2024-01-06T01:14:24,986 Created temporary directory: /tmp/pip-build-tracker-ncdez5m5
2024-01-06T01:14:24,987 Initialized build tracking at /tmp/pip-build-tracker-ncdez5m5
2024-01-06T01:14:24,988 Created build tracker: /tmp/pip-build-tracker-ncdez5m5
2024-01-06T01:14:24,988 Entered build tracker: /tmp/pip-build-tracker-ncdez5m5
2024-01-06T01:14:24,988 Created temporary directory: /tmp/pip-wheel-raqmtpr6
2024-01-06T01:14:24,992 Created temporary directory: /tmp/pip-ephem-wheel-cache-ynsb2ndr
2024-01-06T01:14:25,016 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T01:14:25,019 2 location(s) to search for versions of mdanalysis:
2024-01-06T01:14:25,019 * https://pypi.org/simple/mdanalysis/
2024-01-06T01:14:25,019 * https://www.piwheels.org/simple/mdanalysis/
2024-01-06T01:14:25,020 Fetching project page and analyzing links: https://pypi.org/simple/mdanalysis/
2024-01-06T01:14:25,020 Getting page https://pypi.org/simple/mdanalysis/
2024-01-06T01:14:25,022 Found index url https://pypi.org/simple/
2024-01-06T01:14:25,074 Fetched page https://pypi.org/simple/mdanalysis/ as application/vnd.pypi.simple.v1+json
2024-01-06T01:14:25,107   Found link https://files.pythonhosted.org/packages/97/94/fd5a74e25fba58cfb514dc39ef4717baa392057503d6c38897f886b2c0c6/MDAnalysis-0.7.6.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.7.6
2024-01-06T01:14:25,107   Found link https://files.pythonhosted.org/packages/9d/32/36e44fd1b946331bd72c7cc8806dd2b37f597a49ac7ccfe2a64ad91e59f7/MDAnalysis-0.8.0rc2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc2
2024-01-06T01:14:25,107   Found link https://files.pythonhosted.org/packages/d9/c4/27ff9dcd35aeef52f41f01a6eff0328eda8a5fa6dfa8097daa9ff70dcdf8/MDAnalysis-0.8.0rc4.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0rc4
2024-01-06T01:14:25,108   Found link https://files.pythonhosted.org/packages/35/04/425a87220983514ef06f87cd98f54db0a84eed5bec9dfd4b27b6799ae99e/MDAnalysis-0.8.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.0
2024-01-06T01:14:25,108   Found link https://files.pythonhosted.org/packages/7d/39/0afea6f9c2cb10259479800c3b8496c59ecdab8019d5c0cf868729db4c91/MDAnalysis-0.8.1rc1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1rc1
2024-01-06T01:14:25,108   Found link https://files.pythonhosted.org/packages/9b/45/5cfc731f70af562c860d5b79329980b8b380dd8e283847c950c1f7af8d4c/MDAnalysis-0.8.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.8.1
2024-01-06T01:14:25,108   Found link https://files.pythonhosted.org/packages/b5/f0/a3d1acd3fedafd4b56f3cc8f880acb7f7f0f1c68c46121b4c180975435bb/MDAnalysis-0.9.0-dev.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0-dev
2024-01-06T01:14:25,109   Found link https://files.pythonhosted.org/packages/3b/1a/3bd08be00e453a29b6bcbb3320bb91619539eef69ab5ddef46e4b477b34d/MDAnalysis-0.9.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.0
2024-01-06T01:14:25,109   Found link https://files.pythonhosted.org/packages/e5/28/dcafeb58175edede7e4393d5ccfeafc77c3ca8eac6dd2f14d3919e9d4c0c/MDAnalysis-0.9.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.1
2024-01-06T01:14:25,109   Found link https://files.pythonhosted.org/packages/4e/59/72545bc442ee0f6a45cafbd3b0e99add0aca51cbbbe3a882cc930f993306/MDAnalysis-0.9.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.9.2
2024-01-06T01:14:25,110   Found link https://files.pythonhosted.org/packages/82/db/8d468530d1a4834031166fcd9fb754a13e3fd5cc65ee09970ec57c9948cb/MDAnalysis-0.10.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.10.0
2024-01-06T01:14:25,110   Found link https://files.pythonhosted.org/packages/18/80/e6a5502a43f2ce2c432e08a9b404febc46fd403fb5e4b13ddc429f676fd7/MDAnalysis-0.11.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.11.0
2024-01-06T01:14:25,110   Found link https://files.pythonhosted.org/packages/66/77/d666034a559dc75a0cc485345f3058b45b8b067a858adb009b6fae0bcefc/MDAnalysis-0.12.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.12.1
2024-01-06T01:14:25,111   Found link https://files.pythonhosted.org/packages/78/33/704a708797267b35bfe27cc40e83eedabad62c7bb143babbc728ee285082/MDAnalysis-0.13.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.13.0
2024-01-06T01:14:25,111   Found link https://files.pythonhosted.org/packages/11/4c/1b683b1448f14e73f8a45981e27689ca694d5f1106e0453145f8619ffc0c/MDAnalysis-0.14.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.14.0
2024-01-06T01:14:25,111   Found link https://files.pythonhosted.org/packages/9f/56/a4cae14e45aa893a3578905a97e17a325d663e424736366adbc134e72dce/MDAnalysis-0.15.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.15.0
2024-01-06T01:14:25,111   Found link https://files.pythonhosted.org/packages/55/bb/32c3dbd8e92b661a98839a50bd3185d29949afe4618fc1a846e42bad0ebf/MDAnalysis-0.16.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.0
2024-01-06T01:14:25,112   Found link https://files.pythonhosted.org/packages/5f/68/7e7ce717700411e25821100a3bc3d31866ef7abee7e282736f9e0635fef7/MDAnalysis-0.16.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.1
2024-01-06T01:14:25,112   Found link https://files.pythonhosted.org/packages/ae/d5/07c38db64a6bd9bcec03caea8e07137bb2e571ce2bd145f9804727dfc2a5/MDAnalysis-0.16.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.16.2
2024-01-06T01:14:25,112   Found link https://files.pythonhosted.org/packages/91/e0/b12ee57016dffcf8da1f5651745ab981a09bc9e51519b6fa752a1a9a6d0f/MDAnalysis-0.17.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.17.0
2024-01-06T01:14:25,112   Found link https://files.pythonhosted.org/packages/17/44/e9aff78fc88f6b8ac56b7626f3c83ed3c53f723b3f756d4c211ebd5add74/MDAnalysis-0.18.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.18.0
2024-01-06T01:14:25,113   Found link https://files.pythonhosted.org/packages/6e/30/a2b4339369e252bf22dc8d1e732870bf88c33a73e4f5e73788c1a65b25a3/MDAnalysis-0.19.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.0
2024-01-06T01:14:25,113   Found link https://files.pythonhosted.org/packages/1c/24/b03a9bf48a1703b1ec31c34585aab123ca73e7778155ac3d5301a564fde6/MDAnalysis-0.19.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.1
2024-01-06T01:14:25,113   Found link https://files.pythonhosted.org/packages/be/72/6c2f9fcd842c9a50315ac93c4079b3f70735c6125fe903d04fb68a6e616a/MDAnalysis-0.19.2.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.19.2
2024-01-06T01:14:25,114   Found link https://files.pythonhosted.org/packages/b8/49/a0470dda3837aa4c42a7d2e69a4aaa1646ce2aeffe686f6887666f265b43/MDAnalysis-0.20.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.0
2024-01-06T01:14:25,114   Found link https://files.pythonhosted.org/packages/83/4b/97c2df212f1eee47144648aa0e0da1a9022eab74d3fc1fbaf2767734de3d/MDAnalysis-0.20.1.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 0.20.1
2024-01-06T01:14:25,114   Found link https://files.pythonhosted.org/packages/c9/ae/11905971cc6cdb436bff040270f58fb3fc54ef77aea2ce2dfc269129f74e/MDAnalysis-1.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 1.0.0
2024-01-06T01:14:25,115   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2024-01-06T01:14:25,115   Skipping link: 1.0.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/9e/19/1d32ded1891605facf6faf6e0de4ff6bd33db3f7983d84cfc10074363990/MDAnalysis-1.0.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2024-01-06T01:14:25,116   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,116   Skipping link: 1.1.0 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/0f/5a/3f34615abbe7c7758847636167d0caad7bb428c3950da64e7a3003b2c6fc/MDAnalysis-1.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,117   Link requires a different Python (3.9.2 not in: '>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9'): https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,117   Skipping link: 1.1.1 Requires-Python >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9: https://files.pythonhosted.org/packages/43/64/5fc4d327f242130f983b9a1ded4a406191385370dbc55a7be99f8ead126d/MDAnalysis-1.1.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,117   Found link https://files.pythonhosted.org/packages/55/d1/9e302a51bdf6b3d0b7045c20b42203ad8ad20bf2103e8c19db2da868c6e7/MDAnalysis-2.0.0b0.tar.gz (from https://pypi.org/simple/mdanalysis/), version: 2.0.0b0
2024-01-06T01:14:25,118   Found link https://files.pythonhosted.org/packages/bf/a2/5371b04ff9009b7c33e2e211bd622f961d30ccc47cb45b579f314572dfee/MDAnalysis-2.0.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.6), version: 2.0.0
2024-01-06T01:14:25,118   Found link https://files.pythonhosted.org/packages/fd/5a/ff83875f292645f916cc3df339ce45b9f23a06183da51638efb6c593d2e6/MDAnalysis-2.1.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.7), version: 2.1.0
2024-01-06T01:14:25,119   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/e6/70ff5c7854cde5b6506cfd017f1b8271cb58f1d23f0d2e92b2119a5a2ab8/MDAnalysis-2.2.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,119   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/dd/91/227cddc28727e6d5ba1671f46657c9affe449d4259f9e598af74d1e878ae/MDAnalysis-2.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,119   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/1d/e7355508ddd8254f4d67cae78675b48cf1fb0d91480b1ef6f836afb8d7fa/MDAnalysis-2.2.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,119   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/d7/e97e9ddf0dbc048765a02f2d16d09f62814ff12ab26d78ca00ee5ca5e21f/MDAnalysis-2.2.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/07/a888f3fe052fb83ef68491a4f9e818bcf37e499492a206a3bd8e74f713bc/MDAnalysis-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bc/c2/e8ba8d35609854287ec30cdb80a79e8de33f1cd88fd05efd40bdb705b142/MDAnalysis-2.2.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/17/0f/c96e22c0487dc4758d6cb895c0707c12e359b9e48d5022f7316df42f8c84/MDAnalysis-2.2.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/50/d9/af23d161bc9c50678f955d802b8cb1ab624e715ed7d86e8e14f86e4b8f80/MDAnalysis-2.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,120   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/5c/464d58a27ce0e2b0f010b1c65d0b4149256a7c470f5076beee1928e5e9a9/MDAnalysis-2.2.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,121   Found link https://files.pythonhosted.org/packages/5b/73/a077ff42d0cd88c5d3d6320fb156811cf67b28b5ea09a3c800e31af84b9b/MDAnalysis-2.2.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.2.0
2024-01-06T01:14:25,121   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/2f/b256ebf5f841f7db75f882fcd40a4260fe5b0f58a005ec80b5b6a06d00eb/MDAnalysis-2.3.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,121   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bd/3f/a2671e82dd0cce8ba6989ab7a2ca7b41caf030c060826e51f755db342ba7/MDAnalysis-2.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/49/ee/ec90cb066842d53783b8ee5b64ff6e53516072c248e175959d0a8fc7bf22/MDAnalysis-2.3.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/34/53/4b049681653aff30fa7f071a2aef6a842efe5c1f17d5852c0650517779c9/MDAnalysis-2.3.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/92/13/6e132a997503ecc40413196317a6bd8698ba503a7fc0af766af94b441da7/MDAnalysis-2.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/87/89/cf077bb830fecea88bafb1496dce463292195e957560f50853010ff30337/MDAnalysis-2.3.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,122   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/13/f2f10cb68c696fe39700c6efc44ac3d4e3e0700dcf53e38057f4a659183b/MDAnalysis-2.3.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/df/01/07823d486611f6ab2a71b6a378554e95b4e804eb59f00f196db0f54a014d/MDAnalysis-2.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,123   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f3/12/1ca45a5c081c74219a3de9d0886a164cbcd22205f628eb7c9dd6cf2b83e8/MDAnalysis-2.3.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,123   Found link https://files.pythonhosted.org/packages/30/c2/f2508b8e57e164eacb29af064eb633861515fdb26b641fb13da24dd56c13/MDAnalysis-2.3.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.3.0
2024-01-06T01:14:25,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/eb/37ec700b4b4ab96f9e7e2e4d6e00fc5eac5ca4a93108ae372b68a7400e36/MDAnalysis-2.4.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/21/f8/975a66519b62a477edcc5478f9e13cba80b360e274f70c74c808f52dcacb/MDAnalysis-2.4.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/6e/f8361e40f161ea078c3a0d8f14e7934c02ddb2e6bb22d6645f927ccb2b0a/MDAnalysis-2.4.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/42/61/dcfeec3752842e387baf268ba2ac21d3b7af30a2fd79cc133d34d545f84d/MDAnalysis-2.4.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,124   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7e/b8/d37658555ff36a7bb6e934d017d6892be5f244d1b978b4b3afe78b7ce70c/MDAnalysis-2.4.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/33/71/89f035c3610952f590e833c06e95ebc951ee8b38ec15fa3a9b16dbf03ac5/MDAnalysis-2.4.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/75/26/21dbc3d45af119b4f62a26a6da01d26974bfff38d31ce28fda1c4dafd2e1/MDAnalysis-2.4.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c0/ea/59497208df61454b914456144adad561b8a2949b62dfc7016f979661556c/MDAnalysis-2.4.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/14/7d169a6807b2a80430e56df3d8a365fd77472666eca2699a406229e31a30/MDAnalysis-2.4.0-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,125   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/96/9d/08c32ba004d58c9c9b9113cb5026ec4f4787b5cbe909b35ac7fedde50582/MDAnalysis-2.4.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,126   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/98/8d/27b01addb197cd266414763403e88bbaaf2c4f3afa457a5d0f223d2cabbc/MDAnalysis-2.4.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,126   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ac/19/a4a8d5000be7bcadf20b6150731d2aab5e0842e6313c7b2c7b4d121e7ca6/MDAnalysis-2.4.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,126   Found link https://files.pythonhosted.org/packages/a9/b0/67c19de6f80f4d0b2b465b3d5f94d347ce0d200d7da6ed7d9d91b712db4d/MDAnalysis-2.4.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.0
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2024-01-06T01:14:25,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9b/91/59b0303d555fe946144daeeb3484f8dae716ae78c4105d40647d83bda678/MDAnalysis-2.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ba/9d/5f2429ee496079a2969b9b03850ab5fd5f5be242119b088855fd49f6f6e6/MDAnalysis-2.4.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/9d/ae/3ae3b51a0adb99099572052b05e6202efc2f1a02795ed8f9de5b2b0ef154/MDAnalysis-2.4.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,127   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/6e/b396db627091d47b6f224f02cb08739c8a8ef697ee9949f3d4be81cc8ddf/MDAnalysis-2.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/1e/a7dcf4f55b7dd624edaa4fa6b47d202fd3884c5b73ce13ac81fdaee0339b/MDAnalysis-2.4.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c8/e5/1f68f743a1ad1b9a09d2047cc55c6565e5c835c2a444686e8458f5dac831/MDAnalysis-2.4.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8a/3d/34bc8f592d832ec464e427ecf09c62898a128a41c3f1ae142a1d9f9f2646/MDAnalysis-2.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a4/3f/c3961c791f4ab6128fbde66d5829b53d8e89a67ac3d4c23850b58c267206/MDAnalysis-2.4.1-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,128   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3d/59/1a669cb57701c883c0b2e36742fd5d7a250a71fc24e369c57db71496481f/MDAnalysis-2.4.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,129   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/64/3f/4a0d22c2b5bad72be6c07c31c6e9e870e6b3a50142edc97962830bbe22ad/MDAnalysis-2.4.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,129   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/d8/e99fcc0339181b0ffe3fac620f884241bd502bb392696e2429984c3ea81d/MDAnalysis-2.4.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,129   Found link https://files.pythonhosted.org/packages/8f/c0/eba86324ca52fe66db629a4d805729ad8ac3364e3adad532c063b52b7051/MDAnalysis-2.4.1.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.1
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2024-01-06T01:14:25,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/69/c7/3dfe97658982390bbf93cf97f4aabb22025d2956bcd82b410e8c1831dfac/MDAnalysis-2.4.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/73/74/abcb7c91e47f350db0268c2058f079c937bb2f337d73b62ca3b8dea4642e/MDAnalysis-2.4.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f1/34/7eedce6129f71fa38fbf9d7fe3a8f366ddee3142afb07113598bf2b66d81/MDAnalysis-2.4.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,130   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ee/40/20322a888419cc4aeaafa552c51c97c666a46e69c0d130dc5744ec04ae58/MDAnalysis-2.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8b/65/c72765a2a6c73b8e03e114cf7e1661c28df3049adc42e8c75838b48ca083/MDAnalysis-2.4.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/57/eb/504c7f70f9d10d54ce9227df3c71b128b7a15945c525ad1604a99e654973/MDAnalysis-2.4.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/83/84/1fa84dc9f427b8200444b1921eaf6739d9309203ffe8851a0c0e9236acb7/MDAnalysis-2.4.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/44/7f/4e2ae6b5207f9782cfff053f3939433c62ef97e624bf8a71c07411d015e9/MDAnalysis-2.4.2-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,131   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/9a/8e6cdd8c6da04926bbaea76877b9b17082b77db742a82074b2c6dfb85e99/MDAnalysis-2.4.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,132   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/19/cc/840974bc7109839cdef50cc049336cefb2a4acc44f68913eec5f0d4db458/MDAnalysis-2.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,132   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/89/37/ee29c83d622e3d55a2e2936d70cf3f3d74beaf28d5d5747385e2f9149ec8/MDAnalysis-2.4.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,132   Found link https://files.pythonhosted.org/packages/7d/6b/f0ea2ab44ed0a2448737d779e02d3ae719c186dc9e3ce4cd0d75b4026dcc/MDAnalysis-2.4.2.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8), version: 2.4.2
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2024-01-06T01:14:25,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/bb/e3/5c3f39b1d9eb8d583d9c1e6284283895e0cd530bf444512a462637f65918/MDAnalysis-2.4.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/da/23/33758010c6a4a39f1d7548da0760e89447a67a52f65ca44fe8c61739f2ec/MDAnalysis-2.4.3-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/0a/ea/4d2009e7a20642050da1bfbb61b96153961087c71cb41f60c0d0309a0e9f/MDAnalysis-2.4.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,133   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/db/bf/5e26758e34fd7573d1f1437664009c4940fbe62e89b372640576b7c00edc/MDAnalysis-2.4.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/af/b3/b906d3a800e414049e88d84819ac93fb790ee3d9ef7b9561a1fec97910f4/MDAnalysis-2.4.3-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/4c/37/fbd81452243dffbda76b234e5830cd44be85efe97d0b1839b0a7378a36d2/MDAnalysis-2.4.3-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f7/75/05c14b9784df8b7e06d270089ea9438323cd781d6897d870e13347a1d497/MDAnalysis-2.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/eb/74/ab6867e602e5fc30f21ee6fe8669f42c4f47b8b7cc0b5686cad60a2ed7be/MDAnalysis-2.4.3-cp38-cp38-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,134   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/91/be/9896583934126d2207d79c9fd1bd19918b1652fafb2d09489e7306c5cbc6/MDAnalysis-2.4.3-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,135   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/27/5c/17e47fa60624834e70c34f4625cd6105d621fc055bc59339173e71450a6e/MDAnalysis-2.4.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,135   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/a9/1851961fb6f7a64d837de8ecbd4548c42e4066b303ac095498169f8c64e9/MDAnalysis-2.4.3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.8)
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2024-01-06T01:14:25,137   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/f2/8b/c6f3db1e022b3716322528bcfdf3e806c56cdcf7713e9db70b75343db384/MDAnalysis-2.5.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/2f/bc/ec355c860ef217518041358c33cf8d2905d0580daaa2946405deec5ea7f4/MDAnalysis-2.5.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/7b/28/c26a404ee253d0839b6ea21053b79e5662883b92b1672ff0e1678b679f44/MDAnalysis-2.5.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/36/c4/6d7e584d3dbccc8f197ed6acc47ec8c72dc4a11b101192c91d122079ec17/MDAnalysis-2.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,138   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/5e/35/c174ccad552dd6ddbcd907b3ed000344e4ea4da82cd960d0e20a7c221c25/MDAnalysis-2.5.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,139   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b9/80/72619db87e3b6997b84a817605439aa2c37b0e083aada34e4d3a312f4ea5/MDAnalysis-2.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,139   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b1/b5/fb8748f0b076b2d01df6f6d80bfcd6a94e07f1a9d35c636e085b511ca12d/MDAnalysis-2.5.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,141   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/3f/51/7c5790085f4d61211b38872cce7217bdfb46fa28f7247d7e565f67521645/MDAnalysis-2.6.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,141   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ea/0f/6dc7ec68db8c42b0703fb7bb15885ac607e1f0f09f5a9c134035353629fe/MDAnalysis-2.6.0-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/e7/05/65e89dac4c27984d8c2b555e104aed258db02f8141ecea64422771c63a75/MDAnalysis-2.6.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/1f/19/fe06d9d3a491eec7615d1a6b9804fd2b2f4f262a22cd1229eced619deb72/MDAnalysis-2.6.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,142   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/ad/22/7fbf313b9bcb3fe390da1eaaeecb542f52a8abdd09dc94c106a8a30ac505/MDAnalysis-2.6.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,143   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/a6/35/cf1c6a669eabb4e6b9c66e5f60214eef0d111c82dca16c265afd9a1f61e5/MDAnalysis-2.6.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,144   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/b3/e3/07df8ad49734110f5fde7698259ae1e9469b54f5e5f81f7a1ce217b61a5f/MDAnalysis-2.6.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,144   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/23/48/8f3d9538d15909542fa6db82eff31fc29da0a11978dcb92dcb49c315e2f6/MDAnalysis-2.6.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,145   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c4/09/f583d8a7cca23c493d89f85c4e82608c4ab20e47be9932c0ae508104d52d/MDAnalysis-2.6.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,146   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/06/0b/61f82278421c83499ca33e31d59b033c9302e32f99b9bf5cb6aa9acf9e54/MDAnalysis-2.6.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
