196 writing manifest file '/tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:34,267 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-04T11:24:34,276 reading manifest file '/tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:34,279 adding license file 'LICENSE.txt' 2024-01-04T11:24:34,284 writing manifest file '/tmp/pip-modern-metadata-4kjcad1l/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:34,285 creating '/tmp/pip-modern-metadata-4kjcad1l/pybiotk-1.2.7.dist-info' 2024-01-04T11:24:34,503 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-04T11:24:34,509 Source in /tmp/pip-wheel-j1ruxdfq/pybiotk_9cc5ffcb7f2e454d90b69d00d181e025 has version 1.2.7, which satisfies requirement pybiotk==1.2.7 from https://files.pythonhosted.org/packages/c9/89/e369e981702b24082a840ab6e988062653b861ccd9bab4cfd7ec1e625c8b/pybiotk-1.2.7.tar.gz 2024-01-04T11:24:34,509 Removed pybiotk==1.2.7 from https://files.pythonhosted.org/packages/c9/89/e369e981702b24082a840ab6e988062653b861ccd9bab4cfd7ec1e625c8b/pybiotk-1.2.7.tar.gz from build tracker '/tmp/pip-build-tracker-c4kj3tau' 2024-01-04T11:24:34,514 Created temporary directory: /tmp/pip-unpack-ayye3ypq 2024-01-04T11:24:34,514 Created temporary directory: /tmp/pip-unpack-1itr74w8 2024-01-04T11:24:34,536 Building wheels for collected packages: pybiotk 2024-01-04T11:24:34,540 Created temporary directory: /tmp/pip-wheel-ptdpdvoq 2024-01-04T11:24:34,540 Destination directory: /tmp/pip-wheel-ptdpdvoq 2024-01-04T11:24:34,542 Building wheel for pybiotk (pyproject.toml): started 2024-01-04T11:24:34,543 Running command Building wheel for pybiotk (pyproject.toml) 2024-01-04T11:24:35,866 running bdist_wheel 2024-01-04T11:24:35,909 running build 2024-01-04T11:24:35,909 running build_py 2024-01-04T11:24:35,919 creating build/lib.linux-armv7l-cpython-39 2024-01-04T11:24:35,919 creating build/lib.linux-armv7l-cpython-39/stream 2024-01-04T11:24:35,920 copying src/stream/__init__.py -> build/lib.linux-armv7l-cpython-39/stream 2024-01-04T11:24:35,922 copying src/stream/stream.py -> build/lib.linux-armv7l-cpython-39/stream 2024-01-04T11:24:35,924 copying src/stream/pipe.py -> build/lib.linux-armv7l-cpython-39/stream 2024-01-04T11:24:35,927 creating build/lib.linux-armv7l-cpython-39/pybiotk 2024-01-04T11:24:35,928 copying src/pybiotk/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk 2024-01-04T11:24:35,930 creating build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,931 copying src/pybiotk/annodb/gene.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,933 copying src/pybiotk/annodb/anno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,935 copying src/pybiotk/annodb/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,937 copying src/pybiotk/annodb/transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,939 copying src/pybiotk/annodb/merged_transcript.py -> build/lib.linux-armv7l-cpython-39/pybiotk/annodb 2024-01-04T11:24:35,941 creating build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2024-01-04T11:24:35,942 copying src/pybiotk/intervals/merge_bed3.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2024-01-04T11:24:35,944 copying src/pybiotk/intervals/merge_intervals.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2024-01-04T11:24:35,946 copying src/pybiotk/intervals/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2024-01-04T11:24:35,947 copying src/pybiotk/intervals/grange.py -> build/lib.linux-armv7l-cpython-39/pybiotk/intervals 2024-01-04T11:24:35,951 creating build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,951 copying src/pybiotk/utils/fastq_uniq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,953 copying src/pybiotk/utils/reverse_fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,955 copying src/pybiotk/utils/normalize.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,956 copying src/pybiotk/utils/utils.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,958 copying src/pybiotk/utils/bam_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,960 copying src/pybiotk/utils/fastx_rename.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,962 copying src/pybiotk/utils/subseq_analysis.