2024-01-05T02:07:13,418 Created temporary directory: /tmp/pip-build-tracker-kaaph6jr 2024-01-05T02:07:13,419 Initialized build tracking at /tmp/pip-build-tracker-kaaph6jr 2024-01-05T02:07:13,419 Created build tracker: /tmp/pip-build-tracker-kaaph6jr 2024-01-05T02:07:13,420 Entered build tracker: /tmp/pip-build-tracker-kaaph6jr 2024-01-05T02:07:13,421 Created temporary directory: /tmp/pip-wheel-ut2q25b8 2024-01-05T02:07:13,424 Created temporary directory: /tmp/pip-ephem-wheel-cache-hikk96nr 2024-01-05T02:07:13,445 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-05T02:07:13,449 2 location(s) to search for versions of dedalus: 2024-01-05T02:07:13,449 * https://pypi.org/simple/dedalus/ 2024-01-05T02:07:13,449 * https://www.piwheels.org/simple/dedalus/ 2024-01-05T02:07:13,450 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-05T02:07:13,451 Getting page https://pypi.org/simple/dedalus/ 2024-01-05T02:07:13,452 Found index url https://pypi.org/simple/ 2024-01-05T02:07:13,674 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-05T02:07:13,678 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-05T02:07:13,678 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-05T02:07:13,679 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-05T02:07:13,680 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-05T02:07:13,680 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-05T02:07:13,681 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-05T02:07:13,682 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-05T02:07:13,683 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-05T02:07:13,683 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-05T02:07:13,684 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-05T02:07:13,685 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-05T02:07:13,685 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-05T02:07:13,686 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-05T02:07:13,687 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-05T02:07:13,688 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-05T02:07:13,689 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-05T02:07:13,690 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-05T02:07:13,690 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-05T02:07:13,691 Found index url https://www.piwheels.org/simple/ 2024-01-05T02:07:13,857 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-05T02:07:13,859 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-05T02:07:13,859 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-05T02:07:13,879 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-05T02:07:13,897 Collecting dedalus==3.0.0 2024-01-05T02:07:13,900 Created temporary directory: /tmp/pip-unpack-2j8mg9nl 2024-01-05T02:07:14,113 Downloading dedalus-3.0.0.tar.gz (245 kB) 2024-01-05T02:07:14,410 Added dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-kaaph6jr' 2024-01-05T02:07:14,417 Created temporary directory: /tmp/pip-build-env-014lhban 2024-01-05T02:07:14,422 Installing build dependencies: started 2024-01-05T02:07:14,423 Running command pip subprocess to install build dependencies 2024-01-05T02:07:15,591 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-05T02:07:16,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-05T02:07:17,546 Collecting cython>=3.0.5 2024-01-05T02:07:17,562 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp311-cp311-linux_armv7l.whl (11.7 MB) 2024-01-05T02:07:18,083 Collecting mpi4py>=2.0.0 2024-01-05T02:07:18,100 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp311-cp311-linux_armv7l.whl (2.8 MB) 2024-01-05T02:07:18,793 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-05T02:07:18,797 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-05T02:07:18,800 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-05T02:07:18,803 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-05T02:07:18,807 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2024-01-05T02:07:19,079 Collecting numpy>=1.20.0 2024-01-05T02:07:19,094 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp311-cp311-linux_armv7l.whl (19.5 MB) 2024-01-05T02:07:20,771 Collecting setuptools 2024-01-05T02:07:20,787 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-05T02:07:21,009 Collecting wheel 2024-01-05T02:07:21,023 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-05T02:07:23,697 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-05T02:07:23,919 Creating /tmp/pip-build-env-014lhban/overlay/local/bin 2024-01-05T02:07:23,922 changing mode of /tmp/pip-build-env-014lhban/overlay/local/bin/wheel to 755 2024-01-05T02:07:34,001 changing mode of /tmp/pip-build-env-014lhban/overlay/local/bin/f2py to 755 2024-01-05T02:07:37,993 changing mode of /tmp/pip-build-env-014lhban/overlay/local/bin/cygdb to 755 2024-01-05T02:07:37,996 changing mode of /tmp/pip-build-env-014lhban/overlay/local/bin/cython to 755 2024-01-05T02:07:37,998 changing mode of /tmp/pip-build-env-014lhban/overlay/local/bin/cythonize to 755 2024-01-05T02:07:38,041 Successfully installed cython-3.0.7 mpi4py-3.1.5 numpy-1.26.2 setuptools-69.0.3 wheel-0.42.0 2024-01-05T02:07:38,373 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-05T02:07:38,374 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-05T02:07:38,804 Installing build dependencies: finished with status 'done' 2024-01-05T02:07:38,822 Getting requirements to build wheel: started 2024-01-05T02:07:38,823 Running command Getting requirements to build wheel 2024-01-05T02:07:57,193 Configuration: 2024-01-05T02:07:57,194 INCLUDE_MPI = True 2024-01-05T02:07:57,194 INCLUDE_FFTW = True 2024-01-05T02:07:57,195 FFTW_STATIC = False 2024-01-05T02:07:57,195 CYTHON_PROFILE = False 2024-01-05T02:07:57,196 Looking for mpi include path: 2024-01-05T02:07:57,197 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:07:57,198 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:07:57,198 Looking for mpi library path: 2024-01-05T02:07:57,199 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:07:57,199 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:07:57,200 Looking for fftw include path: 2024-01-05T02:07:57,200 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:07:57,201 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:07:57,202 Looking for fftw library path: 2024-01-05T02:07:57,202 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:07:57,203 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:07:57,204 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-05T02:07:57,204 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-05T02:07:57,205 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-05T02:07:57,205 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-05T02:07:57,206 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-05T02:07:57,207 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-05T02:07:57,208 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-05T02:07:57,208 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-05T02:07:57,268 running egg_info 2024-01-05T02:07:57,275 writing dedalus.egg-info/PKG-INFO 2024-01-05T02:07:57,279 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-05T02:07:57,280 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-05T02:07:57,282 writing requirements to dedalus.egg-info/requires.txt 2024-01-05T02:07:57,283 