2024-01-06T04:18:30,652 Created temporary directory: /tmp/pip-build-tracker-tsh3xjjn 2024-01-06T04:18:30,653 Initialized build tracking at /tmp/pip-build-tracker-tsh3xjjn 2024-01-06T04:18:30,654 Created build tracker: /tmp/pip-build-tracker-tsh3xjjn 2024-01-06T04:18:30,654 Entered build tracker: /tmp/pip-build-tracker-tsh3xjjn 2024-01-06T04:18:30,655 Created temporary directory: /tmp/pip-wheel-5g28cyzm 2024-01-06T04:18:30,658 Created temporary directory: /tmp/pip-ephem-wheel-cache-6tx_xi1h 2024-01-06T04:18:30,680 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:18:30,683 2 location(s) to search for versions of mddtoolkit: 2024-01-06T04:18:30,683 * https://pypi.org/simple/mddtoolkit/ 2024-01-06T04:18:30,683 * https://www.piwheels.org/simple/mddtoolkit/ 2024-01-06T04:18:30,684 Fetching project page and analyzing links: https://pypi.org/simple/mddtoolkit/ 2024-01-06T04:18:30,685 Getting page https://pypi.org/simple/mddtoolkit/ 2024-01-06T04:18:30,687 Found index url https://pypi.org/simple/ 2024-01-06T04:18:30,936 Fetched page https://pypi.org/simple/mddtoolkit/ as application/vnd.pypi.simple.v1+json 2024-01-06T04:18:30,937 Skipping link: No binaries permitted for mddtoolkit: https://files.pythonhosted.org/packages/de/36/2d2deb556fef208190efd07de1d1d132d077ed1b4e4d98ce12c82e00f5a0/mddtoolkit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9) 2024-01-06T04:18:30,938 Found link https://files.pythonhosted.org/packages/d8/2f/86ce1747cfbe633e9a702c4791b55084f4297dc2088b4b7eaa661e3c4831/mddtoolkit-0.2.0.tar.gz (from https://pypi.org/simple/mddtoolkit/) (requires-python:>=3.9), version: 0.2.0 2024-01-06T04:18:30,939 Fetching project page and analyzing links: https://www.piwheels.org/simple/mddtoolkit/ 2024-01-06T04:18:30,940 Getting page https://www.piwheels.org/simple/mddtoolkit/ 2024-01-06T04:18:30,941 Found index url https://www.piwheels.org/simple/ 2024-01-06T04:18:31,108 Fetched page https://www.piwheels.org/simple/mddtoolkit/ as text/html 2024-01-06T04:18:31,110 Skipping link: not a file: https://www.piwheels.org/simple/mddtoolkit/ 2024-01-06T04:18:31,110 Skipping link: not a file: https://pypi.org/simple/mddtoolkit/ 2024-01-06T04:18:31,128 Given no hashes to check 1 links for project 'mddtoolkit': discarding no candidates 2024-01-06T04:18:31,146 Collecting mddtoolkit==0.2.0 2024-01-06T04:18:31,149 Created temporary directory: /tmp/pip-unpack-k3aj1i6q 2024-01-06T04:18:31,370 Downloading mddtoolkit-0.2.0.tar.gz (26 kB) 2024-01-06T04:18:31,445 Added mddtoolkit==0.2.0 from https://files.pythonhosted.org/packages/d8/2f/86ce1747cfbe633e9a702c4791b55084f4297dc2088b4b7eaa661e3c4831/mddtoolkit-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-tsh3xjjn' 2024-01-06T04:18:31,449 Created temporary directory: /tmp/pip-build-env-x2mbw0do 2024-01-06T04:18:31,453 Installing build dependencies: started 2024-01-06T04:18:31,454 Running command pip subprocess to install build dependencies 2024-01-06T04:18:32,624 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-06T04:18:33,154 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:18:34,602 Collecting setuptools 2024-01-06T04:18:34,617 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-06T04:18:37,200 Installing collected packages: setuptools 2024-01-06T04:18:39,473 Successfully installed setuptools-69.0.3 2024-01-06T04:18:39,752 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T04:18:39,752 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T04:18:40,016 Installing build dependencies: finished with status 'done' 2024-01-06T04:18:40,019 Getting requirements to build wheel: started 2024-01-06T04:18:40,020 Running command Getting requirements to build wheel 2024-01-06T04:18:40,777 running egg_info 2024-01-06T04:18:40,780 writing src/mddtoolkit.egg-info/PKG-INFO 2024-01-06T04:18:40,783 writing dependency_links to src/mddtoolkit.egg-info/dependency_links.txt 2024-01-06T04:18:40,785 writing entry points to src/mddtoolkit.egg-info/entry_points.txt 2024-01-06T04:18:40,787 writing requirements to src/mddtoolkit.egg-info/requires.txt 2024-01-06T04:18:40,788 writing top-level names to src/mddtoolkit.egg-info/top_level.txt 2024-01-06T04:18:40,806 reading manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:40,810 writing manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:40,922 