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,963 copying src/pybiotk/utils/pyanno.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,965 copying src/pybiotk/utils/ercc_parser.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,967 copying src/pybiotk/utils/merge_row.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,969 copying src/pybiotk/utils/fasta_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,971 copying src/pybiotk/utils/rmats_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,972 copying src/pybiotk/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,974 copying src/pybiotk/utils/merge_subseq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,975 copying src/pybiotk/utils/gtf_filter.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,977 copying src/pybiotk/utils/fastq_join.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,979 copying src/pybiotk/utils/summary_log.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,981 copying src/pybiotk/utils/fragment_size.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,983 copying src/pybiotk/utils/read_tables.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,985 copying src/pybiotk/utils/reference_count.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,986 copying src/pybiotk/utils/genomefetcher.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,989 copying src/pybiotk/utils/seq_random.py -> build/lib.linux-armv7l-cpython-39/pybiotk/utils 2024-01-04T11:24:35,991 creating build/lib.linux-armv7l-cpython-39/pybiotk/data 2024-01-04T11:24:35,992 copying src/pybiotk/data/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2024-01-04T11:24:35,994 creating build/lib.linux-armv7l-cpython-39/pybiotk/string 2024-01-04T11:24:35,994 copying src/pybiotk/string/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2024-01-04T11:24:35,996 copying src/pybiotk/string/motif.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2024-01-04T11:24:35,998 copying src/pybiotk/string/sequence.py -> build/lib.linux-armv7l-cpython-39/pybiotk/string 2024-01-04T11:24:36,000 creating build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,001 copying src/pybiotk/io/bw.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,003 copying src/pybiotk/io/gtf.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,005 copying src/pybiotk/io/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,007 copying src/pybiotk/io/bam.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,009 copying src/pybiotk/io/bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,011 copying src/pybiotk/io/fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,013 copying src/pybiotk/io/fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/io 2024-01-04T11:24:36,015 creating build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,016 copying src/pybiotk/convert/bam2fastx.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,018 copying src/pybiotk/convert/gtf2bed.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,020 copying src/pybiotk/convert/bed2bedgraph.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,022 copying src/pybiotk/convert/fa2fastq.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,023 copying src/pybiotk/convert/fq2fasta.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,025 copying src/pybiotk/convert/__init__.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,026 copying src/pybiotk/convert/bampe_order_by_name.py -> build/lib.linux-armv7l-cpython-39/pybiotk/convert 2024-01-04T11:24:36,028 running egg_info 2024-01-04T11:24:36,034 writing src/pybiotk.egg-info/PKG-INFO 2024-01-04T11:24:36,038 writing dependency_links to src/pybiotk.egg-info/dependency_links.txt 2024-01-04T11:24:36,041 writing entry points to src/pybiotk.egg-info/entry_points.txt 2024-01-04T11:24:36,043 writing requirements to src/pybiotk.egg-info/requires.txt 2024-01-04T11:24:36,044 writing top-level names to src/pybiotk.egg-info/top_level.txt 2024-01-04T11:24:36,091 ERROR setuptools_scm._file_finders.git listing git files failed - pretending there aren't any 2024-01-04T11:24:36,100 reading manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:36,105 adding license file 'LICENSE.txt' 2024-01-04T11:24:36,114 writing manifest file 'src/pybiotk.egg-info/SOURCES.txt' 2024-01-04T11:24:36,122 copying src/pybiotk/data/hg38.