2024-01-06T07:05:34,798 Created temporary directory: /tmp/pip-build-tracker-sr09g4t8 2024-01-06T07:05:34,800 Initialized build tracking at /tmp/pip-build-tracker-sr09g4t8 2024-01-06T07:05:34,800 Created build tracker: /tmp/pip-build-tracker-sr09g4t8 2024-01-06T07:05:34,801 Entered build tracker: /tmp/pip-build-tracker-sr09g4t8 2024-01-06T07:05:34,801 Created temporary directory: /tmp/pip-wheel-5k7s33fj 2024-01-06T07:05:34,805 Created temporary directory: /tmp/pip-ephem-wheel-cache-8sugmq8s 2024-01-06T07:05:34,828 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T07:05:34,831 2 location(s) to search for versions of emzed-ext-mzmine2: 2024-01-06T07:05:34,831 * https://pypi.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:34,831 * https://www.piwheels.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:34,832 Fetching project page and analyzing links: https://pypi.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:34,833 Getting page https://pypi.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:34,834 Found index url https://pypi.org/simple/ 2024-01-06T07:05:35,047 Fetched page https://pypi.org/simple/emzed-ext-mzmine2/ as application/vnd.pypi.simple.v1+json 2024-01-06T07:05:35,049 Skipping link: No binaries permitted for emzed-ext-mzmine2: https://files.pythonhosted.org/packages/35/d2/d47518677342c16859c1d0afdff3b3024d28a5eb216055b6ce344d4d7878/emzed_ext_mzmine2-3.0.0a1-py3-none-any.whl (from https://pypi.org/simple/emzed-ext-mzmine2/) 2024-01-06T07:05:35,049 Found link https://files.pythonhosted.org/packages/5a/32/4271538c74bb4732a57e737305872ab3273069eac6787a1933a2452c8e68/emzed_ext_mzmine2-3.0.0a1.tar.gz (from https://pypi.org/simple/emzed-ext-mzmine2/), version: 3.0.0a1 2024-01-06T07:05:35,050 Fetching project page and analyzing links: https://www.piwheels.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:35,051 Getting page https://www.piwheels.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:35,052 Found index url https://www.piwheels.org/simple/ 2024-01-06T07:05:35,206 Fetched page https://www.piwheels.org/simple/emzed-ext-mzmine2/ as text/html 2024-01-06T07:05:35,207 Skipping link: not a file: https://www.piwheels.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:35,208 Skipping link: not a file: https://pypi.org/simple/emzed-ext-mzmine2/ 2024-01-06T07:05:35,226 Given no hashes to check 1 links for project 'emzed-ext-mzmine2': discarding no candidates 2024-01-06T07:05:35,244 Collecting emzed-ext-mzmine2==3.0.0a1 2024-01-06T07:05:35,246 Created temporary directory: /tmp/pip-unpack-qvenlymn 2024-01-06T07:05:35,455 Downloading emzed_ext_mzmine2-3.0.0a1.tar.gz (109 kB) 2024-01-06T07:05:35,599 Added emzed-ext-mzmine2==3.0.0a1 from https://files.pythonhosted.org/packages/5a/32/4271538c74bb4732a57e737305872ab3273069eac6787a1933a2452c8e68/emzed_ext_mzmine2-3.0.0a1.tar.gz to build tracker '/tmp/pip-build-tracker-sr09g4t8' 2024-01-06T07:05:35,603 Created temporary directory: /tmp/pip-build-env-55sxym1b 2024-01-06T07:05:35,607 Installing build dependencies: started 2024-01-06T07:05:35,608 Running command pip subprocess to install build dependencies 2024-01-06T07:05:36,754 Using pip 23.3.1 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2024-01-06T07:05:37,272 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T07:05:38,696 Collecting setuptools 2024-01-06T07:05:38,711 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-06T07:05:38,932 Collecting wheel 2024-01-06T07:05:38,945 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-06T07:05:41,537 Installing collected packages: wheel, setuptools 2024-01-06T07:05:41,757 Creating /tmp/pip-build-env-55sxym1b/overlay/local/bin 2024-01-06T07:05:41,759 changing mode of /tmp/pip-build-env-55sxym1b/overlay/local/bin/wheel to 755 2024-01-06T07:05:43,981 Successfully installed setuptools-69.0.3 wheel-0.42.0 2024-01-06T07:05:44,252 [notice] A new release of pip is available: 23.3.1 -> 23.3.2 2024-01-06T07:05:44,253 [notice] To update, run: python3 -m pip install --upgrade pip 2024-01-06T07:05:44,525 Installing build dependencies: finished with status 'done' 2024-01-06T07:05:44,536 Getting requirements to build wheel: started 2024-01-06T07:05:44,538 Running command Getting requirements to build wheel 2024-01-06T07:05:45,041 running egg_info 2024-01-06T07:05:45,045 writing