Getting requirements to build wheel: finished with status 'done' 2024-01-06T04:18:40,931 Installing backend dependencies: started 2024-01-06T04:18:40,933 Running command pip subprocess to install backend dependencies 2024-01-06T04:18:42,118 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-06T04:18:42,643 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T04:18:43,125 Collecting wheel 2024-01-06T04:18:43,141 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-06T04:18:45,411 Installing collected packages: wheel 2024-01-06T04:18:45,641 Creating /tmp/pip-build-env-x2mbw0do/normal/local/bin 2024-01-06T04:18:45,644 changing mode of /tmp/pip-build-env-x2mbw0do/normal/local/bin/wheel to 755 2024-01-06T04:18:45,656 Successfully installed wheel-0.42.0 2024-01-06T04:18:45,936 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T04:18:45,937 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T04:18:46,172 Installing backend dependencies: finished with status 'done' 2024-01-06T04:18:46,174 Created temporary directory: /tmp/pip-modern-metadata-ny5b7myz 2024-01-06T04:18:46,176 Preparing metadata (pyproject.toml): started 2024-01-06T04:18:46,177 Running command Preparing metadata (pyproject.toml) 2024-01-06T04:18:46,982 running dist_info 2024-01-06T04:18:46,987 creating /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info 2024-01-06T04:18:46,991 writing /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/PKG-INFO 2024-01-06T04:18:46,994 writing dependency_links to /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/dependency_links.txt 2024-01-06T04:18:46,996 writing entry points to /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/entry_points.txt 2024-01-06T04:18:46,997 writing requirements to /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/requires.txt 2024-01-06T04:18:46,998 writing top-level names to /tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/top_level.txt 2024-01-06T04:18:46,999 writing manifest file '/tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:47,019 reading manifest file '/tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:47,023 writing manifest file '/tmp/pip-modern-metadata-ny5b7myz/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:47,024 creating '/tmp/pip-modern-metadata-ny5b7myz/mddtoolkit-0.2.0.dist-info' 2024-01-06T04:18:47,173 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-06T04:18:47,179 Source in /tmp/pip-wheel-5g28cyzm/mddtoolkit_f2161967390a4cdd9ddae6a7a8fedf89 has version 0.2.0, which satisfies requirement mddtoolkit==0.2.0 from https://files.pythonhosted.org/packages/d8/2f/86ce1747cfbe633e9a702c4791b55084f4297dc2088b4b7eaa661e3c4831/mddtoolkit-0.2.0.tar.gz 2024-01-06T04:18:47,180 Removed mddtoolkit==0.2.0 from https://files.pythonhosted.org/packages/d8/2f/86ce1747cfbe633e9a702c4791b55084f4297dc2088b4b7eaa661e3c4831/mddtoolkit-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-tsh3xjjn' 2024-01-06T04:18:47,186 Created temporary directory: /tmp/pip-unpack-1o5wdkh8 2024-01-06T04:18:47,187 Created temporary directory: /tmp/pip-unpack-f507wds7 2024-01-06T04:18:47,197 Building wheels for collected packages: mddtoolkit 2024-01-06T04:18:47,201 Created temporary directory: /tmp/pip-wheel-6tr1kn0u 2024-01-06T04:18:47,201 Destination directory: /tmp/pip-wheel-6tr1kn0u 2024-01-06T04:18:47,204 Building wheel for mddtoolkit (pyproject.toml): started 2024-01-06T04:18:47,205 Running command Building wheel for mddtoolkit (pyproject.toml) 2024-01-06T04:18:47,942 running bdist_wheel 2024-01-06T04:18:47,958 running build 2024-01-06T04:18:47,958 running build_py 2024-01-06T04:18:47,963 creating build 2024-01-06T04:18:47,963 creating build/lib 2024-01-06T04:18:47,964 creating build/lib/diffusion_kinetics 2024-01-06T04:18:47,965 copying src/diffusion_kinetics/cli.py -> build/lib/diffusion_kinetics 2024-01-06T04:18:47,967 copying src/diffusion_kinetics/__init__.py -> build/lib/diffusion_kinetics 2024-01-06T04:18:47,969 creating build/lib/diffusion_kinetics/preprocessing 2024-01-06T04:18:47,970 copying src/diffusion_kinetics/preprocessing/generate_inputs.py -> build/lib/diffusion_kinetics/preprocessing 2024-01-06T04:18:47,971 copying src/diffusion_kinetics/preprocessing/calculate_experimental_results.py -> build/lib/diffusion_kinetics/preprocessing 2024-01-06T04:18:47,974 creating build/lib/diffusion_kinetics/utils 2024-01-06T04:18:47,975 copying src/diffusion_kinetics/utils/plot_results.py -> build/lib/diffusion_kinetics/utils 2024-01-06T04:18:47,977 copying src/diffusion_kinetics/utils/kinetics_dataframe.py -> build/lib/diffusion_kinetics/utils 2024-01-06T04:18:47,979 copying src/diffusion_kinetics/utils/organize_x.py -> build/lib/diffusion_kinetics/utils 2024-01-06T04:18:47,981 creating build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,982 copying src/diffusion_kinetics/optimization/dataset.