2024-01-05T21:11:35,243 Created temporary directory: /tmp/pip-build-tracker-bxaultgb 2024-01-05T21:11:35,245 Initialized build tracking at /tmp/pip-build-tracker-bxaultgb 2024-01-05T21:11:35,245 Created build tracker: /tmp/pip-build-tracker-bxaultgb 2024-01-05T21:11:35,246 Entered build tracker: /tmp/pip-build-tracker-bxaultgb 2024-01-05T21:11:35,246 Created temporary directory: /tmp/pip-wheel-ooc7l1es 2024-01-05T21:11:35,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-ynivulvt 2024-01-05T21:11:35,272 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-05T21:11:35,275 2 location(s) to search for versions of kage-genotyper: 2024-01-05T21:11:35,275 * https://pypi.org/simple/kage-genotyper/ 2024-01-05T21:11:35,275 * https://www.piwheels.org/simple/kage-genotyper/ 2024-01-05T21:11:35,276 Fetching project page and analyzing links: https://pypi.org/simple/kage-genotyper/ 2024-01-05T21:11:35,277 Getting page https://pypi.org/simple/kage-genotyper/ 2024-01-05T21:11:35,278 Found index url https://pypi.org/simple/ 2024-01-05T21:11:35,546 Fetched page https://pypi.org/simple/kage-genotyper/ as application/vnd.pypi.simple.v1+json 2024-01-05T21:11:35,556 Found link https://files.pythonhosted.org/packages/e7/66/016860668992a70bab9c872c5032fbc34e2f9ecc6936b95b4e9a0b0c812b/kage-genotyper-0.0.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.2 2024-01-05T21:11:35,557 Found link https://files.pythonhosted.org/packages/80/ee/e08c95ccb0c401cfb2049e7271acdcb455196900f035e0700f6229d6c25d/kage-genotyper-0.0.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.3 2024-01-05T21:11:35,557 Found link https://files.pythonhosted.org/packages/47/5d/a155072db4e4e73f1a7b0f115f4641172458ef39411234990de2601e453a/kage-genotyper-0.0.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.0.4 2024-01-05T21:11:35,558 Found link 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https://files.pythonhosted.org/packages/a0/05/f5534cac773ba893d3c93012a0150dbf9f8cb535a3b33f1f03957d3dbd69/kage-genotyper-0.1.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.3 2024-01-05T21:11:35,579 Found link https://files.pythonhosted.org/packages/82/aa/9aced1ac4cc86f4bee19188f607e13563fb10b00353cf2dd43468ecf53b8/kage-genotyper-0.1.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.4 2024-01-05T21:11:35,579 Found link https://files.pythonhosted.org/packages/c7/e3/b7c4d3b74ba8925070ce4a3bf43649f3c2307e16f410784948827d60121a/kage-genotyper-0.1.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.5 2024-01-05T21:11:35,580 Found link https://files.pythonhosted.org/packages/03/2a/60bf909f494aa560ab360d944e5a8d50fb3c49e0b8234c66a8707450c700/kage-genotyper-0.1.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.6 2024-01-05T21:11:35,581 Found link 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https://files.pythonhosted.org/packages/39/09/58efe36d13073b7e4e1d0a34ac7d4e5a30c05c6fb99a2e0723b4c7882285/kage-genotyper-0.1.13.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.13 2024-01-05T21:11:35,583 Found link https://files.pythonhosted.org/packages/77/c4/2bc34acb31ab5175cdb7a195a9fe1f59c7795cc859f869c5d5efd5dad759/kage-genotyper-0.1.14.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.1.14 2024-01-05T21:11:35,584 Found link https://files.pythonhosted.org/packages/77/e5/892007364823bbc1ff487614d77afcd1b738dadf40009ee9a7c4baf3dc41/kage-genotyper-0.2.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.0 2024-01-05T21:11:35,585 Found link https://files.pythonhosted.org/packages/c0/22/2af38d12dc8622e10ea42e304ba06fe3655398885f043098ff22a0725652/kage-genotyper-0.2.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.1 2024-01-05T21:11:35,586 Found link https://files.pythonhosted.org/packages/bd/65/426b8d4ed8b16fa400bd19959a26592979c02947830463d8da779476a20c/kage-genotyper-0.2.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.2 2024-01-05T21:11:35,586 Found link https://files.pythonhosted.org/packages/c3/8f/95df6d19af07be70be24557f51402a59aa7ce7e2e6ffa6fb041070c41582/kage-genotyper-0.2.3.