2024-01-06T06:53:36,806 Created temporary directory: /tmp/pip-build-tracker-2bt9uma2
2024-01-06T06:53:36,807 Initialized build tracking at /tmp/pip-build-tracker-2bt9uma2
2024-01-06T06:53:36,808 Created build tracker: /tmp/pip-build-tracker-2bt9uma2
2024-01-06T06:53:36,808 Entered build tracker: /tmp/pip-build-tracker-2bt9uma2
2024-01-06T06:53:36,809 Created temporary directory: /tmp/pip-wheel-_z313um_
2024-01-06T06:53:36,812 Created temporary directory: /tmp/pip-ephem-wheel-cache-x69dxssm
2024-01-06T06:53:36,834 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T06:53:36,837 2 location(s) to search for versions of galaxy-app:
2024-01-06T06:53:36,837 * https://pypi.org/simple/galaxy-app/
2024-01-06T06:53:36,837 * https://www.piwheels.org/simple/galaxy-app/
2024-01-06T06:53:36,838 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/
2024-01-06T06:53:36,838 Getting page https://pypi.org/simple/galaxy-app/
2024-01-06T06:53:36,840 Found index url https://pypi.org/simple/
2024-01-06T06:53:37,058 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json
2024-01-06T06:53:37,064   Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0
2024-01-06T06:53:37,065   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-01-06T06:53:37,066   Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0
2024-01-06T06:53:37,066   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-01-06T06:53:37,067   Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0
2024-01-06T06:53:37,068   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-01-06T06:53:37,068   Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1
2024-01-06T06:53:37,069   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/)
2024-01-06T06:53:37,070   Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1
2024-01-06T06:53:37,071   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,072   Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2
2024-01-06T06:53:37,072   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,073   Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3
2024-01-06T06:53:37,074   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,075   Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4
2024-01-06T06:53:37,075   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,076   Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5
2024-01-06T06:53:37,077   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,078   Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6
2024-01-06T06:53:37,078   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,079   Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1
2024-01-06T06:53:37,080   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,081   Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2
2024-01-06T06:53:37,081   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,082   Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3
2024-01-06T06:53:37,083   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,084   Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4
2024-01-06T06:53:37,084   Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,085 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/
2024-01-06T06:53:37,086 Getting page https://www.piwheels.org/simple/galaxy-app/
2024-01-06T06:53:37,087 Found index url https://www.piwheels.org/simple/
2024-01-06T06:53:37,254 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html
2024-01-06T06:53:37,258   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,258   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,259   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,259   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,260   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,260   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,261   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,261   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,262   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7)
2024-01-06T06:53:37,263   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/)
2024-01-06T06:53:37,263   Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/)
2024-01-06T06:53:37,264 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/
2024-01-06T06:53:37,264 Skipping link: not a file: https://pypi.org/simple/galaxy-app/
2024-01-06T06:53:37,284 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates
2024-01-06T06:53:37,302 Collecting galaxy-app==23.1.4
2024-01-06T06:53:37,304   Created temporary directory: /tmp/pip-unpack-gxcuak48
2024-01-06T06:53:37,525   Downloading galaxy-app-23.1.4.tar.gz (1.1 MB)
2024-01-06T06:53:38,913   Added galaxy-app==23.1.4 from https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-2bt9uma2'
2024-01-06T06:53:38,916   Created temporary directory: /tmp/pip-build-env-nav8_mrb
2024-01-06T06:53:38,920   Installing build dependencies: started
2024-01-06T06:53:38,921   Running command pip subprocess to install build dependencies
2024-01-06T06:53:40,050   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-06T06:53:40,571   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T06:53:41,985   Collecting setuptools
2024-01-06T06:53:41,999     Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB)
2024-01-06T06:53:44,564   Installing collected packages: setuptools
2024-01-06T06:53:46,856   Successfully installed setuptools-69.0.3

2024-01-06T06:53:47,131   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-06T06:53:47,131   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-06T06:53:47,393   Installing build dependencies: finished with status 'done'
2024-01-06T06:53:47,396   Getting requirements to build wheel: started
2024-01-06T06:53:47,398   Running command Getting requirements to build wheel
2024-01-06T06:53:48,026   running egg_info
2024-01-06T06:53:48,030   writing galaxy_app.egg-info/PKG-INFO
2024-01-06T06:53:48,035   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2024-01-06T06:53:48,037   writing entry points to galaxy_app.egg-info/entry_points.txt
2024-01-06T06:53:48,039   writing requirements to galaxy_app.egg-info/requires.txt
2024-01-06T06:53:48,040   writing top-level names to galaxy_app.egg-info/top_level.txt
2024-01-06T06:53:48,117   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:48,163   reading manifest template 'MANIFEST.in'
2024-01-06T06:53:48,659   adding license file 'LICENSE'
2024-01-06T06:53:48,686   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:48,764   Getting requirements to build wheel: finished with status 'done'
2024-01-06T06:53:48,772   Installing backend dependencies: started
2024-01-06T06:53:48,773   Running command pip subprocess to install backend dependencies
2024-01-06T06:53:49,943   Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11)
2024-01-06T06:53:50,456   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2024-01-06T06:53:50,923   Collecting wheel
2024-01-06T06:53:50,938     Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB)
2024-01-06T06:53:53,175   Installing collected packages: wheel
2024-01-06T06:53:53,408     Creating /tmp/pip-build-env-nav8_mrb/normal/local/bin
2024-01-06T06:53:53,410     changing mode of /tmp/pip-build-env-nav8_mrb/normal/local/bin/wheel to 755
2024-01-06T06:53:53,422   Successfully installed wheel-0.42.0