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2024-01-04T11:24:36,124 copying src/pybiotk/data/mm10.chrom.sizes -> build/lib.linux-armv7l-cpython-39/pybiotk/data 2024-01-04T11:24:36,132 running build_ext 2024-01-04T11:24:36,137 building 'pybiotk.bx.bitset' extension 2024-01-04T11:24:36,138 creating build/temp.linux-armv7l-cpython-39 2024-01-04T11:24:36,138 creating build/temp.linux-armv7l-cpython-39/build 2024-01-04T11:24:36,139 creating build/temp.linux-armv7l-cpython-39/build/src 2024-01-04T11:24:36,140 creating build/temp.linux-armv7l-cpython-39/build/src/bx 2024-01-04T11:24:36,141 creating build/temp.linux-armv7l-cpython-39/src 2024-01-04T11:24:36,141 creating build/temp.linux-armv7l-cpython-39/src/bx 2024-01-04T11:24:36,142 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/bitset.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o 2024-01-04T11:24:41,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/binBits.c -o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o 2024-01-04T11:24:41,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/bits.c -o build/temp.linux-armv7l-cpython-39/src/bx/bits.o 2024-01-04T11:24:42,365 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/common.c -o build/temp.linux-armv7l-cpython-39/src/bx/common.o 2024-01-04T11:24:42,537 creating build/lib.linux-armv7l-cpython-39/pybiotk/bx 2024-01-04T11:24:42,538 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/bitset.o build/temp.linux-armv7l-cpython-39/src/bx/binBits.o build/temp.linux-armv7l-cpython-39/src/bx/bits.o build/temp.linux-armv7l-cpython-39/src/bx/common.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so 2024-01-04T11:24:42,664 building 'pybiotk.bx.cluster' extension 2024-01-04T11:24:42,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c build/src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o 2024-01-04T11:24:44,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/bx -I/usr/include/python3.9 -c src/bx/cluster.c -o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o 2024-01-04T11:24:45,172 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/cluster.o build/temp.linux-armv7l-cpython-39/src/bx/cluster.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so 2024-01-04T11:24:45,278 building 'pybiotk.bx.intersection' extension 2024-01-04T11:24:45,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/usr/include/python3.9 -c build/src/bx/intersection.c -o build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o 2024-01-04T11:24:54,050 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/build/src/bx/intersection.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so 2024-01-04T11:24:54,178 running build_scripts 2024-01-04T11:24:54,179 creating build/scripts-3.9 2024-01-04T11:24:54,180 copying rscripts/plot_venn.R -> build/scripts-3.9 2024-01-04T11:24:54,183 copying rscripts/plot_deeptools_fragmentsize.R -> build/scripts-3.9 2024-01-04T11:24:54,185 copying rscripts/plot_FRiPs.R -> build/scripts-3.9 2024-01-04T11:24:54,187 copying rscripts/plot_corr.R -> build/scripts-3.9 2024-01-04T11:24:54,189 copying rscripts/diff_expr_DESeq2.R -> build/scripts-3.9 2024-01-04T11:24:54,191 copying rscripts/peak_anno.R -> build/scripts-3.9 2024-01-04T11:24:54,193 copying rscripts/diff_expr_edgeR.R -> build/scripts-3.9 2024-01-04T11:24:54,196 copying rscripts/plot_rep_cor.R -> build/scripts-3.9 2024-01-04T11:24:54,198 copying rscripts/plot_peak_width.R -> build/scripts-3.9 2024-01-04T11:24:54,200 copying rscripts/plot_chip_summary.R -> build/scripts-3.9 2024-01-04T11:24:54,202 copying rscripts/diff_expr_plot.R -> build/scripts-3.9 2024-01-04T11:24:54,205 copying rscripts/plot_hist.R -> build/scripts-3.9 2024-01-04T11:24:54,207 copying rscripts/plot_bar.R -> build/scripts-3.9 2024-01-04T11:24:54,209 copying scripts/remove_duplicates.sh -> build/scripts-3.9 2024-01-04T11:24:54,211 copying