2024-01-06T07:13:21,787 Created temporary directory: /tmp/pip-build-tracker-q0w_cvgm 2024-01-06T07:13:21,788 Initialized build tracking at /tmp/pip-build-tracker-q0w_cvgm 2024-01-06T07:13:21,788 Created build tracker: /tmp/pip-build-tracker-q0w_cvgm 2024-01-06T07:13:21,788 Entered build tracker: /tmp/pip-build-tracker-q0w_cvgm 2024-01-06T07:13:21,789 Created temporary directory: /tmp/pip-wheel-kvpwp0im 2024-01-06T07:13:21,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-8e738uw1 2024-01-06T07:13:21,817 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T07:13:21,821 2 location(s) to search for versions of dedalus: 2024-01-06T07:13:21,821 * https://pypi.org/simple/dedalus/ 2024-01-06T07:13:21,821 * https://www.piwheels.org/simple/dedalus/ 2024-01-06T07:13:21,821 Fetching project page and analyzing links: https://pypi.org/simple/dedalus/ 2024-01-06T07:13:21,822 Getting page https://pypi.org/simple/dedalus/ 2024-01-06T07:13:21,823 Found index url https://pypi.org/simple/ 2024-01-06T07:13:21,874 Fetched page https://pypi.org/simple/dedalus/ as application/vnd.pypi.simple.v1+json 2024-01-06T07:13:21,877 Found link https://files.pythonhosted.org/packages/b0/14/0ff5a71edb6b24042c73c2f3f6399d53d5c8774286ffcd28a12bdfc605b9/dedalus-2.1810a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a1 2024-01-06T07:13:21,878 Found link https://files.pythonhosted.org/packages/e2/ca/5d0d3728868ae9fde3c2e291200fe3a96d2a66aa22119a2da4bd25a64f59/dedalus-2.1810a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a2 2024-01-06T07:13:21,878 Found link https://files.pythonhosted.org/packages/ec/34/03ef1e989cc8afed1906156481ee53fe4ac305c07147cf41195a31eac965/dedalus-2.1810a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810a3 2024-01-06T07:13:21,878 Found link https://files.pythonhosted.org/packages/ba/bc/fdd40d0bbab4c5d6e98f71e33b52022894daf6b702086c287e98e115419c/dedalus-2.1810.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1810 2024-01-06T07:13:21,879 Found link https://files.pythonhosted.org/packages/7e/b5/b278399c1a9624c6f26665d3c0668e4ebaeff57c3943956b7354f4eae24f/dedalus-2.1905a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a1 2024-01-06T07:13:21,879 Found link https://files.pythonhosted.org/packages/f1/47/6fd2edd457e8bd73d375758a45633b217a7e6dba8d1c211ecfc86260d5d2/dedalus-2.1905a2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a2 2024-01-06T07:13:21,879 Found link https://files.pythonhosted.org/packages/0e/1a/8b178bbc4c097e5485a841d9f0af8d9009c9d196b3b95afd86b3e889535c/dedalus-2.1905a3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905a3 2024-01-06T07:13:21,879 Found link https://files.pythonhosted.org/packages/19/56/7d68f1f71364cc048a4d651cb27db8138916162883bd4134a77424db6a85/dedalus-2.1905.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.1905 2024-01-06T07:13:21,880 Found link https://files.pythonhosted.org/packages/47/74/1c69ee6ea00ad17d28fad84693158f43125ca9ab2cba2ff892a45d26e320/dedalus-2.2006a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006a1 2024-01-06T07:13:21,880 Found link https://files.pythonhosted.org/packages/a9/a9/676aab3727076de1b54a5465834eab64965e6bbc4af780274243554bd082/dedalus-2.2006.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2006 2024-01-06T07:13:21,880 Found link https://files.pythonhosted.org/packages/bf/c5/7b02ced5397a7e18537d3a4a4c8c002a988e5b00318b290473b98e75e8b3/dedalus-2.2207a1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207a1 2024-01-06T07:13:21,880 Found link https://files.pythonhosted.org/packages/6d/89/0f5b60cfd1d8dbe89f1f7293ee388ceef66f537ee8b5988cb6c7a8d35c6b/dedalus-2.2207.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207 2024-01-06T07:13:21,881 Found link https://files.pythonhosted.org/packages/80/c7/dbd9d9e7ea71d7257492d396bf23fd9731ed71fc881a938ac3c62613e490/dedalus-2.2207.1.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.1 2024-01-06T07:13:21,881 Found link https://files.pythonhosted.org/packages/e3/b3/65770bba55872c9bd289ad2f8ee148db12f4ea78e50e17c083926521af98/dedalus-2.2207.2.