2024-01-06T06:53:53,692   [notice] A new release of pip is available: 23.3.1 -> 23.3.2
2024-01-06T06:53:53,692   [notice] To update, run: python3 -m pip install --upgrade pip
2024-01-06T06:53:53,921   Installing backend dependencies: finished with status 'done'
2024-01-06T06:53:53,923   Created temporary directory: /tmp/pip-modern-metadata-wi9g44bp
2024-01-06T06:53:53,925   Preparing metadata (pyproject.toml): started
2024-01-06T06:53:53,926   Running command Preparing metadata (pyproject.toml)
2024-01-06T06:53:54,477   running dist_info
2024-01-06T06:53:54,497   creating /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info
2024-01-06T06:53:54,501   writing /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/PKG-INFO
2024-01-06T06:53:54,506   writing dependency_links to /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/dependency_links.txt
2024-01-06T06:53:54,508   writing entry points to /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/entry_points.txt
2024-01-06T06:53:54,510   writing requirements to /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/requires.txt
2024-01-06T06:53:54,511   writing top-level names to /tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/top_level.txt
2024-01-06T06:53:54,512   writing manifest file '/tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:54,609   reading manifest file '/tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:54,611   reading manifest template 'MANIFEST.in'
2024-01-06T06:53:55,109   adding license file 'LICENSE'
2024-01-06T06:53:55,129   writing manifest file '/tmp/pip-modern-metadata-wi9g44bp/galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:55,131   creating '/tmp/pip-modern-metadata-wi9g44bp/galaxy_app-23.1.4.dist-info'
2024-01-06T06:53:55,328   Preparing metadata (pyproject.toml): finished with status 'done'
2024-01-06T06:53:55,334   Source in /tmp/pip-wheel-_z313um_/galaxy-app_8213a7f3dfc84a689e4a61db645aa9ef has version 23.1.4, which satisfies requirement galaxy-app==23.1.4 from https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz
2024-01-06T06:53:55,335   Removed galaxy-app==23.1.4 from https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-2bt9uma2'
2024-01-06T06:53:55,343 Created temporary directory: /tmp/pip-unpack-qbli78ri
2024-01-06T06:53:55,344 Created temporary directory: /tmp/pip-unpack-d13p5ymy
2024-01-06T06:53:55,390 Building wheels for collected packages: galaxy-app
2024-01-06T06:53:55,394   Created temporary directory: /tmp/pip-wheel-wqiviagd
2024-01-06T06:53:55,395   Destination directory: /tmp/pip-wheel-wqiviagd
2024-01-06T06:53:55,397   Building wheel for galaxy-app (pyproject.toml): started
2024-01-06T06:53:55,398   Running command Building wheel for galaxy-app (pyproject.toml)
2024-01-06T06:53:55,975   running bdist_wheel
2024-01-06T06:53:56,015   running build
2024-01-06T06:53:56,016   running build_py
2024-01-06T06:53:56,023   creating build
2024-01-06T06:53:56,023   creating build/lib
2024-01-06T06:53:56,024   creating build/lib/tool_shed_client
2024-01-06T06:53:56,025   copying tool_shed_client/__init__.py -> build/lib/tool_shed_client
2024-01-06T06:53:56,027   creating build/lib/galaxy_ext
2024-01-06T06:53:56,028   copying galaxy_ext/__init__.py -> build/lib/galaxy_ext
2024-01-06T06:53:56,031   creating build/lib/galaxy
2024-01-06T06:53:56,032   copying galaxy/app.py -> build/lib/galaxy
2024-01-06T06:53:56,035   copying galaxy/queues.py -> build/lib/galaxy
2024-01-06T06:53:56,036   copying galaxy/main_config.py -> build/lib/galaxy
2024-01-06T06:53:56,038   copying galaxy/main.py -> build/lib/galaxy
2024-01-06T06:53:56,040   copying galaxy/queue_worker.py -> build/lib/galaxy
2024-01-06T06:53:56,043   copying galaxy/di.py -> build/lib/galaxy
2024-01-06T06:53:56,046   copying galaxy/config_watchers.py -> build/lib/galaxy
2024-01-06T06:53:56,048   copying galaxy/structured_app.py -> build/lib/galaxy
2024-01-06T06:53:56,050   copying galaxy/__init__.py -> build/lib/galaxy
2024-01-06T06:53:56,052   creating build/lib/tool_shed_client/schema
2024-01-06T06:53:56,053   copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema
2024-01-06T06:53:56,055   creating build/lib/galaxy_ext/metadata
2024-01-06T06:53:56,056   copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata
2024-01-06T06:53:56,058   copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata
2024-01-06T06:53:56,060   creating build/lib/galaxy_ext/container_monitor
2024-01-06T06:53:56,061   copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor
2024-01-06T06:53:56,063   copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor
2024-01-06T06:53:56,065   creating build/lib/galaxy_ext/expressions
2024-01-06T06:53:56,065   copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions
2024-01-06T06:53:56,067   copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions
2024-01-06T06:53:56,069   creating build/lib/galaxy/tool_shed
2024-01-06T06:53:56,070   copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed
2024-01-06T06:53:56,072   copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed
2024-01-06T06:53:56,073   copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed
2024-01-06T06:53:56,075   creating build/lib/galaxy/work
2024-01-06T06:53:56,076   copying galaxy/work/__init__.py -> build/lib/galaxy/work
2024-01-06T06:53:56,077   copying galaxy/work/context.py -> build/lib/galaxy/work
2024-01-06T06:53:56,079   creating build/lib/galaxy/dependencies
2024-01-06T06:53:56,080   copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies
2024-01-06T06:53:56,083   creating build/lib/galaxy/workflow
2024-01-06T06:53:56,084   copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,086   copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,089   copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,091   copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,093   copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,096   copying galaxy/workflow/run.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,099   copying galaxy/workflow/render.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,101   copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,103   copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow
2024-01-06T06:53:56,106   creating build/lib/galaxy/managers
2024-01-06T06:53:56,107   copying galaxy/managers/tools.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,109   copying galaxy/managers/hdas.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,112   copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,114   copying galaxy/managers/users.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,116   copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,119   copying galaxy/managers/quotas.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,121   copying galaxy/managers/notification.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,123   copying galaxy/managers/base.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,126   copying galaxy/managers/cloudauthzs.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,128   copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,130   copying galaxy/managers/lddas.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,132   copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,134   copying galaxy/managers/session.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,136   copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,138   copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,139   copying galaxy/managers/cloud.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,142   copying galaxy/managers/deletable.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,144   copying galaxy/managers/folders.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,146   copying galaxy/managers/group_users.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,148   copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,150   copying galaxy/managers/metrics.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,152   copying galaxy/managers/histories.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,155   copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,157   copying galaxy/managers/tasks.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,158   copying galaxy/managers/groups.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,160   copying galaxy/managers/collections.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,163   copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,164   copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,166   copying galaxy/managers/taggable.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,168   copying galaxy/managers/pages.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,170   copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,172   copying galaxy/managers/configuration.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,175   copying galaxy/managers/libraries.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,177   copying galaxy/managers/citations.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,179   copying galaxy/managers/sharable.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,181   copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,183   copying galaxy/managers/workflows.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,187   copying galaxy/managers/datasets.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,189   copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,191   copying galaxy/managers/licenses.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,193   copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,195   copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,197   copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,199   copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,201   copying galaxy/managers/secured.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,203   copying galaxy/managers/executables.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,205   copying galaxy/managers/genomes.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,206   copying galaxy/managers/__init__.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,208   copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,210   copying galaxy/managers/context.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,212   copying galaxy/managers/tags.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,214   copying galaxy/managers/roles.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,215   copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,218   copying galaxy/managers/jobs.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,220   copying galaxy/managers/ratable.py -> build/lib/galaxy/managers
2024-01-06T06:53:56,223   creating build/lib/galaxy/authnz
2024-01-06T06:53:56,225   copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz
2024-01-06T06:53:56,228   copying galaxy/authnz/util.py -> build/lib/galaxy/authnz
2024-01-06T06:53:56,229   copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz
2024-01-06T06:53:56,232   copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz
2024-01-06T06:53:56,234   copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz
2024-01-06T06:53:56,238   creating build/lib/galaxy/jobs
2024-01-06T06:53:56,239   copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,243   copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,245   copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,249   copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,251   copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,254   copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,257   copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,259   copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs
2024-01-06T06:53:56,264   creating build/lib/galaxy/app_unittest_utils
2024-01-06T06:53:56,266   copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils
2024-01-06T06:53:56,268   copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils
2024-01-06T06:53:56,271   copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils
2024-01-06T06:53:56,273   creating build/lib/galaxy/visualization
2024-01-06T06:53:56,273   copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization
2024-01-06T06:53:56,276   copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization
2024-01-06T06:53:56,278   creating build/lib/galaxy/celery
2024-01-06T06:53:56,278   copying galaxy/celery/tasks.py -> build/lib/galaxy/celery
2024-01-06T06:53:56,281   copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery
2024-01-06T06:53:56,282   copying galaxy/celery/__init__.py -> build/lib/galaxy/celery
2024-01-06T06:53:56,285   creating build/lib/galaxy/actions
2024-01-06T06:53:56,286   copying galaxy/actions/library.py -> build/lib/galaxy/actions
2024-01-06T06:53:56,288   copying galaxy/actions/__init__.py -> build/lib/galaxy/actions
2024-01-06T06:53:56,290   creating build/lib/galaxy/tools
2024-01-06T06:53:56,291   copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,293   copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,295   copying galaxy/tools/repositories.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,297   copying galaxy/tools/cache.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,299   copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,302   copying galaxy/tools/execute.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,304   copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,307   copying galaxy/tools/biotools.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,308   copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,311   copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,312   copying galaxy/tools/test.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,315   copying galaxy/tools/errors.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,317   copying galaxy/tools/__init__.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,322   copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools
2024-01-06T06:53:56,325   creating build/lib/galaxy/webhooks
2024-01-06T06:53:56,326   copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks
2024-01-06T06:53:56,328   creating build/lib/galaxy/forms
2024-01-06T06:53:56,329   copying galaxy/forms/forms.py -> build/lib/galaxy/forms
2024-01-06T06:53:56,332   copying galaxy/forms/__init__.py -> build/lib/galaxy/forms
2024-01-06T06:53:56,333   creating build/lib/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:56,334   copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:56,338   copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:56,340   copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:56,343   copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:56,344   creating build/lib/galaxy/tool_shed/metadata
2024-01-06T06:53:56,345   copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata
2024-01-06T06:53:56,349   copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata
2024-01-06T06:53:56,351   creating build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,352   copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,355   copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,356   copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,358   copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,360   copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,362   copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,364   copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,367   copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,369   copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,371   copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,373   copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util
2024-01-06T06:53:56,374   creating build/lib/galaxy/tool_shed/tools
2024-01-06T06:53:56,375   copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools
2024-01-06T06:53:56,377   copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools
2024-01-06T06:53:56,379   copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools
2024-01-06T06:53:56,381   creating build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:56,382   copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:56,384   copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:56,386   creating build/lib/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:56,387   copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:56,389   copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:56,392   copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:56,393   creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:56,394   copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:56,397   copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:56,399   creating build/lib/galaxy/workflow/resources
2024-01-06T06:53:56,400   copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources
2024-01-06T06:53:56,403   creating build/lib/galaxy/workflow/refactor
2024-01-06T06:53:56,404   copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor
2024-01-06T06:53:56,406   copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor
2024-01-06T06:53:56,409   copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor
2024-01-06T06:53:56,410   creating build/lib/galaxy/workflow/reports
2024-01-06T06:53:56,411   copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports
2024-01-06T06:53:56,414   creating build/lib/galaxy/workflow/schedulers
2024-01-06T06:53:56,414   copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers
2024-01-06T06:53:56,416   copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers
2024-01-06T06:53:56,419   creating build/lib/galaxy/workflow/reports/generators
2024-01-06T06:53:56,420   copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators
2024-01-06T06:53:56,421   copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators
2024-01-06T06:53:56,424   creating build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,424   copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,427   copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,429   copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,432   copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,434   copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,436   copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,438   copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,441   copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,443   copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,445   copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,447   copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,449   copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,451   copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,453   copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,456   copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners
2024-01-06T06:53:56,459   creating build/lib/galaxy/jobs/rules
2024-01-06T06:53:56,460   copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules
2024-01-06T06:53:56,462   creating build/lib/galaxy/jobs/splitters
2024-01-06T06:53:56,463   copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters
2024-01-06T06:53:56,465   copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters
2024-01-06T06:53:56,467   copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters
2024-01-06T06:53:56,468   creating build/lib/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:56,469   copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:56,472   copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:56,474   copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:56,476   creating build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,477   copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,479   copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,480   copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,482   copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,484   copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,486   copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,488   copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,489   copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util
2024-01-06T06:53:56,492   creating build/lib/galaxy/jobs/runners/util/condor
2024-01-06T06:53:56,493   copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor
2024-01-06T06:53:56,496   creating build/lib/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:56,497   copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:56,500   creating build/lib/galaxy/jobs/runners/util/cli
2024-01-06T06:53:56,500   copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli
2024-01-06T06:53:56,502   copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli
2024-01-06T06:53:56,504   creating build/lib/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:56,505   copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:56,507   copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:56,509   copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:56,511   creating build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,512   copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,514   copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,516   copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,517   copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,519   copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,520   copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:56,522   creating build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,523   copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,526   copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,527   copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,529   copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,532   copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers
2024-01-06T06:53:56,534   creating build/lib/galaxy/visualization/tracks
2024-01-06T06:53:56,535   copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks
2024-01-06T06:53:56,537   creating build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,538   copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,541   copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,543   copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,545   copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,547   copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,549   copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins
2024-01-06T06:53:56,551   creating build/lib/galaxy/visualization/genome
2024-01-06T06:53:56,552   copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome
2024-01-06T06:53:56,554   creating build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,555   copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,557   copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,559   copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,561   copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,563   copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:56,565   creating build/lib/galaxy/tools/data
2024-01-06T06:53:56,566   copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data
2024-01-06T06:53:56,568   creating build/lib/galaxy/tools/error_reports
2024-01-06T06:53:56,569   copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports
2024-01-06T06:53:56,571   creating build/lib/galaxy/tools/util
2024-01-06T06:53:56,572   copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util
2024-01-06T06:53:56,574   copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util
2024-01-06T06:53:56,576   creating build/lib/galaxy/tools/expressions
2024-01-06T06:53:56,577   copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions
2024-01-06T06:53:56,579   copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions
2024-01-06T06:53:56,580   copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions
2024-01-06T06:53:56,582   copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions
2024-01-06T06:53:56,584   creating build/lib/galaxy/tools/actions
2024-01-06T06:53:56,585   copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,587   copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,589   copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,591   copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,593   copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,595   copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,597   copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,599   copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions
2024-01-06T06:53:56,602   creating build/lib/galaxy/tools/filters
2024-01-06T06:53:56,603   copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters
2024-01-06T06:53:56,606   creating build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:56,607   copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:56,609   copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:56,611   copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:56,613   creating build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,614   copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,617   copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,619   copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,624   copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,626   copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,628   copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,630   copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,633   copying galaxy/tools/parameters/history_query.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,635   copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,637   copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,640   copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,642   copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters
2024-01-06T06:53:56,644   creating build/lib/galaxy/tools/search
2024-01-06T06:53:56,645   copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search
2024-01-06T06:53:56,648   creating build/lib/galaxy/tools/data_manager
2024-01-06T06:53:56,649   copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager
2024-01-06T06:53:56,651   copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager
2024-01-06T06:53:56,653   creating build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,654   copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,656   copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,658   copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,659   copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,661   copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,663   copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,664   copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,666   copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,668   copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins
2024-01-06T06:53:56,670   creating build/lib/galaxy/tools/util/galaxyops
2024-01-06T06:53:56,671   copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops
2024-01-06T06:53:56,673   running egg_info
2024-01-06T06:53:56,676   writing galaxy_app.egg-info/PKG-INFO
2024-01-06T06:53:56,681   writing dependency_links to galaxy_app.egg-info/dependency_links.txt
2024-01-06T06:53:56,682   writing entry points to galaxy_app.egg-info/entry_points.txt
2024-01-06T06:53:56,684   writing requirements to galaxy_app.egg-info/requires.txt
2024-01-06T06:53:56,685   writing top-level names to galaxy_app.egg-info/top_level.txt
2024-01-06T06:53:56,738   reading manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:56,752   reading manifest template 'MANIFEST.in'
2024-01-06T06:53:57,256   adding license file 'LICENSE'
2024-01-06T06:53:57,282   writing manifest file 'galaxy_app.egg-info/SOURCES.txt'
2024-01-06T06:53:57,287   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration.
2024-01-06T06:53:57,288   !!

2024-01-06T06:53:57,289           ********************************************************************************
2024-01-06T06:53:57,289           ############################
2024-01-06T06:53:57,290           # Package would be ignored #
2024-01-06T06:53:57,290           ############################
2024-01-06T06:53:57,291           Python recognizes 'galaxy.tools.bundled' as an importable package[^1],
2024-01-06T06:53:57,291           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,292           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,293           package, please make sure that 'galaxy.tools.bundled' is explicitly added
2024-01-06T06:53:57,294           to the `packages` configuration field.

2024-01-06T06:53:57,295           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,295           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,296           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,297           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,298           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,299           If you don't want 'galaxy.tools.bundled' to be distributed and are
2024-01-06T06:53:57,299           already explicitly excluding 'galaxy.tools.bundled' via
2024-01-06T06:53:57,300           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,300           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,300           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,301           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,302           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,303           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,304                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,304                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,304                 directory, all directories are treated like packages.
2024-01-06T06:53:57,305           ********************************************************************************

2024-01-06T06:53:57,306   !!
2024-01-06T06:53:57,306     check.warn(importable)
2024-01-06T06:53:57,307   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration.
2024-01-06T06:53:57,307   !!

2024-01-06T06:53:57,308           ********************************************************************************
2024-01-06T06:53:57,309           ############################
2024-01-06T06:53:57,310           # Package would be ignored #
2024-01-06T06:53:57,310           ############################
2024-01-06T06:53:57,311           Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1],
2024-01-06T06:53:57,311           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,313           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,313           package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added
2024-01-06T06:53:57,314           to the `packages` configuration field.

2024-01-06T06:53:57,315           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,316           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,316           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,317           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,319           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,320           If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are
2024-01-06T06:53:57,320           already explicitly excluding 'galaxy.tools.bundled.data_export' via
2024-01-06T06:53:57,321           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,321           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,322           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,323           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,324           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,326           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,326                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,327                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,328                 directory, all directories are treated like packages.
2024-01-06T06:53:57,328           ********************************************************************************

2024-01-06T06:53:57,329   !!
2024-01-06T06:53:57,330     check.warn(importable)
2024-01-06T06:53:57,330   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration.
2024-01-06T06:53:57,330   !!

2024-01-06T06:53:57,331           ********************************************************************************
2024-01-06T06:53:57,331           ############################
2024-01-06T06:53:57,332           # Package would be ignored #
2024-01-06T06:53:57,332           ############################
2024-01-06T06:53:57,333           Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1],
2024-01-06T06:53:57,333           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,334           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,334           package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added
2024-01-06T06:53:57,335           to the `packages` configuration field.

2024-01-06T06:53:57,335           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,336           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,336           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,338           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,339           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,340           If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are
2024-01-06T06:53:57,340           already explicitly excluding 'galaxy.tools.bundled.data_source' via
2024-01-06T06:53:57,341           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,341           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,342           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,343           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,344           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,346           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,347                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,347                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,348                 directory, all directories are treated like packages.
2024-01-06T06:53:57,349           ********************************************************************************

2024-01-06T06:53:57,350   !!
2024-01-06T06:53:57,350     check.warn(importable)
2024-01-06T06:53:57,351   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration.
2024-01-06T06:53:57,351   !!

