2024-01-06T01:32:41,473 Created temporary directory: /tmp/pip-build-tracker-trs0rq0o
2024-01-06T01:32:41,474 Initialized build tracking at /tmp/pip-build-tracker-trs0rq0o
2024-01-06T01:32:41,475 Created build tracker: /tmp/pip-build-tracker-trs0rq0o
2024-01-06T01:32:41,475 Entered build tracker: /tmp/pip-build-tracker-trs0rq0o
2024-01-06T01:32:41,476 Created temporary directory: /tmp/pip-wheel-fbrafah9
2024-01-06T01:32:41,479 Created temporary directory: /tmp/pip-ephem-wheel-cache-3lp7824x
2024-01-06T01:32:41,501 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T01:32:41,504 2 location(s) to search for versions of pygenetic-code:
2024-01-06T01:32:41,504 * https://pypi.org/simple/pygenetic-code/
2024-01-06T01:32:41,504 * https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T01:32:41,505 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/
2024-01-06T01:32:41,506 Getting page https://pypi.org/simple/pygenetic-code/
2024-01-06T01:32:41,507 Found index url https://pypi.org/simple/
2024-01-06T01:32:41,769 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json
2024-01-06T01:32:41,772   Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1
2024-01-06T01:32:41,773   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T01:32:41,774   Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12
2024-01-06T01:32:41,774   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T01:32:41,775   Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13
2024-01-06T01:32:41,776   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T01:32:41,776   Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14
2024-01-06T01:32:41,777   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T01:32:41,778   Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0
2024-01-06T01:32:41,778   Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/)
2024-01-06T01:32:41,779   Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0
2024-01-06T01:32:41,780 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T01:32:41,781 Getting page https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T01:32:41,782 Found index url https://www.piwheels.org/simple/
2024-01-06T01:32:41,951 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html
2024-01-06T01:32:41,953   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T01:32:41,954   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T01:32:41,954   Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/)
2024-01-06T01:32:41,954 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/
2024-01-06T01:32:41,955 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/
2024-01-06T01:32:41,975 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates
2024-01-06T01:32:41,994 Collecting pygenetic-code==0.16.0
2024-01-06T01:32:41,997   Created temporary directory: /tmp/pip-unpack-kgfqelc5
2024-01-06T01:32:42,250   Downloading pygenetic_code-0.16.0.tar.gz (1.5 MB)
2024-01-06T01:32:42,642   Added pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz to build tracker '/tmp/pip-build-tracker-trs0rq0o'
2024-01-06T01:32:42,647   Created temporary directory: /tmp/pip-build-env-b7zo3fui
2024-01-06T01:32:42,651   Installing build dependencies: started
2024-01-06T01:32:42,652   Running command pip subprocess to install build dependencies
2024-01-06T01:32:43,834   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2024-01-06T01:32:44,585   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T01:32:45,021   Collecting scikit-build-core
2024-01-06T01:32:45,033     Downloading https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB)
2024-01-06T01:32:45,060        ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 136.6/136.6 kB 7.6 MB/s eta 0:00:00
2024-01-06T01:32:45,558   Collecting packaging>=20.9 (from scikit-build-core)
2024-01-06T01:32:45,580     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T01:32:48,071   Installing collected packages: packaging, scikit-build-core
2024-01-06T01:32:48,639   Successfully installed packaging-23.2 scikit-build-core-0.7.1

2024-01-06T01:32:48,903   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-06T01:32:48,904   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-06T01:32:49,137   Installing build dependencies: finished with status 'done'
2024-01-06T01:32:49,140   Getting requirements to build wheel: started
2024-01-06T01:32:49,142   Running command Getting requirements to build wheel
2024-01-06T01:32:49,563   Getting requirements to build wheel: finished with status 'done'
2024-01-06T01:32:49,577   Installing backend dependencies: started
2024-01-06T01:32:49,579   Running command pip subprocess to install backend dependencies
2024-01-06T01:32:50,724   Using pip 23.3.1 from /home/piwheels/.local/lib/python3.11/site-packages/pip (python 3.11)
2024-01-06T01:32:51,264   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T01:32:51,694   Collecting pyproject_metadata
2024-01-06T01:32:51,711     Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB)
2024-01-06T01:32:51,813   Collecting pathspec
2024-01-06T01:32:51,829     Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB)
2024-01-06T01:32:52,009   Collecting packaging>=19.0 (from pyproject_metadata)
2024-01-06T01:32:52,022     Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB)
2024-01-06T01:32:54,403   Installing collected packages: pathspec, packaging, pyproject_metadata
2024-01-06T01:32:54,677   Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1

2024-01-06T01:32:54,934   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-06T01:32:54,935   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-06T01:32:55,166   Installing backend dependencies: finished with status 'done'
2024-01-06T01:32:55,168   Created temporary directory: /tmp/pip-modern-metadata-w6kkzna3
2024-01-06T01:32:55,170   Preparing metadata (pyproject.toml): started
2024-01-06T01:32:55,171   Running command Preparing metadata (pyproject.toml)
2024-01-06T01:32:55,676   *** scikit-build-core 0.7.1 using CMake 3.25.1 (metadata_wheel)
2024-01-06T01:32:55,762   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-06T01:32:55,767   Source in /tmp/pip-wheel-fbrafah9/pygenetic-code_844ae934912f4093a4d091c05da69498 has version 0.16.0, which satisfies requirement pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz
2024-01-06T01:32:55,768   Removed pygenetic-code==0.16.0 from https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz from build tracker '/tmp/pip-build-tracker-trs0rq0o'
2024-01-06T01:32:55,772 Created temporary directory: /tmp/pip-unpack-enn2ol0p
2024-01-06T01:32:55,773 Created temporary directory: /tmp/pip-unpack-ybdjuf2j
2024-01-06T01:32:55,776 Building wheels for collected packages: pygenetic-code
2024-01-06T01:32:55,780   Created temporary directory: /tmp/pip-wheel-_ocvrvel
2024-01-06T01:32:55,781   Destination directory: /tmp/pip-wheel-_ocvrvel
2024-01-06T01:32:55,783   Building wheel for pygenetic-code (pyproject.toml): started
2024-01-06T01:32:55,784   Running command Building wheel for pygenetic-code (pyproject.toml)
2024-01-06T01:32:56,267   *** scikit-build-core 0.7.1 using CMake 3.25.1 (wheel)
2024-01-06T01:32:56,289   *** Configuring CMake...