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.3 2024-01-05T21:11:35,587 Found link https://files.pythonhosted.org/packages/70/14/3538d6180ab9c9be1eda254b5863c70777e456de977b6225c43910925f15/kage-genotyper-0.2.4.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.4 2024-01-05T21:11:35,588 Found link https://files.pythonhosted.org/packages/1c/a5/c6591ac37f3fc7bdf32a74ce53db483b9b15779fa388d2f133eea500915d/kage-genotyper-0.2.5.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.5 2024-01-05T21:11:35,588 Found link https://files.pythonhosted.org/packages/ca/46/4ff6a1f5155651e33979d6535c2e33e16e16a503099b235238cdb530ba8b/kage-genotyper-0.2.6.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.6 2024-01-05T21:11:35,589 Found link https://files.pythonhosted.org/packages/6c/6d/ad14f41ec3a5c63c35ac4d8b407788a1547d426c3ef80e8867f440cb1d2a/kage-genotyper-0.2.7.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.7 2024-01-05T21:11:35,591 Found link https://files.pythonhosted.org/packages/fb/c1/945240232ad7210eac96e649629c70bfdf07baa2beb559976a78674fc9ec/kage-genotyper-0.2.8.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 0.2.8 2024-01-05T21:11:35,591 Found link https://files.pythonhosted.org/packages/ae/86/64b1d7884b70e1a9c9c08ef4153ea789bc3546eb33619f73784515be155b/kage-genotyper-2.0.0.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.0 2024-01-05T21:11:35,592 Found link https://files.pythonhosted.org/packages/0d/10/8fdfd069366f840cbe478efecf21d70ce092b203ff54a9e156818fa4104c/kage-genotyper-2.0.1.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.1 2024-01-05T21:11:35,593 Found link https://files.pythonhosted.org/packages/97/c7/e23da49e587fee0cc4eda789e1c0f519f07bcdf994f882647800a867b6ab/kage-genotyper-2.0.2.tar.gz (from https://pypi.org/simple/kage-genotyper/), version: 2.0.2 2024-01-05T21:11:35,594 Fetching project page and analyzing links: https://www.piwheels.org/simple/kage-genotyper/ 2024-01-05T21:11:35,595 Getting page https://www.piwheels.org/simple/kage-genotyper/ 2024-01-05T21:11:35,596 Found index url https://www.piwheels.org/simple/ 2024-01-05T21:11:35,787 Fetched page https://www.piwheels.org/simple/kage-genotyper/ as text/html 2024-01-05T21:11:35,801 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.1-py3-none-any.whl#sha256=2837a0144f0061d3fd1e073601e65485b0ae373ea9e751b0fbe3b1289df15164 (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,801 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-2.0.0-py3-none-any.whl#sha256=3018148bbf0c73eb554b210e6d073f4dcdc0cbe2b332742631b509f30ee899a5 (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,802 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.8-py3-none-any.whl#sha256=4b39f939884b9a8d71addf1e118b122decbd1fdd0762017f9b13b1d7d2662e44 (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,803 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.7-py3-none-any.whl#sha256=8b95dcd13302dc1aeb5a90560d02410b2f9917286fa3c664bb9b82b5b3cd4667 (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,803 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.6-py3-none-any.whl#sha256=40ecf95a0cd3bbfd4aed84c5ec136abdc028509b54dfba312d6f4a12ebcb74ff (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,804 Skipping link: No binaries permitted for kage-genotyper: https://www.piwheels.org/simple/kage-genotyper/kage_genotyper-0.2.5-py3-none-any.whl#sha256=f4ad36936c43302464dbf960a90e948e2f98adbb0d47dacb114d8f4867056001 (from https://www.piwheels.org/simple/kage-genotyper/) 2024-01-05T21:11:35,805 Skipping link: No binaries permitted for kage-genotyper: 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2024-01-05T21:11:35,854 Given no hashes to check 1 links for project 'kage-genotyper': discarding no candidates 2024-01-05T21:11:35,872 Collecting kage-genotyper==2.0.2 2024-01-05T21:11:35,874 Created temporary directory: /tmp/pip-unpack-hl6u3ql_ 2024-01-05T21:11:36,093 Downloading kage-genotyper-2.0.2.tar.gz (12.8 MB) 2024-01-05T21:11:39,576 Added kage-genotyper==2.0.2 from https://files.pythonhosted.org/packages/97/c7/e23da49e587fee0cc4eda789e1c0f519f07bcdf994f882647800a867b6ab/kage-genotyper-2.