2024-01-06T06:53:57,353           ********************************************************************************
2024-01-06T06:53:57,353           ############################
2024-01-06T06:53:57,354           # Package would be ignored #
2024-01-06T06:53:57,354           ############################
2024-01-06T06:53:57,355           Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1],
2024-01-06T06:53:57,356           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,357           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,358           package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added
2024-01-06T06:53:57,358           to the `packages` configuration field.

2024-01-06T06:53:57,359           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,359           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,360           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,361           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,362           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,362           If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are
2024-01-06T06:53:57,363           already explicitly excluding 'galaxy.tools.bundled.expression_tools' via
2024-01-06T06:53:57,363           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,364           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,364           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,365           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,366           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,367           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,368                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,368                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,369                 directory, all directories are treated like packages.
2024-01-06T06:53:57,369           ********************************************************************************

2024-01-06T06:53:57,370   !!
2024-01-06T06:53:57,371     check.warn(importable)
2024-01-06T06:53:57,371   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration.
2024-01-06T06:53:57,372   !!

2024-01-06T06:53:57,373           ********************************************************************************
2024-01-06T06:53:57,373           ############################
2024-01-06T06:53:57,374           # Package would be ignored #
2024-01-06T06:53:57,374           ############################
2024-01-06T06:53:57,375           Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1],
2024-01-06T06:53:57,375           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,377           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,377           package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added
2024-01-06T06:53:57,378           to the `packages` configuration field.

2024-01-06T06:53:57,379           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,380           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,380           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,382           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,383           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,384           If you don't want 'galaxy.tools.bundled.extract' to be distributed and are
2024-01-06T06:53:57,384           already explicitly excluding 'galaxy.tools.bundled.extract' via
2024-01-06T06:53:57,385           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,385           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,386           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,387           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,388           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,389           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,390                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,390                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,391                 directory, all directories are treated like packages.
2024-01-06T06:53:57,392           ********************************************************************************

2024-01-06T06:53:57,393   !!
2024-01-06T06:53:57,394     check.warn(importable)
2024-01-06T06:53:57,394   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration.
2024-01-06T06:53:57,395   !!

2024-01-06T06:53:57,396           ********************************************************************************
2024-01-06T06:53:57,396           ############################
2024-01-06T06:53:57,397           # Package would be ignored #
2024-01-06T06:53:57,397           ############################
2024-01-06T06:53:57,398           Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1],
2024-01-06T06:53:57,398           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,399           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,400           package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added
2024-01-06T06:53:57,400           to the `packages` configuration field.

2024-01-06T06:53:57,401           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,402           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,402           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,403           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,404           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,405           If you don't want 'galaxy.tools.bundled.filters' to be distributed and are
2024-01-06T06:53:57,405           already explicitly excluding 'galaxy.tools.bundled.filters' via
2024-01-06T06:53:57,406           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,406           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,407           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,408           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,409           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,410           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,411                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,412                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,412                 directory, all directories are treated like packages.
2024-01-06T06:53:57,413           ********************************************************************************

2024-01-06T06:53:57,414   !!
2024-01-06T06:53:57,414     check.warn(importable)
2024-01-06T06:53:57,415   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration.
2024-01-06T06:53:57,415   !!

2024-01-06T06:53:57,416           ********************************************************************************
2024-01-06T06:53:57,417           ############################
2024-01-06T06:53:57,417           # Package would be ignored #
2024-01-06T06:53:57,418           ############################
2024-01-06T06:53:57,418           Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1],
2024-01-06T06:53:57,418           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,419           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,420           package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added
2024-01-06T06:53:57,420           to the `packages` configuration field.

2024-01-06T06:53:57,421           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,422           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,422           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,423           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,424           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,425           If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are
2024-01-06T06:53:57,425           already explicitly excluding 'galaxy.tools.bundled.filters.gff' via
2024-01-06T06:53:57,426           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,426           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,427           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,428           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,429           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,430           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,431                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,431                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,431                 directory, all directories are treated like packages.
2024-01-06T06:53:57,432           ********************************************************************************

2024-01-06T06:53:57,433   !!
2024-01-06T06:53:57,434     check.warn(importable)
2024-01-06T06:53:57,434   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration.
2024-01-06T06:53:57,434   !!

2024-01-06T06:53:57,436           ********************************************************************************
2024-01-06T06:53:57,436           ############################
2024-01-06T06:53:57,437           # Package would be ignored #
2024-01-06T06:53:57,437           ############################
2024-01-06T06:53:57,438           Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1],
2024-01-06T06:53:57,438           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,439           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,440           package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added
2024-01-06T06:53:57,440           to the `packages` configuration field.

2024-01-06T06:53:57,441           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,442           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,442           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,444           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,444           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,445           If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are
2024-01-06T06:53:57,446           already explicitly excluding 'galaxy.tools.bundled.interactive' via
2024-01-06T06:53:57,446           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,447           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,447           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,448           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,449           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,450           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,451                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,451                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,451                 directory, all directories are treated like packages.
2024-01-06T06:53:57,452           ********************************************************************************

2024-01-06T06:53:57,453   !!
2024-01-06T06:53:57,453     check.warn(importable)
2024-01-06T06:53:57,454   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration.
2024-01-06T06:53:57,454   !!

2024-01-06T06:53:57,455           ********************************************************************************
2024-01-06T06:53:57,456           ############################
2024-01-06T06:53:57,456           # Package would be ignored #
2024-01-06T06:53:57,456           ############################
2024-01-06T06:53:57,457           Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1],
2024-01-06T06:53:57,457           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,458           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,459           package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added
2024-01-06T06:53:57,459           to the `packages` configuration field.

2024-01-06T06:53:57,460           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,461           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,461           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,462           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,463           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,464           If you don't want 'galaxy.tools.bundled.maf' to be distributed and are
2024-01-06T06:53:57,465           already explicitly excluding 'galaxy.tools.bundled.maf' via
2024-01-06T06:53:57,465           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,466           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,466           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,467           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,468           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,470           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,470                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,471                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,471                 directory, all directories are treated like packages.
2024-01-06T06:53:57,472           ********************************************************************************

2024-01-06T06:53:57,473   !!
2024-01-06T06:53:57,473     check.warn(importable)
2024-01-06T06:53:57,474   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration.
2024-01-06T06:53:57,474   !!

2024-01-06T06:53:57,475           ********************************************************************************
2024-01-06T06:53:57,475           ############################
2024-01-06T06:53:57,476           # Package would be ignored #
2024-01-06T06:53:57,476           ############################
2024-01-06T06:53:57,476           Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1],
2024-01-06T06:53:57,477           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,478           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,478           package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added
2024-01-06T06:53:57,479           to the `packages` configuration field.

2024-01-06T06:53:57,479           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,480           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,480           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,481           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,482           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,483           If you don't want 'galaxy.tools.bundled.meme' to be distributed and are
2024-01-06T06:53:57,483           already explicitly excluding 'galaxy.tools.bundled.meme' via
2024-01-06T06:53:57,484           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,484           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,485           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,486           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,486           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,488           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,488                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,489                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,489                 directory, all directories are treated like packages.
2024-01-06T06:53:57,490           ********************************************************************************

2024-01-06T06:53:57,491   !!
2024-01-06T06:53:57,491     check.warn(importable)
2024-01-06T06:53:57,492   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration.
2024-01-06T06:53:57,492   !!

2024-01-06T06:53:57,493           ********************************************************************************
2024-01-06T06:53:57,494           ############################
2024-01-06T06:53:57,494           # Package would be ignored #
2024-01-06T06:53:57,495           ############################
2024-01-06T06:53:57,495           Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1],
2024-01-06T06:53:57,495           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,496           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,497           package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added
2024-01-06T06:53:57,498           to the `packages` configuration field.

2024-01-06T06:53:57,498           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,499           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,499           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,500           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,501           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,502           If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are
2024-01-06T06:53:57,502           already explicitly excluding 'galaxy.tools.bundled.metag_tools' via
2024-01-06T06:53:57,502           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,503           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,504           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,505           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,505           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,507           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,507                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,507                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,508                 directory, all directories are treated like packages.
2024-01-06T06:53:57,508           ********************************************************************************

2024-01-06T06:53:57,509   !!
2024-01-06T06:53:57,510     check.warn(importable)
2024-01-06T06:53:57,511   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration.
2024-01-06T06:53:57,511   !!

2024-01-06T06:53:57,512           ********************************************************************************
2024-01-06T06:53:57,513           ############################
2024-01-06T06:53:57,513           # Package would be ignored #
2024-01-06T06:53:57,514           ############################
2024-01-06T06:53:57,514           Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1],
2024-01-06T06:53:57,514           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,515           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,516           package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added
2024-01-06T06:53:57,516           to the `packages` configuration field.

2024-01-06T06:53:57,517           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,518           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,518           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,519           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,520           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,521           If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are
2024-01-06T06:53:57,522           already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via
2024-01-06T06:53:57,522           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,523           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,523           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,524           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,525           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,527           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,527                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,527                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,528                 directory, all directories are treated like packages.
2024-01-06T06:53:57,528           ********************************************************************************

2024-01-06T06:53:57,529   !!
2024-01-06T06:53:57,529     check.warn(importable)
2024-01-06T06:53:57,530   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration.
2024-01-06T06:53:57,530   !!

2024-01-06T06:53:57,531           ********************************************************************************
2024-01-06T06:53:57,531           ############################
2024-01-06T06:53:57,532           # Package would be ignored #
2024-01-06T06:53:57,532           ############################
2024-01-06T06:53:57,533           Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1],
2024-01-06T06:53:57,533           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,534           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,534           package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added
2024-01-06T06:53:57,535           to the `packages` configuration field.

2024-01-06T06:53:57,536           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,536           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,536           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,537           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,538           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,539           If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are
2024-01-06T06:53:57,540           already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via
2024-01-06T06:53:57,540           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,541           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,541           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,542           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,543           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,544           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,545                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,546                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,546                 directory, all directories are treated like packages.
2024-01-06T06:53:57,546           ********************************************************************************

2024-01-06T06:53:57,548   !!
2024-01-06T06:53:57,548     check.warn(importable)
2024-01-06T06:53:57,549   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration.
2024-01-06T06:53:57,549   !!

2024-01-06T06:53:57,550           ********************************************************************************
2024-01-06T06:53:57,551           ############################
2024-01-06T06:53:57,551           # Package would be ignored #
2024-01-06T06:53:57,552           ############################
2024-01-06T06:53:57,552           Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1],
2024-01-06T06:53:57,553           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,554           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,554           package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added
2024-01-06T06:53:57,554           to the `packages` configuration field.

2024-01-06T06:53:57,555           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,556           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,556           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,557           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,558           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,559           If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are
2024-01-06T06:53:57,559           already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via
2024-01-06T06:53:57,560           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,560           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,561           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,562           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,563           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,564           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,564                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,565                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,565                 directory, all directories are treated like packages.
2024-01-06T06:53:57,566           ********************************************************************************

2024-01-06T06:53:57,567   !!
2024-01-06T06:53:57,567     check.warn(importable)
2024-01-06T06:53:57,568   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration.
2024-01-06T06:53:57,568   !!

2024-01-06T06:53:57,569           ********************************************************************************
2024-01-06T06:53:57,569           ############################
2024-01-06T06:53:57,570           # Package would be ignored #
2024-01-06T06:53:57,570           ############################
2024-01-06T06:53:57,571           Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1],
2024-01-06T06:53:57,571           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,572           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,573           package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added
2024-01-06T06:53:57,573           to the `packages` configuration field.

2024-01-06T06:53:57,574           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,575           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,575           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,577           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,578           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,578           If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are
2024-01-06T06:53:57,579           already explicitly excluding 'galaxy.tools.bundled.plotting' via
2024-01-06T06:53:57,579           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,580           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,580           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,581           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,582           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,583           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,584                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,584                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,585                 directory, all directories are treated like packages.
2024-01-06T06:53:57,586           ********************************************************************************

2024-01-06T06:53:57,587   !!
2024-01-06T06:53:57,587     check.warn(importable)
2024-01-06T06:53:57,587   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration.
2024-01-06T06:53:57,588   !!

2024-01-06T06:53:57,589           ********************************************************************************
2024-01-06T06:53:57,590           ############################
2024-01-06T06:53:57,590           # Package would be ignored #
2024-01-06T06:53:57,591           ############################
2024-01-06T06:53:57,591           Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1],
2024-01-06T06:53:57,592           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,593           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,593           package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added
2024-01-06T06:53:57,594           to the `packages` configuration field.

2024-01-06T06:53:57,595           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,595           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,596           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,597           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,598           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,599           If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are
2024-01-06T06:53:57,600           already explicitly excluding 'galaxy.tools.bundled.solid_tools' via
2024-01-06T06:53:57,600           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,601           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,602           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,603           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,604           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,605           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,606                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,607                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,607                 directory, all directories are treated like packages.
2024-01-06T06:53:57,608           ********************************************************************************

2024-01-06T06:53:57,609   !!
2024-01-06T06:53:57,609     check.warn(importable)
2024-01-06T06:53:57,610   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration.
2024-01-06T06:53:57,610   !!