src/emzed_ext_mzmine2.egg-info/PKG-INFO 2024-01-06T07:05:45,048 writing dependency_links to src/emzed_ext_mzmine2.egg-info/dependency_links.txt 2024-01-06T07:05:45,050 writing requirements to src/emzed_ext_mzmine2.egg-info/requires.txt 2024-01-06T07:05:45,051 writing top-level names to src/emzed_ext_mzmine2.egg-info/top_level.txt 2024-01-06T07:05:45,070 reading manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:45,072 reading manifest template 'MANIFEST.in' 2024-01-06T07:05:45,083 writing manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:45,160 Getting requirements to build wheel: finished with status 'done' 2024-01-06T07:05:45,169 Created temporary directory: /tmp/pip-modern-metadata-y3vndbhy 2024-01-06T07:05:45,172 Preparing metadata (pyproject.toml): started 2024-01-06T07:05:45,173 Running command Preparing metadata (pyproject.toml) 2024-01-06T07:05:45,643 running dist_info 2024-01-06T07:05:45,660 creating /tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info 2024-01-06T07:05:45,665 writing /tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/PKG-INFO 2024-01-06T07:05:45,668 writing dependency_links to /tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/dependency_links.txt 2024-01-06T07:05:45,670 writing requirements to /tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/requires.txt 2024-01-06T07:05:45,672 writing top-level names to /tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/top_level.txt 2024-01-06T07:05:45,673 writing manifest file '/tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:45,690 reading manifest file '/tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:45,692 reading manifest template 'MANIFEST.in' 2024-01-06T07:05:45,702 writing manifest file '/tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:45,703 creating '/tmp/pip-modern-metadata-y3vndbhy/emzed_ext_mzmine2-3.0.0a1.dist-info' 2024-01-06T07:05:45,884 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-06T07:05:45,889 Source in /tmp/pip-wheel-5k7s33fj/emzed-ext-mzmine2_5ddb8bedc4514a99a47fecdf285767ca has version 3.0.0a1, which satisfies requirement emzed-ext-mzmine2==3.0.0a1 from https://files.pythonhosted.org/packages/5a/32/4271538c74bb4732a57e737305872ab3273069eac6787a1933a2452c8e68/emzed_ext_mzmine2-3.0.0a1.tar.gz 2024-01-06T07:05:45,890 Removed emzed-ext-mzmine2==3.0.0a1 from https://files.pythonhosted.org/packages/5a/32/4271538c74bb4732a57e737305872ab3273069eac6787a1933a2452c8e68/emzed_ext_mzmine2-3.0.0a1.tar.gz from build tracker '/tmp/pip-build-tracker-sr09g4t8' 2024-01-06T07:05:45,893 Created temporary directory: /tmp/pip-unpack-2nvm9j19 2024-01-06T07:05:45,894 Created temporary directory: /tmp/pip-unpack-230aw8bg 2024-01-06T07:05:45,899 Building wheels for collected packages: emzed-ext-mzmine2 2024-01-06T07:05:45,903 Created temporary directory: /tmp/pip-wheel-8l3ih0yv 2024-01-06T07:05:45,904 Destination directory: /tmp/pip-wheel-8l3ih0yv 2024-01-06T07:05:45,906 Building wheel for emzed-ext-mzmine2 (pyproject.toml): started 2024-01-06T07:05:45,907 Running command Building wheel for emzed-ext-mzmine2 (pyproject.toml) 2024-01-06T07:05:46,431 running bdist_wheel 2024-01-06T07:05:46,471 running build 2024-01-06T07:05:46,472 running build_py 2024-01-06T07:05:46,479 creating build 2024-01-06T07:05:46,480 creating build/lib 2024-01-06T07:05:46,481 creating build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,482 copying src/emzed_ext_mzmine2/fragment_search.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,484 copying src/emzed_ext_mzmine2/adduct_search.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,486 copying src/emzed_ext_mzmine2/_peak_resolvers.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,488 copying src/emzed_ext_mzmine2/remove_shoulder_peaks.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,489 copying src/emzed_ext_mzmine2/isotope_grouper.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,491 copying src/emzed_ext_mzmine2/join_aligner.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,493 copying src/emzed_ext_mzmine2/_java_utils.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,495 copying src/emzed_ext_mzmine2/_utils.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,497 copying src/emzed_ext_mzmine2/_installers.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,499 copying src/emzed_ext_mzmine2/pick_peaks.