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-05T02:07:57,335 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,336 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,337 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,337 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,338 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,338 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,339 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,339 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,340 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,340 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,341 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,341 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,342 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,342 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,343 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:07:57,344 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-05T02:07:57,346 reading manifest template 'MANIFEST.in' 2024-01-05T02:07:57,359 adding license file 'LICENSE.txt' 2024-01-05T02:07:57,364 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-05T02:07:58,610 Getting requirements to build wheel: finished with status 'done' 2024-01-05T02:07:58,620 Created temporary directory: /tmp/pip-modern-metadata-84i2aotw 2024-01-05T02:07:58,623 Preparing metadata (pyproject.toml): started 2024-01-05T02:07:58,624 Running command Preparing metadata (pyproject.toml) 2024-01-05T02:08:00,226 Configuration: 2024-01-05T02:08:00,227 INCLUDE_MPI = True 2024-01-05T02:08:00,227 INCLUDE_FFTW = True 2024-01-05T02:08:00,228 FFTW_STATIC = False 2024-01-05T02:08:00,229 CYTHON_PROFILE = False 2024-01-05T02:08:00,230 Looking for mpi include path: 2024-01-05T02:08:00,231 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:08:00,232 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:00,232 Looking for mpi library path: 2024-01-05T02:08:00,232 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:08:00,233 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:00,233 Looking for fftw include path: 2024-01-05T02:08:00,234 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:08:00,234 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:00,235 Looking for fftw library path: 2024-01-05T02:08:00,235 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:08:00,236 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:00,275 running dist_info 2024-01-05T02:08:00,293 creating /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info 2024-01-05T02:08:00,298 writing /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/PKG-INFO 2024-01-05T02:08:00,302 writing dependency_links to /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/dependency_links.txt 2024-01-05T02:08:00,303 writing entry points to /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/entry_points.txt 2024-01-05T02:08:00,305 writing requirements to /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/requires.txt 2024-01-05T02:08:00,306 writing top-level names to /tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/top_level.txt 2024-01-05T02:08:00,307 writing manifest file '/tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/SOURCES.txt' 2024-01-05T02:08:00,345 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,346 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,346 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,347 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,348 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,348 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,349 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,350 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,350 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,351 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,351 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,352 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,353 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,353 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,354 dependency /tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-05T02:08:00,354 reading manifest file '/tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/SOURCES.txt' 2024-01-05T02:08:00,355 reading manifest template 'MANIFEST.in' 2024-01-05T02:08:00,367 adding license file 'LICENSE.txt' 2024-01-05T02:08:00,371 writing manifest file '/tmp/pip-modern-metadata-84i2aotw/dedalus.egg-info/SOURCES.txt' 2024-01-05T02:08:00,372 creating '/tmp/pip-modern-metadata-84i2aotw/dedalus-3.0.0.dist-info' 2024-01-05T02:08:00,628 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-05T02:08:00,632 Source in /tmp/pip-wheel-ut2q25b8/dedalus_8463dc4b4864424ebc89d79913f57174 has version 3.0.0, which satisfies requirement dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz 2024-01-05T02:08:00,633 Removed dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-kaaph6jr' 2024-01-05T02:08:00,639 Created temporary directory: /tmp/pip-unpack-_2rjju0l 2024-01-05T02:08:00,640 Created temporary directory: /tmp/pip-unpack-grkdx9t4 2024-01-05T02:08:00,657 Building wheels for collected packages: dedalus 2024-01-05T02:08:00,661 Created temporary directory: /tmp/pip-wheel-cyajbu34 2024-01-05T02:08:00,662 Destination directory: /tmp/pip-wheel-cyajbu34 2024-01-05T02:08:00,664 Building wheel for dedalus (pyproject.toml): started 2024-01-05T02:08:00,666 Running command Building wheel for dedalus (pyproject.toml) 2024-01-05T02:08:02,207 Configuration: 2024-01-05T02:08:02,207 INCLUDE_MPI = True 2024-01-05T02:08:02,208 INCLUDE_FFTW = True 2024-01-05T02:08:02,209 FFTW_STATIC = False 2024-01-05T02:08:02,209 CYTHON_PROFILE = False 2024-01-05T02:08:02,210 Looking for mpi include path: 2024-01-05T02:08:02,211 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:08:02,212 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:02,212 Looking for mpi library path: 2024-01-05T02:08:02,213 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-05T02:08:02,213 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:02,214 Looking for fftw include path: 2024-01-05T02:08:02,214 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:08:02,215 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:02,216 Looking for fftw library path: 2024-01-05T02:08:02,216 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-05T02:08:02,217 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-05T02:08:02,294 running bdist_wheel 2024-01-05T02:08:02,338 running build 2024-01-05T02:08:02,341 running build_py 2024-01-05T02:08:02,352 creating build 2024-01-05T02:08:02,353 creating build/lib.linux-armv7l-cpython-311 2024-01-05T02:08:02,353 creating build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,355 copying dedalus/dev.