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.2 2024-01-06T07:13:21,881 Found link https://files.pythonhosted.org/packages/68/e2/2b8db73de77e5a6b42dc737d2f299f67adb2bc2751f6728d8f402d5f34b5/dedalus-2.2207.3.tar.gz (from https://pypi.org/simple/dedalus/), version: 2.2207.3 2024-01-06T07:13:21,882 Found link https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz (from https://pypi.org/simple/dedalus/) (requires-python:>=3.8), version: 3.0.0 2024-01-06T07:13:21,882 Fetching project page and analyzing links: https://www.piwheels.org/simple/dedalus/ 2024-01-06T07:13:21,883 Getting page https://www.piwheels.org/simple/dedalus/ 2024-01-06T07:13:21,884 Found index url https://www.piwheels.org/simple/ 2024-01-06T07:13:21,957 Fetched page https://www.piwheels.org/simple/dedalus/ as text/html 2024-01-06T07:13:21,958 Skipping link: not a file: https://www.piwheels.org/simple/dedalus/ 2024-01-06T07:13:21,958 Skipping link: not a file: https://pypi.org/simple/dedalus/ 2024-01-06T07:13:21,976 Given no hashes to check 1 links for project 'dedalus': discarding no candidates 2024-01-06T07:13:21,993 Collecting dedalus==3.0.0 2024-01-06T07:13:21,996 Created temporary directory: /tmp/pip-unpack-3q_tv1ls 2024-01-06T07:13:22,039 Downloading dedalus-3.0.0.tar.gz (245 kB) 2024-01-06T07:13:22,344 Added dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-q0w_cvgm' 2024-01-06T07:13:22,351 Created temporary directory: /tmp/pip-build-env-0m_z8b99 2024-01-06T07:13:22,361 Installing build dependencies: started 2024-01-06T07:13:22,362 Running command pip subprocess to install build dependencies 2024-01-06T07:13:23,737 Using pip 23.3 from /home/piwheels/.local/lib/python3.9/site-packages/pip (python 3.9) 2024-01-06T07:13:24,289 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2024-01-06T07:13:25,646 Collecting cython>=3.0.5 2024-01-06T07:13:25,662 Using cached https://www.piwheels.org/simple/cython/Cython-3.0.7-cp39-cp39-linux_armv7l.whl (10.7 MB) 2024-01-06T07:13:26,149 Collecting mpi4py>=2.0.0 2024-01-06T07:13:26,170 Using cached https://www.piwheels.org/simple/mpi4py/mpi4py-3.1.5-cp39-cp39-linux_armv7l.whl (2.9 MB) 2024-01-06T07:13:27,222 Collecting numpy>=1.20.0 2024-01-06T07:13:27,238 Using cached https://www.piwheels.org/simple/numpy/numpy-1.26.2-cp39-cp39-linux_armv7l.whl (19.4 MB) 2024-01-06T07:13:29,223 Collecting setuptools 2024-01-06T07:13:29,239 Using cached https://www.piwheels.org/simple/setuptools/setuptools-69.0.3-py3-none-any.whl (819 kB) 2024-01-06T07:13:29,481 Collecting wheel 2024-01-06T07:13:29,496 Using cached https://www.piwheels.org/simple/wheel/wheel-0.42.0-py3-none-any.whl (65 kB) 2024-01-06T07:13:31,465 Installing collected packages: wheel, setuptools, numpy, mpi4py, cython 2024-01-06T07:13:31,681 Creating /tmp/pip-build-env-0m_z8b99/overlay/bin 2024-01-06T07:13:31,684 changing mode of /tmp/pip-build-env-0m_z8b99/overlay/bin/wheel to 755 2024-01-06T07:13:41,266 changing mode of /tmp/pip-build-env-0m_z8b99/overlay/bin/f2py to 755 2024-01-06T07:13:45,037 changing mode of /tmp/pip-build-env-0m_z8b99/overlay/bin/cygdb to 755 2024-01-06T07:13:45,039 changing mode of /tmp/pip-build-env-0m_z8b99/overlay/bin/cython to 755 2024-01-06T07:13:45,041 changing mode of /tmp/pip-build-env-0m_z8b99/overlay/bin/cythonize to 755 2024-01-06T07:13:45,066 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. 2024-01-06T07:13:45,067 scipy 1.8.1 requires numpy<1.25.0,>=1.17.3, but you have numpy 1.26.2 which is incompatible. 2024-01-06T07:13:45,067 Successfully installed cython-3.0.7 mpi4py-3.1.5 numpy-1.26.2 setuptools-69.0.3 wheel-0.42.0 2024-01-06T07:13:45,249 WARNING: There was an error checking the latest version of pip. 2024-01-06T07:13:45,682 Installing build dependencies: finished with status 'done' 2024-01-06T07:13:45,693 Getting requirements to build wheel: started 2024-01-06T07:13:45,694 Running command Getting requirements to build wheel 2024-01-06T07:14:05,392 Configuration: 2024-01-06T07:14:05,392 INCLUDE_MPI = True 2024-01-06T07:14:05,392 INCLUDE_FFTW = True 2024-01-06T07:14:05,392 FFTW_STATIC = False 2024-01-06T07:14:05,392 CYTHON_PROFILE = False 2024-01-06T07:14:05,393 Looking for mpi include path: 2024-01-06T07:14:05,393 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:05,393 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:05,393 Looking for mpi library path: 2024-01-06T07:14:05,393 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:05,393 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:05,393 Looking for fftw include path: 2024-01-06T07:14:05,393 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:05,394 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:05,394 Looking for fftw library path: 2024-01-06T07:14:05,394 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:05,394 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:05,394 Compiling dedalus/core/transposes.pyx because it changed. 