scripts/get_chrom_length.sh -> build/scripts-3.9 2024-01-04T11:24:54,213 copying scripts/gtfparser.sh -> build/scripts-3.9 2024-01-04T11:24:54,215 copying scripts/fasta_u2t.sh -> build/scripts-3.9 2024-01-04T11:24:54,217 copying scripts/fastq_len.sh -> build/scripts-3.9 2024-01-04T11:24:54,219 copying scripts/fasta_len.sh -> build/scripts-3.9 2024-01-04T11:24:54,220 copying scripts/merge_subseq.sh -> build/scripts-3.9 2024-01-04T11:24:54,222 changing mode of build/scripts-3.9/plot_venn.R from 644 to 755 2024-01-04T11:24:54,222 changing mode of build/scripts-3.9/plot_deeptools_fragmentsize.R from 644 to 755 2024-01-04T11:24:54,222 changing mode of build/scripts-3.9/plot_FRiPs.R from 644 to 755 2024-01-04T11:24:54,223 changing mode of build/scripts-3.9/plot_corr.R from 644 to 755 2024-01-04T11:24:54,223 changing mode of build/scripts-3.9/diff_expr_DESeq2.R from 644 to 755 2024-01-04T11:24:54,223 changing mode of build/scripts-3.9/peak_anno.R from 644 to 755 2024-01-04T11:24:54,224 changing mode of build/scripts-3.9/diff_expr_edgeR.R from 644 to 755 2024-01-04T11:24:54,224 changing mode of build/scripts-3.9/plot_rep_cor.R from 644 to 755 2024-01-04T11:24:54,224 changing mode of build/scripts-3.9/plot_peak_width.R from 644 to 755 2024-01-04T11:24:54,225 changing mode of build/scripts-3.9/plot_chip_summary.R from 644 to 755 2024-01-04T11:24:54,225 changing mode of build/scripts-3.9/diff_expr_plot.R from 644 to 755 2024-01-04T11:24:54,225 changing mode of build/scripts-3.9/plot_hist.R from 644 to 755 2024-01-04T11:24:54,226 changing mode of build/scripts-3.9/plot_bar.R from 644 to 755 2024-01-04T11:24:54,226 changing mode of build/scripts-3.9/remove_duplicates.sh from 644 to 755 2024-01-04T11:24:54,226 changing mode of build/scripts-3.9/get_chrom_length.sh from 644 to 755 2024-01-04T11:24:54,227 changing mode of build/scripts-3.9/gtfparser.sh from 644 to 755 2024-01-04T11:24:54,227 changing mode of build/scripts-3.9/fasta_u2t.sh from 644 to 755 2024-01-04T11:24:54,227 changing mode of build/scripts-3.9/fastq_len.sh from 644 to 755 2024-01-04T11:24:54,228 changing mode of build/scripts-3.9/fasta_len.sh from 644 to 755 2024-01-04T11:24:54,228 changing mode of build/scripts-3.9/merge_subseq.sh from 644 to 755 2024-01-04T11:24:54,249 installing to build/bdist.linux-armv7l/wheel 2024-01-04T11:24:54,249 running install 2024-01-04T11:24:54,275 running install_lib 2024-01-04T11:24:54,284 creating build/bdist.linux-armv7l 2024-01-04T11:24:54,285 creating build/bdist.linux-armv7l/wheel 2024-01-04T11:24:54,286 creating build/bdist.linux-armv7l/wheel/stream 2024-01-04T11:24:54,287 copying build/lib.linux-armv7l-cpython-39/stream/__init__.py -> build/bdist.linux-armv7l/wheel/stream 2024-01-04T11:24:54,289 copying build/lib.linux-armv7l-cpython-39/stream/stream.py -> build/bdist.linux-armv7l/wheel/stream 2024-01-04T11:24:54,291 copying build/lib.linux-armv7l-cpython-39/stream/pipe.py -> build/bdist.linux-armv7l/wheel/stream 2024-01-04T11:24:54,293 creating build/bdist.linux-armv7l/wheel/pybiotk 2024-01-04T11:24:54,295 creating build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,296 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/gene.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,298 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/anno.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,300 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,302 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,304 copying build/lib.linux-armv7l-cpython-39/pybiotk/annodb/merged_transcript.py -> build/bdist.linux-armv7l/wheel/pybiotk/annodb 2024-01-04T11:24:54,306 creating build/bdist.linux-armv7l/wheel/pybiotk/intervals 2024-01-04T11:24:54,307 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_bed3.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2024-01-04T11:24:54,309 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/merge_intervals.