2024-01-06T04:10:02,331 Created temporary directory: /tmp/pip-build-tracker-78i1hif4 2024-01-06T04:10:02,333 Initialized build tracking at /tmp/pip-build-tracker-78i1hif4 2024-01-06T04:10:02,333 Created build tracker: /tmp/pip-build-tracker-78i1hif4 2024-01-06T04:10:02,333 Entered build tracker: /tmp/pip-build-tracker-78i1hif4 2024-01-06T04:10:02,334 Created temporary directory: /tmp/pip-wheel-8s3y5rfu 2024-01-06T04:10:02,338 Created temporary directory: /tmp/pip-ephem-wheel-cache-k1b1gp6_ 2024-01-06T04:10:02,360 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:10:02,363 2 location(s) to search for versions of pygenetic-code: 2024-01-06T04:10:02,363 * https://pypi.org/simple/pygenetic-code/ 2024-01-06T04:10:02,363 * https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T04:10:02,364 Fetching project page and analyzing links: https://pypi.org/simple/pygenetic-code/ 2024-01-06T04:10:02,365 Getting page https://pypi.org/simple/pygenetic-code/ 2024-01-06T04:10:02,366 Found index url https://pypi.org/simple/ 2024-01-06T04:10:02,629 Fetched page https://pypi.org/simple/pygenetic-code/ as application/vnd.pypi.simple.v1+json 2024-01-06T04:10:02,632 Found link https://files.pythonhosted.org/packages/84/a1/cc8e872bc8e528b41332f1fab947d9602df53d40791107f6e90617080184/pygenetic_code-0.1.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.1 2024-01-06T04:10:02,633 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/60/74/3de8b3f7823254cc6a7ca4fa3328b71a80eb0a3ab116418577a3f7034b85/pygenetic_code-0.12-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T04:10:02,633 Found link https://files.pythonhosted.org/packages/d1/ba/422310256df438c65366a0fb9ac06223f2de825c492593ef1a0515bb155f/pygenetic_code-0.12.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.12 2024-01-06T04:10:02,634 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/de/3956838a090b1192897fa5a96db2644fb86f0ce706ef6711e5c36d334ffd/pygenetic_code-0.13-py3-none-any.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T04:10:02,634 Found link https://files.pythonhosted.org/packages/4b/65/6a45b507d5c90fbf58361fe51c89682a41a599517ebb82a1ef973af2bfe5/pygenetic_code-0.13.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.13 2024-01-06T04:10:02,635 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/45/32/7da0871bf6bacb18bad69098225a36fe722abf9ce25a5425e2613464f684/pygenetic_code-0.14-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T04:10:02,636 Found link https://files.pythonhosted.org/packages/b8/59/12e920bb85a3e63484bee6a9f19540c123d13141d90278d9df3fee2657b0/pygenetic_code-0.14.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.14 2024-01-06T04:10:02,637 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/96/56/8807d2e99754f6fb3b42e7f222645de44b3236175932883b81034e5187bc/pygenetic_code-0.16.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T04:10:02,637 Found link https://files.pythonhosted.org/packages/02/35/313be3eee9901c3f33c6a181ea66780b7d8a3c9e45c94335765f20e7d708/pygenetic_code-0.16.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.16.0 2024-01-06T04:10:02,638 Skipping link: No binaries permitted for pygenetic-code: https://files.pythonhosted.org/packages/3f/2f/785e03d0bdd6b68b73979678af82750864ef1985ebaedff32718b0b63afa/pygenetic_code-0.20.0-cp312-cp312-manylinux_2_35_x86_64.whl (from https://pypi.org/simple/pygenetic-code/) 2024-01-06T04:10:02,639 Found link https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz (from https://pypi.org/simple/pygenetic-code/), version: 0.20.0 2024-01-06T04:10:02,640 Fetching project page and analyzing links: https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T04:10:02,640 Getting page https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T04:10:02,642 Found index url https://www.piwheels.org/simple/ 2024-01-06T04:10:02,803 Fetched page https://www.piwheels.org/simple/pygenetic-code/ as text/html 2024-01-06T04:10:02,805 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.16.0-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=114e09c52cf6b8c9d2c626fb11da3059baccb7ab6c020acf465f24da8562a9a2 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T04:10:02,806 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.14-cp311-cp311-manylinux_2_36_armv7l.whl#sha256=1f9897d4aefaaa4785353a29a7be70df14485c4862db8b4cad9b72b2fe4375c6 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T04:10:02,806 