2024-01-06T07:14:05,394 Compiling dedalus/tools/linalg.pyx because it changed. 2024-01-06T07:14:05,394 Compiling dedalus/libraries/fftw/fftw_wrappers.pyx because it changed. 2024-01-06T07:14:05,394 Compiling dedalus/libraries/spin_recombination.pyx because it changed. 2024-01-06T07:14:05,395 [1/4] Cythonizing dedalus/core/transposes.pyx 2024-01-06T07:14:05,395 [2/4] Cythonizing dedalus/libraries/fftw/fftw_wrappers.pyx 2024-01-06T07:14:05,395 [3/4] Cythonizing dedalus/libraries/spin_recombination.pyx 2024-01-06T07:14:05,395 [4/4] Cythonizing dedalus/tools/linalg.pyx 2024-01-06T07:14:05,476 running egg_info 2024-01-06T07:14:05,482 writing dedalus.egg-info/PKG-INFO 2024-01-06T07:14:05,485 writing dependency_links to dedalus.egg-info/dependency_links.txt 2024-01-06T07:14:05,487 writing entry points to dedalus.egg-info/entry_points.txt 2024-01-06T07:14:05,489 writing requirements to dedalus.egg-info/requires.txt 2024-01-06T07:14:05,490 writing top-level names to dedalus.egg-info/top_level.txt 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,551 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,552 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,553 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,553 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:05,558 reading manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-06T07:14:05,562 reading manifest template 'MANIFEST.in' 2024-01-06T07:14:05,578 adding license file 'LICENSE.txt' 2024-01-06T07:14:05,584 writing manifest file 'dedalus.egg-info/SOURCES.txt' 2024-01-06T07:14:06,734 Getting requirements to build wheel: finished with status 'done' 2024-01-06T07:14:06,743 Created temporary directory: /tmp/pip-modern-metadata-fzoq71j3 2024-01-06T07:14:06,745 Preparing metadata (pyproject.toml): started 2024-01-06T07:14:06,746 Running command Preparing metadata (pyproject.toml) 2024-01-06T07:14:08,428 Configuration: 2024-01-06T07:14:08,429 INCLUDE_MPI = True 2024-01-06T07:14:08,429 INCLUDE_FFTW = True 2024-01-06T07:14:08,429 FFTW_STATIC = False 2024-01-06T07:14:08,429 CYTHON_PROFILE = False 2024-01-06T07:14:08,429 Looking for mpi include path: 2024-01-06T07:14:08,430 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:08,430 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:08,430 Looking for mpi library path: 2024-01-06T07:14:08,430 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:08,430 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:08,430 Looking for fftw include path: 2024-01-06T07:14:08,430 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:08,431 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:08,431 Looking for fftw library path: 2024-01-06T07:14:08,431 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:08,431 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:08,481 running dist_info 2024-01-06T07:14:08,500 creating /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info 2024-01-06T07:14:08,506 writing /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/PKG-INFO 2024-01-06T07:14:08,509 writing dependency_links to /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/dependency_links.txt 2024-01-06T07:14:08,511 writing entry points to /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/entry_points.txt 2024-01-06T07:14:08,512 writing requirements to /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/requires.txt 2024-01-06T07:14:08,513 writing top-level names to /tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/top_level.txt 2024-01-06T07:14:08,515 writing manifest file '/tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/SOURCES.txt' 2024-01-06T07:14:08,558 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,558 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,558 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,559 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,560 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,560 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,560 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,560 dependency /tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2024-01-06T07:14:08,565 reading manifest file '/tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/SOURCES.txt' 2024-01-06T07:14:08,567 reading manifest template 'MANIFEST.in' 2024-01-06T07:14:08,583 adding license file 'LICENSE.txt' 2024-01-06T07:14:08,588 writing manifest file '/tmp/pip-modern-metadata-fzoq71j3/dedalus.egg-info/SOURCES.txt' 2024-01-06T07:14:08,589 creating '/tmp/pip-modern-metadata-fzoq71j3/dedalus-3.0.0.dist-info' 2024-01-06T07:14:08,814 Preparing metadata (pyproject.toml): finished with status 'done' 2024-01-06T07:14:08,820 Source in /tmp/pip-wheel-kvpwp0im/dedalus_cf3bf118ba6a4a35b0fe82bf6f53cec5 has version 3.0.0, which satisfies requirement dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz 2024-01-06T07:14:08,821 Removed dedalus==3.0.0 from https://files.pythonhosted.org/packages/af/7b/53327acc5c7d088603509b39a730277df3d4cd14337f8749633d206c21c2/dedalus-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-q0w_cvgm' 2024-01-06T07:14:08,827 Created temporary directory: /tmp/pip-unpack-5j4qj_ly 2024-01-06T07:14:08,828 Created temporary directory: /tmp/pip-unpack-xqe9i310 2024-01-06T07:14:08,846 Building wheels for collected packages: dedalus 2024-01-06T07:14:08,851 Created temporary directory: /tmp/pip-wheel-67t5w33n 2024-01-06T07:14:08,851 Destination directory: /tmp/pip-wheel-67t5w33n 2024-01-06T07:14:08,853 Building wheel for dedalus (pyproject.toml): started 2024-01-06T07:14:08,854 Running command Building wheel for dedalus (pyproject.toml) 2024-01-06T07:14:10,496 Configuration: 2024-01-06T07:14:10,497 INCLUDE_MPI = True 2024-01-06T07:14:10,497 INCLUDE_FFTW = True 2024-01-06T07:14:10,497 FFTW_STATIC = False 2024-01-06T07:14:10,497 CYTHON_PROFILE = False 2024-01-06T07:14:10,498 Looking for mpi include path: 2024-01-06T07:14:10,498 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:10,498 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:10,498 Looking for mpi library path: 2024-01-06T07:14:10,498 Cannot find MPI_PATH, MPI_PREFIX, or libraries matching mpi. 2024-01-06T07:14:10,498 If mpi isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:10,498 Looking for fftw include path: 2024-01-06T07:14:10,499 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:10,499 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:10,499 Looking for fftw library path: 2024-01-06T07:14:10,499 Cannot find FFTW_PATH, FFTW_PREFIX, or libraries matching fftw. 2024-01-06T07:14:10,499 If fftw isn't in your LD_LIBRARY_PATH, compilation will likely fail. 2024-01-06T07:14:10,591 running bdist_wheel 2024-01-06T07:14:10,643 running build 2024-01-06T07:14:10,646 running build_py 2024-01-06T07:14:10,655 creating build 2024-01-06T07:14:10,656 creating build/lib.linux-armv7l-cpython-39 2024-01-06T07:14:10,656 creating build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,657 copying dedalus/dev.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,659 copying dedalus/public.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,660 copying dedalus/__main__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,662 copying dedalus/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,664 creating build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,665 copying dedalus/tools/general.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,667 copying dedalus/tools/plot_op.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,669 copying dedalus/tools/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,670 copying dedalus/tools/parallel.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,672 copying dedalus/tools/cache.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,674 copying dedalus/tools/dispatch.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,675 copying dedalus/tools/post.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,677 copying dedalus/tools/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,679 copying dedalus/tools/parsing.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,681 copying dedalus/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,682 copying dedalus/tools/config.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,683 copying dedalus/tools/random_arrays.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,685 copying dedalus/tools/array.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,687 copying dedalus/tools/logging.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,689 copying dedalus/tools/exceptions.