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,983 copying src/diffusion_kinetics/optimization/forward_model_kinetics.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,985 copying src/diffusion_kinetics/optimization/__init__.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,987 copying src/diffusion_kinetics/optimization/diffusion_optimizer.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,989 copying src/diffusion_kinetics/optimization/conHe_Param.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,991 copying src/diffusion_kinetics/optimization/diffusion_objective.py -> build/lib/diffusion_kinetics/optimization 2024-01-06T04:18:47,993 creating build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:47,994 copying src/diffusion_kinetics/pipeline/base_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:47,996 copying src/diffusion_kinetics/pipeline/single_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:47,998 copying src/diffusion_kinetics/pipeline/__init__.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:48,000 copying src/diffusion_kinetics/pipeline/pipeline_config.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:48,002 copying src/diffusion_kinetics/pipeline/multi_pipeline.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:48,004 copying src/diffusion_kinetics/pipeline/pipeline_output.py -> build/lib/diffusion_kinetics/pipeline 2024-01-06T04:18:48,006 running egg_info 2024-01-06T04:18:48,009 writing src/mddtoolkit.egg-info/PKG-INFO 2024-01-06T04:18:48,012 writing dependency_links to src/mddtoolkit.egg-info/dependency_links.txt 2024-01-06T04:18:48,013 writing entry points to src/mddtoolkit.egg-info/entry_points.txt 2024-01-06T04:18:48,015 writing requirements to src/mddtoolkit.egg-info/requires.txt 2024-01-06T04:18:48,016 writing top-level names to src/mddtoolkit.egg-info/top_level.txt 2024-01-06T04:18:48,026 reading manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:48,031 writing manifest file 'src/mddtoolkit.egg-info/SOURCES.txt' 2024-01-06T04:18:48,043 installing to build/bdist.linux-armv7l/wheel 2024-01-06T04:18:48,043 running install 2024-01-06T04:18:48,067 running install_lib 2024-01-06T04:18:48,071 creating build/bdist.linux-armv7l 2024-01-06T04:18:48,071 creating build/bdist.linux-armv7l/wheel 2024-01-06T04:18:48,073 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics 2024-01-06T04:18:48,075 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-01-06T04:18:48,076 copying build/lib/diffusion_kinetics/preprocessing/generate_inputs.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-01-06T04:18:48,077 copying build/lib/diffusion_kinetics/preprocessing/calculate_experimental_results.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/preprocessing 2024-01-06T04:18:48,080 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-01-06T04:18:48,081 copying build/lib/diffusion_kinetics/utils/plot_results.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-01-06T04:18:48,083 copying build/lib/diffusion_kinetics/utils/kinetics_dataframe.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-01-06T04:18:48,085 copying build/lib/diffusion_kinetics/utils/organize_x.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/utils 2024-01-06T04:18:48,087 copying build/lib/diffusion_kinetics/cli.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics 2024-01-06T04:18:48,089 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,089 copying build/lib/diffusion_kinetics/optimization/dataset.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,091 copying build/lib/diffusion_kinetics/optimization/forward_model_kinetics.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,093 copying build/lib/diffusion_kinetics/optimization/__init__.