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2024-01-04T11:24:54,311 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2024-01-04T11:24:54,312 copying build/lib.linux-armv7l-cpython-39/pybiotk/intervals/grange.py -> build/bdist.linux-armv7l/wheel/pybiotk/intervals 2024-01-04T11:24:54,315 creating build/bdist.linux-armv7l/wheel/pybiotk/bx 2024-01-04T11:24:54,316 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2024-01-04T11:24:54,327 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2024-01-04T11:24:54,332 copying build/lib.linux-armv7l-cpython-39/pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/pybiotk/bx 2024-01-04T11:24:54,341 creating build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,342 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_uniq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,344 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reverse_fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,345 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/normalize.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,347 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/utils.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,349 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/bam_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,351 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastx_rename.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,353 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/subseq_analysis.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,354 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/pyanno.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,357 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/ercc_parser.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,358 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_row.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,360 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fasta_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,362 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/rmats_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,364 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,365 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/merge_subseq.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,367 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/gtf_filter.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,369 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fastq_join.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,371 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/summary_log.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,373 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/fragment_size.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,375 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/read_tables.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,377 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/reference_count.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,379 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/genomefetcher.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,381 copying build/lib.linux-armv7l-cpython-39/pybiotk/utils/seq_random.py -> build/bdist.linux-armv7l/wheel/pybiotk/utils 2024-01-04T11:24:54,382 copying build/lib.linux-armv7l-cpython-39/pybiotk/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk 2024-01-04T11:24:54,384 creating build/bdist.linux-armv7l/wheel/pybiotk/data 2024-01-04T11:24:54,385 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/data 2024-01-04T11:24:54,387 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/mm10.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data 2024-01-04T11:24:54,388 copying build/lib.linux-armv7l-cpython-39/pybiotk/data/hg38.chrom.sizes -> build/bdist.linux-armv7l/wheel/pybiotk/data 2024-01-04T11:24:54,391 creating build/bdist.linux-armv7l/wheel/pybiotk/string 2024-01-04T11:24:54,392 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2024-01-04T11:24:54,393 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/motif.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2024-01-04T11:24:54,395 copying build/lib.linux-armv7l-cpython-39/pybiotk/string/sequence.py -> build/bdist.linux-armv7l/wheel/pybiotk/string 2024-01-04T11:24:54,397 creating build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,398 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bw.