2024-01-06T06:53:57,611           ********************************************************************************
2024-01-06T06:53:57,611           ############################
2024-01-06T06:53:57,612           # Package would be ignored #
2024-01-06T06:53:57,612           ############################
2024-01-06T06:53:57,613           Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1],
2024-01-06T06:53:57,613           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,614           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,614           package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added
2024-01-06T06:53:57,615           to the `packages` configuration field.

2024-01-06T06:53:57,616           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,616           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,616           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,617           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,618           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,619           If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are
2024-01-06T06:53:57,620           already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via
2024-01-06T06:53:57,620           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,621           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,621           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,622           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,623           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,625           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,626                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,626                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,627                 directory, all directories are treated like packages.
2024-01-06T06:53:57,627           ********************************************************************************

2024-01-06T06:53:57,628   !!
2024-01-06T06:53:57,629     check.warn(importable)
2024-01-06T06:53:57,629   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration.
2024-01-06T06:53:57,630   !!

2024-01-06T06:53:57,631           ********************************************************************************
2024-01-06T06:53:57,631           ############################
2024-01-06T06:53:57,632           # Package would be ignored #
2024-01-06T06:53:57,632           ############################
2024-01-06T06:53:57,633           Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1],
2024-01-06T06:53:57,633           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,635           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,635           package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added
2024-01-06T06:53:57,635           to the `packages` configuration field.

2024-01-06T06:53:57,636           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,637           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,637           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,638           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,639           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,640           If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are
2024-01-06T06:53:57,640           already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via
2024-01-06T06:53:57,641           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,641           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,642           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,643           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,644           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,645           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,646                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,646                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,647                 directory, all directories are treated like packages.
2024-01-06T06:53:57,647           ********************************************************************************

2024-01-06T06:53:57,648   !!
2024-01-06T06:53:57,649     check.warn(importable)
2024-01-06T06:53:57,650   /tmp/pip-build-env-nav8_mrb/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration.
2024-01-06T06:53:57,650   !!

2024-01-06T06:53:57,651           ********************************************************************************
2024-01-06T06:53:57,652           ############################
2024-01-06T06:53:57,653           # Package would be ignored #
2024-01-06T06:53:57,653           ############################
2024-01-06T06:53:57,654           Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1],
2024-01-06T06:53:57,654           but it is absent from setuptools' `packages` configuration.

2024-01-06T06:53:57,656           This leads to an ambiguous overall configuration. If you want to distribute this
2024-01-06T06:53:57,656           package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added
2024-01-06T06:53:57,657           to the `packages` configuration field.

2024-01-06T06:53:57,658           Alternatively, you can also rely on setuptools' discovery methods
2024-01-06T06:53:57,659           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2024-01-06T06:53:57,660           instead of `find_packages(...)`/`find:`).

2024-01-06T06:53:57,661           You can read more about "package discovery" on setuptools documentation page:

2024-01-06T06:53:57,662           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2024-01-06T06:53:57,664           If you don't want 'galaxy.tools.bundled.stats' to be distributed and are
2024-01-06T06:53:57,664           already explicitly excluding 'galaxy.tools.bundled.stats' via
2024-01-06T06:53:57,665           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2024-01-06T06:53:57,666           you can try to use `exclude_package_data`, or `include-package-data=False` in
2024-01-06T06:53:57,666           combination with a more fine grained `package-data` configuration.

2024-01-06T06:53:57,668           You can read more about "package data files" on setuptools documentation page:

2024-01-06T06:53:57,669           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2024-01-06T06:53:57,670           [^1]: For Python, any directory (with suitable naming) can be imported,
2024-01-06T06:53:57,671                 even if it does not contain any `.py` files.
2024-01-06T06:53:57,671                 On the other hand, currently there is no concept of package data
2024-01-06T06:53:57,672                 directory, all directories are treated like packages.
2024-01-06T06:53:57,673           ********************************************************************************