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,691 copying dedalus/tools/progress.py -> build/lib.linux-armv7l-cpython-39/dedalus/tools 2024-01-06T07:14:10,694 creating build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,694 copying dedalus/tests/test_fourier_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,696 copying dedalus/tests/test_clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,698 copying dedalus/tests/test_lbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,700 copying dedalus/tests/test_transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,703 copying dedalus/tests/test_spherical_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,705 copying dedalus/tests/test_cylinder_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,707 copying dedalus/tests/test_cylinder_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,709 copying dedalus/tests/test_cartesian_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,712 copying dedalus/tests/test_polar_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,714 copying dedalus/tests/test_spherical_arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,716 copying dedalus/tests/ball_diffusion_analytical_eigenvalues.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,717 copying dedalus/tests/test_evp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,719 copying dedalus/tests/test_cfl.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,721 copying dedalus/tests/test_polar_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,724 copying dedalus/tests/test_cylinder_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,726 copying dedalus/tests/test_sphere_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,728 copying dedalus/tests/test_spherical_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,730 copying dedalus/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,732 copying dedalus/tests/test_spherical_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,734 copying dedalus/tests/test_grid_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,736 copying dedalus/tests/test_polar_calculus.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,738 copying dedalus/tests/test_cartesian_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,740 copying dedalus/tests/test_jacobi_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,742 copying dedalus/tests/test_nlbvp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,744 copying dedalus/tests/test_sphere_ncc.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,746 copying dedalus/tests/test_output.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,748 copying dedalus/tests/test_ivp.py -> build/lib.linux-armv7l-cpython-39/dedalus/tests 2024-01-06T07:14:10,751 creating build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,752 copying dedalus/core/field.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,755 copying dedalus/core/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,759 copying dedalus/core/arithmetic.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,762 copying dedalus/core/system.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,764 copying dedalus/core/future.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,767 copying dedalus/core/evaluator.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,769 copying dedalus/core/subsystems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,772 copying dedalus/core/distributor.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,775 copying dedalus/core/basis.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,782 copying dedalus/core/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,784 copying dedalus/core/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,786 copying dedalus/core/domain.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,788 copying dedalus/core/problems.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,791 copying dedalus/core/coords.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,793 copying dedalus/core/solvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,795 copying dedalus/core/transforms.py -> build/lib.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,799 creating build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-06T07:14:10,800 copying dedalus/extras/flow_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-06T07:14:10,802 copying dedalus/extras/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-06T07:14:10,803 copying dedalus/extras/plot_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/extras 2024-01-06T07:14:10,806 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-06T07:14:10,807 copying dedalus/libraries/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-06T07:14:10,808 copying dedalus/libraries/matsolvers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries 2024-01-06T07:14:10,812 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,812 copying dedalus/libraries/dedalus_sphere/operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,815 copying dedalus/libraries/dedalus_sphere/sphere.