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,400 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/gtf.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,403 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,404 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bam.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,406 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,409 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,411 copying build/lib.linux-armv7l-cpython-39/pybiotk/io/fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/io 2024-01-04T11:24:54,413 creating build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,414 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bam2fastx.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,416 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/gtf2bed.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,417 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bed2bedgraph.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,419 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fa2fastq.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,421 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/fq2fasta.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,422 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/__init__.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,424 copying build/lib.linux-armv7l-cpython-39/pybiotk/convert/bampe_order_by_name.py -> build/bdist.linux-armv7l/wheel/pybiotk/convert 2024-01-04T11:24:54,425 running install_egg_info 2024-01-04T11:24:54,435 Copying src/pybiotk.egg-info to build/bdist.linux-armv7l/wheel/pybiotk-1.2.7-py3.9.egg-info 2024-01-04T11:24:54,449 running install_scripts 2024-01-04T11:24:54,450 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data 2024-01-04T11:24:54,450 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,451 copying build/scripts-3.9/remove_duplicates.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,453 copying build/scripts-3.9/plot_venn.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,455 copying build/scripts-3.9/get_chrom_length.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,457 copying build/scripts-3.9/plot_deeptools_fragmentsize.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,458 copying build/scripts-3.9/gtfparser.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,460 copying build/scripts-3.9/plot_FRiPs.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,462 copying build/scripts-3.9/fasta_u2t.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,464 copying build/scripts-3.9/plot_corr.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,465 copying build/scripts-3.9/diff_expr_DESeq2.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,467 copying build/scripts-3.9/peak_anno.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,469 copying build/scripts-3.9/fastq_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,471 copying build/scripts-3.9/diff_expr_edgeR.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,473 copying build/scripts-3.9/plot_rep_cor.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,474 copying build/scripts-3.9/plot_peak_width.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,476 copying build/scripts-3.9/fasta_len.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,478 copying build/scripts-3.9/plot_chip_summary.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,480 copying build/scripts-3.9/diff_expr_plot.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,483 copying build/scripts-3.9/plot_hist.