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.13-py3-none-any.whl#sha256=c2dfb0365c143e7bc54e9d740400a9d734d69f6ba1529dca9d46ea49f2d6dc13 (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T04:10:02,807 Skipping link: No binaries permitted for pygenetic-code: https://www.piwheels.org/simple/pygenetic-code/pygenetic_code-0.12-py3-none-any.whl#sha256=30e9f0137d9393a7e979afe9d8619a4e16ba32093e1d658e5bf07dfcd95efa5f (from https://www.piwheels.org/simple/pygenetic-code/) 2024-01-06T04:10:02,807 Skipping link: not a file: https://www.piwheels.org/simple/pygenetic-code/ 2024-01-06T04:10:02,808 Skipping link: not a file: https://pypi.org/simple/pygenetic-code/ 2024-01-06T04:10:02,827 Given no hashes to check 1 links for project 'pygenetic-code': discarding no candidates 2024-01-06T04:10:02,844 Collecting pygenetic-code==0.20.0 2024-01-06T04:10:02,847 Created temporary directory: /tmp/pip-unpack-p7k7cbiy 2024-01-06T04:10:03,068 Downloading pygenetic_code-0.20.0.tar.gz (1.5 MB) 2024-01-06T04:10:03,593 Added pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz to build tracker '/tmp/pip-build-tracker-78i1hif4' 2024-01-06T04:10:03,599 Created temporary directory: /tmp/pip-build-env-_tikyf4v 2024-01-06T04:10:03,605 Installing build dependencies: started 2024-01-06T04:10:03,607 Running command pip subprocess to install build dependencies 2024-01-06T04:10:04,752 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-06T04:10:05,269 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:10:05,784 Collecting scikit-build-core 2024-01-06T04:10:05,807 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.7.1-py3-none-any.whl (136 kB) 2024-01-06T04:10:06,156 Collecting packaging>=20.9 (from scikit-build-core) 2024-01-06T04:10:06,171 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-06T04:10:08,543 Installing collected packages: packaging, scikit-build-core 2024-01-06T04:10:09,127 Successfully installed packaging-23.2 scikit-build-core-0.7.1 2024-01-06T04:10:09,398 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T04:10:09,399 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T04:10:09,631 Installing build dependencies: finished with status 'done' 2024-01-06T04:10:09,635 Getting requirements to build wheel: started 2024-01-06T04:10:09,636 Running command Getting requirements to build wheel 2024-01-06T04:10:10,056 Getting requirements to build wheel: finished with status 'done' 2024-01-06T04:10:10,071 Installing backend dependencies: started 2024-01-06T04:10:10,072 Running command pip subprocess to install backend dependencies 2024-01-06T04:10:11,253 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-06T04:10:11,766 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:10:12,149 Collecting pathspec 2024-01-06T04:10:12,164 Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB) 2024-01-06T04:10:12,240 Collecting pyproject_metadata 2024-01-06T04:10:12,257 Using cached https://www.piwheels.org/simple/pyproject-metadata/pyproject_metadata-0.7.1-py3-none-any.whl (7.4 kB) 2024-01-06T04:10:12,437 Collecting packaging>=19.0 (from pyproject_metadata) 2024-01-06T04:10:12,451 Using cached https://www.piwheels.org/simple/packaging/packaging-23.2-py3-none-any.whl (53 kB) 2024-01-06T04:10:14,707 Installing collected packages: pathspec, packaging, pyproject_metadata 2024-01-06T04:10:14,981 Successfully installed packaging-23.2 pathspec-0.12.1 pyproject_metadata-0.7.1 2024-01-06T04:10:15,250 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T04:10:15,251 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T04:10:15,482 Installing backend dependencies: finished with status 'done' 2024-01-06T04:10:15,483 Created temporary directory: /tmp/pip-modern-metadata-cngwyp7u 2024-01-06T04:10:15,486 Preparing metadata (pyproject.toml): started 2024-01-06T04:10:15,487 Running command Preparing metadata (pyproject.toml) 2024-01-06T04:10:16,017 *** scikit-build-core 0.7.1 using CMake 3.25.1 (metadata_wheel) 2024-01-06T04:10:16,105 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-06T04:10:16,110 Source in /tmp/pip-wheel-8s3y5rfu/pygenetic-code_78311f33072d47b29e3c16082837eb4b has version 0.20.0, which satisfies requirement pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz 2024-01-06T04:10:16,111 Removed pygenetic-code==0.20.0 from https://files.pythonhosted.org/packages/b6/6f/034dc48dd7768cb5aecabb4c2b68e5ff48d7fea6ee3fc51fed7a068e7c11/pygenetic_code-0.20.0.tar.gz