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-bxaultgb' 2024-01-05T21:11:39,577 Running setup.py (path:/tmp/pip-wheel-ooc7l1es/kage-genotyper_32ab915aecaa407ea174334c0f514366/setup.py) egg_info for package kage-genotyper 2024-01-05T21:11:39,578 Created temporary directory: /tmp/pip-pip-egg-info-ia869z4p 2024-01-05T21:11:39,579 Preparing metadata (setup.py): started 2024-01-05T21:11:39,580 Running command python setup.py egg_info 2024-01-05T21:11:40,600 running egg_info 2024-01-05T21:11:40,601 creating /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info 2024-01-05T21:11:40,625 writing /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/PKG-INFO 2024-01-05T21:11:40,629 writing dependency_links to /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/dependency_links.txt 2024-01-05T21:11:40,631 writing entry points to /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/entry_points.txt 2024-01-05T21:11:40,632 writing requirements to /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/requires.txt 2024-01-05T21:11:40,633 writing top-level names to /tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/top_level.txt 2024-01-05T21:11:40,635 writing manifest file '/tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/SOURCES.txt' 2024-01-05T21:11:40,723 reading manifest file '/tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/SOURCES.txt' 2024-01-05T21:11:40,725 adding license file 'LICENSE' 2024-01-05T21:11:40,728 writing manifest file '/tmp/pip-pip-egg-info-ia869z4p/kage_genotyper.egg-info/SOURCES.txt' 2024-01-05T21:11:40,835 Preparing metadata (setup.py): finished with status 'done' 2024-01-05T21:11:40,839 Source in /tmp/pip-wheel-ooc7l1es/kage-genotyper_32ab915aecaa407ea174334c0f514366 has version 2.0.2, which satisfies requirement kage-genotyper==2.0.2 from https://files.pythonhosted.org/packages/97/c7/e23da49e587fee0cc4eda789e1c0f519f07bcdf994f882647800a867b6ab/kage-genotyper-2.0.2.tar.gz 2024-01-05T21:11:40,840 Removed kage-genotyper==2.0.2 from https://files.pythonhosted.org/packages/97/c7/e23da49e587fee0cc4eda789e1c0f519f07bcdf994f882647800a867b6ab/kage-genotyper-2.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-bxaultgb' 2024-01-05T21:11:40,844 Created temporary directory: /tmp/pip-unpack-3u_fsmvt 2024-01-05T21:11:40,845 Created temporary directory: /tmp/pip-unpack-nhzqvnxd 2024-01-05T21:11:40,866 Building wheels for collected packages: kage-genotyper 2024-01-05T21:11:40,871 Created temporary directory: /tmp/pip-wheel-5yk6p05x 2024-01-05T21:11:40,871 Building wheel for kage-genotyper (setup.py): started 2024-01-05T21:11:40,873 Destination directory: /tmp/pip-wheel-5yk6p05x 2024-01-05T21:11:40,874 Running command python setup.py bdist_wheel 2024-01-05T21:11:41,855 running bdist_wheel 2024-01-05T21:11:41,949 running build 2024-01-05T21:11:41,950 running build_py 2024-01-05T21:11:41,976 creating build 2024-01-05T21:11:41,977 creating build/lib 2024-01-05T21:11:41,978 creating build/lib/kage 2024-01-05T21:11:41,979 copying kage/configuration.py -> build/lib/kage 2024-01-05T21:11:41,981 copying kage/io.py -> build/lib/kage 2024-01-05T21:11:41,983 copying kage/variant_filtering.py -> build/lib/kage 2024-01-05T21:11:41,985 copying kage/util.py -> build/lib/kage 2024-01-05T21:11:41,987 copying kage/node_counts.py -> build/lib/kage 2024-01-05T21:11:41,988 copying kage/__init__.py -> build/lib/kage 2024-01-05T21:11:41,990 copying kage/naive_genotyper.py -> build/lib/kage 2024-01-05T21:11:41,992 copying kage/command_line_interface.py -> build/lib/kage 2024-01-05T21:11:41,995 creating build/lib/kage/benchmarking 2024-01-05T21:11:41,996 copying kage/benchmarking/vcf_preprocessing.py -> build/lib/kage/benchmarking 2024-01-05T21:11:41,999 copying kage/benchmarking/__init__.py -> build/lib/kage/benchmarking 2024-01-05T21:11:42,001 creating build/lib/kage/simulation 2024-01-05T21:11:42,002 copying kage/simulation/read_simulation.py -> build/lib/kage/simulation 2024-01-05T21:11:42,004 copying kage/simulation/__init__.py -> build/lib/kage/simulation 2024-01-05T21:11:42,006 copying kage/simulation/simulation.py -> build/lib/kage/simulation 2024-01-05T21:11:42,009 creating build/lib/kage/indexing 2024-01-05T21:11:42,009 copying kage/indexing/path_based_count_model.py -> build/lib/kage/indexing 2024-01-05T21:11:42,012 copying kage/indexing/main.py -> build/lib/kage/indexing 2024-01-05T21:11:42,015 copying kage/indexing/index_bundle.py -> build/lib/kage/indexing 2024-01-05T21:11:42,018 copying kage/indexing/signatures.py -> build/lib/kage/indexing 2024-01-05T21:11:42,235 copying kage/indexing/div.py -> build/lib/kage/indexing 2024-01-05T21:11:42,236 copying kage/indexing/kmer_scoring.py -> build/lib/kage/indexing 2024-01-05T21:11:42,239 copying kage/indexing/modulo_filter.py -> build/lib/kage/indexing 2024-01-05T21:11:42,241 copying kage/indexing/__init__.py -> build/lib/kage/indexing 2024-01-05T21:11:42,242 copying kage/indexing/graph.py -> build/lib/kage/indexing 2024-01-05T21:11:42,244 copying kage/indexing/paths.py -> build/lib/kage/indexing 2024-01-05T21:11:42,247 copying kage/indexing/sparse_haplotype_matrix.py -> build/lib/kage/indexing 2024-01-05T21:11:42,249 copying kage/indexing/path_variant_indexing.py -> build/lib/kage/indexing 2024-01-05T21:11:42,252 copying kage/indexing/tricky_variants.py -> build/lib/kage/indexing 2024-01-05T21:11:42,255 creating build/lib/kage/analysis 2024-01-05T21:11:42,255 copying kage/analysis/analysis.py -> build/lib/kage/analysis 2024-01-05T21:11:42,258 copying kage/analysis/debugging.py -> build/lib/kage/analysis 2024-01-05T21:11:42,260 copying kage/analysis/genotype_accuracy.py -> build/lib/kage/analysis 2024-01-05T21:11:42,263 copying kage/analysis/__init__.py -> build/lib/kage/analysis 2024-01-05T21:11:42,264 copying kage/analysis/variant_kmer_analyser.py -> build/lib/kage/analysis 2024-01-05T21:11:42,267 creating build/lib/kage/models 2024-01-05T21:11:42,268 copying kage/models/sampling_combo_model.py -> build/lib/kage/models 2024-01-05T21:11:42,270 copying kage/models/helper_index_using_duplicate_counts.py -> build/lib/kage/models 2024-01-05T21:11:42,272 copying kage/models/helper_index.py -> build/lib/kage/models 2024-01-05T21:11:42,274 copying kage/models/joint_distribution.py -> build/lib/kage/models 2024-01-05T21:11:42,275 copying kage/models/__init__.py -> build/lib/kage/models 2024-01-05T21:11:42,277 copying kage/models/mapping_model.py -> build/lib/kage/models 2024-01-05T21:11:42,279 copying kage/models/models.py -> build/lib/kage/models 2024-01-05T21:11:42,281 copying kage/models/helper_model.py -> build/lib/kage/models 2024-01-05T21:11:42,284 creating build/lib/kage/preprocessing 2024-01-05T21:11:42,285 copying kage/preprocessing/variants.py -> build/lib/kage/preprocessing 2024-01-05T21:11:42,288 copying kage/preprocessing/__init__.py -> build/lib/kage/preprocessing 2024-01-05T21:11:42,290 creating build/lib/kage/modles 2024-01-05T21:11:42,291 copying kage/modles/__init__.py -> build/lib/kage/modles 2024-01-05T21:11:42,294 creating build/lib/kage/glimpse 2024-01-05T21:11:42,295 copying kage/glimpse/glimpse_wrapper.py -> build/lib/kage/glimpse 2024-01-05T21:11:42,297 copying kage/glimpse/__init__.py -> build/lib/kage/glimpse 2024-01-05T21:11:42,299 creating build/lib/kage/genotyping 2024-01-05T21:11:42,300 copying kage/genotyping/multiallelic.py -> build/lib/kage/genotyping 2024-01-05T21:11:42,301 copying kage/genotyping/combination_model_genotyper.py -> build/lib/kage/genotyping 2024-01-05T21:11:42,303 copying kage/genotyping/__init__.py -> build/lib/kage/genotyping 2024-01-05T21:11:42,337 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2024-01-05T21:11:42,338 !! 