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,484 copying build/scripts-3.9/plot_bar.R -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,486 copying build/scripts-3.9/merge_subseq.sh -> build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts 2024-01-04T11:24:54,488 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/remove_duplicates.sh to 755 2024-01-04T11:24:54,488 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_venn.R to 755 2024-01-04T11:24:54,488 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/get_chrom_length.sh to 755 2024-01-04T11:24:54,489 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_deeptools_fragmentsize.R to 755 2024-01-04T11:24:54,489 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/gtfparser.sh to 755 2024-01-04T11:24:54,489 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_FRiPs.R to 755 2024-01-04T11:24:54,490 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/fasta_u2t.sh to 755 2024-01-04T11:24:54,490 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_corr.R to 755 2024-01-04T11:24:54,490 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/diff_expr_DESeq2.R to 755 2024-01-04T11:24:54,491 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/peak_anno.R to 755 2024-01-04T11:24:54,491 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/fastq_len.sh to 755 2024-01-04T11:24:54,491 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/diff_expr_edgeR.R to 755 2024-01-04T11:24:54,492 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_rep_cor.R to 755 2024-01-04T11:24:54,492 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_peak_width.R to 755 2024-01-04T11:24:54,492 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/fasta_len.sh to 755 2024-01-04T11:24:54,493 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_chip_summary.R to 755 2024-01-04T11:24:54,493 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/diff_expr_plot.R to 755 2024-01-04T11:24:54,493 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_hist.R to 755 2024-01-04T11:24:54,494 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/plot_bar.R to 755 2024-01-04T11:24:54,494 changing mode of build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.data/scripts/merge_subseq.sh to 755 2024-01-04T11:24:54,541 creating build/bdist.linux-armv7l/wheel/pybiotk-1.2.7.dist-info/WHEEL 2024-01-04T11:24:54,543 creating '/tmp/pip-wheel-ptdpdvoq/.tmp-jo9zflcc/pybiotk-1.2.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-04T11:24:54,546 adding 'pybiotk/__init__.py' 2024-01-04T11:24:54,547 adding 'pybiotk/annodb/__init__.py' 2024-01-04T11:24:54,549 adding 'pybiotk/annodb/anno.py' 2024-01-04T11:24:54,551 adding 'pybiotk/annodb/gene.py' 2024-01-04T11:24:54,553 adding 'pybiotk/annodb/merged_transcript.py' 2024-01-04T11:24:54,554 adding 'pybiotk/annodb/transcript.py' 2024-01-04T11:24:54,648 adding 'pybiotk/bx/bitset.cpython-39-arm-linux-gnueabihf.so' 2024-01-04T11:24:54,685 adding 'pybiotk/bx/cluster.cpython-39-arm-linux-gnueabihf.so' 2024-01-04T11:24:54,816 adding 'pybiotk/bx/intersection.cpython-39-arm-linux-gnueabihf.so' 2024-01-04T11:24:54,822 adding 'pybiotk/convert/__init__.py' 2024-01-04T11:24:54,823 adding 'pybiotk/convert/bam2fastx.py' 2024-01-04T11:24:54,825 adding 'pybiotk/convert/bampe_order_by_name.py' 2024-01-04T11:24:54,826 adding 'pybiotk/convert/bed2bedgraph.py' 2024-01-04T11:24:54,827 adding 'pybiotk/convert/fa2fastq.py' 2024-01-04T11:24:54,828 adding 'pybiotk/convert/fq2fasta.py' 2024-01-04T11:24:54,830 adding 'pybiotk/convert/gtf2bed.py' 2024-01-04T11:24:54,831 adding 'pybiotk/data/__init__.py' 2024-01-04T11:24:54,834 adding 'pybiotk/data/hg38.chrom.sizes' 2024-01-04T11:24:54,835 adding 'pybiotk/data/mm10.chrom.sizes' 2024-01-04T11:24:54,837 adding 'pybiotk/intervals/__init__.py' 2024-01-04T11:24:54,838 adding 'pybiotk/intervals/grange.py' 2024-01-04T11:24:54,840 adding 'pybiotk/intervals/merge_bed3.py' 2024-01-04T11:24:54,841 adding 'pybiotk/intervals/merge_intervals.py' 2024-01-04T11:24:54,843 adding 'pybiotk/io/__init__.py' 2024-01-04T11:24:54,844 adding 'pybiotk/io/bam.py' 2024-01-04T11:24:54,846 adding 'pybiotk/io/bed.py' 2024-01-04T11:24:54,847 adding 'pybiotk/io/bw.py' 2024-01-04T11:24:54,849 adding 'pybiotk/io/fasta.py' 2024-01-04T11:24:54,850 adding 'pybiotk/io/fastq.py' 2024-01-04T11:24:54,853 adding 'pybiotk/io/gtf.py' 2024-01-04T11:24:54,854 adding 'pybiotk/string/__init__.py' 2024-01-04T11:24:54,856 adding 'pybiotk/string/motif.py' 