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2024-01-06T01:14:25,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/58/45/756cd590d7bbd2056471534d2fba26f984fcb982b1fbf5caba865ac3ef01/MDAnalysis-2.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8d/c1/fefe27a9c75d67100c8417378811b1845dc57bc1e9a8ed3edac2c3d39e70/MDAnalysis-2.7.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/01/23/312ce77181799b5cbad48ff1857e009345a09072bd7ee39ea99815dde44e/MDAnalysis-2.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/95/e3/81606a3f65d2a3ed7e8494cb00edd1461e54b16c37e61e99db17041753eb/MDAnalysis-2.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,150   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/8e/79/b2731e5db9fa512ce12ebe9696a8ea6b1df2aa3495797dee92e92e1dacaf/MDAnalysis-2.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,151   Skipping link: No binaries permitted for mdanalysis: https://files.pythonhosted.org/packages/c6/03/8bdabb256d010f73fc94102264b8b2cb9018000a797a88561815743d3eee/MDAnalysis-2.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,151   Found link https://files.pythonhosted.org/packages/3e/67/c4ec984d4648c2435717fe8f35c54f22d6375eb0383060f8ebc21587bd13/MDAnalysis-2.7.0.tar.gz (from https://pypi.org/simple/mdanalysis/) (requires-python:>=3.9), version: 2.7.0
2024-01-06T01:14:25,152 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdanalysis/
2024-01-06T01:14:25,152 Getting page https://www.piwheels.org/simple/mdanalysis/
2024-01-06T01:14:25,153 Found index url https://www.piwheels.org/simple/
2024-01-06T01:14:25,227 Fetched page https://www.piwheels.org/simple/mdanalysis/ as text/html
2024-01-06T01:14:25,261   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp311-cp311-linux_armv6l.whl#sha256=8aa38f9104f0be623b8568194bc3ea304e3ea0f75a86d5ff7006d25174093611 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,261   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.7.0-cp311-cp311-linux_armv7l.whl#sha256=8aa38f9104f0be623b8568194bc3ea304e3ea0f75a86d5ff7006d25174093611 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,262   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv6l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,262   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp39-cp39-linux_armv7l.whl#sha256=00c43ef1479c539475a06a2e034c1c76c8d128876384a8a1a6ed9dd4c47c2670 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,262   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp311-cp311-linux_armv6l.whl#sha256=d5d44fe745731a30207cb8cdcc25a38c9f7c192ed28c4ee4d1ca0587e586afd7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,262   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.1-cp311-cp311-linux_armv7l.whl#sha256=d5d44fe745731a30207cb8cdcc25a38c9f7c192ed28c4ee4d1ca0587e586afd7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,262   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv6l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,263   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp39-cp39-linux_armv7l.whl#sha256=85cf13c9a14a89cd6241fa6ce79a1f99fb90a3fd801d521f9f31f0ba54b6ff8a (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,263   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv6l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,263   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.6.0-cp311-cp311-linux_armv7l.whl#sha256=bf50be23fc8c77d9917f763095841e41ba3c4771b7fcf334de7ab781a1f2c371 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,263   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv6l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,263   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.5.0-cp39-cp39-linux_armv7l.whl#sha256=332587d7301732247bb5add53a9b3eff4921e3c9b5f24b22f5067a668ddc4249 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.9)
2024-01-06T01:14:25,264   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv6l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,264   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.3-cp39-cp39-linux_armv7l.whl#sha256=385768a1cbe3cb8f6dabd63687b4e5ed03a5bb6c39ab90c5b75914881d468334 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,264   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv6l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,264   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.2-cp39-cp39-linux_armv7l.whl#sha256=05d70a930acb47af383673c351e087e42ab57747d7e0f7f9d72f448abf991dce (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv6l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.1-cp39-cp39-linux_armv7l.whl#sha256=f6908b1d7ccb4f424abc3a05af2e41727e6d4b0a4fdb40f03dd0286a667f100f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv6l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.4.0-cp39-cp39-linux_armv7l.whl#sha256=89a99e9094d9455640680119bc09e7ea680423ed644c57a199c1f2c083589a01 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv6l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,265   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.3.0-cp39-cp39-linux_armv7l.whl#sha256=954b2d003fe675d5b27a743a9345ee42bd958991591afd1dee95b8aacf8314d0 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,266   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv6l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,266   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.2.0-cp39-cp39-linux_armv7l.whl#sha256=4d852c41177612532ba7f7ec2627465cdaa02e4f2d480c72586209ed68e9827f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.8)
2024-01-06T01:14:25,266   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv6l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2024-01-06T01:14:25,266   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp37-cp37m-linux_armv7l.whl#sha256=15211cf0c7bf4819d9c48762d3c10d7541b273818dfe16cade585528469acb6e (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv6l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.1.0-cp39-cp39-linux_armv7l.whl#sha256=d9556ba8add30ef268b271c12910975221cca955af752f664094b594c5290f82 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.7)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=87407fa5dde4f05cd7b764dacc7ed05d672fdc5965332ce5d91d62d081ccbfc7 (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2024-01-06T01:14:25,267   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=565f74ce6e9dd72729736ca534c18c243dfa384a984c24dd759f1a263cd3c98c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=3.6)
2024-01-06T01:14:25,268   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv6l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,268   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp37-cp37m-linux_armv7l.whl#sha256=331239f905d05b614d662e8a60615f80c2611d8f6ea8f3e256a0cbcefdf53191 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,268   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv6l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,268   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-2.0.0b0-cp39-cp39-linux_armv7l.whl#sha256=6faa74b3b1a64cdd53a1313f3ecf13a260e99df077e63a45b273edd2b5afc680 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,269   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv6l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,269   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.1-cp37-cp37m-linux_armv7l.whl#sha256=636760cd892a8524f5912fafc58d29ffcce61acbd8730c7c69a3e922a164476f (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,269   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,269   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=9693d11a44eeb74415f6614dca0791bfe7f0cf24552a0ed3d17c133ff5b361ef (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,<3.9)
2024-01-06T01:14:25,269   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2024-01-06T01:14:25,270   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=1214ca3490e50243b48350c6c6a2c89b77cce8f1cd72f6d2549860b3db1ad84c (from https://www.piwheels.org/simple/mdanalysis/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3,!=3.4.*,<3.9)
2024-01-06T01:14:25,270   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,270   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=1368159b6134befa021a6536dcc02e047dc27b4c4672ae7f3b2f8e1559b43f8e (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,270   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv7l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,270   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp35-cp35m-linux_armv6l.whl#sha256=b669220c967a8cc746ae35c931d22da666f540595d1e9a9c3bb620effa9205b3 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,271   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv6l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,271   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp34-cp34m-linux_armv7l.whl#sha256=73adf04061df9ef3a9987e05113ccef5654aba2f3d2a3fe680ad590a76b2cd4c (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,271   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,271   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=e43dbbd4ecd06fb475d80e5dae571708415e1287e6dd2c669c98095e13ea2ae8 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,271   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv6l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,272   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp35-cp35m-linux_armv7l.whl#sha256=dafe9f34f8fc19527a5e2ebbe3080bfa1e89a5ceb160e8a52bf3ca2a9dce6442 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,272   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv7l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,272   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp37-cp37m-linux_armv6l.whl#sha256=51964d1254a62b7b673ddfa8ce4eb6616d3b13f1ea26702fc5ba1ea0a2d30696 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,272   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv6l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,272   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.1-cp39-cp39-linux_armv7l.whl#sha256=89f6feff5fc44ebffd65aa746c268db44a975620306dfebc09a8e7b8e9d5e4da (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,273   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,273   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp37-cp37m-linux_armv7l.whl#sha256=9b6fa10f5b5f2473db79f5704fbfc697f53d7c356f152ba8d80c761e63acbed7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,273   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv7l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,273   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp35-cp35m-linux_armv6l.whl#sha256=0f4e4569bec6b9d3d93de52938352429f2e85e568b7f35bd3a69f0a111ded689 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,273   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv6l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,274   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.20.0-cp39-cp39-linux_armv7l.whl#sha256=71f4f4953090bbbbafab4e8e5f1af9286acd1dbe6863f95771e62ca51d6772be (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,274   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv7l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,274   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp35-cp35m-linux_armv6l.whl#sha256=eb34e69945631c173f5b4ad0378dcf44bf0760fc8f90c68501d757ed9b6203f3 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,274   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv6l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,274   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.2-cp37-cp37m-linux_armv7l.whl#sha256=10a68d03d53e547d0cd2b7be40ec9af8591482bb43aeb5aad582f8a4926205b1 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,275   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv6l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,275   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=813d426b8a410f1c2297d31517407d5684acd025090423a79196237743514a41 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,275   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv7l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,275   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp34-cp34m-linux_armv6l.whl#sha256=20c2668ada02b91f1fde53c86ba8f14bcf3690458546f09a9fe1694ce814ad54 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,275   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,276   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=82dd02ba237b4261c0f0d1f180ee08cda6cd1c25871e12db138518ab9f8ca8a6 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,276   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv6l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,276   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp34-cp34m-linux_armv7l.whl#sha256=2182ab1095b6fb7758816fb8041d325e39216149dd9cc19f98b2394392a14f1b (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,276   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,276   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=426923348f9332d0762be3c94068ab6f54e143815453ae85d2a749e77e4226f7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,277   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv6l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,277   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.19.0-cp37-cp37m-linux_armv7l.whl#sha256=12656c0ac065200b557f80654ef49efaf3e7605ed9abdb94875f64143616f41d (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,277   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv6l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,277   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp34-cp34m-linux_armv7l.whl#sha256=9ed92944cd4b3322d05b9a4bb840fe590ed3be07609a93ffb09fe1f760ac363d (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,277   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,278   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=66b3e7f35c28b424a6ad19307554c223ebc24916dddb557dbd08762989c32119 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,278   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,278   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=07e291f5c3ee08d16b280c629411107ae1984f33458036e3418429e5f1a33092 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,278   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,278   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=bff2b2b18becae8ee1095f65c6e0d35f33fbc31544d3a12e9ab41bcdb6a775ce (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv7l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp34-cp34m-linux_armv6l.whl#sha256=ca0488c00e0be959cac05340ae1deb148c2769996e5abb346ad3a7487c2193d1 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv7l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.17.0-cp35-cp35m-linux_armv6l.whl#sha256=58492c63068e648dfb1879b19f1fa55e6e3b9589ee9141eda53c4aed5a915136 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv7l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,279   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp35-cp35m-linux_armv6l.whl#sha256=28e395835220893e8a10d101072b742e6401a4376ddfacc41e30572d8aa6ed65 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,280   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv7l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,280   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.2-cp34-cp34m-linux_armv6l.whl#sha256=e959b452e988fe4a9b8459143d6a64eef168bc3b9355a04b20ba20c4bb1bf601 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,280   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv7l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,280   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp34-cp34m-linux_armv6l.whl#sha256=985988f3d88079fe20f14ddee546fbb7b13e2a70dbeb4ac10c0f38f45afa7261 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,280   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv6l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,281   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.1-cp35-cp35m-linux_armv7l.whl#sha256=933bf37f65e3ae59c832a6798365a3da99432510fcfc802e2d6eaa48db3a7261 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,281   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,281   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=34198e0f9e509df1779c2255812cee0f720dc8e989c7d4b7196337f75f1ef51b (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,281   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,281   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=032867bf17eecd5fd249607198ad5c191fac901f2856d5a485ffc53a8eb687d4 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,282   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,282   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=04685acd7ab3d9f580c6dccdc18dfa33d89ea596521eede98bef2ec3f8f58af7 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,282   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv7l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,282   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.15.0-cp34-cp34m-linux_armv6l.whl#sha256=30c2bb9cf26e969dbdc8978bd4710e9e8a42ee42ed7c9ad506c63a0855448307 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,282   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv7l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,283   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp34-cp34m-linux_armv6l.whl#sha256=527918d821e76043cda119ee29aa26b835f8f85251d560d47616e9147b5a1539 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,283   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv7l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,283   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.14.0-cp35-cp35m-linux_armv6l.whl#sha256=b9d6e5734efb33b9383183904d491de8ef28aeeac7bbfdd617d48084126af113 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,283   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv6l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,283   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp35-cp35m-linux_armv7l.whl#sha256=46ca86446af4c56b5805a1cb36dd77ac64d009abb5500878ea4fa26320c7ba43 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv7l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp34-cp34m-linux_armv6l.whl#sha256=89151b95fc0cd948f7a2d1d660b8c2453a612a752a2a2d7d8fb6d169ff2782d4 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv6l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp37-cp37m-linux_armv7l.whl#sha256=a073eda71f157be82bd9b81ac12793e63834dde1ac9b63ca704668a88b025c1e (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv6l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,284   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.13.0-cp39-cp39-linux_armv7l.whl#sha256=ef25ee9269f3b7f8ab95f1c3c563c39740fd2b7801df49d6be7e702c7db7f8fc (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,285   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv6l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,285   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp35-cp35m-linux_armv7l.whl#sha256=47de147e5ee68a99b75107632aaa1e3bf84b4fa1f5bd7a456c1537266d437fbb (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,285   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv7l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,285   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.12.1-cp34-cp34m-linux_armv6l.whl#sha256=a0ddeb70a574aee9a5c491f2da635dc26e5e5b2b4cac7d8abbbffb3c1b4c7a8a (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,285   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv7l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,286   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp35-cp35m-linux_armv6l.whl#sha256=28a9bbed8fd84f6ebdf4efb48ef9e2435715169ef7a558ad7f11a33232e83815 (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,286   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv7l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,286   Skipping link: No binaries permitted for mdanalysis: https://www.piwheels.org/simple/mdanalysis/MDAnalysis-0.11.0-cp34-cp34m-linux_armv6l.whl#sha256=6d813f8dee5bde52fe344b851079bfaab34030f253869d7098ee33929566e36a (from https://www.piwheels.org/simple/mdanalysis/)
2024-01-06T01:14:25,286 Skipping link: not a file: https://www.piwheels.org/simple/mdanalysis/
2024-01-06T01:14:25,286 Skipping link: not a file: https://pypi.org/simple/mdanalysis/
2024-01-06T01:14:25,309 Given no hashes to check 1 links for project 'mdanalysis': discarding no candidates
2024-01-06T01:14:25,326 Collecting mdanalysis==2.7.0
2024-01-06T01:14:25,328   Created temporary directory: /tmp/pip-unpack-c2_ctnr7
2024-01-06T01:14:25,374   Downloading MDAnalysis-2.7.0.tar.gz (3.9 MB)
2024-01-06T01:14:27,306   Added mdanalysis==2.7.0 from https://files.pythonhosted.org/packages/3e/67/c4ec984d4648c2435717fe8f35c54f22d6375eb0383060f8ebc21587bd13/MDAnalysis-2.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-ncdez5m5'
2024-01-06T01:14:27,332   Created temporary directory: /tmp/pip-build-env-4sz711kd
2024-01-06T01:14:27,343   Installing build dependencies: started
2024-01-06T01:14:27,344   Running command pip subprocess to install build dependencies
2024-01-06T01:14:28,626   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9)
2024-01-06T01:14:29,226   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T01:14:29,229   Ignoring numpy: markers 'python_version == "3.10" and platform_python_implementation != "PyPy"' don't match your environment
2024-01-06T01:14:29,230   Ignoring numpy: markers 'python_version == "3.11" and platform_python_implementation != "PyPy"' don't match your environment
2024-01-06T01:14:29,232   Ignoring numpy: markers 'python_version == "3.12" and platform_python_implementation != "PyPy"' don't match your environment
2024-01-06T01:14:29,234   Ignoring numpy: markers 'python_version >= "3.13"' don't match your environment
2024-01-06T01:14:30,629   Collecting Cython>=0.28
2024-01-06T01:14:30,647     Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp39-cp39-linux_armv7l.whl (10.7 MB)
2024-01-06T01:14:31,100   Collecting packaging
2024-01-06T01:14:31,116     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T01:14:32,055   Collecting numpy==1.22.3
2024-01-06T01:14:32,070     Downloading https://www.piwheels.org/simple/numpy/numpy-1.22.3-cp39-cp39-linux_armv7l.whl (12.9 MB)
2024-01-06T01:14:33,009        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.9/12.9 MB 13.1 MB/s eta 0:00:00
2024-01-06T01:14:34,631   Collecting setuptools
2024-01-06T01:14:34,647     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-06T01:14:34,899   Collecting wheel
2024-01-06T01:14:34,915     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-06T01:14:36,928   Installing collected packages: wheel, setuptools, packaging, numpy, Cython
2024-01-06T01:14:37,145     Creating /tmp/pip-build-env-4sz711kd/overlay/bin
2024-01-06T01:14:37,147     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/wheel to 755
2024-01-06T01:14:47,569     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/f2py to 755
2024-01-06T01:14:47,571     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/f2py3 to 755
2024-01-06T01:14:47,573     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/f2py3.9 to 755
2024-01-06T01:14:50,926     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/cygdb to 755
2024-01-06T01:14:50,928     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/cython to 755
2024-01-06T01:14:50,930     changing mode of /tmp/pip-build-env-4sz711kd/overlay/bin/cythonize to 755
2024-01-06T01:14:50,955   Successfully installed Cython-3.0.7 numpy-1.22.3 packaging-23.2 setuptools-69.0.3 wheel-0.42.0