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,357 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,359 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,360 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,363 creating build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,364 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,366 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,368 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,370 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,372 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,375 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,377 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,380 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,382 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,384 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,386 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,388 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,390 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,392 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,394 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,396 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,398 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,401 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,402 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,405 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,407 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,409 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,412 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,414 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,416 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,418 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,421 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-311/dedalus/tests 2024-01-05T02:08:02,424 creating build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,425 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,428 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,433 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,436 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,439 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,441 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,443 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,446 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,448 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,452 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,455 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,458 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,461 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,464 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,466 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,468 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,471 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-05T02:08:02,472 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-05T02:08:02,473 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries 2024-01-05T02:08:02,476 creating build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-05T02:08:02,477 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-05T02:08:02,479 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-05T02:08:02,481 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/extras 2024-01-05T02:08:02,484 creating build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,485 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,487 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,489 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,491 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,493 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,495 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,497 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,498 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,500 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,502 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,504 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,505 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,507 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,510 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,511 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,513 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-311/dedalus/tools 2024-01-05T02:08:02,516 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,517 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,519 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,522 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,523 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,525 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,528 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,529 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,531 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,533 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,535 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,537 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,539 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,541 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,543 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/dedalus_sphere 2024-01-05T02:08:02,546 creating build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-05T02:08:02,547 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-311/dedalus/libraries/fftw 2024-01-05T02:08:02,553 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,555 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,562 running build_ext 2024-01-05T02:08:02,568 building 'dedalus.core.transposes' extension 2024-01-05T02:08:02,569 creating build/temp.linux-armv7l-cpython-311 2024-01-05T02:08:02,569 creating build/temp.linux-armv7l-cpython-311/dedalus 2024-01-05T02:08:02,570 creating build/temp.linux-armv7l-cpython-311/dedalus/core 2024-01-05T02:08:02,571 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/numpy/core/include -I/tmp/pip-build-env-014lhban/overlay/local/lib/python3.11/dist-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.11 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-311/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-05T02:08:03,057 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-05T02:08:03,057 1235 | #include "mpi.h" 2024-01-05T02:08:03,058 | ^~~~~~~ 2024-01-05T02:08:03,058 compilation terminated. 2024-01-05T02:08:03,064 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-05T02:08:03,233 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-05T02:08:03,246 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.11/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpppte52gl[/] 2024-01-05T02:08:03,247 [bold magenta]cwd[/]: /tmp/pip-wheel-ut2q25b8/dedalus_8463dc4b4864424ebc89d79913f57174 2024-01-05T02:08:03,248 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-05T02:08:03,250 ERROR: Failed building wheel for dedalus 2024-01-05T02:08:03,252 Failed to build dedalus 2024-01-05T02:08:03,253 ERROR: Failed to build one or more wheels 2024-01-05T02:08:03,255 Exception information: 2024-01-05T02:08:03,255 Traceback (most recent call last): 2024-01-05T02:08:03,255 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-05T02:08:03,255 status = run_func(*args) 2024-01-05T02:08:03,255 ^^^^^^^^^^^^^^^ 2024-01-05T02:08:03,255 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-05T02:08:03,255 return func(self, options, args) 2024-01-05T02:08:03,255 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2024-01-05T02:08:03,255 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-05T02:08:03,255 raise CommandError("Failed to build one or more wheels") 2024-01-05T02:08:03,255 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-05T02:08:03,258 Removed build tracker: '/tmp/pip-build-tracker-kaaph6jr'