2024-01-04T11:24:54,857 adding 'pybiotk/string/sequence.py' 2024-01-04T11:24:54,858 adding 'pybiotk/utils/__init__.py' 2024-01-04T11:24:54,860 adding 'pybiotk/utils/bam_random.py' 2024-01-04T11:24:54,861 adding 'pybiotk/utils/ercc_parser.py' 2024-01-04T11:24:54,863 adding 'pybiotk/utils/fasta_filter.py' 2024-01-04T11:24:54,864 adding 'pybiotk/utils/fastq_join.py' 2024-01-04T11:24:54,865 adding 'pybiotk/utils/fastq_uniq.py' 2024-01-04T11:24:54,867 adding 'pybiotk/utils/fastx_rename.py' 2024-01-04T11:24:54,868 adding 'pybiotk/utils/fragment_size.py' 2024-01-04T11:24:54,870 adding 'pybiotk/utils/genomefetcher.py' 2024-01-04T11:24:54,871 adding 'pybiotk/utils/gtf_filter.py' 2024-01-04T11:24:54,873 adding 'pybiotk/utils/merge_row.py' 2024-01-04T11:24:54,874 adding 'pybiotk/utils/merge_subseq.py' 2024-01-04T11:24:54,875 adding 'pybiotk/utils/normalize.py' 2024-01-04T11:24:54,877 adding 'pybiotk/utils/pyanno.py' 2024-01-04T11:24:54,879 adding 'pybiotk/utils/read_tables.py' 2024-01-04T11:24:54,880 adding 'pybiotk/utils/reference_count.py' 2024-01-04T11:24:54,881 adding 'pybiotk/utils/reverse_fastx.py' 2024-01-04T11:24:54,883 adding 'pybiotk/utils/rmats_filter.py' 2024-01-04T11:24:54,884 adding 'pybiotk/utils/seq_random.py' 2024-01-04T11:24:54,885 adding 'pybiotk/utils/subseq_analysis.py' 2024-01-04T11:24:54,887 adding 'pybiotk/utils/summary_log.py' 2024-01-04T11:24:54,889 adding 'pybiotk/utils/utils.py' 2024-01-04T11:24:54,892 adding 'pybiotk-1.2.7.data/scripts/diff_expr_DESeq2.R' 2024-01-04T11:24:54,894 adding 'pybiotk-1.2.7.data/scripts/diff_expr_edgeR.R' 2024-01-04T11:24:54,896 adding 'pybiotk-1.2.7.data/scripts/diff_expr_plot.R' 2024-01-04T11:24:54,897 adding 'pybiotk-1.2.7.data/scripts/fasta_len.sh' 2024-01-04T11:24:54,898 adding 'pybiotk-1.2.7.data/scripts/fasta_u2t.sh' 2024-01-04T11:24:54,900 adding 'pybiotk-1.2.7.data/scripts/fastq_len.sh' 2024-01-04T11:24:54,901 adding 'pybiotk-1.2.7.data/scripts/get_chrom_length.sh' 2024-01-04T11:24:54,902 adding 'pybiotk-1.2.7.data/scripts/gtfparser.sh' 2024-01-04T11:24:54,903 adding 'pybiotk-1.2.7.data/scripts/merge_subseq.sh' 2024-01-04T11:24:54,904 adding 'pybiotk-1.2.7.data/scripts/peak_anno.R' 2024-01-04T11:24:54,906 adding 'pybiotk-1.2.7.data/scripts/plot_FRiPs.R' 2024-01-04T11:24:54,907 adding 'pybiotk-1.2.7.data/scripts/plot_bar.R' 2024-01-04T11:24:54,908 adding 'pybiotk-1.2.7.data/scripts/plot_chip_summary.R' 2024-01-04T11:24:54,910 adding 'pybiotk-1.2.7.data/scripts/plot_corr.R' 2024-01-04T11:24:54,911 adding 'pybiotk-1.2.7.data/scripts/plot_deeptools_fragmentsize.R' 2024-01-04T11:24:54,913 adding 'pybiotk-1.2.7.data/scripts/plot_hist.R' 2024-01-04T11:24:54,914 adding 'pybiotk-1.2.7.data/scripts/plot_peak_width.R' 2024-01-04T11:24:54,915 adding 'pybiotk-1.2.7.data/scripts/plot_rep_cor.R' 2024-01-04T11:24:54,917 adding 'pybiotk-1.2.7.data/scripts/plot_venn.R' 2024-01-04T11:24:54,918 adding 'pybiotk-1.2.7.data/scripts/remove_duplicates.sh' 2024-01-04T11:24:54,920 adding 'stream/__init__.py' 2024-01-04T11:24:54,922 adding 'stream/pipe.py' 2024-01-04T11:24:54,924 adding 'stream/stream.py' 2024-01-04T11:24:54,925 adding 'pybiotk-1.2.7.dist-info/LICENSE.txt' 2024-01-04T11:24:54,926 adding 'pybiotk-1.2.7.dist-info/METADATA' 2024-01-04T11:24:54,927 adding 'pybiotk-1.2.7.dist-info/WHEEL' 2024-01-04T11:24:54,928 adding 'pybiotk-1.2.7.dist-info/entry_points.txt' 2024-01-04T11:24:54,929 adding 'pybiotk-1.2.7.dist-info/top_level.txt' 2024-01-04T11:24:54,931 adding 'pybiotk-1.2.7.dist-info/RECORD' 2024-01-04T11:24:54,943 removing build/bdist.linux-armv7l/wheel 2024-01-04T11:24:55,096 Building wheel for pybiotk (pyproject.toml): finished with status 'done' 2024-01-04T11:24:55,115 Created wheel for pybiotk: filename=pybiotk-1.2.7-cp39-cp39-linux_armv7l.whl size=568320 sha256=109478ef17f1cfa2e053a1865c6d523b1c0f142ee846d2f1b327bec7bd32c550 2024-01-04T11:24:55,116 Stored in directory: /tmp/pip-ephem-wheel-cache-ywt9nk70/wheels/7d/07/0c/fa45ea999b27e99c60c2b7474cf1172f7fcf869595e4d8acce 2024-01-04T11:24:55,130 Successfully built pybiotk 2024-01-04T11:24:55,155 Removed build tracker: '/tmp/pip-build-tracker-c4kj3tau'