2024-01-06T06:53:57,674   !!
2024-01-06T06:53:57,674     check.warn(importable)
2024-01-06T06:53:57,675   copying galaxy_ext/py.typed -> build/lib/galaxy_ext
2024-01-06T06:53:57,675   copying galaxy/py.typed -> build/lib/galaxy
2024-01-06T06:53:57,676   copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies
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2024-01-06T06:53:57,683   copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools
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2024-01-06T06:53:57,697   creating build/lib/galaxy/tools/bundled/data_source
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2024-01-06T06:53:57,766   creating build/lib/galaxy/tools/bundled/filters/gff
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2024-01-06T06:53:58,115   copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,117   copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,119   copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,121   copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,123   copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,125   copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats
2024-01-06T06:53:58,127   copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources
2024-01-06T06:53:58,129   copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,131   copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,133   copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,135   copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions
2024-01-06T06:53:58,137   copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:58,139   copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:58,141   copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp
2024-01-06T06:53:58,177   installing to build/bdist.linux-armv7l/wheel
2024-01-06T06:53:58,178   running install
2024-01-06T06:53:58,201   running install_lib
2024-01-06T06:53:58,208   creating build/bdist.linux-armv7l
2024-01-06T06:53:58,208   creating build/bdist.linux-armv7l/wheel
2024-01-06T06:53:58,210   creating build/bdist.linux-armv7l/wheel/tool_shed_client
2024-01-06T06:53:58,211   creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-01-06T06:53:58,213   copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client/schema
2024-01-06T06:53:58,215   copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/tool_shed_client
2024-01-06T06:53:58,217   creating build/bdist.linux-armv7l/wheel/galaxy_ext
2024-01-06T06:53:58,218   creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-01-06T06:53:58,219   copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-01-06T06:53:58,221   copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/metadata
2024-01-06T06:53:58,223   creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-01-06T06:53:58,224   copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-01-06T06:53:58,226   copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor
2024-01-06T06:53:58,227   copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/galaxy_ext
2024-01-06T06:53:58,229   creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-01-06T06:53:58,230   copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-01-06T06:53:58,232   copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext/expressions
2024-01-06T06:53:58,234   copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy_ext
2024-01-06T06:53:58,236   creating build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:58,238   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-01-06T06:53:58,239   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:58,240   copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:58,243   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:58,244   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:58,246   copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata
2024-01-06T06:53:58,248   copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:58,251   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:58,252   copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:58,255   copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:58,257   copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools
2024-01-06T06:53:58,258   copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:58,261   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:58,262   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:58,264   copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies
2024-01-06T06:53:58,266   copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install
2024-01-06T06:53:58,268   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-01-06T06:53:58,269   copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-01-06T06:53:58,272   copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata
2024-01-06T06:53:58,274   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,275   copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,278   copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,280   copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,282   copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,284   copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,286   copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,288   copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,291   copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,294   copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,295   copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,298   copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util
2024-01-06T06:53:58,299   copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-01-06T06:53:58,301   copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-01-06T06:53:58,303   creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-01-06T06:53:58,303   copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-01-06T06:53:58,306   copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-01-06T06:53:58,308   copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools
2024-01-06T06:53:58,309   copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_shed
2024-01-06T06:53:58,311   creating build/bdist.linux-armv7l/wheel/galaxy/work
2024-01-06T06:53:58,312   copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2024-01-06T06:53:58,314   copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/galaxy/work
2024-01-06T06:53:58,316   copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:58,319   creating build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,320   copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,322   copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,324   copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,325   copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,328   copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,329   copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,332   copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,334   copying build/lib/galaxy/dependencies/typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,335   copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,337   copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/dependencies
2024-01-06T06:53:58,339   copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:58,341   creating build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,342   copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,344   copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,347   copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,349   copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,352   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-01-06T06:53:58,352   copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-01-06T06:53:58,354   copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/resources
2024-01-06T06:53:58,357   copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,361   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-01-06T06:53:58,362   copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-01-06T06:53:58,364   copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-01-06T06:53:58,366   copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor
2024-01-06T06:53:58,368   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2024-01-06T06:53:58,369   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-01-06T06:53:58,370   copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-01-06T06:53:58,372   copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators
2024-01-06T06:53:58,374   copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/reports
2024-01-06T06:53:58,375   copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,378   creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-01-06T06:53:58,379   copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-01-06T06:53:58,381   copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers
2024-01-06T06:53:58,383   copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,385   copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,388   copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/workflow
2024-01-06T06:53:58,390   creating build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,391   copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,393   copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,396   copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,398   copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,401   copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,403   copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,405   copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,408   copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,411   copying build/lib/galaxy/managers/cloudauthzs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,412   copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,415   copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,425   copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,427   copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,428   copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,431   copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,432   copying build/lib/galaxy/managers/cloud.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,435   copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,437   copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,439   copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,441   copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,443   copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,445   copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,448   copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,449   copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,451   copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,454   copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,458   copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,460   copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,462   copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,465   copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,468   copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,471   copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,474   copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,477   copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,480   copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,483   copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,490   copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,495   copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,498   copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,501   copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,509   copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,512   copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,515   copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,517   copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,521   copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,524   copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,526   copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,529   copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,531   copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,533   copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,535   copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,538   copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,541   copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,543   copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,545   copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,548   copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,551   copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/galaxy/managers
2024-01-06T06:53:58,554   creating build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,555   copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,557   copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,559   copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,562   copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,564   copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/galaxy/authnz
2024-01-06T06:53:58,567   creating build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,567   copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,571   copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,573   copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,577   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,578   copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,581   copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,584   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:58,584   copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:58,587   copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:58,589   copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers
2024-01-06T06:53:58,591   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,592   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2024-01-06T06:53:58,593   copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor
2024-01-06T06:53:58,596   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,596   copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,598   copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,600   copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,602   copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script
2024-01-06T06:53:58,604   copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,606   copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,607   copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,609   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-01-06T06:53:58,610   copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-01-06T06:53:58,612   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:58,613   copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:58,615   copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:58,617   copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell
2024-01-06T06:53:58,619   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,620   copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,622   copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,624   copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,626   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,628   copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,630   copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job
2024-01-06T06:53:58,631   copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli
2024-01-06T06:53:58,633   copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,636   copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,638   copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,640   copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,642   copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util
2024-01-06T06:53:58,643   copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,646   copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,649   copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,651   copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,653   copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,656   copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,658   copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,660   copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,662   copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,664   copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,667   copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,669   copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,672   copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/runners
2024-01-06T06:53:58,675   copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,676   copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,678   copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,681   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2024-01-06T06:53:58,681   copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/rules
2024-01-06T06:53:58,683   copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,685   copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs
2024-01-06T06:53:58,690   creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-01-06T06:53:58,691   copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-01-06T06:53:58,693   copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-01-06T06:53:58,695   copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters
2024-01-06T06:53:58,697   creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-01-06T06:53:58,697   copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-01-06T06:53:58,700   copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-01-06T06:53:58,702   copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils
2024-01-06T06:53:58,704   copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:58,706   creating build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-01-06T06:53:58,707   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,708   copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,710   copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,712   copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,715   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,716   copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,718   copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,720   copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,722   copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,724   copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz
2024-01-06T06:53:58,726   copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,728   copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers
2024-01-06T06:53:58,731   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2024-01-06T06:53:58,731   copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks
2024-01-06T06:53:58,734   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,735   copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,737   copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,739   copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,742   copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,744   copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,746   copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins
2024-01-06T06:53:58,748   creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2024-01-06T06:53:58,749   copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization/genome
2024-01-06T06:53:58,751   copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-01-06T06:53:58,753   copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/visualization
2024-01-06T06:53:58,755   creating build/bdist.linux-armv7l/wheel/galaxy/celery
2024-01-06T06:53:58,756   copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-01-06T06:53:58,759   copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-01-06T06:53:58,760   copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/celery
2024-01-06T06:53:58,763   creating build/bdist.linux-armv7l/wheel/galaxy/actions
2024-01-06T06:53:58,764   copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2024-01-06T06:53:58,767   copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/actions
2024-01-06T06:53:58,769   creating build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:58,770   copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:58,772   copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:58,775   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data
2024-01-06T06:53:58,775   copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data
2024-01-06T06:53:58,778   copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:58,780   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2024-01-06T06:53:58,782   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,783   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,785   copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,787   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,789   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,791   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,793   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,794   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,796   copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,798   copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion