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,500 copying src/emzed_ext_mzmine2/__init__.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,502 copying src/emzed_ext_mzmine2/_parameters.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,504 copying src/emzed_ext_mzmine2/_exceptions.py -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,505 running egg_info 2024-01-06T07:05:46,510 writing src/emzed_ext_mzmine2.egg-info/PKG-INFO 2024-01-06T07:05:46,512 writing dependency_links to src/emzed_ext_mzmine2.egg-info/dependency_links.txt 2024-01-06T07:05:46,513 writing requirements to src/emzed_ext_mzmine2.egg-info/requires.txt 2024-01-06T07:05:46,514 writing top-level names to src/emzed_ext_mzmine2.egg-info/top_level.txt 2024-01-06T07:05:46,522 reading manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:46,524 reading manifest template 'MANIFEST.in' 2024-01-06T07:05:46,534 writing manifest file 'src/emzed_ext_mzmine2.egg-info/SOURCES.txt' 2024-01-06T07:05:46,536 /tmp/pip-build-env-55sxym1b/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:207: _Warning: Package 'emzed_ext_mzmine2.java' is absent from the `packages` configuration. 2024-01-06T07:05:46,537 !! 2024-01-06T07:05:46,538 ******************************************************************************** 2024-01-06T07:05:46,539 ############################ 2024-01-06T07:05:46,539 # Package would be ignored # 2024-01-06T07:05:46,540 ############################ 2024-01-06T07:05:46,540 Python recognizes 'emzed_ext_mzmine2.java' as an importable package[^1], 2024-01-06T07:05:46,541 but it is absent from setuptools' `packages` configuration. 2024-01-06T07:05:46,542 This leads to an ambiguous overall configuration. If you want to distribute this 2024-01-06T07:05:46,542 package, please make sure that 'emzed_ext_mzmine2.java' is explicitly added 2024-01-06T07:05:46,543 to the `packages` configuration field. 2024-01-06T07:05:46,546 Alternatively, you can also rely on setuptools' discovery methods 2024-01-06T07:05:46,548 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2024-01-06T07:05:46,548 instead of `find_packages(...)`/`find:`). 2024-01-06T07:05:46,549 You can read more about "package discovery" on setuptools documentation page: 2024-01-06T07:05:46,550 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2024-01-06T07:05:46,551 If you don't want 'emzed_ext_mzmine2.java' to be distributed and are 2024-01-06T07:05:46,552 already explicitly excluding 'emzed_ext_mzmine2.java' via 2024-01-06T07:05:46,553 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2024-01-06T07:05:46,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2024-01-06T07:05:46,554 combination with a more fine grained `package-data` configuration. 2024-01-06T07:05:46,555 You can read more about "package data files" on setuptools documentation page: 2024-01-06T07:05:46,556 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2024-01-06T07:05:46,557 [^1]: For Python, any directory (with suitable naming) can be imported, 2024-01-06T07:05:46,558 even if it does not contain any `.py` files. 2024-01-06T07:05:46,558 On the other hand, currently there is no concept of package data 2024-01-06T07:05:46,559 directory, all directories are treated like packages. 2024-01-06T07:05:46,559 ******************************************************************************** 2024-01-06T07:05:46,560 !! 2024-01-06T07:05:46,560 check.warn(importable) 2024-01-06T07:05:46,561 copying src/emzed_ext_mzmine2/_mzmine2_default_adducts.json -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,561 copying src/emzed_ext_mzmine2/_mzmine2_parameter_classes.json -> build/lib/emzed_ext_mzmine2 2024-01-06T07:05:46,562 creating build/lib/emzed_ext_mzmine2/java 2024-01-06T07:05:46,562 copying src/emzed_ext_mzmine2/java/extensions.jar -> build/lib/emzed_ext_mzmine2/java 2024-01-06T07:05:46,566 installing to build/bdist.linux-armv7l/wheel 2024-01-06T07:05:46,566 running install 2024-01-06T07:05:46,590 running install_lib 2024-01-06T07:05:46,596 creating build/bdist.linux-armv7l 2024-01-06T07:05:46,597 creating build/bdist.linux-armv7l/wheel 2024-01-06T07:05:46,598 creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,599 copying build/lib/emzed_ext_mzmine2/_mzmine2_parameter_classes.json -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,608 copying build/lib/emzed_ext_mzmine2/fragment_search.