2024-01-05T21:12:24,001 Created temporary directory: /tmp/pip-build-tracker-ajkv705c
2024-01-05T21:12:24,002 Initialized build tracking at /tmp/pip-build-tracker-ajkv705c
2024-01-05T21:12:24,003 Created build tracker: /tmp/pip-build-tracker-ajkv705c
2024-01-05T21:12:24,003 Entered build tracker: /tmp/pip-build-tracker-ajkv705c
2024-01-05T21:12:24,004 Created temporary directory: /tmp/pip-wheel-48fjg9te
2024-01-05T21:12:24,007 Created temporary directory: /tmp/pip-ephem-wheel-cache-hv_cw5xw
2024-01-05T21:12:24,030 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-05T21:12:24,033 2 location(s) to search for versions of pygenetic-code:
2024-01-05T21:12:24,033 * https://pypi.org/simple/pygenetic-code/
2024-01-05T21:12:24,033 * https://www.piwheels.org/simple/pygenetic-code/
2024-01-05T21:12:24,034 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/
2024-01-05T21:12:24,035 Getting page https://pypi.org/simple/pygenetic-code/
2024-01-05T21:12:24,036 Found index url https://pypi.org/simple/
2024-01-05T21:12:24,172 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json
2024-01-05T21:12:24,175   Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1
2024-01-05T21:12:24,175   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-05T21:12:24,176   Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12
2024-01-05T21:12:24,177   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-05T21:12:24,177   Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13
2024-01-05T21:12:24,178   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-05T21:12:24,179   Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14
2024-01-05T21:12:24,179   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-05T21:12:24,180   Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0
2024-01-05T21:12:24,181   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-05T21:12:24,181   Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0
2024-01-05T21:12:24,182 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/
2024-01-05T21:12:24,183 Getting page https://www.piwheels.org/simple/pygenetic-code/
2024-01-05T21:12:24,185 Found index url https://www.piwheels.org/simple/
2024-01-05T21:12:24,338 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html
2024-01-05T21:12:24,339   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-05T21:12:24,340   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-05T21:12:24,340 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/
2024-01-05T21:12:24,341 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/
2024-01-05T21:12:24,360 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates
2024-01-05T21:12:24,377 Collecting pygenetic-code==0.14
2024-01-05T21:12:24,380   Created temporary directory: /tmp/pip-unpack-2ll09pgl
2024-01-05T21:12:24,592   Downloading pygenetic_code-0.14.tar.gz (65 kB)
2024-01-05T21:12:24,719   Added pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz to build tracker '/tmp/pip-build-tracker-ajkv705c'
2024-01-05T21:12:24,722   Created temporary directory: /tmp/pip-build-env-_m58jl1b
2024-01-05T21:12:24,727   Installing build dependencies: started
2024-01-05T21:12:24,728   Running command pip subprocess to install build dependencies
2024-01-05T21:12:25,868   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-05T21:12:26,390   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-05T21:12:26,813   Collecting scikit-build-core
2024-01-05T21:12:26,828     Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB)
2024-01-05T21:12:27,110   Collecting packaging>=20.9 (from scikit-build-core)
2024-01-05T21:12:27,124     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-05T21:12:29,470   Installing collected packages: packaging, scikit-build-core
2024-01-05T21:12:30,061   Successfully installed packaging-23.2 scikit-build-core-0.7.1

2024-01-05T21:12:30,344   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-05T21:12:30,345   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-05T21:12:30,581   Installing build dependencies: finished with status 'done'
2024-01-05T21:12:30,584   Getting requirements to build wheel: started
2024-01-05T21:12:30,585   Running command Getting requirements to build wheel
2024-01-05T21:12:30,997   Getting requirements to build wheel: finished with status 'done'
2024-01-05T21:12:31,012   Installing backend dependencies: started
2024-01-05T21:12:31,013   Running command pip subprocess to install backend dependencies
2024-01-05T21:12:32,165   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-05T21:12:32,707   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-05T21:12:33,141   Collecting pyproject_metadata
2024-01-05T21:12:33,155     Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB)
2024-01-05T21:12:33,253   Collecting pathspec
2024-01-05T21:12:33,268     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB)
2024-01-05T21:12:33,446   Collecting packaging>=19.0 (from pyproject_metadata)