2024-01-06T01:14:51,146   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-06T01:14:51,146   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-06T01:14:51,578   Installing build dependencies: finished with status 'done'
2024-01-06T01:14:51,589   Getting requirements to build wheel: started
2024-01-06T01:14:51,590   Running command Getting requirements to build wheel
2024-01-06T01:15:04,694   performance hint: MDAnalysis/lib/nsgrid.pyx:417:37: Exception check after calling 'coord2cellid' will always require the GIL to be acquired. Declare 'coord2cellid' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,697   performance hint: MDAnalysis/lib/nsgrid.pyx:431:26: Exception check after calling 'coord2cellxyz' will always require the GIL to be acquired.
2024-01-06T01:15:04,697   Possible solutions:
2024-01-06T01:15:04,697   	1. Declare 'coord2cellxyz' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,697   	2. Use an 'int' return type on 'coord2cellxyz' to allow an error code to be returned.
2024-01-06T01:15:04,713   performance hint: MDAnalysis/lib/nsgrid.pyx:559:34: Exception check after calling 'coord2cellxyz' will always require the GIL to be acquired.
2024-01-06T01:15:04,713   Possible solutions:
2024-01-06T01:15:04,714   	1. Declare 'coord2cellxyz' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,714   	2. Use an 'int' return type on 'coord2cellxyz' to allow an error code to be returned.
2024-01-06T01:15:04,715   performance hint: MDAnalysis/lib/nsgrid.pyx:567:56: Exception check after calling 'cellxyz2cellid' will always require the GIL to be acquired. Declare 'cellxyz2cellid' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,716   performance hint: MDAnalysis/lib/nsgrid.pyx:574:53: Exception check after calling 'calc_distsq' will always require the GIL to be acquired. Declare 'calc_distsq' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,717   performance hint: MDAnalysis/lib/nsgrid.pyx:578:57: Exception check after calling 'add_neighbors' will always require the GIL to be acquired.
2024-01-06T01:15:04,717   Possible solutions:
2024-01-06T01:15:04,717   	1. Declare 'add_neighbors' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:04,717   	2. Use an 'int' return type on 'add_neighbors' to allow an error code to be returned.
2024-01-06T01:15:09,842   performance hint: MDAnalysis/lib/c_distances.pyx:275:5: Exception check on '_minimum_image_orthogonal' will always require the GIL to be acquired.
2024-01-06T01:15:09,842   Possible solutions:
2024-01-06T01:15:09,842   	1. Declare '_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:09,842   	2. Use an 'int' return type on '_minimum_image_orthogonal' to allow an error code to be returned.
2024-01-06T01:15:09,843   performance hint: MDAnalysis/lib/c_distances.pyx:302:5: Exception check on '_minimum_image_triclinic' will always require the GIL to be acquired.
2024-01-06T01:15:09,843   Possible solutions:
2024-01-06T01:15:09,843   	1. Declare '_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:09,843   	2. Use an 'int' return type on '_minimum_image_triclinic' to allow an error code to be returned.
2024-01-06T01:15:11,861   performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_0_minimum_image_orthogonal' will always require the GIL to be acquired.
2024-01-06T01:15:11,861   Possible solutions:
2024-01-06T01:15:11,861   	1. Declare '__pyx_fuse_0_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:11,861   	2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_orthogonal' to allow an error code to be returned.
2024-01-06T01:15:11,870   performance hint: MDAnalysis/lib/c_distances.pyx:390:37: Exception check after calling '__pyx_fuse_1_minimum_image_orthogonal' will always require the GIL to be acquired.
2024-01-06T01:15:11,870   Possible solutions:
2024-01-06T01:15:11,871   	1. Declare '__pyx_fuse_1_minimum_image_orthogonal' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:11,871   	2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_orthogonal' to allow an error code to be returned.
2024-01-06T01:15:11,905   performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_0_minimum_image_triclinic' will always require the GIL to be acquired.
2024-01-06T01:15:11,906   Possible solutions:
2024-01-06T01:15:11,906   	1. Declare '__pyx_fuse_0_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:11,906   	2. Use an 'int' return type on '__pyx_fuse_0_minimum_image_triclinic' to allow an error code to be returned.
2024-01-06T01:15:11,915   performance hint: MDAnalysis/lib/c_distances.pyx:414:36: Exception check after calling '__pyx_fuse_1_minimum_image_triclinic' will always require the GIL to be acquired.
2024-01-06T01:15:11,916   Possible solutions:
2024-01-06T01:15:11,916   	1. Declare '__pyx_fuse_1_minimum_image_triclinic' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions.
2024-01-06T01:15:11,916   	2. Use an 'int' return type on '__pyx_fuse_1_minimum_image_triclinic' to allow an error code to be returned.
2024-01-06T01:15:27,855   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2024-01-06T01:15:27,855   Will attempt to use Cython.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/formats/libdcd.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/c_distances.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/c_distances_openmp.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/qcprot.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/formats/libmdaxdr.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/lib/formats/cython_util.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,856   Compiling MDAnalysis/analysis/encore/cutils.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/analysis/encore/clustering/affinityprop.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/lib/_cutil.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/lib/_augment.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/lib/nsgrid.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2024-01-06T01:15:27,857   Compiling MDAnalysis/coordinates/timestep.pyx because it depends on /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/__init__.pxd.
2024-01-06T01:15:27,857   [ 1/13] Cythonizing MDAnalysis/lib/_augment.pyx
2024-01-06T01:15:27,858   [ 2/13] Cythonizing MDAnalysis/lib/_cutil.pyx
2024-01-06T01:15:27,858   [ 3/13] Cythonizing MDAnalysis/lib/nsgrid.pyx
2024-01-06T01:15:27,858   [ 4/13] Cythonizing MDAnalysis/analysis/encore/clustering/affinityprop.pyx
2024-01-06T01:15:27,858   [ 5/13] Cythonizing MDAnalysis/analysis/encore/cutils.pyx
2024-01-06T01:15:27,858   [ 6/13] Cythonizing MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx
2024-01-06T01:15:27,858   [ 7/13] Cythonizing MDAnalysis/coordinates/timestep.pyx
2024-01-06T01:15:27,858   [ 8/13] Cythonizing MDAnalysis/lib/c_distances.pyx
2024-01-06T01:15:27,859   [ 9/13] Cythonizing MDAnalysis/lib/c_distances_openmp.pyx
2024-01-06T01:15:27,859   [10/13] Cythonizing MDAnalysis/lib/formats/cython_util.pyx
2024-01-06T01:15:27,859   [11/13] Cythonizing MDAnalysis/lib/formats/libdcd.pyx
2024-01-06T01:15:27,859   [12/13] Cythonizing MDAnalysis/lib/formats/libmdaxdr.pyx
2024-01-06T01:15:27,859   [13/13] Cythonizing MDAnalysis/lib/qcprot.pyx
2024-01-06T01:15:28,733   Getting requirements to build wheel: finished with status 'done'
2024-01-06T01:15:28,745   Created temporary directory: /tmp/pip-modern-metadata-xgqdk4ql
2024-01-06T01:15:28,748   Preparing metadata (pyproject.toml): started
2024-01-06T01:15:28,749   Running command Preparing metadata (pyproject.toml)
2024-01-06T01:15:31,224   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2024-01-06T01:15:31,224   Will attempt to use Cython.
2024-01-06T01:15:31,344   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2024-01-06T01:15:31,345     corresp(dist, value, root_dir)
2024-01-06T01:15:31,602   running dist_info
2024-01-06T01:15:31,609   creating /tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info
2024-01-06T01:15:31,614   writing /tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/PKG-INFO
2024-01-06T01:15:31,629   writing dependency_links to /tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/dependency_links.txt
2024-01-06T01:15:31,636   writing requirements to /tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/requires.txt
2024-01-06T01:15:31,637   writing top-level names to /tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/top_level.txt
2024-01-06T01:15:31,639   writing manifest file '/tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/SOURCES.txt'
2024-01-06T01:15:31,689   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,690   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,690   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,690   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,692   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,693   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,693   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,693   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,693   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,694   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,694   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,695   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,695   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,696   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,699   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,700   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:31,700   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
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2024-01-06T01:15:31,707   reading manifest file '/tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/SOURCES.txt'
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2024-01-06T01:15:31,862   adding license file 'AUTHORS'
2024-01-06T01:15:31,878   writing manifest file '/tmp/pip-modern-metadata-xgqdk4ql/MDAnalysis.egg-info/SOURCES.txt'
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2024-01-06T01:15:32,118   Source in /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88 has version 2.7.0, which satisfies requirement mdanalysis==2.7.0 from https://files.pythonhosted.org/packages/3e/67/c4ec984d4648c2435717fe8f35c54f22d6375eb0383060f8ebc21587bd13/MDAnalysis-2.7.0.tar.gz
2024-01-06T01:15:32,119   Removed mdanalysis==2.7.0 from https://files.pythonhosted.org/packages/3e/67/c4ec984d4648c2435717fe8f35c54f22d6375eb0383060f8ebc21587bd13/MDAnalysis-2.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-ncdez5m5'
2024-01-06T01:15:32,129 Created temporary directory: /tmp/pip-unpack-bp0rmdo7
2024-01-06T01:15:32,130 Created temporary directory: /tmp/pip-unpack-r_xg7ev0
2024-01-06T01:15:32,206 Building wheels for collected packages: mdanalysis
2024-01-06T01:15:32,212   Created temporary directory: /tmp/pip-wheel-fx_6rcfx
2024-01-06T01:15:32,212   Destination directory: /tmp/pip-wheel-fx_6rcfx
2024-01-06T01:15:32,215   Building wheel for mdanalysis (pyproject.toml): started
2024-01-06T01:15:32,216   Running command Building wheel for mdanalysis (pyproject.toml)
2024-01-06T01:15:34,606   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2024-01-06T01:15:34,606   Will attempt to use Cython.
2024-01-06T01:15:34,720   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies)
2024-01-06T01:15:34,720     corresp(dist, value, root_dir)
2024-01-06T01:15:34,952   running bdist_wheel
2024-01-06T01:15:34,977   running build
2024-01-06T01:15:34,978   running build_py
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2024-01-06T01:15:34,986   creating build/lib.linux-armv7l-cpython-39/MDAnalysis
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2024-01-06T01:15:35,065   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
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2024-01-06T01:15:35,077   copying MDAnalysis/analysis/align.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,081   copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,083   copying MDAnalysis/analysis/rdf.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,086   copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,088   copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,090   copying MDAnalysis/analysis/bat.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,093   copying MDAnalysis/analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,095   copying MDAnalysis/analysis/polymer.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,097   copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,099   copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,102   copying MDAnalysis/analysis/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,104   copying MDAnalysis/analysis/density.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,107   copying MDAnalysis/analysis/psa.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,111   copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,114   copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,116   copying MDAnalysis/analysis/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,119   copying MDAnalysis/analysis/rms.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,122   copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,124   copying MDAnalysis/analysis/pca.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,127   copying MDAnalysis/analysis/msd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:15:35,130   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2024-01-06T01:15:35,131   copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2024-01-06T01:15:35,133   copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2024-01-06T01:15:35,136   copying MDAnalysis/visualization/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization
2024-01-06T01:15:35,138   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,139   copying MDAnalysis/selections/vmd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,141   copying MDAnalysis/selections/pymol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,142   copying MDAnalysis/selections/jmol.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,144   copying MDAnalysis/selections/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,146   copying MDAnalysis/selections/gromacs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,147   copying MDAnalysis/selections/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,150   copying MDAnalysis/selections/charmm.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/selections
2024-01-06T01:15:35,152   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,153   copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,155   copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,158   copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,160   copying MDAnalysis/auxiliary/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,162   copying MDAnalysis/auxiliary/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary
2024-01-06T01:15:35,165   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2024-01-06T01:15:35,166   copying MDAnalysis/tests/datafiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2024-01-06T01:15:35,167   copying MDAnalysis/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/tests
2024-01-06T01:15:35,170   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,171   copying MDAnalysis/core/selection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,174   copying MDAnalysis/core/topology.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,177   copying MDAnalysis/core/_get_readers.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,179   copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,182   copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,187   copying MDAnalysis/core/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,190   copying MDAnalysis/core/universe.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,195   copying MDAnalysis/core/accessors.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,199   copying MDAnalysis/core/groups.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/core
2024-01-06T01:15:35,207   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,208   copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,212   copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,214   copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,216   copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,218   copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,220   copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,222   copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,224   copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,227   copying MDAnalysis/coordinates/chain.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,229   copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,231   copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,233   copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,236   copying MDAnalysis/coordinates/null.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,238   copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,240   copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,243   copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,245   copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,247   copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,249   copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,251   copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,254   copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,256   copying MDAnalysis/coordinates/core.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,257   copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,259   copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,262   copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,264   copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,266   copying MDAnalysis/coordinates/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,269   copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,271   copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,273   copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,275   copying MDAnalysis/coordinates/memory.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,278   copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,280   copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,282   copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,286   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,287   copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,290   copying MDAnalysis/lib/log.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,292   copying MDAnalysis/lib/util.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,296   copying MDAnalysis/lib/mdamath.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,298   copying MDAnalysis/lib/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,300   copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,302   copying MDAnalysis/lib/transformations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,305   copying MDAnalysis/lib/distances.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,309   copying MDAnalysis/lib/correlations.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,311   copying MDAnalysis/lib/_distopia.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,313   copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,316   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,317   copying MDAnalysis/transformations/rotate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,319   copying MDAnalysis/transformations/nojump.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,321   copying MDAnalysis/transformations/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,323   copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,326   copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,328   copying MDAnalysis/transformations/fit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,330   copying MDAnalysis/transformations/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,332   copying MDAnalysis/transformations/wrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,334   copying MDAnalysis/transformations/translate.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations
2024-01-06T01:15:35,337   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,338   copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,341   copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,343   copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,346   copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,348   copying MDAnalysis/converters/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,350   copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,352   copying MDAnalysis/converters/base.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,354   copying MDAnalysis/converters/RDKit.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/converters
2024-01-06T01:15:35,358   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2024-01-06T01:15:35,359   copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2024-01-06T01:15:35,362   copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2024-01-06T01:15:35,364   copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2024-01-06T01:15:35,367   copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr
2024-01-06T01:15:35,370   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2024-01-06T01:15:35,371   copying MDAnalysis/analysis/hole2/hole.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2024-01-06T01:15:35,378   copying MDAnalysis/analysis/hole2/templates.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2024-01-06T01:15:35,384   copying MDAnalysis/analysis/hole2/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2024-01-06T01:15:35,389   copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2
2024-01-06T01:15:35,397   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2024-01-06T01:15:35,400   copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2024-01-06T01:15:35,406   copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds
2024-01-06T01:15:35,410   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2024-01-06T01:15:35,411   copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2024-01-06T01:15:35,413   copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy
2024-01-06T01:15:35,416   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:15:35,417   copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:15:35,421   copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:15:35,424   copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:15:35,427   copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:15:35,429   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,430   copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,432   copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,435   copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,437   copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,439   copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,442   copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:35,445   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2024-01-06T01:15:35,446   copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2024-01-06T01:15:35,447   copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2024-01-06T01:15:35,450   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:35,451   copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:35,453   copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:35,456   copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:35,457   copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:35,460   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:35,461   copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:35,463   copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:35,466   copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:35,468   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:35,469   copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:35,471   running egg_info
2024-01-06T01:15:35,477   writing MDAnalysis.egg-info/PKG-INFO
2024-01-06T01:15:35,491   writing dependency_links to MDAnalysis.egg-info/dependency_links.txt
2024-01-06T01:15:35,498   writing requirements to MDAnalysis.egg-info/requires.txt
2024-01-06T01:15:35,499   writing top-level names to MDAnalysis.egg-info/top_level.txt
2024-01-06T01:15:35,530   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,530   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,530   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,530   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,530   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,531   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,531   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,531   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,531   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,532   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,533   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,534   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,534   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,534   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,534   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,535   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,535   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,536   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,537   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/clustering/include/ap.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,538   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,539   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,540   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,541   dependency /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
2024-01-06T01:15:35,546   reading manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2024-01-06T01:15:35,558   reading manifest template 'MANIFEST.in'
2024-01-06T01:15:35,720   warning: no previously-included files matching 'doc/html/html' found anywhere in distribution
2024-01-06T01:15:35,722   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2024-01-06T01:15:35,725   warning: no previously-included files matching '*.pyo' found anywhere in distribution
2024-01-06T01:15:35,727   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2024-01-06T01:15:35,730   warning: no previously-included files matching '*~' found anywhere in distribution
2024-01-06T01:15:35,732   warning: no previously-included files matching '.git' found anywhere in distribution
2024-01-06T01:15:35,732   adding license file 'LICENSE'
2024-01-06T01:15:35,732   adding license file 'AUTHORS'
2024-01-06T01:15:35,756   writing manifest file 'MDAnalysis.egg-info/SOURCES.txt'
2024-01-06T01:15:35,760   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.analysis.encore.clustering.include' is absent from the `packages` configuration.
2024-01-06T01:15:35,760   !!