2024-01-05T21:11:42,339 ******************************************************************************** 2024-01-05T21:11:42,339 Please avoid running ``setup.py`` directly. 2024-01-05T21:11:42,339 Instead, use pypa/build, pypa/installer or other 2024-01-05T21:11:42,340 standards-based tools. 2024-01-05T21:11:42,341 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2024-01-05T21:11:42,341 ******************************************************************************** 2024-01-05T21:11:42,342 !! 2024-01-05T21:11:42,343 self.initialize_options() 2024-01-05T21:11:42,362 installing to build/bdist.linux-armv7l/wheel 2024-01-05T21:11:42,363 running install 2024-01-05T21:11:42,387 running install_lib 2024-01-05T21:11:42,411 creating build/bdist.linux-armv7l 2024-01-05T21:11:42,412 creating build/bdist.linux-armv7l/wheel 2024-01-05T21:11:42,414 creating build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,415 copying build/lib/kage/configuration.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,417 creating build/bdist.linux-armv7l/wheel/kage/benchmarking 2024-01-05T21:11:42,418 copying build/lib/kage/benchmarking/vcf_preprocessing.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking 2024-01-05T21:11:42,420 copying build/lib/kage/benchmarking/__init__.py -> build/bdist.linux-armv7l/wheel/kage/benchmarking 2024-01-05T21:11:42,422 copying build/lib/kage/io.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,424 copying build/lib/kage/variant_filtering.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,426 creating build/bdist.linux-armv7l/wheel/kage/simulation 2024-01-05T21:11:42,427 copying build/lib/kage/simulation/read_simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2024-01-05T21:11:42,430 copying build/lib/kage/simulation/__init__.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2024-01-05T21:11:42,431 copying build/lib/kage/simulation/simulation.py -> build/bdist.linux-armv7l/wheel/kage/simulation 2024-01-05T21:11:42,434 creating build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,435 copying build/lib/kage/indexing/path_based_count_model.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,438 copying build/lib/kage/indexing/main.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,440 copying build/lib/kage/indexing/index_bundle.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,442 copying build/lib/kage/indexing/signatures.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,445 copying build/lib/kage/indexing/div.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,447 copying build/lib/kage/indexing/kmer_scoring.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,449 copying build/lib/kage/indexing/modulo_filter.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,451 copying build/lib/kage/indexing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,453 copying build/lib/kage/indexing/graph.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,455 copying build/lib/kage/indexing/paths.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,458 copying build/lib/kage/indexing/sparse_haplotype_matrix.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,460 copying build/lib/kage/indexing/path_variant_indexing.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,462 copying build/lib/kage/indexing/tricky_variants.py -> build/bdist.linux-armv7l/wheel/kage/indexing 2024-01-05T21:11:42,465 creating build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,466 copying build/lib/kage/analysis/analysis.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,468 copying build/lib/kage/analysis/debugging.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,470 copying build/lib/kage/analysis/genotype_accuracy.