2024-01-06T06:53:58,800   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-01-06T06:53:58,801   copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-01-06T06:53:58,803   copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-01-06T06:53:58,806   copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools
2024-01-06T06:53:58,808   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,809   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,812   copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,814   copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,816   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,819   copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,822   copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,824   copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,826   copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping
2024-01-06T06:53:58,829   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-01-06T06:53:58,830   copying build/lib/galaxy/tools/bundled/data_export/send.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-01-06T06:53:58,832   copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-01-06T06:53:58,835   copying build/lib/galaxy/tools/bundled/data_export/send.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-01-06T06:53:58,837   copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export
2024-01-06T06:53:58,840   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,841   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,843   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,845   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,848   copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,850   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,852   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,854   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,856   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,858   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,862   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,864   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,866   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,869   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,871   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,873   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,875   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,877   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,879   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,881   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,883   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,886   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,888   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,890   copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,893   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,896   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,898   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,900   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,902   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,904   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,907   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,910   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,913   copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive
2024-01-06T06:53:58,915   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,916   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,919   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,922   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,924   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,926   copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,928   copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,931   copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools
2024-01-06T06:53:58,934   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,935   copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,937   copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,939   copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,942   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,944   copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,947   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,949   copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,951   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,953   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,955   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,957   copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,959   copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,962   copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,964   copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,966   copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,968   copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,970   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,973   copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,975   copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,977   copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,979   copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,981   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,983   copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,985   copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,986   copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association
2024-01-06T06:53:58,989   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:58,990   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:58,992   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:58,995   copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:58,997   copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:58,999   copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract
2024-01-06T06:53:59,002   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,002   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,005   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,006   copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,009   copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,011   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,012   copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,014   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,016   copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,018   copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,021   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,022   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,024   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,026   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,028   copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,030   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,032   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,034   copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,035   copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,037   copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff
2024-01-06T06:53:59,039   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,041   copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,043   copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,045   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,047   copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,049   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,051   copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,053   copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,055   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,057   copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,059   copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,061   copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,063   copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,065   copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,067   copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,069   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,071   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,073   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,074   copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,076   copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,078   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,080   copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,086   copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,087   copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,090   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,091   copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,093   copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,095   copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,097   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,099   copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,101   copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,103   copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,105   copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,107   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,108   copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,110   copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,112   copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,114   copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,116   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,118   copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,120   copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,122   copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,123   copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,125   copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,127   copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,129   copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,131   copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,133   copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,135   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,137   copying build/lib/galaxy/tools/bundled/filters/sorter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,139   copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,141   copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,143   copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,145   copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,148   copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,150   copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,152   copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,153   copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,155   copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,157   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,159   copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,160   copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,162   copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,163   copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,165   copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters
2024-01-06T06:53:59,167   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-01-06T06:53:59,168   copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-01-06T06:53:59,171   copying build/lib/galaxy/tools/bundled/meme/fimo_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-01-06T06:53:59,173   copying build/lib/galaxy/tools/bundled/meme/fimo.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-01-06T06:53:59,175   copying build/lib/galaxy/tools/bundled/meme/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme
2024-01-06T06:53:59,177   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-01-06T06:53:59,178   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-01-06T06:53:59,180   copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-01-06T06:53:59,182   copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting
2024-01-06T06:53:59,185   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,186   copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,188   copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,190   copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,192   copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,194   copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,196   copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,198   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,200   copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,202   copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,204   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,205   copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,208   copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,209   copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,211   copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,213   copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,215   copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,216   copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,218   copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,220   copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,222   copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,224   copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,226   copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,227   copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,229   copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,231   copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,233   copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,235   copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,237   copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,238   copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,240   copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,242   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,244   copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,246   copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,247   copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,249   copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,252   copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,254   copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,255   copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source
2024-01-06T06:53:59,258   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,260   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,263   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,265   copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,268   copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,270   copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly
2024-01-06T06:53:59,273   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,274   copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,277   copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,279   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,282   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,285   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,287   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,290   copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,292   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,295   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,297   copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,299   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,302   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,305   copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,308   copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,310   copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,313   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,316   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,318   copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,321   copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,324   copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,327   copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,329   copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,332   copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,335   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,337   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,339   copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,343   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,345   copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,348   copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,350   copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,353   copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,356   copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,358   copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,360   copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf
2024-01-06T06:53:59,363   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,364   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,367   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,369   copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,371   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,373   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,375   copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,377   copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,379   copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools
2024-01-06T06:53:59,381   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-01-06T06:53:59,382   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-01-06T06:53:59,385   copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-01-06T06:53:59,387   copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation
2024-01-06T06:53:59,389   copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled
2024-01-06T06:53:59,391   creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,392   copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,394   copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,396   copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,399   copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,401   copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,403   copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,405   copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,407   copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,410   copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,412   copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats
2024-01-06T06:53:59,414   copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,416   copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,418   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2024-01-06T06:53:59,419   creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,420   copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,423   copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,425   copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,427   copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,429   copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,431   copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,433   copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,436   copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,437   copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins
2024-01-06T06:53:59,439   copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports
2024-01-06T06:53:59,441   copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,443   copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,446   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-01-06T06:53:59,447   copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-01-06T06:53:59,451   creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2024-01-06T06:53:59,451   copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops
2024-01-06T06:53:59,453   copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/util
2024-01-06T06:53:59,455   copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,457   copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,460   copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,462   copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,465   copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,467   creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,469   copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,471   copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,472   copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,474   copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,476   copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/expressions
2024-01-06T06:53:59,478   copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,481   copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,483   copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,486   creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,487   copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,490   copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,492   copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,494   copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,496   copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,498   copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,500   copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,503   copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/actions
2024-01-06T06:53:59,506   creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2024-01-06T06:53:59,507   copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/filters