2024-01-06T01:15:35,760           ********************************************************************************
2024-01-06T01:15:35,760           ############################
2024-01-06T01:15:35,760           # Package would be ignored #
2024-01-06T01:15:35,761           ############################
2024-01-06T01:15:35,761           Python recognizes 'MDAnalysis.analysis.encore.clustering.include' as an importable package[^1],
2024-01-06T01:15:35,761           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,761           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,761           package, please make sure that 'MDAnalysis.analysis.encore.clustering.include' is explicitly added
2024-01-06T01:15:35,761           to the `packages` configuration field.

2024-01-06T01:15:35,762           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,762           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,762           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,762           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,762           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,762           If you don't want 'MDAnalysis.analysis.encore.clustering.include' to be distributed and are
2024-01-06T01:15:35,763           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.include' via
2024-01-06T01:15:35,763           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,763           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,763           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,763           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,763           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,764           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,764                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,764                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,764                 directory, all directories are treated like packages.
2024-01-06T01:15:35,764           ********************************************************************************

2024-01-06T01:15:35,764   !!
2024-01-06T01:15:35,765     check.warn(importable)
2024-01-06T01:15:35,765   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.analysis.encore.clustering.src' is absent from the `packages` configuration.
2024-01-06T01:15:35,765   !!

2024-01-06T01:15:35,765           ********************************************************************************
2024-01-06T01:15:35,765           ############################
2024-01-06T01:15:35,765           # Package would be ignored #
2024-01-06T01:15:35,766           ############################
2024-01-06T01:15:35,766           Python recognizes 'MDAnalysis.analysis.encore.clustering.src' as an importable package[^1],
2024-01-06T01:15:35,766           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,766           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,766           package, please make sure that 'MDAnalysis.analysis.encore.clustering.src' is explicitly added
2024-01-06T01:15:35,766           to the `packages` configuration field.

2024-01-06T01:15:35,767           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,767           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,767           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,767           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,767           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,767           If you don't want 'MDAnalysis.analysis.encore.clustering.src' to be distributed and are
2024-01-06T01:15:35,768           already explicitly excluding 'MDAnalysis.analysis.encore.clustering.src' via
2024-01-06T01:15:35,768           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,768           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,768           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,768           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,768           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,769           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,769                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,769                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,769                 directory, all directories are treated like packages.
2024-01-06T01:15:35,769           ********************************************************************************

2024-01-06T01:15:35,769   !!
2024-01-06T01:15:35,770     check.warn(importable)
2024-01-06T01:15:35,770   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is absent from the `packages` configuration.
2024-01-06T01:15:35,770   !!

2024-01-06T01:15:35,770           ********************************************************************************
2024-01-06T01:15:35,770           ############################
2024-01-06T01:15:35,770           # Package would be ignored #
2024-01-06T01:15:35,770           ############################
2024-01-06T01:15:35,770           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.include' as an importable package[^1],
2024-01-06T01:15:35,771           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,771           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,771           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.include' is explicitly added
2024-01-06T01:15:35,771           to the `packages` configuration field.

2024-01-06T01:15:35,771           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,771           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,772           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,772           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,772           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,772           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.include' to be distributed and are
2024-01-06T01:15:35,772           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.include' via
2024-01-06T01:15:35,772           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,773           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,773           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,773           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,773           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,773           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,774                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,774                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,774                 directory, all directories are treated like packages.
2024-01-06T01:15:35,774           ********************************************************************************

2024-01-06T01:15:35,774   !!
2024-01-06T01:15:35,774     check.warn(importable)
2024-01-06T01:15:35,774   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is absent from the `packages` configuration.
2024-01-06T01:15:35,774   !!

2024-01-06T01:15:35,775           ********************************************************************************
2024-01-06T01:15:35,775           ############################
2024-01-06T01:15:35,775           # Package would be ignored #
2024-01-06T01:15:35,775           ############################
2024-01-06T01:15:35,775           Python recognizes 'MDAnalysis.analysis.encore.dimensionality_reduction.src' as an importable package[^1],
2024-01-06T01:15:35,775           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,775           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,776           package, please make sure that 'MDAnalysis.analysis.encore.dimensionality_reduction.src' is explicitly added
2024-01-06T01:15:35,776           to the `packages` configuration field.

2024-01-06T01:15:35,776           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,776           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,776           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,776           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,777           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,777           If you don't want 'MDAnalysis.analysis.encore.dimensionality_reduction.src' to be distributed and are
2024-01-06T01:15:35,777           already explicitly excluding 'MDAnalysis.analysis.encore.dimensionality_reduction.src' via
2024-01-06T01:15:35,777           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,777           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,777           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,777           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,778           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,778           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,778                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,778                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,778                 directory, all directories are treated like packages.
2024-01-06T01:15:35,779           ********************************************************************************

2024-01-06T01:15:35,779   !!
2024-01-06T01:15:35,779     check.warn(importable)
2024-01-06T01:15:35,779   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.lib.formats.include' is absent from the `packages` configuration.
2024-01-06T01:15:35,779   !!

2024-01-06T01:15:35,779           ********************************************************************************
2024-01-06T01:15:35,779           ############################
2024-01-06T01:15:35,780           # Package would be ignored #
2024-01-06T01:15:35,780           ############################
2024-01-06T01:15:35,780           Python recognizes 'MDAnalysis.lib.formats.include' as an importable package[^1],
2024-01-06T01:15:35,780           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,780           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,780           package, please make sure that 'MDAnalysis.lib.formats.include' is explicitly added
2024-01-06T01:15:35,781           to the `packages` configuration field.

2024-01-06T01:15:35,781           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,781           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,781           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,781           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,782           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,782           If you don't want 'MDAnalysis.lib.formats.include' to be distributed and are
2024-01-06T01:15:35,782           already explicitly excluding 'MDAnalysis.lib.formats.include' via
2024-01-06T01:15:35,782           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,782           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,782           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,783           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,783           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,783           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,783                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,784                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,784                 directory, all directories are treated like packages.
2024-01-06T01:15:35,784           ********************************************************************************

2024-01-06T01:15:35,784   !!
2024-01-06T01:15:35,784     check.warn(importable)
2024-01-06T01:15:35,784   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.lib.formats.src' is absent from the `packages` configuration.
2024-01-06T01:15:35,784   !!

2024-01-06T01:15:35,785           ********************************************************************************
2024-01-06T01:15:35,785           ############################
2024-01-06T01:15:35,785           # Package would be ignored #
2024-01-06T01:15:35,785           ############################
2024-01-06T01:15:35,785           Python recognizes 'MDAnalysis.lib.formats.src' as an importable package[^1],
2024-01-06T01:15:35,785           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,786           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,786           package, please make sure that 'MDAnalysis.lib.formats.src' is explicitly added
2024-01-06T01:15:35,786           to the `packages` configuration field.

2024-01-06T01:15:35,786           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,786           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,786           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,786           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,787           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,787           If you don't want 'MDAnalysis.lib.formats.src' to be distributed and are
2024-01-06T01:15:35,787           already explicitly excluding 'MDAnalysis.lib.formats.src' via
2024-01-06T01:15:35,787           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,787           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,788           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,788           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,788           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,788           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,789                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,789                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,789                 directory, all directories are treated like packages.
2024-01-06T01:15:35,789           ********************************************************************************

2024-01-06T01:15:35,789   !!
2024-01-06T01:15:35,789     check.warn(importable)
2024-01-06T01:15:35,789   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.lib.include' is absent from the `packages` configuration.
2024-01-06T01:15:35,790   !!

2024-01-06T01:15:35,790           ********************************************************************************
2024-01-06T01:15:35,790           ############################
2024-01-06T01:15:35,790           # Package would be ignored #
2024-01-06T01:15:35,790           ############################
2024-01-06T01:15:35,790           Python recognizes 'MDAnalysis.lib.include' as an importable package[^1],
2024-01-06T01:15:35,791           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,791           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,791           package, please make sure that 'MDAnalysis.lib.include' is explicitly added
2024-01-06T01:15:35,791           to the `packages` configuration field.

2024-01-06T01:15:35,791           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,791           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,791           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,792           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,792           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,792           If you don't want 'MDAnalysis.lib.include' to be distributed and are
2024-01-06T01:15:35,792           already explicitly excluding 'MDAnalysis.lib.include' via
2024-01-06T01:15:35,792           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,793           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,793           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,793           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,793           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,793           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,794                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,794                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,794                 directory, all directories are treated like packages.
2024-01-06T01:15:35,794           ********************************************************************************

2024-01-06T01:15:35,794   !!
2024-01-06T01:15:35,794     check.warn(importable)
2024-01-06T01:15:35,794   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.lib.libmdanalysis' is absent from the `packages` configuration.
2024-01-06T01:15:35,795   !!

2024-01-06T01:15:35,795           ********************************************************************************
2024-01-06T01:15:35,795           ############################
2024-01-06T01:15:35,795           # Package would be ignored #
2024-01-06T01:15:35,795           ############################
2024-01-06T01:15:35,795           Python recognizes 'MDAnalysis.lib.libmdanalysis' as an importable package[^1],
2024-01-06T01:15:35,796           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,796           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,796           package, please make sure that 'MDAnalysis.lib.libmdanalysis' is explicitly added
2024-01-06T01:15:35,796           to the `packages` configuration field.

2024-01-06T01:15:35,796           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,797           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,797           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,797           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,797           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,797           If you don't want 'MDAnalysis.lib.libmdanalysis' to be distributed and are
2024-01-06T01:15:35,798           already explicitly excluding 'MDAnalysis.lib.libmdanalysis' via
2024-01-06T01:15:35,798           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,798           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,798           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,798           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,799           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,799           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,799                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,799                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,799                 directory, all directories are treated like packages.
2024-01-06T01:15:35,800           ********************************************************************************

2024-01-06T01:15:35,800   !!
2024-01-06T01:15:35,800     check.warn(importable)
2024-01-06T01:15:35,800   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'MDAnalysis.lib.src.transformations' is absent from the `packages` configuration.
2024-01-06T01:15:35,800   !!

2024-01-06T01:15:35,800           ********************************************************************************
2024-01-06T01:15:35,801           ############################
2024-01-06T01:15:35,801           # Package would be ignored #
2024-01-06T01:15:35,801           ############################
2024-01-06T01:15:35,801           Python recognizes 'MDAnalysis.lib.src.transformations' as an importable package[^1],
2024-01-06T01:15:35,801           but it is absent from setuptools' `packages` configuration.

2024-01-06T01:15:35,802           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T01:15:35,802           package, please make sure that 'MDAnalysis.lib.src.transformations' is explicitly added
2024-01-06T01:15:35,802           to the `packages` configuration field.

2024-01-06T01:15:35,802           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T01:15:35,802           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T01:15:35,802           instead of `find_packages(...)`/`find:`).

2024-01-06T01:15:35,803           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T01:15:35,803           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T01:15:35,803           If you don't want 'MDAnalysis.lib.src.transformations' to be distributed and are
2024-01-06T01:15:35,803           already explicitly excluding 'MDAnalysis.lib.src.transformations' via
2024-01-06T01:15:35,803           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T01:15:35,803           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T01:15:35,804           combination with a more fine grained `package-data` configuration.