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,473 copying build/lib/kage/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,474 copying build/lib/kage/analysis/variant_kmer_analyser.py -> build/bdist.linux-armv7l/wheel/kage/analysis 2024-01-05T21:11:42,477 creating build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,478 copying build/lib/kage/models/sampling_combo_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,480 copying build/lib/kage/models/helper_index_using_duplicate_counts.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,482 copying build/lib/kage/models/helper_index.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,484 copying build/lib/kage/models/joint_distribution.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,486 copying build/lib/kage/models/__init__.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,487 copying build/lib/kage/models/mapping_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,490 copying build/lib/kage/models/models.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,492 copying build/lib/kage/models/helper_model.py -> build/bdist.linux-armv7l/wheel/kage/models 2024-01-05T21:11:42,495 creating build/bdist.linux-armv7l/wheel/kage/preprocessing 2024-01-05T21:11:42,496 copying build/lib/kage/preprocessing/variants.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing 2024-01-05T21:11:42,499 copying build/lib/kage/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/kage/preprocessing 2024-01-05T21:11:42,501 copying build/lib/kage/util.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,503 copying build/lib/kage/node_counts.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,505 creating build/bdist.linux-armv7l/wheel/kage/modles 2024-01-05T21:11:42,506 copying build/lib/kage/modles/__init__.py -> build/bdist.linux-armv7l/wheel/kage/modles 2024-01-05T21:11:42,508 creating build/bdist.linux-armv7l/wheel/kage/glimpse 2024-01-05T21:11:42,509 copying build/lib/kage/glimpse/glimpse_wrapper.py -> build/bdist.linux-armv7l/wheel/kage/glimpse 2024-01-05T21:11:42,511 copying build/lib/kage/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/kage/glimpse 2024-01-05T21:11:42,513 copying build/lib/kage/__init__.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,515 creating build/bdist.linux-armv7l/wheel/kage/genotyping 2024-01-05T21:11:42,516 copying build/lib/kage/genotyping/multiallelic.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2024-01-05T21:11:42,518 copying build/lib/kage/genotyping/combination_model_genotyper.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2024-01-05T21:11:42,520 copying build/lib/kage/genotyping/__init__.py -> build/bdist.linux-armv7l/wheel/kage/genotyping 2024-01-05T21:11:42,522 copying build/lib/kage/naive_genotyper.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,523 copying build/lib/kage/command_line_interface.py -> build/bdist.linux-armv7l/wheel/kage 2024-01-05T21:11:42,526 running install_egg_info 2024-01-05T21:11:42,586 running egg_info 2024-01-05T21:11:42,610 writing kage_genotyper.egg-info/PKG-INFO 2024-01-05T21:11:42,613 writing dependency_links to kage_genotyper.egg-info/dependency_links.txt 2024-01-05T21:11:42,614 writing entry points to kage_genotyper.egg-info/entry_points.txt 2024-01-05T21:11:42,615 writing requirements to kage_genotyper.egg-info/requires.txt 2024-01-05T21:11:42,617 writing top-level names to kage_genotyper.egg-info/top_level.txt 2024-01-05T21:11:42,651 reading manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2024-01-05T21:11:42,658 adding license file 'LICENSE' 2024-01-05T21:11:42,663 writing manifest file 'kage_genotyper.egg-info/SOURCES.txt' 2024-01-05T21:11:42,664 Copying kage_genotyper.egg-info to build/bdist.linux-armv7l/wheel/kage_genotyper-2.0.2-py3.11.egg-info 2024-01-05T21:11:42,677 running install_scripts 2024-01-05T21:11:42,696 creating build/bdist.linux-armv7l/wheel/kage_genotyper-2.0.2.dist-info/WHEEL 2024-01-05T21:11:42,698 creating '/tmp/pip-wheel-5yk6p05x/kage_genotyper-2.