2024-01-06T06:53:59,509   copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,510   copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,513   creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,514   copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,516   copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,517   copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,519   copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,521   copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,523   copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp
2024-01-06T06:53:59,525   copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,527   copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,529   copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,531   copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,533   creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,534   copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,537   copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,539   copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,556   copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,559   copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,561   copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,564   copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,567   copying build/lib/galaxy/tools/parameters/history_query.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,569   copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,571   copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,574   copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,577   copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/parameters
2024-01-06T06:53:59,579   copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,581   copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,583   copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,585   creating build/bdist.linux-armv7l/wheel/galaxy/tools/search
2024-01-06T06:53:59,586   copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/search
2024-01-06T06:53:59,589   copying build/lib/galaxy/tools/test.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,592   copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,594   copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,596   copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,599   creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-01-06T06:53:59,600   copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-01-06T06:53:59,602   copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager
2024-01-06T06:53:59,604   copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,609   copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/galaxy/tools
2024-01-06T06:53:59,611   creating build/bdist.linux-armv7l/wheel/galaxy/webhooks
2024-01-06T06:53:59,612   copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/webhooks
2024-01-06T06:53:59,614   copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,616   copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,618   copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,621   copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,622   copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,624   copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,627   creating build/bdist.linux-armv7l/wheel/galaxy/forms
2024-01-06T06:53:59,628   copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2024-01-06T06:53:59,630   copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/forms
2024-01-06T06:53:59,632   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy
2024-01-06T06:53:59,633   running install_egg_info
2024-01-06T06:53:59,644   Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/galaxy_app-23.1.4-py3.11.egg-info
2024-01-06T06:53:59,656   running install_scripts
2024-01-06T06:53:59,685   creating build/bdist.linux-armv7l/wheel/galaxy_app-23.1.4.dist-info/WHEEL
2024-01-06T06:53:59,687   creating '/tmp/pip-wheel-wqiviagd/.tmp-8paoesi8/galaxy_app-23.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2024-01-06T06:53:59,690   adding 'galaxy/__init__.py'
2024-01-06T06:53:59,695   adding 'galaxy/app.py'
2024-01-06T06:53:59,697   adding 'galaxy/config_watchers.py'
2024-01-06T06:53:59,698   adding 'galaxy/di.py'
2024-01-06T06:53:59,700   adding 'galaxy/main.py'
2024-01-06T06:53:59,702   adding 'galaxy/main_config.py'
2024-01-06T06:53:59,703   adding 'galaxy/py.typed'
2024-01-06T06:53:59,706   adding 'galaxy/queue_worker.py'
2024-01-06T06:53:59,708   adding 'galaxy/queues.py'
2024-01-06T06:53:59,709   adding 'galaxy/structured_app.py'
2024-01-06T06:53:59,711   adding 'galaxy/actions/__init__.py'
2024-01-06T06:53:59,714   adding 'galaxy/actions/library.py'
2024-01-06T06:53:59,715   adding 'galaxy/app_unittest_utils/__init__.py'
2024-01-06T06:53:59,718   adding 'galaxy/app_unittest_utils/galaxy_mock.py'
2024-01-06T06:53:59,720   adding 'galaxy/app_unittest_utils/tools_support.py'
2024-01-06T06:53:59,722   adding 'galaxy/authnz/__init__.py'
2024-01-06T06:53:59,725   adding 'galaxy/authnz/custos_authnz.py'
2024-01-06T06:53:59,728   adding 'galaxy/authnz/managers.py'
2024-01-06T06:53:59,731   adding 'galaxy/authnz/psa_authnz.py'
2024-01-06T06:53:59,733   adding 'galaxy/authnz/util.py'
2024-01-06T06:53:59,735   adding 'galaxy/celery/__init__.py'
2024-01-06T06:53:59,737   adding 'galaxy/celery/_serialization.py'
2024-01-06T06:53:59,739   adding 'galaxy/celery/tasks.py'
2024-01-06T06:53:59,742   adding 'galaxy/dependencies/__init__.py'
2024-01-06T06:53:59,743   adding 'galaxy/dependencies/conditional-requirements.txt'
2024-01-06T06:53:59,745   adding 'galaxy/dependencies/dev-requirements.txt'
2024-01-06T06:53:59,747   adding 'galaxy/dependencies/lint-requirements.txt'
2024-01-06T06:53:59,748   adding 'galaxy/dependencies/pinned-lint-requirements.txt'
2024-01-06T06:53:59,750   adding 'galaxy/dependencies/pinned-requirements.txt'
2024-01-06T06:53:59,751   adding 'galaxy/dependencies/pinned-typecheck-requirements.txt'
2024-01-06T06:53:59,752   adding 'galaxy/dependencies/typecheck-requirements.txt'
2024-01-06T06:53:59,754   adding 'galaxy/dependencies/update.sh'
2024-01-06T06:53:59,755   adding 'galaxy/dependencies/update_lint_requirements.sh'
2024-01-06T06:53:59,757   adding 'galaxy/forms/__init__.py'
2024-01-06T06:53:59,759   adding 'galaxy/forms/forms.py'
2024-01-06T06:53:59,775   adding 'galaxy/jobs/__init__.py'
2024-01-06T06:53:59,778   adding 'galaxy/jobs/command_factory.py'
2024-01-06T06:53:59,785   adding 'galaxy/jobs/dynamic_tool_destination.py'
2024-01-06T06:53:59,793   adding 'galaxy/jobs/handler.py'
2024-01-06T06:53:59,794   adding 'galaxy/jobs/manager.py'
2024-01-06T06:53:59,797   adding 'galaxy/jobs/mapper.py'
2024-01-06T06:53:59,799   adding 'galaxy/jobs/rule_helper.py'
2024-01-06T06:53:59,800   adding 'galaxy/jobs/stock_rules.py'
2024-01-06T06:53:59,802   adding 'galaxy/jobs/rules/__init__.py'
2024-01-06T06:53:59,807   adding 'galaxy/jobs/runners/__init__.py'
2024-01-06T06:53:59,810   adding 'galaxy/jobs/runners/aws.py'
2024-01-06T06:53:59,813   adding 'galaxy/jobs/runners/chronos.py'
2024-01-06T06:53:59,815   adding 'galaxy/jobs/runners/cli.py'
2024-01-06T06:53:59,817   adding 'galaxy/jobs/runners/condor.py'
2024-01-06T06:53:59,820   adding 'galaxy/jobs/runners/drmaa.py'
2024-01-06T06:53:59,823   adding 'galaxy/jobs/runners/godocker.py'
2024-01-06T06:53:59,828   adding 'galaxy/jobs/runners/kubernetes.py'
2024-01-06T06:53:59,831   adding 'galaxy/jobs/runners/local.py'
2024-01-06T06:53:59,834   adding 'galaxy/jobs/runners/pbs.py'
2024-01-06T06:53:59,840   adding 'galaxy/jobs/runners/pulsar.py'
2024-01-06T06:53:59,843   adding 'galaxy/jobs/runners/slurm.py'
2024-01-06T06:53:59,844   adding 'galaxy/jobs/runners/state_handler_factory.py'
2024-01-06T06:53:59,846   adding 'galaxy/jobs/runners/tasks.py'
2024-01-06T06:53:59,851   adding 'galaxy/jobs/runners/univa.py'
2024-01-06T06:53:59,852   adding 'galaxy/jobs/runners/state_handlers/__init__.py'
2024-01-06T06:53:59,854   adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py'
2024-01-06T06:53:59,856   adding 'galaxy/jobs/runners/state_handlers/resubmit.py'
2024-01-06T06:53:59,858   adding 'galaxy/jobs/runners/util/__init__.py'
2024-01-06T06:53:59,859   adding 'galaxy/jobs/runners/util/env.py'
2024-01-06T06:53:59,861   adding 'galaxy/jobs/runners/util/external.py'
2024-01-06T06:53:59,862   adding 'galaxy/jobs/runners/util/fork_safe_write.py'
2024-01-06T06:53:59,864   adding 'galaxy/jobs/runners/util/kill.py'
2024-01-06T06:53:59,865   adding 'galaxy/jobs/runners/util/process_groups.py'
2024-01-06T06:53:59,867   adding 'galaxy/jobs/runners/util/pykube_util.py'
2024-01-06T06:53:59,869   adding 'galaxy/jobs/runners/util/sudo.py'
2024-01-06T06:53:59,871   adding 'galaxy/jobs/runners/util/cli/__init__.py'
2024-01-06T06:53:59,872   adding 'galaxy/jobs/runners/util/cli/factory.py'
2024-01-06T06:53:59,874   adding 'galaxy/jobs/runners/util/cli/job/__init__.py'
2024-01-06T06:53:59,876   adding 'galaxy/jobs/runners/util/cli/job/lsf.py'
2024-01-06T06:53:59,877   adding 'galaxy/jobs/runners/util/cli/job/pbs.py'
2024-01-06T06:53:59,879   adding 'galaxy/jobs/runners/util/cli/job/slurm.py'
2024-01-06T06:53:59,881   adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py'
2024-01-06T06:53:59,883   adding 'galaxy/jobs/runners/util/cli/job/torque.py'
2024-01-06T06:53:59,885   adding 'galaxy/jobs/runners/util/cli/shell/__init__.py'
2024-01-06T06:53:59,886   adding 'galaxy/jobs/runners/util/cli/shell/local.py'
2024-01-06T06:53:59,888   adding 'galaxy/jobs/runners/util/cli/shell/rsh.py'
2024-01-06T06:53:59,890   adding 'galaxy/jobs/runners/util/condor/__init__.py'
2024-01-06T06:53:59,892   adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh'
2024-01-06T06:53:59,894   adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh'
2024-01-06T06:53:59,895   adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh'
2024-01-06T06:53:59,897   adding 'galaxy/jobs/runners/util/job_script/__init__.py'
2024-01-06T06:53:59,898   adding 'galaxy/jobs/splitters/__init__.py'
2024-01-06T06:53:59,900   adding 'galaxy/jobs/splitters/basic.py'
2024-01-06T06:53:59,901   adding 'galaxy/jobs/splitters/multi.py'
2024-01-06T06:53:59,904   adding 'galaxy/managers/__init__.py'
2024-01-06T06:53:59,906   adding 'galaxy/managers/annotatable.py'
2024-01-06T06:53:59,907   adding 'galaxy/managers/api_keys.py'
2024-01-06T06:53:59,915   adding 'galaxy/managers/base.py'
2024-01-06T06:53:59,916   adding 'galaxy/managers/citations.py'
2024-01-06T06:53:59,919   adding 'galaxy/managers/cloud.py'
2024-01-06T06:53:59,921   adding 'galaxy/managers/cloudauthzs.py'
2024-01-06T06:53:59,926   adding 'galaxy/managers/collections.py'
2024-01-06T06:53:59,928   adding 'galaxy/managers/collections_util.py'
2024-01-06T06:53:59,930   adding 'galaxy/managers/configuration.py'
2024-01-06T06:53:59,932   adding 'galaxy/managers/context.py'
2024-01-06T06:53:59,937   adding 'galaxy/managers/datasets.py'
2024-01-06T06:53:59,939   adding 'galaxy/managers/datatypes.py'
2024-01-06T06:53:59,940   adding 'galaxy/managers/deletable.py'
2024-01-06T06:53:59,942   adding 'galaxy/managers/display_applications.py'
2024-01-06T06:53:59,943   adding 'galaxy/managers/executables.py'
2024-01-06T06:53:59,944   adding 'galaxy/managers/export_tracker.py'
2024-01-06T06:53:59,947   adding 'galaxy/managers/folders.py'
2024-01-06T06:53:59,949   adding 'galaxy/managers/genomes.py'
2024-01-06T06:53:59,950   adding 'galaxy/managers/group_roles.py'
2024-01-06T06:53:59,952   adding 'galaxy/managers/group_users.py'
2024-01-06T06:53:59,953   adding 'galaxy/managers/groups.py'
2024-01-06T06:53:59,957   adding 'galaxy/managers/hdas.py'
2024-01-06T06:53:59,959   adding 'galaxy/managers/hdcas.py'
2024-01-06T06:53:59,964   adding 'galaxy/managers/histories.py'
2024-01-06T06:53:59,967   adding 'galaxy/managers/history_contents.py'
2024-01-06T06:53:59,970   adding 'galaxy/managers/interactivetool.py'
2024-01-06T06:53:59,971   adding 'galaxy/managers/job_connections.py'
2024-01-06T06:53:59,976   adding 'galaxy/managers/jobs.py'
2024-01-06T06:53:59,978   adding 'galaxy/managers/lddas.py'
2024-01-06T06:53:59,980   adding 'galaxy/managers/libraries.py'
2024-01-06T06:53:59,982   adding 'galaxy/managers/library_datasets.py'
2024-01-06T06:53:59,994   adding 'galaxy/managers/licenses.json'
2024-01-06T06:53:59,997   adding 'galaxy/managers/licenses.py'
2024-01-06T06:53:59,998   adding 'galaxy/managers/markdown_export_base.css'
2024-01-06T06:53:59,999   adding 'galaxy/managers/markdown_parse.py'
2024-01-06T06:54:00,003   adding 'galaxy/managers/markdown_util.py'
2024-01-06T06:54:00,005   adding 'galaxy/managers/metrics.py'
2024-01-06T06:54:00,007   adding 'galaxy/managers/model_stores.py'
2024-01-06T06:54:00,009   adding 'galaxy/managers/notification.py'
2024-01-06T06:54:00,012   adding 'galaxy/managers/pages.py'
2024-01-06T06:54:00,015   adding 'galaxy/managers/quotas.py'
2024-01-06T06:54:00,016   adding 'galaxy/managers/ratable.py'
2024-01-06T06:54:00,018   adding 'galaxy/managers/rbac_secured.py'
2024-01-06T06:54:00,019   adding 'galaxy/managers/remote_files.py'
2024-01-06T06:54:00,021   adding 'galaxy/managers/roles.py'
2024-01-06T06:54:00,022   adding 'galaxy/managers/secured.py'
2024-01-06T06:54:00,023   adding 'galaxy/managers/session.py'
2024-01-06T06:54:00,026   adding 'galaxy/managers/sharable.py'
2024-01-06T06:54:00,028   adding 'galaxy/managers/taggable.py'
2024-01-06T06:54:00,029   adding 'galaxy/managers/tags.py'
2024-01-06T06:54:00,030   adding 'galaxy/managers/tasks.py'
2024-01-06T06:54:00,032   adding 'galaxy/managers/tool_data.py'
2024-01-06T06:54:00,034   adding 'galaxy/managers/tools.py'
2024-01-06T06:54:00,038   adding 'galaxy/managers/users.py'
2024-01-06T06:54:00,039   adding 'galaxy/managers/visualizations.py'
2024-01-06T06:54:00,050   adding 'galaxy/managers/workflows.py'
2024-01-06T06:54:00,052   adding 'galaxy/tool_shed/__init__.py'
2024-01-06T06:54:00,053   adding 'galaxy/tool_shed/cache.py'
2024-01-06T06:54:00,054   adding 'galaxy/tool_shed/repository_type.py'
2024-01-06T06:54:00,056   adding 'galaxy/tool_shed/galaxy_install/__init__.py'
2024-01-06T06:54:00,061   adding 'galaxy/tool_shed/galaxy_install/install_manager.py'
2024-01-06T06:54:00,066   adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py'
2024-01-06T06:54:00,068   adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py'
2024-01-06T06:54:00,070   adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py'
2024-01-06T06:54:00,072   adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py'
2024-01-06T06:54:00,073   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py'
2024-01-06T06:54:00,077   adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py'
2024-01-06T06:54:00,079   adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py'
2024-01-06T06:54:00,081   adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py'
2024-01-06T06:54:00,084   adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py'
2024-01-06T06:54:00,086   adding 'galaxy/tool_shed/metadata/__init__.py'
2024-01-06T06:54:00,092   adding 'galaxy/tool_shed/metadata/metadata_generator.py'
2024-01-06T06:54:00,094   adding 'galaxy/tool_shed/tools/__init__.py'
2024-01-06T06:54:00,095   adding 'galaxy/tool_shed/tools/data_table_manager.py'
2024-01-06T06:54:00,097   adding 'galaxy/tool_shed/tools/tool_validator.py'
2024-01-06T06:54:00,099   adding 'galaxy/tool_shed/util/__init__.py'
2024-01-06T06:54:00,100   adding 'galaxy/tool_shed/util/basic_util.py'
2024-01-06T06:54:00,101   adding 'galaxy/tool_shed/util/container_util.py'
2024-01-06T06:54:00,104   adding 'galaxy/tool_shed/util/dependency_display.py'
2024-01-06T06:54:00,106   adding 'galaxy/tool_shed/util/hg_util.py'
2024-01-06T06:54:00,107   adding 'galaxy/tool_shed/util/metadata_util.py'
2024-01-06T06:54:00,111   adding 'galaxy/tool_shed/util/repository_util.py'
2024-01-06T06:54:00,113   adding 'galaxy/tool_shed/util/shed_util_common.py'
2024-01-06T06:54:00,115   adding 'galaxy/tool_shed/util/tool_dependency_util.py'
2024-01-06T06:54:00,117   adding 'galaxy/tool_shed/util/tool_util.py'
2024-01-06T06:54:00,121   adding 'galaxy/tool_shed/util/utility_container_manager.py'
2024-01-06T06:54:00,143   adding 'galaxy/tools/__init__.py'
2024-01-06T06:54:00,145   adding 'galaxy/tools/apply_rules.xml'
2024-01-06T06:54:00,146   adding 'galaxy/tools/biotools.py'
2024-01-06T06:54:00,148   adding 'galaxy/tools/build_list.xml'
2024-01-06T06:54:00,149   adding 'galaxy/tools/build_list_1.2.0.xml'
2024-01-06T06:54:00,151   adding 'galaxy/tools/cache.py'
2024-01-06T06:54:00,154   adding 'galaxy/tools/data_fetch.py'
2024-01-06T06:54:00,156   adding 'galaxy/tools/data_fetch.xml'
2024-01-06T06:54:00,157   adding 'galaxy/tools/duplicate_file_to_collection.xml'
2024-01-06T06:54:00,159   adding 'galaxy/tools/errors.py'
2024-01-06T06:54:00,164   adding 'galaxy/tools/evaluation.py'
2024-01-06T06:54:00,165   adding 'galaxy/tools/exception_handling.py'
2024-01-06T06:54:00,169   adding 'galaxy/tools/execute.py'
2024-01-06T06:54:00,170   adding 'galaxy/tools/extract_dataset.xml'
2024-01-06T06:54:00,172   adding 'galaxy/tools/filter_empty_collection.xml'
2024-01-06T06:54:00,173   adding 'galaxy/tools/filter_failed_collection.xml'
2024-01-06T06:54:00,174   adding 'galaxy/tools/filter_from_file.xml'
2024-01-06T06:54:00,176   adding 'galaxy/tools/flatten_collection.xml'
2024-01-06T06:54:00,178   adding 'galaxy/tools/merge_collection.xml'
2024-01-06T06:54:00,180   adding 'galaxy/tools/recommendations.py'
2024-01-06T06:54:00,182   adding 'galaxy/tools/relabel_from_file.xml'
2024-01-06T06:54:00,183   adding 'galaxy/tools/remote_tool_eval.py'
2024-01-06T06:54:00,184   adding 'galaxy/tools/repositories.py'
2024-01-06T06:54:00,186   adding 'galaxy/tools/sort_collection_list.xml'
2024-01-06T06:54:00,187   adding 'galaxy/tools/special_tools.py'
2024-01-06T06:54:00,188   adding 'galaxy/tools/tag_collection_from_file.xml'
2024-01-06T06:54:00,191   adding 'galaxy/tools/test.py'
2024-01-06T06:54:00,192   adding 'galaxy/tools/unzip_collection.xml'
2024-01-06T06:54:00,195   adding 'galaxy/tools/wrappers.py'
2024-01-06T06:54:00,197   adding 'galaxy/tools/zip_collection.xml'
2024-01-06T06:54:00,204   adding 'galaxy/tools/actions/__init__.py'
2024-01-06T06:54:00,206   adding 'galaxy/tools/actions/data_manager.py'
2024-01-06T06:54:00,207   adding 'galaxy/tools/actions/data_source.py'
2024-01-06T06:54:00,209   adding 'galaxy/tools/actions/history_imp_exp.py'
2024-01-06T06:54:00,210   adding 'galaxy/tools/actions/metadata.py'
2024-01-06T06:54:00,212   adding 'galaxy/tools/actions/model_operations.py'
2024-01-06T06:54:00,213   adding 'galaxy/tools/actions/upload.py'
2024-01-06T06:54:00,216   adding 'galaxy/tools/actions/upload_common.py'
2024-01-06T06:54:00,217   adding 'galaxy/tools/bundled/__init__.py'
2024-01-06T06:54:00,219   adding 'galaxy/tools/bundled/data_export/export_remote.py'
2024-01-06T06:54:00,221   adding 'galaxy/tools/bundled/data_export/export_remote.xml'
2024-01-06T06:54:00,222   adding 'galaxy/tools/bundled/data_export/send.py'
2024-01-06T06:54:00,223   adding 'galaxy/tools/bundled/data_export/send.xml'
2024-01-06T06:54:00,225   adding 'galaxy/tools/bundled/data_source/__init__.py'
2024-01-06T06:54:00,226   adding 'galaxy/tools/bundled/data_source/access_libraries.xml'
2024-01-06T06:54:00,228   adding 'galaxy/tools/bundled/data_source/biomart.xml'
2024-01-06T06:54:00,229   adding 'galaxy/tools/bundled/data_source/biomart_test.xml'
2024-01-06T06:54:00,230   adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml'
2024-01-06T06:54:00,232   adding 'galaxy/tools/bundled/data_source/data_source.py'
2024-01-06T06:54:00,233   adding 'galaxy/tools/bundled/data_source/ebi_sra.xml'
2024-01-06T06:54:00,234   adding 'galaxy/tools/bundled/data_source/eupathdb.xml'
2024-01-06T06:54:00,236   adding 'galaxy/tools/bundled/data_source/fly_modencode.xml'
2024-01-06T06:54:00,237   adding 'galaxy/tools/bundled/data_source/flymine.xml'
2024-01-06T06:54:00,238   adding 'galaxy/tools/bundled/data_source/flymine_test.xml'
2024-01-06T06:54:00,239   adding 'galaxy/tools/bundled/data_source/genbank.py'
2024-01-06T06:54:00,241   adding 'galaxy/tools/bundled/data_source/genbank.xml'
2024-01-06T06:54:00,242   adding 'galaxy/tools/bundled/data_source/gramene_mart.xml'
2024-01-06T06:54:00,243   adding 'galaxy/tools/bundled/data_source/hapmapmart.xml'
2024-01-06T06:54:00,244   adding 'galaxy/tools/bundled/data_source/hbvar.xml'
2024-01-06T06:54:00,246   adding 'galaxy/tools/bundled/data_source/import.py'
2024-01-06T06:54:00,247   adding 'galaxy/tools/bundled/data_source/import.xml'
2024-01-06T06:54:00,248   adding 'galaxy/tools/bundled/data_source/intermine.xml'
2024-01-06T06:54:00,249   adding 'galaxy/tools/bundled/data_source/metabolicmine.xml'
2024-01-06T06:54:00,251   adding 'galaxy/tools/bundled/data_source/microbial_import.py'
2024-01-06T06:54:00,252   adding 'galaxy/tools/bundled/data_source/microbial_import.xml'
2024-01-06T06:54:00,254   adding 'galaxy/tools/bundled/data_source/microbial_import_code.py'
2024-01-06T06:54:00,255   adding 'galaxy/tools/bundled/data_source/modmine.xml'
2024-01-06T06:54:00,256   adding 'galaxy/tools/bundled/data_source/mousemine.xml'
2024-01-06T06:54:00,258   adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml'
2024-01-06T06:54:00,259   adding 'galaxy/tools/bundled/data_source/ratmine.xml'
2024-01-06T06:54:00,260   adding 'galaxy/tools/bundled/data_source/sra.xml'
2024-01-06T06:54:00,261   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml'
2024-01-06T06:54:00,263   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml'
2024-01-06T06:54:00,264   adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml'
2024-01-06T06:54:00,266   adding 'galaxy/tools/bundled/data_source/upload.py'
2024-01-06T06:54:00,268   adding 'galaxy/tools/bundled/data_source/upload.xml'