from build tracker '/tmp/pip-build-tracker-78i1hif4' 2024-01-06T04:10:16,115 Created temporary directory: /tmp/pip-unpack-t9ypmh1y 2024-01-06T04:10:16,116 Created temporary directory: /tmp/pip-unpack-tc8wgjaa 2024-01-06T04:10:16,119 Building wheels for collected packages: pygenetic-code 2024-01-06T04:10:16,124 Created temporary directory: /tmp/pip-wheel-g9ee2qp9 2024-01-06T04:10:16,124 Destination directory: /tmp/pip-wheel-g9ee2qp9 2024-01-06T04:10:16,127 Building wheel for pygenetic-code (pyproject.toml): started 2024-01-06T04:10:16,128 Running command Building wheel for pygenetic-code (pyproject.toml) 2024-01-06T04:10:18,621 *** scikit-build-core 0.7.1 using CMake 3.25.1 (wheel) 2024-01-06T04:10:18,643 *** Configuring CMake... 2024-01-06T04:10:18,740 loading initial cache file /tmp/tmp56bld3s_/build/CMakeInit.txt 2024-01-06T04:10:19,010 -- The C compiler identification is GNU 12.2.0 2024-01-06T04:10:19,065 -- Detecting C compiler ABI info 2024-01-06T04:10:19,324 -- Detecting C compiler ABI info - done 2024-01-06T04:10:19,362 -- Check for working C compiler: /usr/bin/cc - skipped 2024-01-06T04:10:19,364 -- Detecting C compile features 2024-01-06T04:10:19,366 -- Detecting C compile features - done 2024-01-06T04:10:20,052 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module 2024-01-06T04:10:20,107 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2024-01-06T04:10:20,113 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2024-01-06T04:10:20,401 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2024-01-06T04:10:20,405 -- Found Threads: TRUE 2024-01-06T04:10:20,411 -- Configuring done 2024-01-06T04:10:20,437 -- Generating done 2024-01-06T04:10:20,452 -- Build files have been written to: /tmp/tmp56bld3s_/build 2024-01-06T04:10:20,462 *** Building project with Ninja... 2024-01-06T04:10:20,864 [1/11] Building C object CMakeFiles/PyGeneticCode.dir/src/error.c.o 2024-01-06T04:10:21,111 [2/11] Building C object CMakeFiles/PyGeneticCode.dir/src/seqs_to_ints.c.o 2024-01-06T04:10:21,215 [3/11] Building C object CMakeFiles/get_orfs.dir/src/error.c.o 2024-01-06T04:10:21,470 [4/11] Building C object CMakeFiles/PyGeneticCode.dir/src/translate.c.o 2024-01-06T04:10:21,588 [5/11] Building C object CMakeFiles/PyGeneticCode.dir/src/pygenetic_code.c.o 2024-01-06T04:10:21,589 /tmp/pip-wheel-8s3y5rfu/pygenetic-code_78311f33072d47b29e3c16082837eb4b/src/pygenetic_code.c: In function ‘translate’: 2024-01-06T04:10:21,590 /tmp/pip-wheel-8s3y5rfu/pygenetic-code_78311f33072d47b29e3c16082837eb4b/src/pygenetic_code.c:37:5: warning: implicit declaration of function ‘parallel_encode_sequence’ [-Wimplicit-function-declaration] 2024-01-06T04:10:21,590 37 | parallel_encode_sequence(seq, enc, 8); 2024-01-06T04:10:21,591 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2024-01-06T04:10:21,622 [6/11] Building C object CMakeFiles/PyGeneticCode.dir/src/get_orfs.c.o 2024-01-06T04:10:21,645 [7/11] Building C object CMakeFiles/get_orfs.dir/src/get_orfs.c.o 2024-01-06T04:10:21,772 [8/11] Linking C shared module PyGeneticCode.cpython-311-arm-linux-gnueabihf.so 2024-01-06T04:10:21,857 [9/11] Building C object CMakeFiles/get_orfs.dir/src/seqs_to_ints.c.o 2024-01-06T04:10:21,939 [10/11] Building C object CMakeFiles/get_orfs.dir/src/translate.c.o 2024-01-06T04:10:22,047 [11/11] Linking C executable get_orfs 2024-01-06T04:10:22,052 *** Installing project into wheel... 2024-01-06T04:10:22,089 -- Install configuration: "Release" 2024-01-06T04:10:22,090 -- Installing: /tmp/tmp56bld3s_/wheel/platlib/./PyGeneticCode.cpython-311-arm-linux-gnueabihf.so 2024-01-06T04:10:22,110 *** Making wheel... 2024-01-06T04:10:22,213 *** Created pygenetic_code-0.20.0-cp311-cp311-manylinux_2_36_armv7l.whl... 2024-01-06T04:10:22,270 Building wheel for pygenetic-code (pyproject.toml): finished with status 'done' 2024-01-06T04:10:22,274 Created wheel for pygenetic-code: filename=pygenetic_code-0.20.0-cp311-cp311-manylinux_2_36_armv7l.whl size=24300 sha256=9de71a4b6dd7840b28a0539ef3d97c734ef21843dca2fc9f0679b6ca0f241cd3 2024-01-06T04:10:22,276 Stored in directory: /tmp/pip-ephem-wheel-cache-k1b1gp6_/wheels/86/be/eb/00ab22833dbf20ab759abf854c00011adfe92831d3f47199ff 2024-01-06T04:10:22,286 Successfully built pygenetic-code 2024-01-06T04:10:22,290 Removed build tracker: '/tmp/pip-build-tracker-78i1hif4'