2024-01-06T01:15:35,804           You can read more about "package data files" on setuptools documentation page:

2024-01-06T01:15:35,804           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T01:15:35,804           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T01:15:35,804                 even if it does not contain any `.py` files.
2024-01-06T01:15:35,805                 On the other hand, currently there is no concept of package data
2024-01-06T01:15:35,805                 directory, all directories are treated like packages.
2024-01-06T01:15:35,805           ********************************************************************************

2024-01-06T01:15:35,805   !!
2024-01-06T01:15:35,805     check.warn(importable)
2024-01-06T01:15:35,805   copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2024-01-06T01:15:35,805   copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data
2024-01-06T01:15:35,806   copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,827   copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,829   copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:15:35,832   copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,856   copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,859   copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,891   copying MDAnalysis/lib/_cutil.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,893   copying MDAnalysis/lib/_cutil.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,896   copying MDAnalysis/lib/c_distances.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,942   copying MDAnalysis/lib/c_distances.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,944   copying MDAnalysis/lib/c_distances.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,947   copying MDAnalysis/lib/c_distances_openmp.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,958   copying MDAnalysis/lib/c_distances_openmp.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,960   copying MDAnalysis/lib/nsgrid.cpp -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,992   copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:35,995   copying MDAnalysis/lib/qcprot.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:36,019   copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:36,021   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include
2024-01-06T01:15:36,022   copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include
2024-01-06T01:15:36,025   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis
2024-01-06T01:15:36,026   copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis
2024-01-06T01:15:36,028   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src
2024-01-06T01:15:36,028   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2024-01-06T01:15:36,029   copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2024-01-06T01:15:36,031   copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2024-01-06T01:15:36,033   copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2024-01-06T01:15:36,037   copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:36,045   copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:15:36,048   copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:36,058   copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:15:36,060   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include
2024-01-06T01:15:36,061   copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include
2024-01-06T01:15:36,064   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src
2024-01-06T01:15:36,065   copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src
2024-01-06T01:15:36,067   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:36,076   copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:15:36,078   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include
2024-01-06T01:15:36,079   copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include
2024-01-06T01:15:36,081   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src
2024-01-06T01:15:36,082   copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src
2024-01-06T01:15:36,084   copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,104   copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,106   copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,108   copying MDAnalysis/lib/formats/libdcd.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,136   copying MDAnalysis/lib/formats/libdcd.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,139   copying MDAnalysis/lib/formats/libdcd.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,141   copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,168   copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,170   copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,173   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,174   copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,176   copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,179   copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,181   copying MDAnalysis/lib/formats/include/trr_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,183   copying MDAnalysis/lib/formats/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,186   copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,188   copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,190   copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include
2024-01-06T01:15:36,192   creating build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,193   copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,195   copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,199   copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,201   copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,203   copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:15:36,220   running build_ext
2024-01-06T01:15:36,223   building 'MDAnalysis.lib.formats.libdcd' extension
2024-01-06T01:15:36,224   creating build/temp.linux-armv7l-cpython-39
2024-01-06T01:15:36,224   creating build/temp.linux-armv7l-cpython-39/MDAnalysis
2024-01-06T01:15:36,225   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib
2024-01-06T01:15:36,225   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats
2024-01-06T01:15:36,226   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libdcd.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:15:36,622   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:15:36,622                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:15:36,622                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:15:36,622                    from MDAnalysis/lib/formats/libdcd.c:1226:
2024-01-06T01:15:36,622   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:15:36,623      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:15:36,623         |  ^~~~~~~
2024-01-06T01:15:36,687   In file included from MDAnalysis/lib/formats/libdcd.c:1233:
2024-01-06T01:15:36,687   MDAnalysis/lib/formats/include/readdcd.h: In function ‘read_dcdstep’:
2024-01-06T01:15:36,687   MDAnalysis/lib/formats/include/readdcd.h:562:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:15:36,687     562 |       if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
2024-01-06T01:15:36,687         |                     ^~
2024-01-06T01:15:36,690   MDAnalysis/lib/formats/include/readdcd.h: In function ‘write_dcdheader’:
2024-01-06T01:15:36,690   MDAnalysis/lib/formats/include/readdcd.h:698:14: warning: unused variable ‘tmbuf’ [-Wunused-variable]
2024-01-06T01:15:36,690     698 |   struct tm *tmbuf;
2024-01-06T01:15:36,690         |              ^~~~~
2024-01-06T01:15:36,691   MDAnalysis/lib/formats/include/readdcd.h:697:10: warning: unused variable ‘cur_time’ [-Wunused-variable]
2024-01-06T01:15:36,691     697 |   time_t cur_time;
2024-01-06T01:15:36,691         |          ^~~~~~~~
2024-01-06T01:15:39,104   In file included from MDAnalysis/lib/formats/include/readdcd.h:25,
2024-01-06T01:15:39,104                    from MDAnalysis/lib/formats/libdcd.c:1233:
2024-01-06T01:15:39,104   At top level:
2024-01-06T01:15:39,105   MDAnalysis/lib/formats/include/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
2024-01-06T01:15:39,105      96 | static void swap2_aligned(void *v, long ndata) {
2024-01-06T01:15:39,105         |             ^~~~~~~~~~~~~
2024-01-06T01:15:39,105   MDAnalysis/lib/formats/include/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
2024-01-06T01:15:39,105      32 | static void swap2_unaligned(void *v, long ndata) {
2024-01-06T01:15:39,106         |             ^~~~~~~~~~~~~~~
2024-01-06T01:15:39,106   In file included from MDAnalysis/lib/formats/libdcd.c:1232:
2024-01-06T01:15:39,106   MDAnalysis/lib/formats/include/fastio.h:453:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
2024-01-06T01:15:39,106     453 | static int fio_write_str(fio_fd fd, const char *str) {
2024-01-06T01:15:39,106         |            ^~~~~~~~~~~~~
2024-01-06T01:15:39,106   MDAnalysis/lib/formats/include/fastio.h:449:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
2024-01-06T01:15:39,106     449 | static int fio_read_int32(fio_fd fd, int *i) {
2024-01-06T01:15:39,107         |            ^~~~~~~~~~~~~~
2024-01-06T01:16:31,159   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:16:31,373   building 'MDAnalysis.lib.c_distances' extension
2024-01-06T01:16:31,373   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:16:31,714   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:16:31,714                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:16:31,714                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:16:31,714                    from MDAnalysis/lib/c_distances.c:1228:
2024-01-06T01:16:31,714   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:16:31,715      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:16:31,715         |  ^~~~~~~
2024-01-06T01:17:21,773   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:17:22,002   building 'MDAnalysis.lib.c_distances_openmp' extension
2024-01-06T01:17:22,003   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DPARALLEL -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/c_distances_openmp.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -fopenmp -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:17:22,316   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:17:22,316                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:17:22,316                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:17:22,316                    from MDAnalysis/lib/c_distances_openmp.c:1237:
2024-01-06T01:17:22,316   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:17:22,316      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:17:22,317         |  ^~~~~~~
2024-01-06T01:17:35,684   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.o -L/usr/lib -lm -lgomp -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -fopenmp
2024-01-06T01:17:35,878   building 'MDAnalysis.lib.qcprot' extension
2024-01-06T01:17:35,879   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/qcprot.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:17:36,461   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:17:36,461                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:17:36,461                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:17:36,461                    from MDAnalysis/lib/qcprot.c:1220:
2024-01-06T01:17:36,461   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:17:36,462      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:17:36,462         |  ^~~~~~~
2024-01-06T01:17:36,737   MDAnalysis/lib/qcprot.c: In function ‘__pyx_fuse_0__pyx_f_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2024-01-06T01:17:36,747   MDAnalysis/lib/qcprot.c:21115:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:17:36,747   21115 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-01-06T01:17:36,747         |                                   ^
2024-01-06T01:17:36,759   MDAnalysis/lib/qcprot.c:21323:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:17:36,759   21323 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-01-06T01:17:36,759         |                                   ^
2024-01-06T01:17:36,771   MDAnalysis/lib/qcprot.c: In function ‘__pyx_fuse_1__pyx_f_10MDAnalysis_3lib_6qcprot_InnerProduct’:
2024-01-06T01:17:36,781   MDAnalysis/lib/qcprot.c:21793:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:17:36,782   21793 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-01-06T01:17:36,782         |                                   ^
2024-01-06T01:17:36,794   MDAnalysis/lib/qcprot.c:22001:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:17:36,794   22001 |     for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
2024-01-06T01:17:36,794         |                                   ^
2024-01-06T01:18:18,706   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:18:18,895   building 'MDAnalysis.lib._transformations' extension
2024-01-06T01:18:18,896   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src
2024-01-06T01:18:18,897   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations
2024-01-06T01:18:18,898   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/src/transformations/transformations.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:18:19,203   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:18:19,203                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:18:19,203                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:18:19,203                    from MDAnalysis/lib/src/transformations/transformations.c:73:
2024-01-06T01:18:19,204   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:18:19,204      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:18:19,204         |  ^~~~~~~
2024-01-06T01:18:19,265   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_superimposition_matrix’:
2024-01-06T01:18:19,265   MDAnalysis/lib/src/transformations/transformations.c:1837: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,265    1837 |                 #pragma vector always
2024-01-06T01:18:19,265         |
2024-01-06T01:18:19,269   MDAnalysis/lib/src/transformations/transformations.c:1954: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,269    1954 |                     #pragma vector always
2024-01-06T01:18:19,269         |
2024-01-06T01:18:19,269   MDAnalysis/lib/src/transformations/transformations.c:1978: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,270    1978 |                     #pragma vector always
2024-01-06T01:18:19,270         |
2024-01-06T01:18:19,310   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_vector_norm’:
2024-01-06T01:18:19,311   MDAnalysis/lib/src/transformations/transformations.c:3414: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,311    3414 |             #pragma vector always
2024-01-06T01:18:19,311         |
2024-01-06T01:18:19,314   MDAnalysis/lib/src/transformations/transformations.c:3495: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,314    3495 |                 #pragma vector always
2024-01-06T01:18:19,314         |
2024-01-06T01:18:19,319   MDAnalysis/lib/src/transformations/transformations.c: In function ‘py_unit_vector’:
2024-01-06T01:18:19,319   MDAnalysis/lib/src/transformations/transformations.c:3597: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,319    3597 |             #pragma vector always
2024-01-06T01:18:19,320         |
2024-01-06T01:18:19,320   MDAnalysis/lib/src/transformations/transformations.c:3602: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,320    3602 |             #pragma vector always
2024-01-06T01:18:19,320         |
2024-01-06T01:18:19,323   MDAnalysis/lib/src/transformations/transformations.c:3666: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,324    3666 |                 #pragma vector always
2024-01-06T01:18:19,324         |
2024-01-06T01:18:19,324   MDAnalysis/lib/src/transformations/transformations.c:3671: warning: ignoring ‘#pragma vector always’ [-Wunknown-pragmas]
2024-01-06T01:18:19,324    3671 |                 #pragma vector always
2024-01-06T01:18:19,324         |
2024-01-06T01:18:19,396   At top level:
2024-01-06T01:18:19,396   MDAnalysis/lib/src/transformations/transformations.c:910:1: warning: ‘PyConverter_DoubleVector4Copy’ defined but not used [-Wunused-function]
2024-01-06T01:18:19,396     910 | PyConverter_DoubleVector4Copy(
2024-01-06T01:18:19,396         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:18:19,397   MDAnalysis/lib/src/transformations/transformations.c:804:1: warning: ‘PyConverter_DoubleArrayOrNone’ defined but not used [-Wunused-function]
2024-01-06T01:18:19,397     804 | PyConverter_DoubleArrayOrNone(
2024-01-06T01:18:19,397         | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:18:19,397   MDAnalysis/lib/src/transformations/transformations.c:774:1: warning: ‘PyConverter_DoubleArray’ defined but not used [-Wunused-function]
2024-01-06T01:18:19,397     774 | PyConverter_DoubleArray(
2024-01-06T01:18:19,397         | ^~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:18:25,221   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:18:25,376   building 'MDAnalysis.lib.formats.libmdaxdr' extension
2024-01-06T01:18:25,378   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src
2024-01-06T01:18:25,380   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/libmdaxdr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:18:26,449   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:18:26,450                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:18:26,450                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:18:26,450                    from MDAnalysis/lib/formats/libmdaxdr.c:1247:
2024-01-06T01:18:26,450   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:18:26,450      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:18:26,450         |  ^~~~~~~
2024-01-06T01:18:26,485   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1253:
2024-01-06T01:18:26,485   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:18:26,485       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:18:26,485         |
2024-01-06T01:18:26,487   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1254:
2024-01-06T01:18:26,487   MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:18:26,487       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:18:26,487         |
2024-01-06T01:18:26,488   In file included from MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2024-01-06T01:18:26,488                    from MDAnalysis/lib/formats/libmdaxdr.c:1254:
2024-01-06T01:18:26,488   MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:18:26,488       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:18:26,488         |
2024-01-06T01:18:26,490   In file included from MDAnalysis/lib/formats/libmdaxdr.c:1255:
2024-01-06T01:18:26,490   MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:18:26,490       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:18:26,490         |
2024-01-06T01:19:21,838   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/trr_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:21,913   In file included from MDAnalysis/lib/formats/src/trr_seek.c:30:
2024-01-06T01:19:21,913   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:21,913       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:21,914         |
2024-01-06T01:19:21,918   In file included from MDAnalysis/lib/formats/src/trr_seek.c:31:
2024-01-06T01:19:21,918   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:21,919       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:21,919         |
2024-01-06T01:19:21,919   In file included from /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_trr.h:42,
2024-01-06T01:19:21,919                    from MDAnalysis/lib/formats/src/trr_seek.c:31:
2024-01-06T01:19:21,920   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:21,920       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:21,920         |
2024-01-06T01:19:21,923   MDAnalysis/lib/formats/src/trr_seek.c: In function ‘read_trr_n_frames’:
2024-01-06T01:19:21,923   MDAnalysis/lib/formats/src/trr_seek.c:39:27: warning: unused variable ‘totalframebytes’ [-Wunused-variable]
2024-01-06T01:19:21,924      39 |   int result, framebytes, totalframebytes;
2024-01-06T01:19:21,924         |                           ^~~~~~~~~~~~~~~
2024-01-06T01:19:21,924   MDAnalysis/lib/formats/src/trr_seek.c:38:15: warning: unused variable ‘lambda’ [-Wunused-variable]
2024-01-06T01:19:21,924      38 |   float time, lambda;
2024-01-06T01:19:21,924         |               ^~~~~~
2024-01-06T01:19:21,924   MDAnalysis/lib/formats/src/trr_seek.c:38:9: warning: unused variable ‘time’ [-Wunused-variable]
2024-01-06T01:19:21,925      38 |   float time, lambda;
2024-01-06T01:19:21,925         |         ^~~~
2024-01-06T01:19:22,028   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:22,138   In file included from MDAnalysis/lib/formats/src/xdrfile.c:62:
2024-01-06T01:19:22,139   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:22,139       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:22,139         |
2024-01-06T01:19:22,147   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofint’:
2024-01-06T01:19:22,147   MDAnalysis/lib/formats/src/xdrfile.c:501:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,148     501 |     while (size >= num && num_of_bits < 32)
2024-01-06T01:19:22,148         |                 ^~
2024-01-06T01:19:22,148   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘sizeofints’:
2024-01-06T01:19:22,148   MDAnalysis/lib/formats/src/xdrfile.c:547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,148     547 |     while (bytes[num_of_bytes] >= num)
2024-01-06T01:19:22,148         |                                ^~
2024-01-06T01:19:22,149   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘encodeints’:
2024-01-06T01:19:22,149   MDAnalysis/lib/formats/src/xdrfile.c:656:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,149     656 |     if (num_of_bits >= num_of_bytes * 8)
2024-01-06T01:19:22,150         |                     ^~
2024-01-06T01:19:22,150   MDAnalysis/lib/formats/src/xdrfile.c:658:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,150     658 |   for (i = 0; i < num_of_bytes; i++)
2024-01-06T01:19:22,150         |                 ^
2024-01-06T01:19:22,150   MDAnalysis/lib/formats/src/xdrfile.c:666:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,150     666 |   for (i = 0; i < num_of_bytes-1; i++)
2024-01-06T01:19:22,150         |                 ^
2024-01-06T01:19:22,151   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘decodebits’:
2024-01-06T01:19:22,151   MDAnalysis/lib/formats/src/xdrfile.c:706:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,151     706 |   if (lastbits < num_of_bits)
2024-01-06T01:19:22,151         |                ^
2024-01-06T01:19:22,152   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2024-01-06T01:19:22,152   MDAnalysis/lib/formats/src/xdrfile.c:816:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,153     816 |  if(size3>xfp->buf1size)
2024-01-06T01:19:22,153         |          ^
2024-01-06T01:19:22,154   MDAnalysis/lib/formats/src/xdrfile.c:868:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,154     868 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,154         |                   ^
2024-01-06T01:19:22,154   MDAnalysis/lib/formats/src/xdrfile.c:868:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-01-06T01:19:22,155     868 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,155         |                                     ^~~