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,610 copying build/lib/emzed_ext_mzmine2/_mzmine2_default_adducts.json -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,612 copying build/lib/emzed_ext_mzmine2/adduct_search.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,614 copying build/lib/emzed_ext_mzmine2/_peak_resolvers.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,615 copying build/lib/emzed_ext_mzmine2/remove_shoulder_peaks.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,618 creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2/java 2024-01-06T07:05:46,619 copying build/lib/emzed_ext_mzmine2/java/extensions.jar -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2/java 2024-01-06T07:05:46,622 copying build/lib/emzed_ext_mzmine2/isotope_grouper.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,623 copying build/lib/emzed_ext_mzmine2/join_aligner.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,625 copying build/lib/emzed_ext_mzmine2/_java_utils.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,627 copying build/lib/emzed_ext_mzmine2/_utils.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,629 copying build/lib/emzed_ext_mzmine2/_installers.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,631 copying build/lib/emzed_ext_mzmine2/pick_peaks.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,633 copying build/lib/emzed_ext_mzmine2/__init__.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,635 copying build/lib/emzed_ext_mzmine2/_parameters.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,637 copying build/lib/emzed_ext_mzmine2/_exceptions.py -> build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2 2024-01-06T07:05:46,638 running install_egg_info 2024-01-06T07:05:46,649 Copying src/emzed_ext_mzmine2.egg-info to build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2-3.0.0a1-py3.11.egg-info 2024-01-06T07:05:46,659 running install_scripts 2024-01-06T07:05:46,670 creating build/bdist.linux-armv7l/wheel/emzed_ext_mzmine2-3.0.0a1.dist-info/WHEEL 2024-01-06T07:05:46,672 creating '/tmp/pip-wheel-8l3ih0yv/.tmp-h_01sgek/emzed_ext_mzmine2-3.0.0a1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2024-01-06T07:05:46,675 adding 'emzed_ext_mzmine2/__init__.py' 2024-01-06T07:05:46,676 adding 'emzed_ext_mzmine2/_exceptions.py' 2024-01-06T07:05:46,677 adding 'emzed_ext_mzmine2/_installers.py' 2024-01-06T07:05:46,679 adding 'emzed_ext_mzmine2/_java_utils.py' 2024-01-06T07:05:46,680 adding 'emzed_ext_mzmine2/_mzmine2_default_adducts.json' 2024-01-06T07:05:46,703 adding 'emzed_ext_mzmine2/_mzmine2_parameter_classes.json' 2024-01-06T07:05:46,708 adding 'emzed_ext_mzmine2/_parameters.py' 2024-01-06T07:05:46,710 adding 'emzed_ext_mzmine2/_peak_resolvers.py' 2024-01-06T07:05:46,711 adding 'emzed_ext_mzmine2/_utils.py' 2024-01-06T07:05:46,712 adding 'emzed_ext_mzmine2/adduct_search.py' 2024-01-06T07:05:46,714 adding 'emzed_ext_mzmine2/fragment_search.py' 2024-01-06T07:05:46,715 adding 'emzed_ext_mzmine2/isotope_grouper.py' 2024-01-06T07:05:46,716 adding 'emzed_ext_mzmine2/join_aligner.py' 2024-01-06T07:05:46,718 adding 'emzed_ext_mzmine2/pick_peaks.py' 2024-01-06T07:05:46,719 adding 'emzed_ext_mzmine2/remove_shoulder_peaks.py' 2024-01-06T07:05:46,725 adding 'emzed_ext_mzmine2/java/extensions.jar' 2024-01-06T07:05:46,727 adding 'emzed_ext_mzmine2-3.0.0a1.dist-info/METADATA' 2024-01-06T07:05:46,728 adding 'emzed_ext_mzmine2-3.0.0a1.dist-info/WHEEL' 2024-01-06T07:05:46,729 adding 'emzed_ext_mzmine2-3.0.0a1.dist-info/top_level.txt' 2024-01-06T07:05:46,730 adding 'emzed_ext_mzmine2-3.0.0a1.dist-info/RECORD' 2024-01-06T07:05:46,733 removing build/bdist.linux-armv7l/wheel 2024-01-06T07:05:46,831 Building wheel for emzed-ext-mzmine2 (pyproject.toml): finished with status 'done' 2024-01-06T07:05:46,837 Created wheel for emzed-ext-mzmine2: filename=emzed_ext_mzmine2-3.0.0a1-py3-none-any.whl size=110196 sha256=2a12b9d9c8275437816f419166e61f2b492f20a8b57b7f18fe16b3ed6f482c4b 2024-01-06T07:05:46,838 Stored in directory: /tmp/pip-ephem-wheel-cache-8sugmq8s/wheels/a8/db/0e/a476500f1b287c6edc14a97625813cc0774263c7b8c8697016 2024-01-06T07:05:46,847 Successfully built emzed-ext-mzmine2 2024-01-06T07:05:46,853 Removed build tracker: '/tmp/pip-build-tracker-sr09g4t8'