2024-01-06T01:32:56,384   loading initial cache file /tmp/tmp205sx5u0/build/CMakeInit.txt
2024-01-06T01:32:56,656   -- The C compiler identification is GNU 12.2.0
2024-01-06T01:32:56,715   -- Detecting C compiler ABI info
2024-01-06T01:32:56,972   -- Detecting C compiler ABI info - done
2024-01-06T01:32:57,010   -- Check for working C compiler: /usr/bin/cc - skipped
2024-01-06T01:32:57,011   -- Detecting C compile features
2024-01-06T01:32:57,014   -- Detecting C compile features - done
2024-01-06T01:32:57,703   -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module
2024-01-06T01:32:57,757   -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13")
2024-01-06T01:32:57,766   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
2024-01-06T01:32:58,081   -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
2024-01-06T01:32:58,085   -- Found Threads: TRUE
2024-01-06T01:32:58,092   -- Configuring done
2024-01-06T01:32:58,116   -- Generating done
2024-01-06T01:32:58,131   -- Build files have been written to: /tmp/tmp205sx5u0/build
2024-01-06T01:32:58,142   *** Building project with Ninja...
2024-01-06T01:32:58,480   [1/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o
2024-01-06T01:32:58,848   [2/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o
2024-01-06T01:32:59,014   [3/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o
2024-01-06T01:32:59,063   [4/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o
2024-01-06T01:32:59,189   [5/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o
2024-01-06T01:32:59,205   [6/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o
2024-01-06T01:32:59,205   /tmp/pip-wheel-fbrafah9/pygenetic-code_844ae934912f4093a4d091c05da69498/src/pygenetic_code.c: In function ‘translate_one_frame’:
2024-01-06T01:32:59,206   /tmp/pip-wheel-fbrafah9/pygenetic-code_844ae934912f4093a4d091c05da69498/src/pygenetic_code.c:37:5: warning: implicit declaration of function ‘encode_sequence’ [-Wimplicit-function-declaration]
2024-01-06T01:32:59,207      37 |     encode_sequence(seq, enc);
2024-01-06T01:32:59,208         |     ^~~~~~~~~~~~~~~
2024-01-06T01:32:59,335   [7/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o
2024-01-06T01:32:59,365   [8/11] Linking C shared module PyGeneticCode.cpython-311-arm-linux-gnueabihf.so
2024-01-06T01:32:59,517   [9/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o
2024-01-06T01:32:59,655   [10/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o
2024-01-06T01:32:59,763   [11/11] Linking C executable get_orfs
2024-01-06T01:32:59,768   *** Installing project into wheel...
2024-01-06T01:32:59,805   -- Install configuration: "Release"
2024-01-06T01:32:59,807   -- Installing: /tmp/tmp205sx5u0/wheel/platlib/./PyGeneticCode.cpython-311-arm-linux-gnueabihf.so
2024-01-06T01:32:59,828   *** Making wheel...
2024-01-06T01:32:59,931   *** Created pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl...
2024-01-06T01:32:59,988   Building wheel for pygenetic-code (pyproject.toml): finished with status 'done'
2024-01-06T01:32:59,992   Created wheel for pygenetic-code: filename=pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl size=23410 sha256=114e09c52cf6b8c9d2c626fb11da3059baccb7ab6c020acf465f24da8562a9a2
2024-01-06T01:32:59,994   Stored in directory: /tmp/pip-ephem-wheel-cache-3lp7824x/wheels/a4/ad/93/1e44de25a882b4149f43cab7e2011c81b111140a6d98a0e8ee
2024-01-06T01:33:00,004 Successfully built pygenetic-code
2024-01-06T01:33:00,009 Removed build tracker: '/tmp/pip-build-tracker-trs0rq0o'