2024-01-06T06:54:00,270   adding 'galaxy/tools/bundled/data_source/worm_modencode.xml'
2024-01-06T06:54:00,271   adding 'galaxy/tools/bundled/data_source/wormbase.xml'
2024-01-06T06:54:00,272   adding 'galaxy/tools/bundled/data_source/wormbase_test.xml'
2024-01-06T06:54:00,273   adding 'galaxy/tools/bundled/data_source/yeastmine.xml'
2024-01-06T06:54:00,274   adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml'
2024-01-06T06:54:00,276   adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml'
2024-01-06T06:54:00,277   adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml'
2024-01-06T06:54:00,279   adding 'galaxy/tools/bundled/expression_tools/pick_value.xml'
2024-01-06T06:54:00,280   adding 'galaxy/tools/bundled/extract/__init__.py'
2024-01-06T06:54:00,282   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py'
2024-01-06T06:54:00,284   adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml'
2024-01-06T06:54:00,285   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py'
2024-01-06T06:54:00,287   adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml'
2024-01-06T06:54:00,289   adding 'galaxy/tools/bundled/filters/CreateInterval.pl'
2024-01-06T06:54:00,291   adding 'galaxy/tools/bundled/filters/CreateInterval.xml'
2024-01-06T06:54:00,292   adding 'galaxy/tools/bundled/filters/__init__.py'
2024-01-06T06:54:00,293   adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py'
2024-01-06T06:54:00,295   adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml'
2024-01-06T06:54:00,296   adding 'galaxy/tools/bundled/filters/axt_to_fasta.py'
2024-01-06T06:54:00,297   adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml'
2024-01-06T06:54:00,299   adding 'galaxy/tools/bundled/filters/axt_to_lav.py'
2024-01-06T06:54:00,300   adding 'galaxy/tools/bundled/filters/axt_to_lav.xml'
2024-01-06T06:54:00,301   adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py'
2024-01-06T06:54:00,303   adding 'galaxy/tools/bundled/filters/bed2gff.xml'
2024-01-06T06:54:00,304   adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml'
2024-01-06T06:54:00,305   adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py'
2024-01-06T06:54:00,307   adding 'galaxy/tools/bundled/filters/catWrapper.py'
2024-01-06T06:54:00,308   adding 'galaxy/tools/bundled/filters/catWrapper.xml'
2024-01-06T06:54:00,309   adding 'galaxy/tools/bundled/filters/changeCase.pl'
2024-01-06T06:54:00,310   adding 'galaxy/tools/bundled/filters/changeCase.xml'
2024-01-06T06:54:00,312   adding 'galaxy/tools/bundled/filters/commWrapper.pl'
2024-01-06T06:54:00,313   adding 'galaxy/tools/bundled/filters/commWrapper.xml'
2024-01-06T06:54:00,314   adding 'galaxy/tools/bundled/filters/compare.xml'
2024-01-06T06:54:00,316   adding 'galaxy/tools/bundled/filters/condense_characters.pl'
2024-01-06T06:54:00,317   adding 'galaxy/tools/bundled/filters/condense_characters.xml'
2024-01-06T06:54:00,318   adding 'galaxy/tools/bundled/filters/convert_characters.py'
2024-01-06T06:54:00,319   adding 'galaxy/tools/bundled/filters/convert_characters.xml'
2024-01-06T06:54:00,321   adding 'galaxy/tools/bundled/filters/cutWrapper.pl'
2024-01-06T06:54:00,322   adding 'galaxy/tools/bundled/filters/cutWrapper.xml'
2024-01-06T06:54:00,324   adding 'galaxy/tools/bundled/filters/fileGrep.xml'
2024-01-06T06:54:00,325   adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl'
2024-01-06T06:54:00,326   adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml'
2024-01-06T06:54:00,328   adding 'galaxy/tools/bundled/filters/gff2bed.xml'
2024-01-06T06:54:00,329   adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py'
2024-01-06T06:54:00,331   adding 'galaxy/tools/bundled/filters/grep.py'
2024-01-06T06:54:00,332   adding 'galaxy/tools/bundled/filters/grep.xml'
2024-01-06T06:54:00,334   adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml'
2024-01-06T06:54:00,335   adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml'
2024-01-06T06:54:00,336   adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py'
2024-01-06T06:54:00,338   adding 'galaxy/tools/bundled/filters/headWrapper.xml'
2024-01-06T06:54:00,340   adding 'galaxy/tools/bundled/filters/join.py'
2024-01-06T06:54:00,341   adding 'galaxy/tools/bundled/filters/joinWrapper.py'
2024-01-06T06:54:00,343   adding 'galaxy/tools/bundled/filters/joiner.xml'
2024-01-06T06:54:00,344   adding 'galaxy/tools/bundled/filters/joiner2.xml'
2024-01-06T06:54:00,345   adding 'galaxy/tools/bundled/filters/lav_to_bed.py'
2024-01-06T06:54:00,346   adding 'galaxy/tools/bundled/filters/lav_to_bed.xml'
2024-01-06T06:54:00,347   adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py'
2024-01-06T06:54:00,348   adding 'galaxy/tools/bundled/filters/mergeCols.py'
2024-01-06T06:54:00,350   adding 'galaxy/tools/bundled/filters/mergeCols.xml'
2024-01-06T06:54:00,351   adding 'galaxy/tools/bundled/filters/pasteWrapper.pl'
2024-01-06T06:54:00,352   adding 'galaxy/tools/bundled/filters/pasteWrapper.xml'
2024-01-06T06:54:00,353   adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py'
2024-01-06T06:54:00,355   adding 'galaxy/tools/bundled/filters/randomlines.py'
2024-01-06T06:54:00,356   adding 'galaxy/tools/bundled/filters/randomlines.xml'
2024-01-06T06:54:00,357   adding 'galaxy/tools/bundled/filters/remove_beginning.pl'
2024-01-06T06:54:00,358   adding 'galaxy/tools/bundled/filters/remove_beginning.xml'
2024-01-06T06:54:00,360   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py'
2024-01-06T06:54:00,361   adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml'
2024-01-06T06:54:00,367   adding 'galaxy/tools/bundled/filters/sff_extract.py'
2024-01-06T06:54:00,368   adding 'galaxy/tools/bundled/filters/sff_extractor.xml'
2024-01-06T06:54:00,370   adding 'galaxy/tools/bundled/filters/sorter.py'
2024-01-06T06:54:00,371   adding 'galaxy/tools/bundled/filters/sorter.xml'
2024-01-06T06:54:00,373   adding 'galaxy/tools/bundled/filters/tailWrapper.xml'
2024-01-06T06:54:00,374   adding 'galaxy/tools/bundled/filters/trimmer.py'
2024-01-06T06:54:00,375   adding 'galaxy/tools/bundled/filters/trimmer.xml'
2024-01-06T06:54:00,377   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py'
2024-01-06T06:54:00,378   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml'
2024-01-06T06:54:00,380   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py'
2024-01-06T06:54:00,381   adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml'
2024-01-06T06:54:00,383   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py'
2024-01-06T06:54:00,384   adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml'
2024-01-06T06:54:00,385   adding 'galaxy/tools/bundled/filters/uniq.py'
2024-01-06T06:54:00,387   adding 'galaxy/tools/bundled/filters/uniq.xml'
2024-01-06T06:54:00,388   adding 'galaxy/tools/bundled/filters/wc_gnu.xml'
2024-01-06T06:54:00,390   adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml'
2024-01-06T06:54:00,391   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py'
2024-01-06T06:54:00,392   adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml'
2024-01-06T06:54:00,394   adding 'galaxy/tools/bundled/filters/gff/__init__.py'
2024-01-06T06:54:00,395   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py'
2024-01-06T06:54:00,397   adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml'
2024-01-06T06:54:00,399   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py'
2024-01-06T06:54:00,400   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml'
2024-01-06T06:54:00,402   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py'
2024-01-06T06:54:00,403   adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml'
2024-01-06T06:54:00,404   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py'
2024-01-06T06:54:00,406   adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml'
2024-01-06T06:54:00,408   adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb'
2024-01-06T06:54:00,409   adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml'
2024-01-06T06:54:00,411   adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml'
2024-01-06T06:54:00,412   adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene.xml'
2024-01-06T06:54:00,413   adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml'
2024-01-06T06:54:00,414   adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml'
2024-01-06T06:54:00,416   adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml'
2024-01-06T06:54:00,417   adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml'
2024-01-06T06:54:00,418   adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml'
2024-01-06T06:54:00,420   adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml'
2024-01-06T06:54:00,421   adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml'
2024-01-06T06:54:00,423   adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml'
2024-01-06T06:54:00,425   adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml'
2024-01-06T06:54:00,426   adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml'
2024-01-06T06:54:00,428   adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml'
2024-01-06T06:54:00,430   adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml'
2024-01-06T06:54:00,431   adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml'
2024-01-06T06:54:00,432   adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml'
2024-01-06T06:54:00,434   adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml'
2024-01-06T06:54:00,435   adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml'
2024-01-06T06:54:00,436   adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml'
2024-01-06T06:54:00,437   adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml'
2024-01-06T06:54:00,439   adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml'
2024-01-06T06:54:00,440   adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml'
2024-01-06T06:54:00,442   adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml'
2024-01-06T06:54:00,443   adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml'
2024-01-06T06:54:00,444   adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml'
2024-01-06T06:54:00,446   adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml'
2024-01-06T06:54:00,447   adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml'
2024-01-06T06:54:00,448   adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml'
2024-01-06T06:54:00,449   adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml'
2024-01-06T06:54:00,452   adding 'galaxy/tools/bundled/interactive/simtext_app.R'
2024-01-06T06:54:00,454   adding 'galaxy/tools/bundled/maf/__init__.py'
2024-01-06T06:54:00,456   adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml'
2024-01-06T06:54:00,458   adding 'galaxy/tools/bundled/maf/interval2maf.py'
2024-01-06T06:54:00,460   adding 'galaxy/tools/bundled/maf/interval2maf.xml'
2024-01-06T06:54:00,461   adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml'
2024-01-06T06:54:00,463   adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py'
2024-01-06T06:54:00,464   adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml'
2024-01-06T06:54:00,465   adding 'galaxy/tools/bundled/maf/macros.xml'
2024-01-06T06:54:00,467   adding 'galaxy/tools/bundled/maf/maf_by_block_number.py'
2024-01-06T06:54:00,468   adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml'
2024-01-06T06:54:00,469   adding 'galaxy/tools/bundled/maf/maf_filter.py'
2024-01-06T06:54:00,471   adding 'galaxy/tools/bundled/maf/maf_filter.xml'
2024-01-06T06:54:00,472   adding 'galaxy/tools/bundled/maf/maf_limit_size.py'
2024-01-06T06:54:00,474   adding 'galaxy/tools/bundled/maf/maf_limit_size.xml'
2024-01-06T06:54:00,475   adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py'
2024-01-06T06:54:00,476   adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml'
2024-01-06T06:54:00,477   adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py'
2024-01-06T06:54:00,479   adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml'
2024-01-06T06:54:00,480   adding 'galaxy/tools/bundled/maf/maf_split_by_species.py'
2024-01-06T06:54:00,481   adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml'
2024-01-06T06:54:00,483   adding 'galaxy/tools/bundled/maf/maf_stats.py'
2024-01-06T06:54:00,484   adding 'galaxy/tools/bundled/maf/maf_stats.xml'
2024-01-06T06:54:00,485   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py'
2024-01-06T06:54:00,487   adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml'
2024-01-06T06:54:00,488   adding 'galaxy/tools/bundled/maf/maf_to_bed.py'
2024-01-06T06:54:00,489   adding 'galaxy/tools/bundled/maf/maf_to_bed.xml'
2024-01-06T06:54:00,491   adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py'
2024-01-06T06:54:00,492   adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml'
2024-01-06T06:54:00,494   adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py'
2024-01-06T06:54:00,495   adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py'
2024-01-06T06:54:00,496   adding 'galaxy/tools/bundled/maf/maf_to_interval.py'
2024-01-06T06:54:00,498   adding 'galaxy/tools/bundled/maf/maf_to_interval.xml'
2024-01-06T06:54:00,499   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py'
2024-01-06T06:54:00,501   adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml'
2024-01-06T06:54:00,502   adding 'galaxy/tools/bundled/meme/__init__.py'
2024-01-06T06:54:00,504   adding 'galaxy/tools/bundled/meme/fimo.xml'
2024-01-06T06:54:00,505   adding 'galaxy/tools/bundled/meme/fimo_wrapper.py'
2024-01-06T06:54:00,507   adding 'galaxy/tools/bundled/meme/meme.xml'
2024-01-06T06:54:00,509   adding 'galaxy/tools/bundled/metag_tools/__init__.py'
2024-01-06T06:54:00,510   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py'
2024-01-06T06:54:00,512   adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml'
2024-01-06T06:54:00,513   adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py'
2024-01-06T06:54:00,515   adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml'
2024-01-06T06:54:00,518   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py'
2024-01-06T06:54:00,520   adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml'
2024-01-06T06:54:00,522   adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl'
2024-01-06T06:54:00,524   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py'
2024-01-06T06:54:00,525   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml'
2024-01-06T06:54:00,527   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py'
2024-01-06T06:54:00,528   adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml'
2024-01-06T06:54:00,530   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py'
2024-01-06T06:54:00,531   adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml'
2024-01-06T06:54:00,533   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py'
2024-01-06T06:54:00,534   adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml'
2024-01-06T06:54:00,536   adding 'galaxy/tools/bundled/ngs_simulation/__init__.py'
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2024-01-06T06:54:00,575   adding 'galaxy/tools/bundled/phenotype_association/sift.xml'
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2024-01-06T06:54:00,581   adding 'galaxy/tools/bundled/plotting/boxplot.xml'
2024-01-06T06:54:00,583   adding 'galaxy/tools/bundled/solid_tools/__init__.py'
2024-01-06T06:54:00,585   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py'
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2024-01-06T06:54:00,588   adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py'
2024-01-06T06:54:00,589   adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh'
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2024-01-06T06:54:00,595   adding 'galaxy/tools/bundled/sr_assembly/__init__.py'
2024-01-06T06:54:00,597   adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml'
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2024-01-06T06:54:00,656   adding 'galaxy/tools/expressions/__init__.py'
2024-01-06T06:54:00,657   adding 'galaxy/tools/expressions/cwlNodeEngine.js'
2024-01-06T06:54:00,658   adding 'galaxy/tools/expressions/evaluation.py'
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2024-01-06T06:54:00,662   adding 'galaxy/tools/filters/__init__.py'
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2024-01-06T06:54:00,669   adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml'
2024-01-06T06:54:00,670   adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py'
2024-01-06T06:54:00,674   adding 'galaxy/tools/parameters/__init__.py'
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2024-01-06T06:54:00,689   adding 'galaxy/tools/parameters/dataset_matcher.py'
2024-01-06T06:54:00,694   adding 'galaxy/tools/parameters/dynamic_options.py'
2024-01-06T06:54:00,698   adding 'galaxy/tools/parameters/grouping.py'
2024-01-06T06:54:00,700   adding 'galaxy/tools/parameters/history_query.py'
2024-01-06T06:54:00,701   adding 'galaxy/tools/parameters/input_translation.py'
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2024-01-06T06:54:00,710   adding 'galaxy/tools/parameters/wrapped.py'
2024-01-06T06:54:00,712   adding 'galaxy/tools/parameters/wrapped_json.py'
2024-01-06T06:54:00,715   adding 'galaxy/tools/search/__init__.py'
2024-01-06T06:54:00,716   adding 'galaxy/tools/util/__init__.py'
2024-01-06T06:54:00,720   adding 'galaxy/tools/util/maf_utilities.py'
2024-01-06T06:54:00,722   adding 'galaxy/tools/util/galaxyops/__init__.py'
2024-01-06T06:54:00,724   adding 'galaxy/visualization/__init__.py'
2024-01-06T06:54:00,726   adding 'galaxy/visualization/genomes.py'
2024-01-06T06:54:00,728   adding 'galaxy/visualization/data_providers/__init__.py'
2024-01-06T06:54:00,730   adding 'galaxy/visualization/data_providers/basic.py'
2024-01-06T06:54:00,731   adding 'galaxy/visualization/data_providers/cigar.py'
2024-01-06T06:54:00,738   adding 'galaxy/visualization/data_providers/genome.py'
2024-01-06T06:54:00,741   adding 'galaxy/visualization/data_providers/registry.py'
2024-01-06T06:54:00,743   adding 'galaxy/visualization/data_providers/phyloviz/__init__.py'
2024-01-06T06:54:00,744   adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py'
2024-01-06T06:54:00,746   adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py'
2024-01-06T06:54:00,747   adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py'
2024-01-06T06:54:00,749   adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py'
2024-01-06T06:54:00,750   adding 'galaxy/visualization/genome/__init__.py'
2024-01-06T06:54:00,752   adding 'galaxy/visualization/plugins/__init__.py'
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2024-01-06T06:54:00,762   adding 'galaxy/visualization/plugins/utils.py'
2024-01-06T06:54:00,764   adding 'galaxy/visualization/tracks/__init__.py'
2024-01-06T06:54:00,765   adding 'galaxy/webhooks/__init__.py'
2024-01-06T06:54:00,767   adding 'galaxy/work/__init__.py'
2024-01-06T06:54:00,768   adding 'galaxy/work/context.py'
2024-01-06T06:54:00,770   adding 'galaxy/workflow/__init__.py'
2024-01-06T06:54:00,772   adding 'galaxy/workflow/extract.py'
2024-01-06T06:54:00,786   adding 'galaxy/workflow/modules.py'
2024-01-06T06:54:00,788   adding 'galaxy/workflow/render.py'
2024-01-06T06:54:00,792   adding 'galaxy/workflow/run.py'
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2024-01-06T06:54:00,798   adding 'galaxy/workflow/scheduling_manager.py'
2024-01-06T06:54:00,800   adding 'galaxy/workflow/steps.py'
2024-01-06T06:54:00,801   adding 'galaxy/workflow/trs_proxy.py'
2024-01-06T06:54:00,803   adding 'galaxy/workflow/refactor/__init__.py'
2024-01-06T06:54:00,806   adding 'galaxy/workflow/refactor/execute.py'
2024-01-06T06:54:00,808   adding 'galaxy/workflow/refactor/schema.py'
2024-01-06T06:54:00,810   adding 'galaxy/workflow/reports/__init__.py'
2024-01-06T06:54:00,811   adding 'galaxy/workflow/reports/generators/__init__.py'
2024-01-06T06:54:00,813   adding 'galaxy/workflow/reports/generators/markdown.py'
2024-01-06T06:54:00,815   adding 'galaxy/workflow/resources/__init__.py'
2024-01-06T06:54:00,816   adding 'galaxy/workflow/resources/example.py.sample'
2024-01-06T06:54:00,818   adding 'galaxy/workflow/schedulers/__init__.py'
2024-01-06T06:54:00,819   adding 'galaxy/workflow/schedulers/core.py'
2024-01-06T06:54:00,821   adding 'galaxy_ext/__init__.py'
2024-01-06T06:54:00,822   adding 'galaxy_ext/py.typed'
2024-01-06T06:54:00,824   adding 'galaxy_ext/container_monitor/__init__.py'
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2024-01-06T06:54:00,827   adding 'galaxy_ext/expressions/__init__.py'
2024-01-06T06:54:00,828   adding 'galaxy_ext/expressions/handle_job.py'
2024-01-06T06:54:00,830   adding 'galaxy_ext/metadata/__init__.py'
2024-01-06T06:54:00,831   adding 'galaxy_ext/metadata/set_metadata.py'
2024-01-06T06:54:00,832   adding 'tool_shed_client/__init__.py'
2024-01-06T06:54:00,835   adding 'tool_shed_client/schema/__init__.py'
2024-01-06T06:54:00,837   adding 'galaxy_app-23.1.4.dist-info/LICENSE'
2024-01-06T06:54:00,840   adding 'galaxy_app-23.1.4.dist-info/METADATA'
2024-01-06T06:54:00,842   adding 'galaxy_app-23.1.4.dist-info/WHEEL'
2024-01-06T06:54:00,843   adding 'galaxy_app-23.1.4.dist-info/entry_points.txt'
2024-01-06T06:54:00,843   adding 'galaxy_app-23.1.4.dist-info/top_level.txt'
2024-01-06T06:54:00,853   adding 'galaxy_app-23.1.4.dist-info/RECORD'
2024-01-06T06:54:00,881   removing build/bdist.linux-armv7l/wheel
2024-01-06T06:54:01,122   Building wheel for galaxy-app (pyproject.toml): finished with status 'done'
2024-01-06T06:54:01,163   Created wheel for galaxy-app: filename=galaxy_app-23.1.4-py3-none-any.whl size=1396809 sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942
2024-01-06T06:54:01,164   Stored in directory: /tmp/pip-ephem-wheel-cache-x69dxssm/wheels/d8/c9/c5/63348d69eba509247492d34c84bcc844d54901160a9682a652
2024-01-06T06:54:01,196 Successfully built galaxy-app
2024-01-06T06:54:01,235 Removed build tracker: '/tmp/pip-build-tracker-2bt9uma2'