2024-01-06T01:19:22,157   MDAnalysis/lib/formats/src/xdrfile.c:794:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,157     794 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-06T01:19:22,157         |                         ^~~~~~
2024-01-06T01:19:22,157   MDAnalysis/lib/formats/src/xdrfile.c:791:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,157     791 |  int smallidx, minidx, maxidx;
2024-01-06T01:19:22,157         |                ^~~~~~
2024-01-06T01:19:22,158   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2024-01-06T01:19:22,158   MDAnalysis/lib/formats/src/xdrfile.c:1012:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,158    1012 |  if(size3>xfp->buf1size)
2024-01-06T01:19:22,158         |          ^
2024-01-06T01:19:22,163   MDAnalysis/lib/formats/src/xdrfile.c:1135:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,163    1135 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2024-01-06T01:19:22,163         |                  ^
2024-01-06T01:19:22,163   MDAnalysis/lib/formats/src/xdrfile.c:1141:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,163    1141 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,163         |                   ^
2024-01-06T01:19:22,164   MDAnalysis/lib/formats/src/xdrfile.c:1141:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-01-06T01:19:22,164    1141 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,164         |                                     ^~~
2024-01-06T01:19:22,166   MDAnalysis/lib/formats/src/xdrfile.c:1273:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,167    1273 |  if(tmp==(unsigned int)buf2[0])
2024-01-06T01:19:22,167         |        ^~
2024-01-06T01:19:22,167   MDAnalysis/lib/formats/src/xdrfile.c:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,167    1001 |  int errval=1;
2024-01-06T01:19:22,167         |      ^~~~~~
2024-01-06T01:19:22,168   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2024-01-06T01:19:22,168   MDAnalysis/lib/formats/src/xdrfile.c:1313:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,169    1313 |  if(size3>xfp->buf1size)
2024-01-06T01:19:22,169         |          ^
2024-01-06T01:19:22,170   MDAnalysis/lib/formats/src/xdrfile.c:1368:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,171    1368 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,171         |                   ^
2024-01-06T01:19:22,171   MDAnalysis/lib/formats/src/xdrfile.c:1368:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-01-06T01:19:22,171    1368 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,171         |                                     ^~~
2024-01-06T01:19:22,174   MDAnalysis/lib/formats/src/xdrfile.c:1290:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,174    1290 |  int smallnum, smaller, larger, i, is_smaller, run;
2024-01-06T01:19:22,174         |                         ^~~~~~
2024-01-06T01:19:22,174   MDAnalysis/lib/formats/src/xdrfile.c:1287:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,174    1287 |  int smallidx, minidx, maxidx;
2024-01-06T01:19:22,175         |                ^~~~~~
2024-01-06T01:19:22,175   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2024-01-06T01:19:22,176   MDAnalysis/lib/formats/src/xdrfile.c:1504:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,176    1504 |  if(size3>xfp->buf1size) {
2024-01-06T01:19:22,176         |          ^
2024-01-06T01:19:22,182   MDAnalysis/lib/formats/src/xdrfile.c:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,182    1619 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2024-01-06T01:19:22,182         |                  ^
2024-01-06T01:19:22,182   MDAnalysis/lib/formats/src/xdrfile.c:1624:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2024-01-06T01:19:22,183    1624 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,183         |                   ^
2024-01-06T01:19:22,183   MDAnalysis/lib/formats/src/xdrfile.c:1624:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2024-01-06T01:19:22,183    1624 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2024-01-06T01:19:22,183         |                                     ^~~
2024-01-06T01:19:22,187   MDAnalysis/lib/formats/src/xdrfile.c:1734:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2024-01-06T01:19:22,187    1734 |  if(tmp==(unsigned int)buf2[0])
2024-01-06T01:19:22,187         |        ^~
2024-01-06T01:19:22,187   MDAnalysis/lib/formats/src/xdrfile.c:1494:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2024-01-06T01:19:22,187    1494 |  int errval=1;
2024-01-06T01:19:22,188         |      ^~~~~~
2024-01-06T01:19:22,201   MDAnalysis/lib/formats/src/xdrfile.c: At top level:
2024-01-06T01:19:22,202   MDAnalysis/lib/formats/src/xdrfile.c:2535:3: warning: initialization of ‘unsigned int (*)(XDR *)’ from incompatible pointer type ‘int64_t (*)(XDR *)’ {aka ‘long long int (*)(XDR *)’} [-Wincompatible-pointer-types]
2024-01-06T01:19:22,202    2535 |   xdrstdio_getpos,  /* get offset in the stream */
2024-01-06T01:19:22,202         |   ^~~~~~~~~~~~~~~
2024-01-06T01:19:22,202   MDAnalysis/lib/formats/src/xdrfile.c:2535:3: note: (near initialization for ‘xdrstdio_ops.x_getpostn’)
2024-01-06T01:19:22,203   MDAnalysis/lib/formats/src/xdrfile.c:2536:3: warning: initialization of ‘int (*)(XDR *, unsigned int)’ from incompatible pointer type ‘int (*)(XDR *, int64_t,  int)’ {aka ‘int (*)(XDR *, long long int,  int)’} [-Wincompatible-pointer-types]
2024-01-06T01:19:22,203    2536 |   xdrstdio_setpos,  /* set offset in the stream */
2024-01-06T01:19:22,203         |   ^~~~~~~~~~~~~~~
2024-01-06T01:19:22,204   MDAnalysis/lib/formats/src/xdrfile.c:2536:3: note: (near initialization for ‘xdrstdio_ops.x_setpostn’)
2024-01-06T01:19:23,846   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_write_string’:
2024-01-06T01:19:23,847   MDAnalysis/lib/formats/src/xdrfile.c:2361:5: warning: ‘size’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:23,847    2361 |  if (size > maxsize)
2024-01-06T01:19:23,847         |     ^
2024-01-06T01:19:23,848   MDAnalysis/lib/formats/src/xdrfile.c:2335:15: note: ‘size’ was declared here
2024-01-06T01:19:23,849    2335 |  unsigned int size;
2024-01-06T01:19:23,849         |               ^~~~
2024-01-06T01:19:24,289   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2024-01-06T01:19:24,290   MDAnalysis/lib/formats/src/xdrfile.c:1157:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:24,290    1157 |    abs(thiscoord[2] - prevcoord[2]) < larger) {
2024-01-06T01:19:24,290         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:24,290   MDAnalysis/lib/formats/src/xdrfile.c:1156:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:24,291    1156 |    abs(thiscoord[1] - prevcoord[1]) < larger &&
2024-01-06T01:19:24,291         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:24,291   MDAnalysis/lib/formats/src/xdrfile.c:1155:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:24,291    1155 |    abs(thiscoord[0] - prevcoord[0]) < larger &&
2024-01-06T01:19:24,291         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:25,045   MDAnalysis/lib/formats/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2024-01-06T01:19:25,046   MDAnalysis/lib/formats/src/xdrfile.c:1639:21: warning: ‘prevcoord[2]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:25,046    1639 |    abs(thiscoord[2] - prevcoord[2]) < larger) {
2024-01-06T01:19:25,046         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:25,047   MDAnalysis/lib/formats/src/xdrfile.c:1638:21: warning: ‘prevcoord[1]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:25,047    1638 |    abs(thiscoord[1] - prevcoord[1]) < larger &&
2024-01-06T01:19:25,047         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:25,047   MDAnalysis/lib/formats/src/xdrfile.c:1637:21: warning: ‘prevcoord[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2024-01-06T01:19:25,048    1637 |    abs(thiscoord[0] - prevcoord[0]) < larger &&
2024-01-06T01:19:25,048         |        ~~~~~~~~~~~~~^~~~~~~~~~~~~~
2024-01-06T01:19:26,073   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:26,144   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:38:
2024-01-06T01:19:26,145   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:26,145       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:26,145         |
2024-01-06T01:19:26,148   In file included from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2024-01-06T01:19:26,149   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:26,149       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:26,149         |
2024-01-06T01:19:26,149   In file included from /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_trr.h:42,
2024-01-06T01:19:26,149                    from MDAnalysis/lib/formats/src/xdrfile_trr.c:39:
2024-01-06T01:19:26,149   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:26,150       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:26,150         |
2024-01-06T01:19:26,151   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘do_trnheader’:
2024-01-06T01:19:26,151   MDAnalysis/lib/formats/src/xdrfile_trr.c:78:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-06T01:19:26,151      78 |     if (slen != strlen(version) + 1)
2024-01-06T01:19:26,151         |              ^~
2024-01-06T01:19:26,151   MDAnalysis/lib/formats/src/xdrfile_trr.c:86:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2024-01-06T01:19:26,151      86 |     if (xdrfile_write_string(version, xd) != (strlen(version) + 1))
2024-01-06T01:19:26,152         |                                           ^~
2024-01-06T01:19:26,166   MDAnalysis/lib/formats/src/xdrfile_trr.c: In function ‘write_trr’:
2024-01-06T01:19:26,167   MDAnalysis/lib/formats/src/xdrfile_trr.c:408:10: warning: ‘plcholder’ is used uninitialized in this function [-Wuninitialized]
2024-01-06T01:19:26,167     408 |   return do_trn(xd, 0, &step, &t, &lambda, box, &natoms, x, v, f, plcholder);
2024-01-06T01:19:26,167         |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:19:27,240   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:27,286   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:30:
2024-01-06T01:19:27,287   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,287       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,287         |
2024-01-06T01:19:27,297   In file included from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2024-01-06T01:19:27,297   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,298       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,298         |
2024-01-06T01:19:27,298   In file included from /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2024-01-06T01:19:27,298                    from MDAnalysis/lib/formats/src/xdrfile_xtc.c:31:
2024-01-06T01:19:27,299   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,299       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,299         |
2024-01-06T01:19:27,416   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats -I/usr/include/python3.9 -c MDAnalysis/lib/formats/src/xtc_seek.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:27,462   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:25:
2024-01-06T01:19:27,462   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,463       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,463         |
2024-01-06T01:19:27,472   In file included from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2024-01-06T01:19:27,472   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,472       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,472         |
2024-01-06T01:19:27,473   In file included from /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile_xtc.h:43,
2024-01-06T01:19:27,473                    from MDAnalysis/lib/formats/src/xtc_seek.c:26:
2024-01-06T01:19:27,473   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/formats/include/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2024-01-06T01:19:27,473       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2024-01-06T01:19:27,473         |
2024-01-06T01:19:27,626   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:19:27,874   building 'MDAnalysis.lib.formats.cython_util' extension
2024-01-06T01:19:27,874   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/formats/cython_util.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -std=c99 -O3 -funroll-loops -fsigned-zeros
2024-01-06T01:19:28,194   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:19:28,194                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:19:28,194                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:19:28,194                    from MDAnalysis/lib/formats/cython_util.c:1237:
2024-01-06T01:19:28,194   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:19:28,194      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:19:28,195         |  ^~~~~~~
2024-01-06T01:19:52,705   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:19:52,866   building 'MDAnalysis.analysis.encore.cutils' extension
2024-01-06T01:19:52,867   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis
2024-01-06T01:19:52,867   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore
2024-01-06T01:19:52,868   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/cutils.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -std=c99 -funroll-loops -fsigned-zeros -O3
2024-01-06T01:19:53,174   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:19:53,175                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:19:53,175                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:19:53,175                    from MDAnalysis/analysis/encore/cutils.c:1220:
2024-01-06T01:19:53,175   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:19:53,175      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:19:53,175         |  ^~~~~~~
2024-01-06T01:19:58,441   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:19:58,556   building 'MDAnalysis.analysis.encore.clustering.affinityprop' extension
2024-01-06T01:19:58,557   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering
2024-01-06T01:19:58,558   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src
2024-01-06T01:19:58,559   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/affinityprop.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o -std=c99 -funroll-loops -fsigned-zeros -O3
2024-01-06T01:19:58,875   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:19:58,875                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:19:58,876                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:19:58,876                    from MDAnalysis/analysis/encore/clustering/affinityprop.c:1226:
2024-01-06T01:19:58,876   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:19:58,876      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:19:58,876         |  ^~~~~~~
2024-01-06T01:20:15,193   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/clustering/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/clustering/src/ap.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -std=c99 -funroll-loops -fsigned-zeros -O3
2024-01-06T01:20:16,215   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:20:16,355   building 'MDAnalysis.analysis.encore.dimensionality_reduction.stochasticproxembed' extension
2024-01-06T01:20:16,357   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:20:16,358   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src
2024-01-06T01:20:16,359   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o -std=c99 -funroll-loops -fsigned-zeros -O3
2024-01-06T01:20:17,070   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/analysis/encore/dimensionality_reduction/include -I/usr/include/python3.9 -c MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -std=c99 -funroll-loops -fsigned-zeros -O3
2024-01-06T01:20:17,376   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:20:17,376                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:20:17,376                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:20:17,377                    from MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c:1226:
2024-01-06T01:20:17,377   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:20:17,377      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:20:17,377         |  ^~~~~~~
2024-01-06T01:20:25,227   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.o build/temp.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:20:25,375   building 'MDAnalysis.lib._cutil' extension
2024-01-06T01:20:25,377   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/_cutil.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2024-01-06T01:20:25,653   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:20:25,653                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:20:25,653                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:20:25,653                    from MDAnalysis/lib/_cutil.cpp:1238:
2024-01-06T01:20:25,653   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:20:25,653      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:20:25,654         |  ^~~~~~~
2024-01-06T01:20:28,762   In file included from MDAnalysis/lib/_cutil.cpp:1264:
2024-01-06T01:20:28,763   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,763     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,763         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,763   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,763     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,763         |             ^~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,764   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,764     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,764         |             ^~~~~~~~~~~~~~
2024-01-06T01:20:28,764   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,764     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,765         |             ^~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,765   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,765     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,765         |             ^~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,765   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,765     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,766         |             ^~~~~~~~~~~
2024-01-06T01:20:28,766   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,766     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,766         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,766   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,766     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,767         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,767   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,767     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2024-01-06T01:20:28,767         |             ^~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,767   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,768     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2024-01-06T01:20:28,768         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,768   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,768     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2024-01-06T01:20:28,768         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,768   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,768     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2024-01-06T01:20:28,769         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,769   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,769     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2024-01-06T01:20:28,769         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,769   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,769     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2024-01-06T01:20:28,769         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,770   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,770     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2024-01-06T01:20:28,770         |             ^~~~~~~~~~~~~~~~~~~~
2024-01-06T01:20:28,770   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:116:13: warning: ‘void _ortho_pbc(float (*)[3], uint64_t, float*)’ defined but not used [-Wunused-function]
2024-01-06T01:20:28,770     116 | static void _ortho_pbc(coordinate* coords, uint64_t numcoords, float* box)
2024-01-06T01:20:28,770         |             ^~~~~~~~~~
2024-01-06T01:21:05,788   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.o -L/usr/lib -lm -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:21:06,146   building 'MDAnalysis.lib._augment' extension
2024-01-06T01:21:06,147   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/lib/_augment.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2024-01-06T01:21:06,381   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:21:06,381                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:21:06,381                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:21:06,381                    from MDAnalysis/lib/_augment.cpp:1233:
2024-01-06T01:21:06,382   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:21:06,382      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:21:06,382         |  ^~~~~~~
2024-01-06T01:21:37,550   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:21:37,861   building 'MDAnalysis.lib.nsgrid' extension
2024-01-06T01:21:37,862   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include -I/usr/include/python3.9 -c MDAnalysis/lib/nsgrid.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2024-01-06T01:21:40,594   In file included from MDAnalysis/lib/nsgrid.cpp:1231:
2024-01-06T01:21:40,595   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:827:13: warning: ‘void _calc_dihedral_triclinic(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,595     827 | static void _calc_dihedral_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,595         |             ^~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,595   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:791:13: warning: ‘void _calc_dihedral_ortho(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,595     791 | static void _calc_dihedral_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,596         |             ^~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,596   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:764:13: warning: ‘void _calc_dihedral(float (*)[3], float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,596     764 | static void _calc_dihedral(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,596         |             ^~~~~~~~~~~~~~
2024-01-06T01:21:40,596   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:689:13: warning: ‘void _calc_angle_triclinic(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,597     689 | static void _calc_angle_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,597         |             ^~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,597   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:647:13: warning: ‘void _calc_angle_ortho(float (*)[3], float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,597     647 | static void _calc_angle_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,597         |             ^~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,597   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:618:13: warning: ‘void _calc_angle(float (*)[3], float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,598     618 | static void _calc_angle(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,598         |             ^~~~~~~~~~~