2024-01-05T21:12:33,460     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-05T21:12:35,938   Installing collected packages: pathspec, packaging, pyproject_metadata
2024-01-05T21:12:36,230   Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1

2024-01-05T21:12:36,510   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-05T21:12:36,511   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-05T21:12:36,741   Installing backend dependencies: finished with status 'done'
2024-01-05T21:12:36,743   Created temporary directory: /tmp/pip-modern-metadata-84q8vt41
2024-01-05T21:12:36,745   Preparing metadata (pyproject.toml): started
2024-01-05T21:12:36,746   Running command Preparing metadata (pyproject.toml)
2024-01-05T21:12:37,246   *** scikit-build-core 0.7.1 using CMake 3.25.1 (metadata_wheel)
2024-01-05T21:12:37,334   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-05T21:12:37,339   Source in /tmp/pip-wheel-48fjg9te/pygenetic-code_8188786724d84fb78b915432a1abfe14 has version 0.14, which satisfies requirement pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz
2024-01-05T21:12:37,339   Removed pygenetic-code==0.14 from https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz from build tracker '/tmp/pip-build-tracker-ajkv705c'
2024-01-05T21:12:37,343 Created temporary directory: /tmp/pip-unpack-rhjkndhd
2024-01-05T21:12:37,344 Created temporary directory: /tmp/pip-unpack-9j20ihdk
2024-01-05T21:12:37,347 Building wheels for collected packages: pygenetic-code
2024-01-05T21:12:37,351   Created temporary directory: /tmp/pip-wheel-x_qqq44_
2024-01-05T21:12:37,351   Destination directory: /tmp/pip-wheel-x_qqq44_
2024-01-05T21:12:37,354   Building wheel for pygenetic-code (pyproject.toml): started
2024-01-05T21:12:37,355   Running command Building wheel for pygenetic-code (pyproject.toml)
2024-01-05T21:12:37,845   *** scikit-build-core 0.7.1 using CMake 3.25.1 (wheel)
2024-01-05T21:12:37,866   *** Configuring CMake...
2024-01-05T21:12:37,963   loading initial cache file /tmp/tmps51f770i/build/CMakeInit.txt
2024-01-05T21:12:38,241   -- The C compiler identification is GNU 12.2.0
2024-01-05T21:12:38,295   -- Detecting C compiler ABI info
2024-01-05T21:12:38,552   -- Detecting C compiler ABI info - done
2024-01-05T21:12:38,590   -- Check for working C compiler: /usr/bin/cc - skipped
2024-01-05T21:12:38,592   -- Detecting C compile features
2024-01-05T21:12:38,594   -- Detecting C compile features - done
2024-01-05T21:12:39,298   -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module
2024-01-05T21:12:39,353   -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
2024-01-05T21:12:39,362   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2024-01-05T21:12:39,695   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
2024-01-05T21:12:39,700   -- Found Threads: TRUE
2024-01-05T21:12:39,706   -- Configuring done
2024-01-05T21:12:39,731   -- Generating done
2024-01-05T21:12:39,747   -- Build files have been written to: /tmp/tmps51f770i/build
2024-01-05T21:12:39,757   *** Building project with Ninja...
2024-01-05T21:12:40,141   [1/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o
2024-01-05T21:12:40,156   [2/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o
2024-01-05T21:12:40,424   [3/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o
2024-01-05T21:12:40,562   [4/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o
2024-01-05T21:12:40,785   [5/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o
2024-01-05T21:12:40,902   [6/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o
2024-01-05T21:12:40,921   [7/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o
2024-01-05T21:12:40,923   [8/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o
2024-01-05T21:12:41,033   [9/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o
2024-01-05T21:12:41,046   [10/11] Linking C shared module PyGeneticCode.cpython-311-arm-linux-gnueabihf.so
2024-01-05T21:12:41,144   [11/11] Linking C executable get_orfs
2024-01-05T21:12:41,149   *** Installing project into wheel...
2024-01-05T21:12:41,188   -- Install configuration: "Release"
2024-01-05T21:12:41,190   -- Installing: /tmp/tmps51f770i/wheel/platlib/./PyGeneticCode.cpython-311-arm-linux-gnueabihf.so
2024-01-05T21:12:41,211   *** Making wheel...
2024-01-05T21:12:41,316   *** Created pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl...
2024-01-05T21:12:41,373   Building wheel for pygenetic-code (pyproject.toml): finished with status 'done'
2024-01-05T21:12:41,378   Created wheel for pygenetic-code: filename=pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl size=20784 sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6
2024-01-05T21:12:41,379   Stored in directory: /tmp/pip-ephem-wheel-cache-hv_cw5xw/wheels/88/45/92/a58d1053b1d86ffd8dcf30a09bbe95870f295624fdd90d6ffe
2024-01-05T21:12:41,389 Successfully built pygenetic-code
2024-01-05T21:12:41,393 Removed build tracker: '/tmp/pip-build-tracker-ajkv705c'