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,817 copying dedalus/libraries/dedalus_sphere/ball_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,819 copying dedalus/libraries/dedalus_sphere/annulus.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,821 copying dedalus/libraries/dedalus_sphere/clenshaw.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,823 copying dedalus/libraries/dedalus_sphere/shell.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,826 copying dedalus/libraries/dedalus_sphere/sphere_wrapper.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,829 copying dedalus/libraries/dedalus_sphere/jacobi.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,832 copying dedalus/libraries/dedalus_sphere/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,833 copying dedalus/libraries/dedalus_sphere/timesteppers.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,835 copying dedalus/libraries/dedalus_sphere/spin_operators.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,837 copying dedalus/libraries/dedalus_sphere/zernike.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,839 copying dedalus/libraries/dedalus_sphere/tuple_tools.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,840 copying dedalus/libraries/dedalus_sphere/old_intertwiner.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/dedalus_sphere 2024-01-06T07:14:10,842 creating build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-06T07:14:10,843 copying dedalus/libraries/fftw/__init__.py -> build/lib.linux-armv7l-cpython-39/dedalus/libraries/fftw 2024-01-06T07:14:10,849 copying dedalus/dedalus.cfg -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,851 copying dedalus/examples.tar.gz -> build/lib.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,859 running build_ext 2024-01-06T07:14:10,866 building 'dedalus.core.transposes' extension 2024-01-06T07:14:10,867 creating build/temp.linux-armv7l-cpython-39 2024-01-06T07:14:10,867 creating build/temp.linux-armv7l-cpython-39/dedalus 2024-01-06T07:14:10,868 creating build/temp.linux-armv7l-cpython-39/dedalus/core 2024-01-06T07:14:10,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-0m_z8b99/overlay/lib/python3.9/site-packages/mpi4py/include -Idedalus/libraries/fftw/ -I/usr/include/python3.9 -c dedalus/core/transposes.c -o build/temp.linux-armv7l-cpython-39/dedalus/core/transposes.o -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -Wno-unused-function -fopenmp 2024-01-06T07:14:11,302 dedalus/core/transposes.c:1235:10: fatal error: mpi.h: No such file or directory 2024-01-06T07:14:11,302 1235 | #include "mpi.h" 2024-01-06T07:14:11,302 | ^~~~~~~ 2024-01-06T07:14:11,302 compilation terminated. 2024-01-06T07:14:11,310 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2024-01-06T07:14:11,460 ERROR: Building wheel for dedalus (pyproject.toml) exited with 1 2024-01-06T07:14:11,477 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.9/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpakyg5tyj[/] 2024-01-06T07:14:11,477 [bold magenta]cwd[/]: /tmp/pip-wheel-kvpwp0im/dedalus_cf3bf118ba6a4a35b0fe82bf6f53cec5 2024-01-06T07:14:11,478 Building wheel for dedalus (pyproject.toml): finished with status 'error' 2024-01-06T07:14:11,480 ERROR: Failed building wheel for dedalus 2024-01-06T07:14:11,482 Failed to build dedalus 2024-01-06T07:14:11,483 ERROR: Failed to build one or more wheels 2024-01-06T07:14:11,484 Exception information: 2024-01-06T07:14:11,484 Traceback (most recent call last): 2024-01-06T07:14:11,484 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in exc_logging_wrapper 2024-01-06T07:14:11,484 status = run_func(*args) 2024-01-06T07:14:11,484 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 245, in wrapper 2024-01-06T07:14:11,484 return func(self, options, args) 2024-01-06T07:14:11,484 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 181, in run 2024-01-06T07:14:11,484 raise CommandError("Failed to build one or more wheels") 2024-01-06T07:14:11,484 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2024-01-06T07:14:11,487 Removed build tracker: '/tmp/pip-build-tracker-q0w_cvgm'