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,095 copying build/lib/diffusion_kinetics/optimization/diffusion_optimizer.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,097 copying build/lib/diffusion_kinetics/optimization/conHe_Param.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,099 copying build/lib/diffusion_kinetics/optimization/diffusion_objective.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/optimization 2024-01-06T04:18:48,101 copying build/lib/diffusion_kinetics/__init__.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics 2024-01-06T04:18:48,103 creating build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,104 copying build/lib/diffusion_kinetics/pipeline/base_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,106 copying build/lib/diffusion_kinetics/pipeline/single_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,108 copying build/lib/diffusion_kinetics/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,109 copying build/lib/diffusion_kinetics/pipeline/pipeline_config.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,112 copying build/lib/diffusion_kinetics/pipeline/multi_pipeline.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,114 copying build/lib/diffusion_kinetics/pipeline/pipeline_output.py -> build/bdist.linux-armv7l/wheel/diffusion_kinetics/pipeline 2024-01-06T04:18:48,115 running install_egg_info 2024-01-06T04:18:48,119 Copying src/mddtoolkit.egg-info to build/bdist.linux-armv7l/wheel/mddtoolkit-0.2.0-py3.11.egg-info 2024-01-06T04:18:48,130 running install_scripts 2024-01-06T04:18:48,145 creating build/bdist.linux-armv7l/wheel/mddtoolkit-0.2.0.dist-info/WHEEL 2024-01-06T04:18:48,151 creating '/tmp/pip-wheel-6tr1kn0u/.tmp-80m3zsi4/mddtoolkit-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-06T04:18:48,158 adding 'diffusion_kinetics/__init__.py' 2024-01-06T04:18:48,161 adding 'diffusion_kinetics/cli.py' 2024-01-06T04:18:48,168 adding 'diffusion_kinetics/optimization/__init__.py' 2024-01-06T04:18:48,171 adding 'diffusion_kinetics/optimization/conHe_Param.py' 2024-01-06T04:18:48,175 adding 'diffusion_kinetics/optimization/dataset.py' 2024-01-06T04:18:48,181 adding 'diffusion_kinetics/optimization/diffusion_objective.py' 2024-01-06T04:18:48,185 adding 'diffusion_kinetics/optimization/diffusion_optimizer.py' 2024-01-06T04:18:48,188 adding 'diffusion_kinetics/optimization/forward_model_kinetics.py' 2024-01-06T04:18:48,189 adding 'diffusion_kinetics/pipeline/__init__.py' 2024-01-06T04:18:48,190 adding 'diffusion_kinetics/pipeline/base_pipeline.py' 2024-01-06T04:18:48,192 adding 'diffusion_kinetics/pipeline/multi_pipeline.py' 2024-01-06T04:18:48,194 adding 'diffusion_kinetics/pipeline/pipeline_config.py' 2024-01-06T04:18:48,195 adding 'diffusion_kinetics/pipeline/pipeline_output.py' 2024-01-06T04:18:48,197 adding 'diffusion_kinetics/pipeline/single_pipeline.py' 2024-01-06T04:18:48,199 adding 'diffusion_kinetics/preprocessing/calculate_experimental_results.py' 2024-01-06T04:18:48,200 adding 'diffusion_kinetics/preprocessing/generate_inputs.py' 2024-01-06T04:18:48,202 adding 'diffusion_kinetics/utils/kinetics_dataframe.py' 2024-01-06T04:18:48,203 adding 'diffusion_kinetics/utils/organize_x.py' 2024-01-06T04:18:48,205 adding 'diffusion_kinetics/utils/plot_results.py' 2024-01-06T04:18:48,207 adding 'mddtoolkit-0.2.0.dist-info/METADATA' 2024-01-06T04:18:48,207 adding 'mddtoolkit-0.2.0.dist-info/WHEEL' 2024-01-06T04:18:48,208 adding 'mddtoolkit-0.2.0.dist-info/entry_points.txt' 2024-01-06T04:18:48,209 adding 'mddtoolkit-0.2.0.dist-info/top_level.txt' 2024-01-06T04:18:48,210 adding 'mddtoolkit-0.2.0.dist-info/RECORD' 2024-01-06T04:18:48,212 removing build/bdist.linux-armv7l/wheel 2024-01-06T04:18:48,338 Building wheel for mddtoolkit (pyproject.toml): finished with status 'done' 2024-01-06T04:18:48,343 Created wheel for mddtoolkit: filename=mddtoolkit-0.2.0-py3-none-any.whl size=28038 sha256=9c531691318200ce1c3fbaff2ca1cbe70683c2ced4c1a19b447377745fd3b18e 2024-01-06T04:18:48,344 Stored in directory: /tmp/pip-ephem-wheel-cache-6tx_xi1h/wheels/7f/61/87/43be0326d65b96a46d87ca68bed87489710c473382db673773 2024-01-06T04:18:48,355 Successfully built mddtoolkit 2024-01-06T04:18:48,359 Removed build tracker: '/tmp/pip-build-tracker-tsh3xjjn'