2024-01-06T01:21:40,598   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:596:13: warning: ‘void _calc_bond_distance_triclinic(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,598     596 | static void _calc_bond_distance_triclinic(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,598         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,598   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:573:13: warning: ‘void _calc_bond_distance_ortho(float (*)[3], float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,598     573 | static void _calc_bond_distance_ortho(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,599         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,599   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:557:13: warning: ‘void _calc_bond_distance(float (*)[3], float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,599     557 | static void _calc_bond_distance(coordinate* atom1, coordinate* atom2,
2024-01-06T01:21:40,599         |             ^~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,599   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:505:13: warning: ‘void _calc_self_distance_array_triclinic(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,599     505 | static void _calc_self_distance_array_triclinic(coordinate* ref, uint64_t numref,
2024-01-06T01:21:40,599         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,600   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:472:13: warning: ‘void _calc_self_distance_array_ortho(float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,600     472 | static void _calc_self_distance_array_ortho(coordinate* ref, uint64_t numref,
2024-01-06T01:21:40,600         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,600   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:448:13: warning: ‘void _calc_self_distance_array(float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,600     448 | static void _calc_self_distance_array(coordinate* ref, uint64_t numref,
2024-01-06T01:21:40,600         |             ^~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,601   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:424:13: warning: ‘void _calc_distance_array_triclinic(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,601     424 | static void _calc_distance_array_triclinic(coordinate* ref, uint64_t numref,
2024-01-06T01:21:40,601         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,601   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:399:13: warning: ‘void _calc_distance_array_ortho(float (*)[3], uint64_t, float (*)[3], uint64_t, float*, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,601     399 | static void _calc_distance_array_ortho(coordinate* ref, uint64_t numref, coordinate* conf,
2024-01-06T01:21:40,601         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:21:40,601   /tmp/pip-wheel-raqmtpr6/mdanalysis_b7ac0342b0604ab78c910e3321d9ef88/MDAnalysis/lib/include/calc_distances.h:381:13: warning: ‘void _calc_distance_array(float (*)[3], uint64_t, float (*)[3], uint64_t, double*)’ defined but not used [-Wunused-function]
2024-01-06T01:21:40,601     381 | static void _calc_distance_array(coordinate* ref, uint64_t numref, coordinate* conf,
2024-01-06T01:21:40,602         |             ^~~~~~~~~~~~~~~~~~~~
2024-01-06T01:22:12,377   In file included from /usr/include/c++/10/vector:72,
2024-01-06T01:22:12,378                    from MDAnalysis/lib/nsgrid.cpp:1229:
2024-01-06T01:22:12,378   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-01-06T01:22:12,378   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-01-06T01:22:12,378     426 |       vector<_Tp, _Alloc>::
2024-01-06T01:22:12,378         |       ^~~~~~~~~~~~~~~~~~~
2024-01-06T01:22:12,415   In file included from /usr/include/c++/10/vector:67,
2024-01-06T01:22:12,415                    from MDAnalysis/lib/nsgrid.cpp:1229:
2024-01-06T01:22:12,415   /usr/include/c++/10/bits/stl_vector.h: In function ‘void __pyx_f_10MDAnalysis_3lib_6nsgrid_9NSResults_add_neighbors(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, int, int, double)’:
2024-01-06T01:22:12,416   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-06T01:22:12,416    1198 |    _M_realloc_insert(end(), __x);
2024-01-06T01:22:12,416         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2024-01-06T01:22:12,456   In file included from /usr/include/c++/10/vector:72,
2024-01-06T01:22:12,457                    from MDAnalysis/lib/nsgrid.cpp:1229:
2024-01-06T01:22:12,457   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]’:
2024-01-06T01:22:12,457   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2024-01-06T01:22:12,457     426 |       vector<_Tp, _Alloc>::
2024-01-06T01:22:12,457         |       ^~~~~~~~~~~~~~~~~~~
2024-01-06T01:22:12,706   /usr/include/c++/10/bits/vector.tcc: In function ‘PyObject* __pyx_f_10MDAnalysis_3lib_6nsgrid___pyx_unpickle_NSResults__set_state(__pyx_obj_10MDAnalysis_3lib_6nsgrid_NSResults*, PyObject*)’:
2024-01-06T01:22:12,707   /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2024-01-06T01:22:12,707     121 |    _M_realloc_insert(end(), std::forward<_Args>(__args)...);
2024-01-06T01:22:12,707         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2024-01-06T01:22:16,616   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:22:16,966   building 'MDAnalysis.coordinates.timestep' extension
2024-01-06T01:22:16,967   creating build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates
2024-01-06T01:22:16,968   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c MDAnalysis/coordinates/timestep.cpp -o build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -O3 -funroll-loops -fsigned-zeros -std=c++11
2024-01-06T01:22:17,204   In file included from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1960,
2024-01-06T01:22:17,204                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2024-01-06T01:22:17,205                    from /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2024-01-06T01:22:17,205                    from MDAnalysis/coordinates/timestep.cpp:1234:
2024-01-06T01:22:17,205   /tmp/pip-build-env-4sz711kd/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2024-01-06T01:22:17,205      17 | #warning "Using deprecated NumPy API, disable it with " \
2024-01-06T01:22:17,205         |  ^~~~~~~
2024-01-06T01:22:42,527   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so
2024-01-06T01:22:42,749   installing to build/bdist.linux-armv7l/wheel
2024-01-06T01:22:42,750   running install
2024-01-06T01:22:42,775   running install_lib
2024-01-06T01:22:42,781   creating build/bdist.linux-armv7l
2024-01-06T01:22:42,782   creating build/bdist.linux-armv7l/wheel
2024-01-06T01:22:42,784   creating build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:42,785   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,787   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,790   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,792   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,795   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,797   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,800   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,802   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,805   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,808   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GROParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,810   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,812   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tables.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,816   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,818   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,821   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,824   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,826   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,828   creating build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2024-01-06T01:22:42,829   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2024-01-06T01:22:42,833   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2024-01-06T01:22:42,835   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2024-01-06T01:22:42,837   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology/tpr
2024-01-06T01:22:42,840   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,843   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,845   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/guessers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,848   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,851   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,853   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,856   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,858   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,861   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,863   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,866   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,868   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/topology
2024-01-06T01:22:42,871   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,873   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/gnm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,876   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2024-01-06T01:22:42,877   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/hole.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2024-01-06T01:22:42,881   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/templates.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2024-01-06T01:22:42,883   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2024-01-06T01:22:42,886   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hole2
2024-01-06T01:22:42,889   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2024-01-06T01:22:42,891   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2024-01-06T01:22:42,893   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hbonds
2024-01-06T01:22:42,895   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/contacts.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,898   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,902   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2024-01-06T01:22:42,903   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2024-01-06T01:22:42,905   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/legacy
2024-01-06T01:22:42,908   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,911   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/align.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,915   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,917   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rdf.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,920   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,923   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,926   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:22:42,927   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:22:42,932   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:22:42,936   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:22:42,940   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/hydrogenbonds
2024-01-06T01:22:42,943   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/bat.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,946   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:42,949   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:42,950   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:42,953   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:42,956   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:42,968   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:42,969   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:42,973   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:42,976   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:42,979   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2024-01-06T01:22:42,980   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/include
2024-01-06T01:22:42,984   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2024-01-06T01:22:42,985   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering/src
2024-01-06T01:22:42,988   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:43,003   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:43,017   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:43,020   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/clustering
2024-01-06T01:22:43,023   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,026   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,027   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,030   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,032   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,035   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,046   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2024-01-06T01:22:43,047   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include
2024-01-06T01:22:43,051   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2024-01-06T01:22:43,052   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src
2024-01-06T01:22:43,055   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,057   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore/dimensionality_reduction
2024-01-06T01:22:43,069   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,072   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,075   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,078   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,081   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/encore
2024-01-06T01:22:43,091   creating build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2024-01-06T01:22:43,092   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2024-01-06T01:22:43,094   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2024-01-06T01:22:43,098   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2024-01-06T01:22:43,101   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis/data
2024-01-06T01:22:43,105   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/polymer.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,108   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,110   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,113   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,116   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/density.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,118   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/psa.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,122   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,125   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,127   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,129   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/rms.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,132   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,135   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/pca.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,138   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/analysis/msd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/analysis
2024-01-06T01:22:43,141   creating build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2024-01-06T01:22:43,142   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2024-01-06T01:22:43,144   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2024-01-06T01:22:43,147   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/visualization
2024-01-06T01:22:43,149   creating build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,150   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/vmd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,152   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/pymol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,153   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/jmol.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,155   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,157   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/gromacs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,159   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,162   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/selections/charmm.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/selections
2024-01-06T01:22:43,165   creating build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,166   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,169   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,172   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,175   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,178   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/auxiliary/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/auxiliary
2024-01-06T01:22:43,181   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/authors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:43,184   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:43,187   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/units.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:43,191   creating build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2024-01-06T01:22:43,192   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2024-01-06T01:22:43,194   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/tests/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/tests
2024-01-06T01:22:43,197   creating build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,199   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/selection.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,203   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topology.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,206   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/_get_readers.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,209   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,213   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,217   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,220   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/universe.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,224   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/accessors.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,227   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/core/groups.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/core
2024-01-06T01:22:43,233   creating build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,235   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,238   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,241   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,244   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,246   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,249   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,251   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,254   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,257   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/chain.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,260   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,262   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,265   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,268   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,298   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/null.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,300   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,321   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,324   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,327   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,330   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,333   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,336   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,339   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,341   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,344   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,347   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/core.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,350   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,353   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,355   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,358   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,361   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,367   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,370   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,372   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,374   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/memory.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,377   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,379   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,382   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,383   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/coordinates
2024-01-06T01:22:43,386   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/exceptions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:43,389   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,390   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,391   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,393   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,396   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,462   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,464   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,467   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,470   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,471   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,476   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,480   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,484   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,488   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,492   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,494   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,495   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/include
2024-01-06T01:22:43,498   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,545   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,546   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,548   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,550   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,553   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,555   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats/src
2024-01-06T01:22:43,557   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,583   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,614   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,616   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,659   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,678   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/formats
2024-01-06T01:22:43,681   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2024-01-06T01:22:43,682   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/libmdanalysis