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-05T21:11:42,700 adding 'kage/__init__.py' 2024-01-05T21:11:42,703 adding 'kage/command_line_interface.py' 2024-01-05T21:11:42,704 adding 'kage/configuration.py' 2024-01-05T21:11:42,706 adding 'kage/io.py' 2024-01-05T21:11:42,707 adding 'kage/naive_genotyper.py' 2024-01-05T21:11:42,708 adding 'kage/node_counts.py' 2024-01-05T21:11:42,710 adding 'kage/util.py' 2024-01-05T21:11:42,711 adding 'kage/variant_filtering.py' 2024-01-05T21:11:42,713 adding 'kage/analysis/__init__.py' 2024-01-05T21:11:42,715 adding 'kage/analysis/analysis.py' 2024-01-05T21:11:42,717 adding 'kage/analysis/debugging.py' 2024-01-05T21:11:42,720 adding 'kage/analysis/genotype_accuracy.py' 2024-01-05T21:11:42,721 adding 'kage/analysis/variant_kmer_analyser.py' 2024-01-05T21:11:42,723 adding 'kage/benchmarking/__init__.py' 2024-01-05T21:11:42,724 adding 'kage/benchmarking/vcf_preprocessing.py' 2024-01-05T21:11:42,726 adding 'kage/genotyping/__init__.py' 2024-01-05T21:11:42,728 adding 'kage/genotyping/combination_model_genotyper.py' 2024-01-05T21:11:42,729 adding 'kage/genotyping/multiallelic.py' 2024-01-05T21:11:42,731 adding 'kage/glimpse/__init__.py' 2024-01-05T21:11:42,732 adding 'kage/glimpse/glimpse_wrapper.py' 2024-01-05T21:11:42,734 adding 'kage/indexing/__init__.py' 2024-01-05T21:11:42,735 adding 'kage/indexing/div.py' 2024-01-05T21:11:42,737 adding 'kage/indexing/graph.py' 2024-01-05T21:11:42,739 adding 'kage/indexing/index_bundle.py' 2024-01-05T21:11:42,740 adding 'kage/indexing/kmer_scoring.py' 2024-01-05T21:11:42,743 adding 'kage/indexing/main.py' 2024-01-05T21:11:42,744 adding 'kage/indexing/modulo_filter.py' 2024-01-05T21:11:42,746 adding 'kage/indexing/path_based_count_model.py' 2024-01-05T21:11:42,748 adding 'kage/indexing/path_variant_indexing.py' 2024-01-05T21:11:42,752 adding 'kage/indexing/paths.py' 2024-01-05T21:11:42,758 adding 'kage/indexing/signatures.py' 2024-01-05T21:11:42,760 adding 'kage/indexing/sparse_haplotype_matrix.py' 2024-01-05T21:11:42,762 adding 'kage/indexing/tricky_variants.py' 2024-01-05T21:11:42,763 adding 'kage/models/__init__.py' 2024-01-05T21:11:42,765 adding 'kage/models/helper_index.py' 2024-01-05T21:11:42,766 adding 'kage/models/helper_index_using_duplicate_counts.py' 2024-01-05T21:11:42,768 adding 'kage/models/helper_model.py' 2024-01-05T21:11:42,769 adding 'kage/models/joint_distribution.py' 2024-01-05T21:11:42,771 adding 'kage/models/mapping_model.py' 2024-01-05T21:11:42,772 adding 'kage/models/models.py' 2024-01-05T21:11:42,776 adding 'kage/models/sampling_combo_model.py' 2024-01-05T21:11:42,778 adding 'kage/modles/__init__.py' 2024-01-05T21:11:42,779 adding 'kage/preprocessing/__init__.py' 2024-01-05T21:11:42,783 adding 'kage/preprocessing/variants.py' 2024-01-05T21:11:42,785 adding 'kage/simulation/__init__.py' 2024-01-05T21:11:42,787 adding 'kage/simulation/read_simulation.py' 2024-01-05T21:11:42,789 adding 'kage/simulation/simulation.py' 2024-01-05T21:11:42,796 adding 'kage_genotyper-2.0.2.dist-info/LICENSE' 2024-01-05T21:11:42,798 adding 'kage_genotyper-2.0.2.dist-info/METADATA' 2024-01-05T21:11:42,798 adding 'kage_genotyper-2.0.2.dist-info/WHEEL' 2024-01-05T21:11:42,799 adding 'kage_genotyper-2.0.2.dist-info/entry_points.txt' 2024-01-05T21:11:42,800 adding 'kage_genotyper-2.0.2.dist-info/top_level.txt' 2024-01-05T21:11:42,801 adding 'kage_genotyper-2.0.2.dist-info/RECORD' 2024-01-05T21:11:42,805 removing build/bdist.linux-armv7l/wheel 2024-01-05T21:11:42,930 Building wheel for kage-genotyper (setup.py): finished with status 'done' 2024-01-05T21:11:42,933 Created wheel for kage-genotyper: filename=kage_genotyper-2.0.2-py3-none-any.whl size=122289 sha256=73248dc4ec9926544fb7143ef9243d8c7304ff08d9d0486cf93baa9f05ced5e7 2024-01-05T21:11:42,934 Stored in directory: /tmp/pip-ephem-wheel-cache-ynivulvt/wheels/bb/88/35/60d15cb3af9b365fe6f6bc54755e36624dfd5558991021782e 2024-01-05T21:11:42,946 Successfully built kage-genotyper 2024-01-05T21:11:42,953 Removed build tracker: '/tmp/pip-build-tracker-bxaultgb'