2024-01-06T01:22:43,684   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,709   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,711   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,714   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,754   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,784   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,787   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,791   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,793   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,837   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,840   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,869   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/log.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,872   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/util.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,875   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,901   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/mdamath.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,903   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,905   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,907   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,941   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2024-01-06T01:22:43,943   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/include
2024-01-06T01:22:43,945   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,947   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/transformations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,951   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:43,964   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src
2024-01-06T01:22:43,965   creating build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2024-01-06T01:22:43,966   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2024-01-06T01:22:43,968   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2024-01-06T01:22:43,973   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib/src/transformations
2024-01-06T01:22:43,975   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,013   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,016   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/distances.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,019   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,030   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/qcprot.c -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,055   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,085   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/correlations.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,087   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_distopia.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,089   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,091   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,093   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/MDAnalysis/lib
2024-01-06T01:22:44,100   creating build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,101   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/rotate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,104   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/nojump.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,106   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,108   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,111   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,113   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/fit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,115   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,117   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/wrap.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,119   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/transformations/translate.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/transformations
2024-01-06T01:22:44,122   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/version.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:44,126   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/due.py -> build/bdist.linux-armv7l/wheel/MDAnalysis
2024-01-06T01:22:44,129   creating build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,131   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,135   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,139   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,143   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,146   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/__init__.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,149   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,152   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/base.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,155   copying build/lib.linux-armv7l-cpython-39/MDAnalysis/converters/RDKit.py -> build/bdist.linux-armv7l/wheel/MDAnalysis/converters
2024-01-06T01:22:44,160   running install_egg_info
2024-01-06T01:22:44,169   Copying MDAnalysis.egg-info to build/bdist.linux-armv7l/wheel/MDAnalysis-2.7.0-py3.9.egg-info
2024-01-06T01:22:44,424   running install_scripts
2024-01-06T01:22:44,491   creating build/bdist.linux-armv7l/wheel/MDAnalysis-2.7.0.dist-info/WHEEL
2024-01-06T01:22:44,494   creating '/tmp/pip-wheel-fx_6rcfx/.tmp-iwi10xin/MDAnalysis-2.7.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-06T01:22:44,497   adding 'MDAnalysis/__init__.py'
2024-01-06T01:22:44,498   adding 'MDAnalysis/authors.py'
2024-01-06T01:22:44,500   adding 'MDAnalysis/due.py'
2024-01-06T01:22:44,501   adding 'MDAnalysis/exceptions.py'
2024-01-06T01:22:44,504   adding 'MDAnalysis/units.py'
2024-01-06T01:22:44,505   adding 'MDAnalysis/version.py'
2024-01-06T01:22:44,507   adding 'MDAnalysis/analysis/__init__.py'
2024-01-06T01:22:44,516   adding 'MDAnalysis/analysis/align.py'
2024-01-06T01:22:44,518   adding 'MDAnalysis/analysis/atomicdistances.py'
2024-01-06T01:22:44,522   adding 'MDAnalysis/analysis/base.py'
2024-01-06T01:22:44,527   adding 'MDAnalysis/analysis/bat.py'
2024-01-06T01:22:44,531   adding 'MDAnalysis/analysis/contacts.py'
2024-01-06T01:22:44,539   adding 'MDAnalysis/analysis/density.py'
2024-01-06T01:22:44,542   adding 'MDAnalysis/analysis/dielectric.py'
2024-01-06T01:22:44,546   adding 'MDAnalysis/analysis/diffusionmap.py'
2024-01-06T01:22:44,551   adding 'MDAnalysis/analysis/dihedrals.py'
2024-01-06T01:22:44,554   adding 'MDAnalysis/analysis/distances.py'
2024-01-06T01:22:44,557   adding 'MDAnalysis/analysis/gnm.py'
2024-01-06T01:22:44,562   adding 'MDAnalysis/analysis/helix_analysis.py'
2024-01-06T01:22:44,566   adding 'MDAnalysis/analysis/leaflet.py'
2024-01-06T01:22:44,569   adding 'MDAnalysis/analysis/lineardensity.py'
2024-01-06T01:22:44,573   adding 'MDAnalysis/analysis/msd.py'
2024-01-06T01:22:44,577   adding 'MDAnalysis/analysis/nucleicacids.py'
2024-01-06T01:22:44,581   adding 'MDAnalysis/analysis/nuclinfo.py'
2024-01-06T01:22:44,588   adding 'MDAnalysis/analysis/pca.py'
2024-01-06T01:22:44,591   adding 'MDAnalysis/analysis/polymer.py'
2024-01-06T01:22:44,607   adding 'MDAnalysis/analysis/psa.py'
2024-01-06T01:22:44,612   adding 'MDAnalysis/analysis/rdf.py'
2024-01-06T01:22:44,619   adding 'MDAnalysis/analysis/rms.py'
2024-01-06T01:22:44,625   adding 'MDAnalysis/analysis/waterdynamics.py'
2024-01-06T01:22:44,626   adding 'MDAnalysis/analysis/data/__init__.py'
2024-01-06T01:22:44,628   adding 'MDAnalysis/analysis/data/filenames.py'
2024-01-06T01:22:44,631   adding 'MDAnalysis/analysis/data/janin_ref_data.npy'
2024-01-06T01:22:44,637   adding 'MDAnalysis/analysis/data/rama_ref_data.npy'
2024-01-06T01:22:44,639   adding 'MDAnalysis/analysis/encore/__init__.py'
2024-01-06T01:22:44,641   adding 'MDAnalysis/analysis/encore/bootstrap.py'
2024-01-06T01:22:44,643   adding 'MDAnalysis/analysis/encore/confdistmatrix.py'
2024-01-06T01:22:44,645   adding 'MDAnalysis/analysis/encore/covariance.py'
2024-01-06T01:22:44,679   adding 'MDAnalysis/analysis/encore/cutils.c'
2024-01-06T01:22:44,744   adding 'MDAnalysis/analysis/encore/cutils.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:44,747   adding 'MDAnalysis/analysis/encore/cutils.pyx'
2024-01-06T01:22:44,754   adding 'MDAnalysis/analysis/encore/similarity.py'
2024-01-06T01:22:44,756   adding 'MDAnalysis/analysis/encore/utils.py'
2024-01-06T01:22:44,759   adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py'
2024-01-06T01:22:44,761   adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py'
2024-01-06T01:22:44,762   adding 'MDAnalysis/analysis/encore/clustering/__init__.py'
2024-01-06T01:22:44,806   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c'
2024-01-06T01:22:44,943   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:44,949   adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx'
2024-01-06T01:22:44,951   adding 'MDAnalysis/analysis/encore/clustering/cluster.py'
2024-01-06T01:22:44,953   adding 'MDAnalysis/analysis/encore/clustering/include/ap.h'
2024-01-06T01:22:44,955   adding 'MDAnalysis/analysis/encore/clustering/src/ap.c'
2024-01-06T01:22:44,957   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py'
2024-01-06T01:22:44,959   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py'
2024-01-06T01:22:44,960   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py'
2024-01-06T01:22:44,996   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c'
2024-01-06T01:22:45,089   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:45,093   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx'
2024-01-06T01:22:45,095   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h'
2024-01-06T01:22:45,097   adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c'
2024-01-06T01:22:45,099   adding 'MDAnalysis/analysis/hbonds/__init__.py'
2024-01-06T01:22:45,100   adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py'
2024-01-06T01:22:45,102   adding 'MDAnalysis/analysis/hole2/__init__.py'
2024-01-06T01:22:45,108   adding 'MDAnalysis/analysis/hole2/hole.py'
2024-01-06T01:22:45,110   adding 'MDAnalysis/analysis/hole2/templates.py'
2024-01-06T01:22:45,113   adding 'MDAnalysis/analysis/hole2/utils.py'
2024-01-06T01:22:45,115   adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py'
2024-01-06T01:22:45,119   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py'
2024-01-06T01:22:45,123   adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py'
2024-01-06T01:22:45,132   adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py'
2024-01-06T01:22:45,135   adding 'MDAnalysis/analysis/legacy/__init__.py'
2024-01-06T01:22:45,138   adding 'MDAnalysis/analysis/legacy/x3dna.py'
2024-01-06T01:22:45,142   adding 'MDAnalysis/auxiliary/EDR.py'
2024-01-06T01:22:45,144   adding 'MDAnalysis/auxiliary/XVG.py'
2024-01-06T01:22:45,147   adding 'MDAnalysis/auxiliary/__init__.py'
2024-01-06T01:22:45,152   adding 'MDAnalysis/auxiliary/base.py'
2024-01-06T01:22:45,154   adding 'MDAnalysis/auxiliary/core.py'
2024-01-06T01:22:45,156   adding 'MDAnalysis/converters/OpenMM.py'
2024-01-06T01:22:45,158   adding 'MDAnalysis/converters/OpenMMParser.py'
2024-01-06T01:22:45,160   adding 'MDAnalysis/converters/ParmEd.py'
2024-01-06T01:22:45,162   adding 'MDAnalysis/converters/ParmEdParser.py'
2024-01-06T01:22:45,168   adding 'MDAnalysis/converters/RDKit.py'
2024-01-06T01:22:45,170   adding 'MDAnalysis/converters/RDKitParser.py'
2024-01-06T01:22:45,172   adding 'MDAnalysis/converters/__init__.py'
2024-01-06T01:22:45,173   adding 'MDAnalysis/converters/base.py'
2024-01-06T01:22:45,176   adding 'MDAnalysis/coordinates/CRD.py'
2024-01-06T01:22:45,179   adding 'MDAnalysis/coordinates/DCD.py'
2024-01-06T01:22:45,181   adding 'MDAnalysis/coordinates/DLPoly.py'
2024-01-06T01:22:45,182   adding 'MDAnalysis/coordinates/DMS.py'
2024-01-06T01:22:45,184   adding 'MDAnalysis/coordinates/FHIAIMS.py'
2024-01-06T01:22:45,186   adding 'MDAnalysis/coordinates/GMS.py'
2024-01-06T01:22:45,188   adding 'MDAnalysis/coordinates/GRO.py'
2024-01-06T01:22:45,190   adding 'MDAnalysis/coordinates/GSD.py'
2024-01-06T01:22:45,198   adding 'MDAnalysis/coordinates/H5MD.py'
2024-01-06T01:22:45,200   adding 'MDAnalysis/coordinates/INPCRD.py'
2024-01-06T01:22:45,203   adding 'MDAnalysis/coordinates/LAMMPS.py'
2024-01-06T01:22:45,205   adding 'MDAnalysis/coordinates/MMTF.py'
2024-01-06T01:22:45,207   adding 'MDAnalysis/coordinates/MOL2.py'
2024-01-06T01:22:45,209   adding 'MDAnalysis/coordinates/NAMDBIN.py'
2024-01-06T01:22:45,216   adding 'MDAnalysis/coordinates/PDB.py'
2024-01-06T01:22:45,218   adding 'MDAnalysis/coordinates/PDBQT.py'
2024-01-06T01:22:45,221   adding 'MDAnalysis/coordinates/PQR.py'
2024-01-06T01:22:45,222   adding 'MDAnalysis/coordinates/ParmEd.py'
2024-01-06T01:22:45,225   adding 'MDAnalysis/coordinates/TNG.py'
2024-01-06T01:22:45,227   adding 'MDAnalysis/coordinates/TRC.py'
2024-01-06T01:22:45,233   adding 'MDAnalysis/coordinates/TRJ.py'
2024-01-06T01:22:45,235   adding 'MDAnalysis/coordinates/TRR.py'
2024-01-06T01:22:45,238   adding 'MDAnalysis/coordinates/TRZ.py'
2024-01-06T01:22:45,239   adding 'MDAnalysis/coordinates/TXYZ.py'
2024-01-06T01:22:45,242   adding 'MDAnalysis/coordinates/XDR.py'
2024-01-06T01:22:45,243   adding 'MDAnalysis/coordinates/XTC.py'
2024-01-06T01:22:45,246   adding 'MDAnalysis/coordinates/XYZ.py'
2024-01-06T01:22:45,251   adding 'MDAnalysis/coordinates/__init__.py'
2024-01-06T01:22:45,259   adding 'MDAnalysis/coordinates/base.py'
2024-01-06T01:22:45,262   adding 'MDAnalysis/coordinates/chain.py'
2024-01-06T01:22:45,265   adding 'MDAnalysis/coordinates/chemfiles.py'
2024-01-06T01:22:45,267   adding 'MDAnalysis/coordinates/core.py'
2024-01-06T01:22:45,270   adding 'MDAnalysis/coordinates/memory.py'
2024-01-06T01:22:45,271   adding 'MDAnalysis/coordinates/null.py'
2024-01-06T01:22:45,348   adding 'MDAnalysis/coordinates/timestep.cpp'
2024-01-06T01:22:45,607   adding 'MDAnalysis/coordinates/timestep.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:45,616   adding 'MDAnalysis/coordinates/timestep.pxd'
2024-01-06T01:22:45,620   adding 'MDAnalysis/coordinates/timestep.pyx'
2024-01-06T01:22:45,622   adding 'MDAnalysis/core/__init__.py'
2024-01-06T01:22:45,624   adding 'MDAnalysis/core/_get_readers.py'
2024-01-06T01:22:45,625   adding 'MDAnalysis/core/accessors.py'
2024-01-06T01:22:45,647   adding 'MDAnalysis/core/groups.py'
2024-01-06T01:22:45,654   adding 'MDAnalysis/core/selection.py'
2024-01-06T01:22:45,657   adding 'MDAnalysis/core/topology.py'
2024-01-06T01:22:45,668   adding 'MDAnalysis/core/topologyattrs.py'
2024-01-06T01:22:45,673   adding 'MDAnalysis/core/topologyobjects.py'
2024-01-06T01:22:45,681   adding 'MDAnalysis/core/universe.py'
2024-01-06T01:22:45,684   adding 'MDAnalysis/lib/NeighborSearch.py'
2024-01-06T01:22:45,685   adding 'MDAnalysis/lib/__init__.py'
2024-01-06T01:22:45,780   adding 'MDAnalysis/lib/_augment.cpp'
2024-01-06T01:22:46,076   adding 'MDAnalysis/lib/_augment.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:46,087   adding 'MDAnalysis/lib/_augment.pyx'
2024-01-06T01:22:46,190   adding 'MDAnalysis/lib/_cutil.cpp'
2024-01-06T01:22:46,572   adding 'MDAnalysis/lib/_cutil.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:46,586   adding 'MDAnalysis/lib/_cutil.pxd'
2024-01-06T01:22:46,588   adding 'MDAnalysis/lib/_cutil.pyx'
2024-01-06T01:22:46,590   adding 'MDAnalysis/lib/_distopia.py'
2024-01-06T01:22:46,644   adding 'MDAnalysis/lib/_transformations.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:46,763   adding 'MDAnalysis/lib/c_distances.c'
2024-01-06T01:22:47,164   adding 'MDAnalysis/lib/c_distances.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:47,178   adding 'MDAnalysis/lib/c_distances.pxd'
2024-01-06T01:22:47,180   adding 'MDAnalysis/lib/c_distances.pyx'
2024-01-06T01:22:47,218   adding 'MDAnalysis/lib/c_distances_openmp.c'
2024-01-06T01:22:47,337   adding 'MDAnalysis/lib/c_distances_openmp.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:47,343   adding 'MDAnalysis/lib/c_distances_openmp.pyx'
2024-01-06T01:22:47,345   adding 'MDAnalysis/lib/correlations.py'
2024-01-06T01:22:47,351   adding 'MDAnalysis/lib/distances.py'
2024-01-06T01:22:47,354   adding 'MDAnalysis/lib/log.py'
2024-01-06T01:22:47,356   adding 'MDAnalysis/lib/mdamath.py'
2024-01-06T01:22:47,464   adding 'MDAnalysis/lib/nsgrid.cpp'
2024-01-06T01:22:47,844   adding 'MDAnalysis/lib/nsgrid.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:47,860   adding 'MDAnalysis/lib/nsgrid.pyx'
2024-01-06T01:22:47,862   adding 'MDAnalysis/lib/picklable_file_io.py'
2024-01-06T01:22:47,864   adding 'MDAnalysis/lib/pkdtree.py'
2024-01-06T01:22:47,981   adding 'MDAnalysis/lib/qcprot.c'
2024-01-06T01:22:48,340   adding 'MDAnalysis/lib/qcprot.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:48,354   adding 'MDAnalysis/lib/qcprot.pyx'
2024-01-06T01:22:48,361   adding 'MDAnalysis/lib/transformations.py'
2024-01-06T01:22:48,373   adding 'MDAnalysis/lib/util.py'
2024-01-06T01:22:48,376   adding 'MDAnalysis/lib/formats/__init__.py'
2024-01-06T01:22:48,464   adding 'MDAnalysis/lib/formats/cython_util.c'
2024-01-06T01:22:48,701   adding 'MDAnalysis/lib/formats/cython_util.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:48,710   adding 'MDAnalysis/lib/formats/cython_util.pxd'
2024-01-06T01:22:48,711   adding 'MDAnalysis/lib/formats/cython_util.pyx'
2024-01-06T01:22:48,835   adding 'MDAnalysis/lib/formats/libdcd.c'
2024-01-06T01:22:49,255   adding 'MDAnalysis/lib/formats/libdcd.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:49,269   adding 'MDAnalysis/lib/formats/libdcd.pxd'
2024-01-06T01:22:49,273   adding 'MDAnalysis/lib/formats/libdcd.pyx'
2024-01-06T01:22:49,397   adding 'MDAnalysis/lib/formats/libmdaxdr.c'
2024-01-06T01:22:49,859   adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-39-arm-linux-gnueabihf.so'
2024-01-06T01:22:49,874   adding 'MDAnalysis/lib/formats/libmdaxdr.pxd'
2024-01-06T01:22:49,878   adding 'MDAnalysis/lib/formats/libmdaxdr.pyx'
2024-01-06T01:22:49,880   adding 'MDAnalysis/lib/formats/include/endianswap.h'
2024-01-06T01:22:49,882   adding 'MDAnalysis/lib/formats/include/fastio.h'
2024-01-06T01:22:49,885   adding 'MDAnalysis/lib/formats/include/readdcd.h'
2024-01-06T01:22:49,886   adding 'MDAnalysis/lib/formats/include/trr_seek.h'
2024-01-06T01:22:49,889   adding 'MDAnalysis/lib/formats/include/xdrfile.h'
2024-01-06T01:22:49,891   adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h'
2024-01-06T01:22:49,892   adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h'
2024-01-06T01:22:49,893   adding 'MDAnalysis/lib/formats/include/xtc_seek.h'
2024-01-06T01:22:49,895   adding 'MDAnalysis/lib/formats/src/trr_seek.c'
2024-01-06T01:22:49,902   adding 'MDAnalysis/lib/formats/src/xdrfile.c'
2024-01-06T01:22:49,904   adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c'
2024-01-06T01:22:49,906   adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c'
2024-01-06T01:22:49,907   adding 'MDAnalysis/lib/formats/src/xtc_seek.c'
2024-01-06T01:22:49,910   adding 'MDAnalysis/lib/include/calc_distances.h'
2024-01-06T01:22:49,912   adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd'
2024-01-06T01:22:49,914   adding 'MDAnalysis/lib/src/transformations/AUTHOR'
2024-01-06T01:22:49,915   adding 'MDAnalysis/lib/src/transformations/LICENCE'
2024-01-06T01:22:49,925   adding 'MDAnalysis/lib/src/transformations/transformations.c'
2024-01-06T01:22:49,928   adding 'MDAnalysis/selections/__init__.py'
2024-01-06T01:22:49,930   adding 'MDAnalysis/selections/base.py'
2024-01-06T01:22:49,931   adding 'MDAnalysis/selections/charmm.py'
2024-01-06T01:22:49,933   adding 'MDAnalysis/selections/gromacs.py'
2024-01-06T01:22:49,934   adding 'MDAnalysis/selections/jmol.py'
2024-01-06T01:22:49,935   adding 'MDAnalysis/selections/pymol.py'
2024-01-06T01:22:49,937   adding 'MDAnalysis/selections/vmd.py'
2024-01-06T01:22:49,938   adding 'MDAnalysis/tests/__init__.py'
2024-01-06T01:22:49,940   adding 'MDAnalysis/tests/datafiles.py'
2024-01-06T01:22:49,942   adding 'MDAnalysis/topology/CRDParser.py'
2024-01-06T01:22:49,944   adding 'MDAnalysis/topology/DLPolyParser.py'
2024-01-06T01:22:49,945   adding 'MDAnalysis/topology/DMSParser.py'
2024-01-06T01:22:49,947   adding 'MDAnalysis/topology/ExtendedPDBParser.py'
2024-01-06T01:22:49,948   adding 'MDAnalysis/topology/FHIAIMSParser.py'
2024-01-06T01:22:49,950   adding 'MDAnalysis/topology/GMSParser.py'
2024-01-06T01:22:49,951   adding 'MDAnalysis/topology/GROParser.py'
2024-01-06T01:22:49,953   adding 'MDAnalysis/topology/GSDParser.py'
2024-01-06T01:22:49,954   adding 'MDAnalysis/topology/HoomdXMLParser.py'
2024-01-06T01:22:49,957   adding 'MDAnalysis/topology/ITPParser.py'
2024-01-06T01:22:49,960   adding 'MDAnalysis/topology/LAMMPSParser.py'
2024-01-06T01:22:49,962   adding 'MDAnalysis/topology/MMTFParser.py'
2024-01-06T01:22:49,964   adding 'MDAnalysis/topology/MOL2Parser.py'
2024-01-06T01:22:49,965   adding 'MDAnalysis/topology/MinimalParser.py'
2024-01-06T01:22:49,968   adding 'MDAnalysis/topology/PDBParser.py'
2024-01-06T01:22:49,970   adding 'MDAnalysis/topology/PDBQTParser.py'
2024-01-06T01:22:49,971   adding 'MDAnalysis/topology/PQRParser.py'
2024-01-06T01:22:49,973   adding 'MDAnalysis/topology/PSFParser.py'
2024-01-06T01:22:49,975   adding 'MDAnalysis/topology/ParmEdParser.py'
2024-01-06T01:22:49,978   adding 'MDAnalysis/topology/TOPParser.py'
2024-01-06T01:22:49,980   adding 'MDAnalysis/topology/TPRParser.py'
2024-01-06T01:22:49,982   adding 'MDAnalysis/topology/TXYZParser.py'
2024-01-06T01:22:49,983   adding 'MDAnalysis/topology/XYZParser.py'
2024-01-06T01:22:49,985   adding 'MDAnalysis/topology/__init__.py'
2024-01-06T01:22:49,987   adding 'MDAnalysis/topology/base.py'
2024-01-06T01:22:49,988   adding 'MDAnalysis/topology/core.py'
2024-01-06T01:22:49,991   adding 'MDAnalysis/topology/guessers.py'
2024-01-06T01:22:49,993   adding 'MDAnalysis/topology/tables.py'
2024-01-06T01:22:49,995   adding 'MDAnalysis/topology/tpr/__init__.py'
2024-01-06T01:22:49,997   adding 'MDAnalysis/topology/tpr/obj.py'
2024-01-06T01:22:49,998   adding 'MDAnalysis/topology/tpr/setting.py'
2024-01-06T01:22:50,002   adding 'MDAnalysis/topology/tpr/utils.py'
2024-01-06T01:22:50,004   adding 'MDAnalysis/transformations/__init__.py'
2024-01-06T01:22:50,006   adding 'MDAnalysis/transformations/base.py'
2024-01-06T01:22:50,007   adding 'MDAnalysis/transformations/boxdimensions.py'
2024-01-06T01:22:50,009   adding 'MDAnalysis/transformations/fit.py'
2024-01-06T01:22:50,011   adding 'MDAnalysis/transformations/nojump.py'
2024-01-06T01:22:50,013   adding 'MDAnalysis/transformations/positionaveraging.py'
2024-01-06T01:22:50,014   adding 'MDAnalysis/transformations/rotate.py'
2024-01-06T01:22:50,016   adding 'MDAnalysis/transformations/translate.py'
2024-01-06T01:22:50,018   adding 'MDAnalysis/transformations/wrap.py'
2024-01-06T01:22:50,019   adding 'MDAnalysis/visualization/__init__.py'
2024-01-06T01:22:50,022   adding 'MDAnalysis/visualization/streamlines.py'
2024-01-06T01:22:50,025   adding 'MDAnalysis/visualization/streamlines_3D.py'
2024-01-06T01:22:50,028   adding 'MDAnalysis-2.7.0.dist-info/AUTHORS'
2024-01-06T01:22:50,032   adding 'MDAnalysis-2.7.0.dist-info/LICENSE'
2024-01-06T01:22:50,037   adding 'MDAnalysis-2.7.0.dist-info/METADATA'
2024-01-06T01:22:50,038   adding 'MDAnalysis-2.7.0.dist-info/WHEEL'
2024-01-06T01:22:50,039   adding 'MDAnalysis-2.7.0.dist-info/top_level.txt'
2024-01-06T01:22:50,043   adding 'MDAnalysis-2.7.0.dist-info/RECORD'
2024-01-06T01:22:50,145   removing build/bdist.linux-armv7l/wheel
2024-01-06T01:22:50,409   Building wheel for mdanalysis (pyproject.toml): finished with status 'done'
2024-01-06T01:22:50,614   Created wheel for mdanalysis: filename=MDAnalysis-2.7.0-cp39-cp39-linux_armv7l.whl size=9763240 sha256=96d4510be344d8fa653703fb5edb4997905f012155f4f04541f7eb411f16e86a
2024-01-06T01:22:50,615   Stored in directory: /tmp/pip-ephem-wheel-cache-ynsb2ndr/wheels/26/60/8f/a9e77668e7c864a5f1c12d5f5e0d3033d86e341d16cae41df1
2024-01-06T01:22:50,643 Successfully built mdanalysis
2024-01-06T01:22:50,869 Removed build tracker: '/tmp/pip-build-tracker-ncdez5m5'